Multiple sequence alignment - TraesCS5A01G443800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G443800 chr5A 100.000 2980 0 0 1 2980 623684160 623687139 0.000000e+00 5504
1 TraesCS5A01G443800 chr5A 82.889 1987 230 60 35 1953 624476268 624474324 0.000000e+00 1685
2 TraesCS5A01G443800 chr5A 79.748 1748 230 69 1 1709 623954031 623955693 0.000000e+00 1153
3 TraesCS5A01G443800 chr5A 85.833 240 31 3 4 241 623677981 623678219 4.930000e-63 252
4 TraesCS5A01G443800 chr5B 88.308 2523 163 63 8 2477 620305974 620308417 0.000000e+00 2904
5 TraesCS5A01G443800 chr5B 90.631 1633 121 12 53 1667 620668500 620670118 0.000000e+00 2139
6 TraesCS5A01G443800 chr5B 82.970 2020 235 58 1 1953 621399918 621397941 0.000000e+00 1724
7 TraesCS5A01G443800 chr5B 79.210 1722 224 71 63 1744 620825487 620827114 0.000000e+00 1074
8 TraesCS5A01G443800 chr5D 91.823 1761 108 17 1 1743 499446990 499448732 0.000000e+00 2422
9 TraesCS5A01G443800 chr5D 82.692 1976 226 63 41 1953 499957243 499955321 0.000000e+00 1648
10 TraesCS5A01G443800 chr5D 80.079 1782 217 73 2 1744 499652132 499653814 0.000000e+00 1197
11 TraesCS5A01G443800 chr5D 85.670 970 50 31 1591 2515 499448541 499449466 0.000000e+00 939
12 TraesCS5A01G443800 chr6A 94.231 260 14 1 2715 2974 578665421 578665679 2.150000e-106 396
13 TraesCS5A01G443800 chr6A 92.748 262 16 2 2715 2974 30376860 30376600 2.800000e-100 375
14 TraesCS5A01G443800 chrUn 93.798 258 15 1 2715 2972 308629727 308629983 1.300000e-103 387
15 TraesCS5A01G443800 chr2A 93.798 258 15 1 2715 2972 765449340 765449596 1.300000e-103 387
16 TraesCS5A01G443800 chr2A 93.462 260 16 1 2715 2974 187197371 187197113 4.660000e-103 385
17 TraesCS5A01G443800 chr3A 93.050 259 16 2 2715 2972 208119694 208119437 7.800000e-101 377
18 TraesCS5A01G443800 chr3A 92.720 261 17 2 2715 2974 308311633 308311892 2.800000e-100 375
19 TraesCS5A01G443800 chr7A 93.023 258 15 2 2715 2972 34032170 34032424 1.010000e-99 374
20 TraesCS5A01G443800 chr1D 92.720 261 16 3 2715 2974 375946067 375946325 1.010000e-99 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G443800 chr5A 623684160 623687139 2979 False 5504.0 5504 100.0000 1 2980 1 chr5A.!!$F2 2979
1 TraesCS5A01G443800 chr5A 624474324 624476268 1944 True 1685.0 1685 82.8890 35 1953 1 chr5A.!!$R1 1918
2 TraesCS5A01G443800 chr5A 623954031 623955693 1662 False 1153.0 1153 79.7480 1 1709 1 chr5A.!!$F3 1708
3 TraesCS5A01G443800 chr5B 620305974 620308417 2443 False 2904.0 2904 88.3080 8 2477 1 chr5B.!!$F1 2469
4 TraesCS5A01G443800 chr5B 620668500 620670118 1618 False 2139.0 2139 90.6310 53 1667 1 chr5B.!!$F2 1614
5 TraesCS5A01G443800 chr5B 621397941 621399918 1977 True 1724.0 1724 82.9700 1 1953 1 chr5B.!!$R1 1952
6 TraesCS5A01G443800 chr5B 620825487 620827114 1627 False 1074.0 1074 79.2100 63 1744 1 chr5B.!!$F3 1681
7 TraesCS5A01G443800 chr5D 499446990 499449466 2476 False 1680.5 2422 88.7465 1 2515 2 chr5D.!!$F2 2514
8 TraesCS5A01G443800 chr5D 499955321 499957243 1922 True 1648.0 1648 82.6920 41 1953 1 chr5D.!!$R1 1912
9 TraesCS5A01G443800 chr5D 499652132 499653814 1682 False 1197.0 1197 80.0790 2 1744 1 chr5D.!!$F1 1742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 514 0.684479 TCCTGACCAGTCCCTGATCG 60.684 60.0 0.0 0.0 32.44 3.69 F
1300 1430 0.652465 GGTTCGTTCGTGTTTGCGTC 60.652 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1418 1548 0.175760 GCTGCACCGACAGGATCTTA 59.824 55.0 0.00 0.00 41.02 2.10 R
2727 3074 0.033366 AATTTTGGCCGGCAAGTCAC 59.967 50.0 30.85 10.31 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.807011 TGCATCCATAGATCATACGAAATCG 59.193 40.000 0.48 0.48 46.33 3.34
55 56 7.099120 TCGTGATGAAAATTTGATCTGAGAGA 58.901 34.615 6.71 0.00 0.00 3.10
80 86 1.825090 CAAGCCAGCTTGTATCACCA 58.175 50.000 21.55 0.00 45.91 4.17
129 135 1.012086 CACCGATCACTCCAATGCAG 58.988 55.000 0.00 0.00 0.00 4.41
138 144 4.464008 TCACTCCAATGCAGATTAATCCC 58.536 43.478 11.92 4.49 0.00 3.85
276 282 1.233285 GCAGGGCTGAACTCACACAG 61.233 60.000 0.00 0.00 37.22 3.66
404 414 3.955650 ACGTTAACCAGCTACATGACT 57.044 42.857 0.00 0.00 0.00 3.41
411 421 1.341209 CCAGCTACATGACTATGCCGA 59.659 52.381 0.00 0.00 37.85 5.54
504 514 0.684479 TCCTGACCAGTCCCTGATCG 60.684 60.000 0.00 0.00 32.44 3.69
539 549 4.513442 TCCCAGAATACTCAACCAAATCG 58.487 43.478 0.00 0.00 0.00 3.34
582 592 1.526887 CCATGGTCCGTGCCTACAT 59.473 57.895 2.57 0.00 0.00 2.29
945 1003 0.737804 TCAGCTCACGCATCTCTCTC 59.262 55.000 0.00 0.00 39.10 3.20
946 1004 0.740149 CAGCTCACGCATCTCTCTCT 59.260 55.000 0.00 0.00 39.10 3.10
987 1050 2.520741 GCTCTCCTCTCCCCTCGG 60.521 72.222 0.00 0.00 0.00 4.63
1022 1085 4.034258 GACTGACGTGGTCGCCGA 62.034 66.667 0.00 0.00 41.18 5.54
1081 1147 3.695606 TGGAGACCACGGCAGAGC 61.696 66.667 0.00 0.00 0.00 4.09
1300 1430 0.652465 GGTTCGTTCGTGTTTGCGTC 60.652 55.000 0.00 0.00 0.00 5.19
1418 1548 4.016706 CTCCCGGCCAACTTCCGT 62.017 66.667 2.24 0.00 45.09 4.69
1553 1698 3.127533 CCCGCGGCCAAGAAGAAG 61.128 66.667 22.85 0.00 0.00 2.85
1554 1699 3.127533 CCGCGGCCAAGAAGAAGG 61.128 66.667 14.67 0.00 0.00 3.46
1559 1704 2.672996 GCCAAGAAGAAGGCGCCA 60.673 61.111 31.54 0.00 41.70 5.69
1560 1705 2.694760 GCCAAGAAGAAGGCGCCAG 61.695 63.158 31.54 7.17 41.70 4.85
1561 1706 2.694760 CCAAGAAGAAGGCGCCAGC 61.695 63.158 31.54 20.08 44.18 4.85
1571 1716 3.435186 GCGCCAGCCAAGAAGACC 61.435 66.667 0.00 0.00 37.42 3.85
1572 1717 3.121030 CGCCAGCCAAGAAGACCG 61.121 66.667 0.00 0.00 0.00 4.79
1573 1718 3.435186 GCCAGCCAAGAAGACCGC 61.435 66.667 0.00 0.00 0.00 5.68
1574 1719 2.348998 CCAGCCAAGAAGACCGCT 59.651 61.111 0.00 0.00 0.00 5.52
1575 1720 1.596934 CCAGCCAAGAAGACCGCTA 59.403 57.895 0.00 0.00 0.00 4.26
1613 1758 2.348998 CCAGCCAAGAAGACCGCT 59.651 61.111 0.00 0.00 0.00 5.52
1614 1759 1.596934 CCAGCCAAGAAGACCGCTA 59.403 57.895 0.00 0.00 0.00 4.26
1615 1760 0.741221 CCAGCCAAGAAGACCGCTAC 60.741 60.000 0.00 0.00 0.00 3.58
1616 1761 0.741221 CAGCCAAGAAGACCGCTACC 60.741 60.000 0.00 0.00 0.00 3.18
1617 1762 1.192146 AGCCAAGAAGACCGCTACCA 61.192 55.000 0.00 0.00 0.00 3.25
1618 1763 0.321298 GCCAAGAAGACCGCTACCAA 60.321 55.000 0.00 0.00 0.00 3.67
1619 1764 1.726853 CCAAGAAGACCGCTACCAAG 58.273 55.000 0.00 0.00 0.00 3.61
1620 1765 1.275291 CCAAGAAGACCGCTACCAAGA 59.725 52.381 0.00 0.00 0.00 3.02
1621 1766 2.338500 CAAGAAGACCGCTACCAAGAC 58.662 52.381 0.00 0.00 0.00 3.01
1622 1767 0.896226 AGAAGACCGCTACCAAGACC 59.104 55.000 0.00 0.00 0.00 3.85
1623 1768 0.606604 GAAGACCGCTACCAAGACCA 59.393 55.000 0.00 0.00 0.00 4.02
1624 1769 1.001633 GAAGACCGCTACCAAGACCAA 59.998 52.381 0.00 0.00 0.00 3.67
1625 1809 0.608640 AGACCGCTACCAAGACCAAG 59.391 55.000 0.00 0.00 0.00 3.61
1632 1816 0.404040 TACCAAGACCAAGGCCAAGG 59.596 55.000 5.01 9.04 0.00 3.61
1634 1818 2.282462 AAGACCAAGGCCAAGGCG 60.282 61.111 5.01 0.00 43.06 5.52
2054 2355 2.061773 CTGTTCTGTGCTGTTAGTCGG 58.938 52.381 0.00 0.00 0.00 4.79
2073 2375 1.805945 GATGTCCGGCTGTGTCGAC 60.806 63.158 9.11 9.11 29.41 4.20
2082 2384 1.873863 CTGTGTCGACGGTGCTAGA 59.126 57.895 11.62 0.00 0.00 2.43
2105 2407 8.250143 AGACTGTAAATTTGAAATCTGGGTTT 57.750 30.769 0.00 0.00 0.00 3.27
2113 2415 1.273327 GAAATCTGGGTTTGGGTGCAG 59.727 52.381 0.00 0.00 0.00 4.41
2117 2419 4.966787 GGGTTTGGGTGCAGCGGA 62.967 66.667 10.24 0.00 0.00 5.54
2118 2420 2.676471 GGTTTGGGTGCAGCGGAT 60.676 61.111 10.24 0.00 0.00 4.18
2119 2421 2.700773 GGTTTGGGTGCAGCGGATC 61.701 63.158 10.24 0.00 0.00 3.36
2120 2422 1.971167 GTTTGGGTGCAGCGGATCA 60.971 57.895 10.24 0.00 0.00 2.92
2135 2437 3.567579 ATCACCGGTGCACCCCTTG 62.568 63.158 30.25 22.34 0.00 3.61
2150 2452 1.024271 CCTTGGTGTGTGTTGTGAGG 58.976 55.000 0.00 0.00 0.00 3.86
2159 2461 1.066071 TGTGTTGTGAGGAAACGGTGA 60.066 47.619 0.00 0.00 0.00 4.02
2186 2488 3.431922 TCGCGCTGTAGTAAGCTTATT 57.568 42.857 9.88 8.17 41.24 1.40
2187 2489 4.556942 TCGCGCTGTAGTAAGCTTATTA 57.443 40.909 9.88 7.05 41.24 0.98
2188 2490 5.117355 TCGCGCTGTAGTAAGCTTATTAT 57.883 39.130 9.88 1.93 41.24 1.28
2247 2569 7.920160 AATTTTAGCCCACAATTTACATTGG 57.080 32.000 6.56 0.00 43.82 3.16
2251 2573 3.056891 AGCCCACAATTTACATTGGTTCG 60.057 43.478 6.56 0.00 43.82 3.95
2252 2574 3.249917 CCCACAATTTACATTGGTTCGC 58.750 45.455 6.56 0.00 43.82 4.70
2259 2581 0.037590 TACATTGGTTCGCTTGCCCT 59.962 50.000 0.00 0.00 0.00 5.19
2271 2594 1.749063 GCTTGCCCTAATGTTGGTACC 59.251 52.381 4.43 4.43 0.00 3.34
2273 2596 0.985760 TGCCCTAATGTTGGTACCGT 59.014 50.000 7.57 0.00 0.00 4.83
2274 2597 1.339247 TGCCCTAATGTTGGTACCGTG 60.339 52.381 7.57 0.00 0.00 4.94
2287 2610 3.168193 GGTACCGTGCAATTGAAATTCG 58.832 45.455 10.34 0.00 0.00 3.34
2288 2611 3.365565 GGTACCGTGCAATTGAAATTCGT 60.366 43.478 10.34 0.00 0.00 3.85
2291 2614 3.049206 CCGTGCAATTGAAATTCGTGTT 58.951 40.909 10.34 0.00 0.00 3.32
2292 2615 3.119463 CCGTGCAATTGAAATTCGTGTTC 59.881 43.478 10.34 0.00 0.00 3.18
2296 2619 5.116074 GTGCAATTGAAATTCGTGTTCTCTG 59.884 40.000 10.34 0.00 0.00 3.35
2329 2655 6.811954 TCGGTATGATACTGCAAATCTTGTA 58.188 36.000 6.55 0.00 35.03 2.41
2336 2662 8.165239 TGATACTGCAAATCTTGTACTGTTTT 57.835 30.769 9.45 0.00 0.00 2.43
2339 2665 5.359576 ACTGCAAATCTTGTACTGTTTTGGA 59.640 36.000 16.77 14.67 0.00 3.53
2340 2666 6.040842 ACTGCAAATCTTGTACTGTTTTGGAT 59.959 34.615 16.77 8.07 29.31 3.41
2341 2667 6.446318 TGCAAATCTTGTACTGTTTTGGATC 58.554 36.000 16.77 0.00 0.00 3.36
2343 2669 6.583806 GCAAATCTTGTACTGTTTTGGATCAG 59.416 38.462 16.77 0.00 37.65 2.90
2344 2670 7.651808 CAAATCTTGTACTGTTTTGGATCAGT 58.348 34.615 0.00 0.00 45.21 3.41
2345 2671 8.783093 CAAATCTTGTACTGTTTTGGATCAGTA 58.217 33.333 0.00 0.00 43.39 2.74
2347 2673 7.297936 TCTTGTACTGTTTTGGATCAGTAGA 57.702 36.000 5.46 2.42 44.33 2.59
2349 2675 7.962964 TTGTACTGTTTTGGATCAGTAGAAG 57.037 36.000 9.63 0.00 44.33 2.85
2350 2676 7.297936 TGTACTGTTTTGGATCAGTAGAAGA 57.702 36.000 5.46 0.00 44.33 2.87
2401 2743 1.019278 GCCAAGCAAATCTCGTCGGA 61.019 55.000 0.00 0.00 0.00 4.55
2405 2747 2.386661 AGCAAATCTCGTCGGATGTT 57.613 45.000 0.00 0.00 0.00 2.71
2432 2774 1.475682 GTCCAACGTCTAGTAGGTGGG 59.524 57.143 19.11 11.33 38.27 4.61
2460 2807 4.937620 TGAGCTGTAAATAAGAAGGCTGTG 59.062 41.667 0.00 0.00 0.00 3.66
2477 2824 4.160626 GGCTGTGGTATTCTTCTCTGTACT 59.839 45.833 0.00 0.00 0.00 2.73
2478 2825 5.105752 GCTGTGGTATTCTTCTCTGTACTG 58.894 45.833 0.00 0.00 0.00 2.74
2479 2826 5.336849 GCTGTGGTATTCTTCTCTGTACTGT 60.337 44.000 0.00 0.00 0.00 3.55
2480 2827 6.127703 GCTGTGGTATTCTTCTCTGTACTGTA 60.128 42.308 0.00 0.00 0.00 2.74
2481 2828 7.154435 TGTGGTATTCTTCTCTGTACTGTAC 57.846 40.000 10.98 10.98 0.00 2.90
2487 2834 3.447586 TCTTCTCTGTACTGTACATGGCC 59.552 47.826 19.99 0.00 38.15 5.36
2506 2853 4.424566 GTGCGGCCGTCGGTTAGA 62.425 66.667 28.70 0.00 39.69 2.10
2510 2857 1.153706 CGGCCGTCGGTTAGAACAT 60.154 57.895 19.50 0.00 34.75 2.71
2512 2859 0.808847 GGCCGTCGGTTAGAACATCC 60.809 60.000 13.94 0.00 0.00 3.51
2513 2860 0.108520 GCCGTCGGTTAGAACATCCA 60.109 55.000 13.94 0.00 0.00 3.41
2514 2861 1.922570 CCGTCGGTTAGAACATCCAG 58.077 55.000 2.08 0.00 0.00 3.86
2515 2862 1.203994 CCGTCGGTTAGAACATCCAGT 59.796 52.381 2.08 0.00 0.00 4.00
2516 2863 2.259618 CGTCGGTTAGAACATCCAGTG 58.740 52.381 0.00 0.00 0.00 3.66
2517 2864 2.000447 GTCGGTTAGAACATCCAGTGC 59.000 52.381 0.00 0.00 0.00 4.40
2518 2865 0.999406 CGGTTAGAACATCCAGTGCG 59.001 55.000 0.00 0.00 0.00 5.34
2519 2866 1.403647 CGGTTAGAACATCCAGTGCGA 60.404 52.381 0.00 0.00 0.00 5.10
2520 2867 2.738643 CGGTTAGAACATCCAGTGCGAT 60.739 50.000 0.00 0.00 0.00 4.58
2521 2868 3.270877 GGTTAGAACATCCAGTGCGATT 58.729 45.455 0.00 0.00 0.00 3.34
2522 2869 3.689649 GGTTAGAACATCCAGTGCGATTT 59.310 43.478 0.00 0.00 0.00 2.17
2523 2870 4.156008 GGTTAGAACATCCAGTGCGATTTT 59.844 41.667 0.00 0.00 0.00 1.82
2524 2871 5.353123 GGTTAGAACATCCAGTGCGATTTTA 59.647 40.000 0.00 0.00 0.00 1.52
2525 2872 6.456988 GGTTAGAACATCCAGTGCGATTTTAG 60.457 42.308 0.00 0.00 0.00 1.85
2526 2873 4.832248 AGAACATCCAGTGCGATTTTAGA 58.168 39.130 0.00 0.00 0.00 2.10
2527 2874 4.631813 AGAACATCCAGTGCGATTTTAGAC 59.368 41.667 0.00 0.00 0.00 2.59
2528 2875 3.270877 ACATCCAGTGCGATTTTAGACC 58.729 45.455 0.00 0.00 0.00 3.85
2529 2876 2.004583 TCCAGTGCGATTTTAGACCG 57.995 50.000 0.00 0.00 0.00 4.79
2530 2877 1.274167 TCCAGTGCGATTTTAGACCGT 59.726 47.619 0.00 0.00 0.00 4.83
2531 2878 2.492881 TCCAGTGCGATTTTAGACCGTA 59.507 45.455 0.00 0.00 0.00 4.02
2532 2879 2.601763 CCAGTGCGATTTTAGACCGTAC 59.398 50.000 0.00 0.00 38.77 3.67
2533 2880 2.278094 CAGTGCGATTTTAGACCGTACG 59.722 50.000 8.69 8.69 42.22 3.67
2534 2881 2.095059 AGTGCGATTTTAGACCGTACGT 60.095 45.455 15.21 2.02 42.22 3.57
2535 2882 2.663119 GTGCGATTTTAGACCGTACGTT 59.337 45.455 15.21 0.00 0.00 3.99
2536 2883 3.851403 GTGCGATTTTAGACCGTACGTTA 59.149 43.478 15.21 0.93 0.00 3.18
2537 2884 4.323336 GTGCGATTTTAGACCGTACGTTAA 59.677 41.667 15.21 7.21 0.00 2.01
2538 2885 5.004726 GTGCGATTTTAGACCGTACGTTAAT 59.995 40.000 15.21 0.00 0.00 1.40
2539 2886 5.004630 TGCGATTTTAGACCGTACGTTAATG 59.995 40.000 15.21 0.29 0.00 1.90
2540 2887 5.229887 GCGATTTTAGACCGTACGTTAATGA 59.770 40.000 15.21 3.33 0.00 2.57
2541 2888 6.074676 GCGATTTTAGACCGTACGTTAATGAT 60.075 38.462 15.21 7.30 0.00 2.45
2542 2889 7.515684 GCGATTTTAGACCGTACGTTAATGATT 60.516 37.037 15.21 0.00 0.00 2.57
2543 2890 7.994894 CGATTTTAGACCGTACGTTAATGATTC 59.005 37.037 15.21 2.34 0.00 2.52
2544 2891 8.937634 ATTTTAGACCGTACGTTAATGATTCT 57.062 30.769 15.21 5.11 0.00 2.40
2545 2892 7.745022 TTTAGACCGTACGTTAATGATTCTG 57.255 36.000 15.21 0.00 0.00 3.02
2546 2893 4.110482 AGACCGTACGTTAATGATTCTGC 58.890 43.478 15.21 0.00 0.00 4.26
2547 2894 3.852286 ACCGTACGTTAATGATTCTGCA 58.148 40.909 15.21 0.00 0.00 4.41
2548 2895 3.615496 ACCGTACGTTAATGATTCTGCAC 59.385 43.478 15.21 0.00 0.00 4.57
2549 2896 3.000925 CCGTACGTTAATGATTCTGCACC 59.999 47.826 15.21 0.00 0.00 5.01
2550 2897 3.615056 CGTACGTTAATGATTCTGCACCA 59.385 43.478 7.22 0.00 0.00 4.17
2551 2898 4.259810 CGTACGTTAATGATTCTGCACCAG 60.260 45.833 7.22 0.00 0.00 4.00
2552 2899 2.420022 ACGTTAATGATTCTGCACCAGC 59.580 45.455 0.58 0.00 42.57 4.85
2553 2900 2.679837 CGTTAATGATTCTGCACCAGCT 59.320 45.455 0.00 0.00 42.74 4.24
2554 2901 3.486375 CGTTAATGATTCTGCACCAGCTG 60.486 47.826 6.78 6.78 42.74 4.24
2562 2909 3.599584 GCACCAGCTGCATGTGAT 58.400 55.556 21.35 0.00 46.29 3.06
2563 2910 1.888018 GCACCAGCTGCATGTGATT 59.112 52.632 21.35 0.00 46.29 2.57
2564 2911 0.245539 GCACCAGCTGCATGTGATTT 59.754 50.000 21.35 0.00 46.29 2.17
2565 2912 1.337447 GCACCAGCTGCATGTGATTTT 60.337 47.619 21.35 0.00 46.29 1.82
2566 2913 2.868839 GCACCAGCTGCATGTGATTTTT 60.869 45.455 21.35 0.00 46.29 1.94
2567 2914 2.991190 CACCAGCTGCATGTGATTTTTC 59.009 45.455 14.34 0.00 31.66 2.29
2568 2915 2.028748 ACCAGCTGCATGTGATTTTTCC 60.029 45.455 8.66 0.00 0.00 3.13
2569 2916 2.028839 CCAGCTGCATGTGATTTTTCCA 60.029 45.455 8.66 0.00 0.00 3.53
2570 2917 3.250744 CAGCTGCATGTGATTTTTCCAG 58.749 45.455 0.00 0.00 0.00 3.86
2571 2918 2.232941 AGCTGCATGTGATTTTTCCAGG 59.767 45.455 1.02 0.00 0.00 4.45
2572 2919 2.231964 GCTGCATGTGATTTTTCCAGGA 59.768 45.455 0.00 0.00 0.00 3.86
2573 2920 3.118884 GCTGCATGTGATTTTTCCAGGAT 60.119 43.478 0.00 0.00 0.00 3.24
2574 2921 4.098349 GCTGCATGTGATTTTTCCAGGATA 59.902 41.667 0.00 0.00 0.00 2.59
2575 2922 5.735354 GCTGCATGTGATTTTTCCAGGATAG 60.735 44.000 0.00 0.00 0.00 2.08
2576 2923 4.646040 TGCATGTGATTTTTCCAGGATAGG 59.354 41.667 0.00 0.00 0.00 2.57
2577 2924 4.646492 GCATGTGATTTTTCCAGGATAGGT 59.354 41.667 0.00 0.00 0.00 3.08
2578 2925 5.221126 GCATGTGATTTTTCCAGGATAGGTC 60.221 44.000 0.00 0.00 0.00 3.85
2579 2926 5.512942 TGTGATTTTTCCAGGATAGGTCA 57.487 39.130 0.00 0.00 0.00 4.02
2580 2927 5.500234 TGTGATTTTTCCAGGATAGGTCAG 58.500 41.667 0.00 0.00 0.00 3.51
2581 2928 4.884164 GTGATTTTTCCAGGATAGGTCAGG 59.116 45.833 0.00 0.00 0.00 3.86
2582 2929 4.788075 TGATTTTTCCAGGATAGGTCAGGA 59.212 41.667 0.00 0.00 0.00 3.86
2583 2930 5.252863 TGATTTTTCCAGGATAGGTCAGGAA 59.747 40.000 0.00 0.00 37.92 3.36
2584 2931 5.796502 TTTTTCCAGGATAGGTCAGGAAT 57.203 39.130 0.00 0.00 38.81 3.01
2585 2932 4.778213 TTTCCAGGATAGGTCAGGAATG 57.222 45.455 0.00 0.00 38.81 2.67
2586 2933 2.694397 TCCAGGATAGGTCAGGAATGG 58.306 52.381 0.00 0.00 30.15 3.16
2587 2934 1.701847 CCAGGATAGGTCAGGAATGGG 59.298 57.143 0.00 0.00 0.00 4.00
2588 2935 1.072965 CAGGATAGGTCAGGAATGGGC 59.927 57.143 0.00 0.00 0.00 5.36
2589 2936 0.035458 GGATAGGTCAGGAATGGGCG 59.965 60.000 0.00 0.00 0.00 6.13
2590 2937 0.035458 GATAGGTCAGGAATGGGCGG 59.965 60.000 0.00 0.00 0.00 6.13
2591 2938 0.399949 ATAGGTCAGGAATGGGCGGA 60.400 55.000 0.00 0.00 0.00 5.54
2592 2939 0.619255 TAGGTCAGGAATGGGCGGAA 60.619 55.000 0.00 0.00 0.00 4.30
2593 2940 1.452108 GGTCAGGAATGGGCGGAAG 60.452 63.158 0.00 0.00 0.00 3.46
2594 2941 1.299976 GTCAGGAATGGGCGGAAGT 59.700 57.895 0.00 0.00 0.00 3.01
2595 2942 0.322546 GTCAGGAATGGGCGGAAGTT 60.323 55.000 0.00 0.00 0.00 2.66
2596 2943 0.035439 TCAGGAATGGGCGGAAGTTC 60.035 55.000 0.00 0.00 0.00 3.01
2597 2944 0.322456 CAGGAATGGGCGGAAGTTCA 60.322 55.000 5.01 0.00 0.00 3.18
2598 2945 0.035056 AGGAATGGGCGGAAGTTCAG 60.035 55.000 5.01 1.36 0.00 3.02
2599 2946 0.035439 GGAATGGGCGGAAGTTCAGA 60.035 55.000 7.24 0.00 0.00 3.27
2600 2947 1.613255 GGAATGGGCGGAAGTTCAGAA 60.613 52.381 7.24 0.00 0.00 3.02
2601 2948 2.369394 GAATGGGCGGAAGTTCAGAAT 58.631 47.619 7.24 0.00 0.00 2.40
2602 2949 1.755179 ATGGGCGGAAGTTCAGAATG 58.245 50.000 7.24 0.00 37.54 2.67
2603 2950 0.322456 TGGGCGGAAGTTCAGAATGG 60.322 55.000 7.24 0.00 36.16 3.16
2604 2951 0.035439 GGGCGGAAGTTCAGAATGGA 60.035 55.000 7.24 0.00 36.16 3.41
2605 2952 1.613255 GGGCGGAAGTTCAGAATGGAA 60.613 52.381 7.24 0.00 36.16 3.53
2606 2953 1.740025 GGCGGAAGTTCAGAATGGAAG 59.260 52.381 7.24 0.00 36.16 3.46
2607 2954 1.740025 GCGGAAGTTCAGAATGGAAGG 59.260 52.381 7.24 0.00 36.16 3.46
2608 2955 1.740025 CGGAAGTTCAGAATGGAAGGC 59.260 52.381 5.01 0.00 36.16 4.35
2609 2956 1.740025 GGAAGTTCAGAATGGAAGGCG 59.260 52.381 5.01 0.00 36.16 5.52
2610 2957 1.740025 GAAGTTCAGAATGGAAGGCGG 59.260 52.381 0.00 0.00 36.16 6.13
2611 2958 0.035056 AGTTCAGAATGGAAGGCGGG 60.035 55.000 0.00 0.00 36.16 6.13
2612 2959 1.378514 TTCAGAATGGAAGGCGGGC 60.379 57.895 0.00 0.00 36.16 6.13
2613 2960 1.852157 TTCAGAATGGAAGGCGGGCT 61.852 55.000 0.00 0.00 36.16 5.19
2614 2961 1.821332 CAGAATGGAAGGCGGGCTC 60.821 63.158 3.91 0.00 0.00 4.70
2615 2962 2.517166 GAATGGAAGGCGGGCTCC 60.517 66.667 3.91 8.68 0.00 4.70
2616 2963 3.338250 AATGGAAGGCGGGCTCCA 61.338 61.111 19.45 19.45 45.65 3.86
2617 2964 2.837031 GAATGGAAGGCGGGCTCCAA 62.837 60.000 20.49 0.00 44.77 3.53
2618 2965 2.439553 AATGGAAGGCGGGCTCCAAA 62.440 55.000 20.49 3.49 44.77 3.28
2619 2966 2.282887 GGAAGGCGGGCTCCAAAA 60.283 61.111 3.91 0.00 0.00 2.44
2620 2967 2.343426 GGAAGGCGGGCTCCAAAAG 61.343 63.158 3.91 0.00 0.00 2.27
2631 2978 2.680312 CTCCAAAAGCTCGAGATCCA 57.320 50.000 18.75 0.00 0.00 3.41
2632 2979 2.275318 CTCCAAAAGCTCGAGATCCAC 58.725 52.381 18.75 0.00 0.00 4.02
2633 2980 1.002366 CCAAAAGCTCGAGATCCACG 58.998 55.000 18.75 0.00 0.00 4.94
2634 2981 1.404181 CCAAAAGCTCGAGATCCACGA 60.404 52.381 18.75 11.14 38.11 4.35
2635 2982 2.544685 CAAAAGCTCGAGATCCACGAT 58.455 47.619 18.75 0.00 39.02 3.73
2636 2983 2.215907 AAAGCTCGAGATCCACGATG 57.784 50.000 18.75 8.30 39.02 3.84
2637 2984 0.387202 AAGCTCGAGATCCACGATGG 59.613 55.000 18.75 0.00 39.02 3.51
2638 2985 0.753479 AGCTCGAGATCCACGATGGT 60.753 55.000 18.75 9.38 39.03 3.55
2639 2986 0.103208 GCTCGAGATCCACGATGGTT 59.897 55.000 18.75 0.00 39.03 3.67
2640 2987 1.471676 GCTCGAGATCCACGATGGTTT 60.472 52.381 18.75 0.00 39.03 3.27
2641 2988 2.464865 CTCGAGATCCACGATGGTTTC 58.535 52.381 6.58 0.00 39.03 2.78
2650 2997 1.941812 CGATGGTTTCGGCTATGGC 59.058 57.895 0.00 0.00 44.28 4.40
2667 3014 3.263941 CGGGAGCGTTTGGGAAAG 58.736 61.111 0.00 0.00 0.00 2.62
2668 3015 2.332654 CGGGAGCGTTTGGGAAAGG 61.333 63.158 0.00 0.00 0.00 3.11
2669 3016 1.977009 GGGAGCGTTTGGGAAAGGG 60.977 63.158 0.00 0.00 0.00 3.95
2670 3017 1.074248 GGAGCGTTTGGGAAAGGGA 59.926 57.895 0.00 0.00 0.00 4.20
2671 3018 0.538746 GGAGCGTTTGGGAAAGGGAA 60.539 55.000 0.00 0.00 0.00 3.97
2672 3019 0.881796 GAGCGTTTGGGAAAGGGAAG 59.118 55.000 0.00 0.00 0.00 3.46
2673 3020 0.539669 AGCGTTTGGGAAAGGGAAGG 60.540 55.000 0.00 0.00 0.00 3.46
2674 3021 1.964448 CGTTTGGGAAAGGGAAGGC 59.036 57.895 0.00 0.00 0.00 4.35
2675 3022 0.825840 CGTTTGGGAAAGGGAAGGCA 60.826 55.000 0.00 0.00 0.00 4.75
2676 3023 0.969149 GTTTGGGAAAGGGAAGGCAG 59.031 55.000 0.00 0.00 0.00 4.85
2677 3024 0.831711 TTTGGGAAAGGGAAGGCAGC 60.832 55.000 0.00 0.00 0.00 5.25
2678 3025 2.363018 GGGAAAGGGAAGGCAGCC 60.363 66.667 1.84 1.84 0.00 4.85
2679 3026 2.766660 GGAAAGGGAAGGCAGCCT 59.233 61.111 8.70 8.70 33.87 4.58
2680 3027 1.680314 GGAAAGGGAAGGCAGCCTG 60.680 63.158 17.05 0.00 32.13 4.85
2681 3028 1.680314 GAAAGGGAAGGCAGCCTGG 60.680 63.158 17.05 0.00 32.13 4.45
2682 3029 3.229659 AAAGGGAAGGCAGCCTGGG 62.230 63.158 17.05 0.00 32.13 4.45
2690 3037 4.684134 GCAGCCTGGGCCTTTGGA 62.684 66.667 4.53 0.00 43.17 3.53
2691 3038 2.118076 CAGCCTGGGCCTTTGGAA 59.882 61.111 4.53 0.00 43.17 3.53
2692 3039 2.118294 AGCCTGGGCCTTTGGAAC 59.882 61.111 4.53 0.00 43.17 3.62
2693 3040 3.373565 GCCTGGGCCTTTGGAACG 61.374 66.667 4.53 0.00 34.56 3.95
2694 3041 2.676471 CCTGGGCCTTTGGAACGG 60.676 66.667 4.53 0.00 0.00 4.44
2695 3042 2.115266 CTGGGCCTTTGGAACGGT 59.885 61.111 4.53 0.00 0.00 4.83
2696 3043 1.971695 CTGGGCCTTTGGAACGGTC 60.972 63.158 4.53 0.00 0.00 4.79
2697 3044 2.675423 GGGCCTTTGGAACGGTCC 60.675 66.667 14.24 14.24 45.21 4.46
2705 3052 3.801620 GGAACGGTCCAGAAGGGA 58.198 61.111 16.61 0.00 44.26 4.20
2713 3060 3.324246 TCCAGAAGGGACAGGGATC 57.676 57.895 0.00 0.00 42.15 3.36
2714 3061 0.719015 TCCAGAAGGGACAGGGATCT 59.281 55.000 0.00 0.00 42.15 2.75
2715 3062 0.835941 CCAGAAGGGACAGGGATCTG 59.164 60.000 0.00 0.00 46.10 2.90
2716 3063 0.179936 CAGAAGGGACAGGGATCTGC 59.820 60.000 0.00 0.00 44.59 4.26
2717 3064 0.252881 AGAAGGGACAGGGATCTGCA 60.253 55.000 0.00 0.00 44.59 4.41
2718 3065 0.842635 GAAGGGACAGGGATCTGCAT 59.157 55.000 0.00 0.00 44.59 3.96
2719 3066 0.549950 AAGGGACAGGGATCTGCATG 59.450 55.000 0.00 0.00 44.59 4.06
2720 3067 0.622738 AGGGACAGGGATCTGCATGT 60.623 55.000 0.00 0.00 44.59 3.21
2721 3068 0.179034 GGGACAGGGATCTGCATGTC 60.179 60.000 7.81 7.81 44.59 3.06
2722 3069 0.543277 GGACAGGGATCTGCATGTCA 59.457 55.000 16.34 0.00 44.59 3.58
2723 3070 1.661341 GACAGGGATCTGCATGTCAC 58.339 55.000 10.92 2.22 44.59 3.67
2724 3071 0.254178 ACAGGGATCTGCATGTCACC 59.746 55.000 0.00 0.00 44.59 4.02
2725 3072 0.812811 CAGGGATCTGCATGTCACCG 60.813 60.000 0.00 0.00 33.86 4.94
2726 3073 1.221840 GGGATCTGCATGTCACCGT 59.778 57.895 0.00 0.00 0.00 4.83
2727 3074 1.091771 GGGATCTGCATGTCACCGTG 61.092 60.000 0.00 0.00 0.00 4.94
2728 3075 0.391661 GGATCTGCATGTCACCGTGT 60.392 55.000 0.00 0.00 0.00 4.49
2729 3076 0.723414 GATCTGCATGTCACCGTGTG 59.277 55.000 0.00 0.00 34.45 3.82
2730 3077 0.321346 ATCTGCATGTCACCGTGTGA 59.679 50.000 0.00 3.02 40.50 3.58
2737 3084 2.279851 TCACCGTGTGACTTGCCG 60.280 61.111 0.00 0.00 37.67 5.69
2738 3085 3.345808 CACCGTGTGACTTGCCGG 61.346 66.667 0.00 0.00 45.72 6.13
2742 3089 2.904866 GTGTGACTTGCCGGCCAA 60.905 61.111 26.77 17.05 0.00 4.52
2743 3090 2.124109 TGTGACTTGCCGGCCAAA 60.124 55.556 26.77 12.00 31.94 3.28
2744 3091 1.754621 TGTGACTTGCCGGCCAAAA 60.755 52.632 26.77 11.15 31.94 2.44
2745 3092 1.112315 TGTGACTTGCCGGCCAAAAT 61.112 50.000 26.77 0.80 31.94 1.82
2746 3093 0.033366 GTGACTTGCCGGCCAAAATT 59.967 50.000 26.77 5.66 31.94 1.82
2747 3094 0.316841 TGACTTGCCGGCCAAAATTC 59.683 50.000 26.77 15.57 31.94 2.17
2748 3095 0.316841 GACTTGCCGGCCAAAATTCA 59.683 50.000 26.77 0.00 31.94 2.57
2749 3096 0.755686 ACTTGCCGGCCAAAATTCAA 59.244 45.000 26.77 7.78 31.94 2.69
2750 3097 1.139853 ACTTGCCGGCCAAAATTCAAA 59.860 42.857 26.77 6.96 31.94 2.69
2751 3098 2.224499 ACTTGCCGGCCAAAATTCAAAT 60.224 40.909 26.77 0.00 31.94 2.32
2752 3099 2.557920 TGCCGGCCAAAATTCAAATT 57.442 40.000 26.77 0.00 0.00 1.82
2753 3100 2.856222 TGCCGGCCAAAATTCAAATTT 58.144 38.095 26.77 0.00 40.15 1.82
2754 3101 4.008074 TGCCGGCCAAAATTCAAATTTA 57.992 36.364 26.77 0.00 37.62 1.40
2755 3102 4.389374 TGCCGGCCAAAATTCAAATTTAA 58.611 34.783 26.77 0.00 37.62 1.52
2756 3103 4.821805 TGCCGGCCAAAATTCAAATTTAAA 59.178 33.333 26.77 0.00 37.62 1.52
2757 3104 5.150683 GCCGGCCAAAATTCAAATTTAAAC 58.849 37.500 18.11 0.00 37.62 2.01
2758 3105 5.278022 GCCGGCCAAAATTCAAATTTAAACA 60.278 36.000 18.11 0.00 37.62 2.83
2759 3106 6.569418 GCCGGCCAAAATTCAAATTTAAACAT 60.569 34.615 18.11 0.00 37.62 2.71
2760 3107 7.366513 CCGGCCAAAATTCAAATTTAAACATT 58.633 30.769 2.24 0.00 37.62 2.71
2761 3108 8.507249 CCGGCCAAAATTCAAATTTAAACATTA 58.493 29.630 2.24 0.00 37.62 1.90
2799 3146 6.897259 AAAAATCATGCATGTTCATAGCAC 57.103 33.333 25.43 0.00 41.60 4.40
2800 3147 5.585820 AAATCATGCATGTTCATAGCACA 57.414 34.783 25.43 3.20 41.60 4.57
2801 3148 5.784578 AATCATGCATGTTCATAGCACAT 57.215 34.783 25.43 5.53 41.60 3.21
2802 3149 6.887626 AATCATGCATGTTCATAGCACATA 57.112 33.333 25.43 2.45 41.60 2.29
2803 3150 7.462571 AATCATGCATGTTCATAGCACATAT 57.537 32.000 25.43 4.81 41.60 1.78
2804 3151 6.887626 TCATGCATGTTCATAGCACATATT 57.112 33.333 25.43 0.00 41.60 1.28
2805 3152 7.982761 TCATGCATGTTCATAGCACATATTA 57.017 32.000 25.43 0.00 41.60 0.98
2806 3153 8.393671 TCATGCATGTTCATAGCACATATTAA 57.606 30.769 25.43 0.00 41.60 1.40
2807 3154 8.848182 TCATGCATGTTCATAGCACATATTAAA 58.152 29.630 25.43 0.00 41.60 1.52
2808 3155 9.465985 CATGCATGTTCATAGCACATATTAAAA 57.534 29.630 18.91 0.00 41.60 1.52
2848 3195 8.948853 TTCAGATCAAAATTCGAAACATACAC 57.051 30.769 0.00 0.00 0.00 2.90
2849 3196 7.526608 TCAGATCAAAATTCGAAACATACACC 58.473 34.615 0.00 0.00 0.00 4.16
2850 3197 7.174080 TCAGATCAAAATTCGAAACATACACCA 59.826 33.333 0.00 0.00 0.00 4.17
2851 3198 7.807433 CAGATCAAAATTCGAAACATACACCAA 59.193 33.333 0.00 0.00 0.00 3.67
2852 3199 8.023128 AGATCAAAATTCGAAACATACACCAAG 58.977 33.333 0.00 0.00 0.00 3.61
2853 3200 7.265647 TCAAAATTCGAAACATACACCAAGA 57.734 32.000 0.00 0.00 0.00 3.02
2854 3201 7.708051 TCAAAATTCGAAACATACACCAAGAA 58.292 30.769 0.00 0.00 0.00 2.52
2855 3202 7.860373 TCAAAATTCGAAACATACACCAAGAAG 59.140 33.333 0.00 0.00 0.00 2.85
2856 3203 4.742438 TTCGAAACATACACCAAGAAGC 57.258 40.909 0.00 0.00 0.00 3.86
2857 3204 3.734463 TCGAAACATACACCAAGAAGCA 58.266 40.909 0.00 0.00 0.00 3.91
2858 3205 4.130857 TCGAAACATACACCAAGAAGCAA 58.869 39.130 0.00 0.00 0.00 3.91
2859 3206 4.576873 TCGAAACATACACCAAGAAGCAAA 59.423 37.500 0.00 0.00 0.00 3.68
2860 3207 5.066634 TCGAAACATACACCAAGAAGCAAAA 59.933 36.000 0.00 0.00 0.00 2.44
2861 3208 5.746245 CGAAACATACACCAAGAAGCAAAAA 59.254 36.000 0.00 0.00 0.00 1.94
2901 3248 9.599866 TGTGAATAGTATACAGAGAACCATTTG 57.400 33.333 5.50 0.00 0.00 2.32
2902 3249 8.552034 GTGAATAGTATACAGAGAACCATTTGC 58.448 37.037 5.50 0.00 0.00 3.68
2903 3250 8.264347 TGAATAGTATACAGAGAACCATTTGCA 58.736 33.333 5.50 0.00 0.00 4.08
2904 3251 9.109393 GAATAGTATACAGAGAACCATTTGCAA 57.891 33.333 5.50 0.00 0.00 4.08
2905 3252 9.632638 AATAGTATACAGAGAACCATTTGCAAT 57.367 29.630 0.00 0.00 0.00 3.56
2906 3253 7.944729 AGTATACAGAGAACCATTTGCAATT 57.055 32.000 0.00 0.00 0.00 2.32
2908 3255 9.632638 AGTATACAGAGAACCATTTGCAATTAT 57.367 29.630 0.00 0.00 0.00 1.28
2911 3258 7.230849 ACAGAGAACCATTTGCAATTATTCA 57.769 32.000 0.00 0.00 0.00 2.57
2912 3259 7.844009 ACAGAGAACCATTTGCAATTATTCAT 58.156 30.769 0.00 0.00 0.00 2.57
2913 3260 8.970020 ACAGAGAACCATTTGCAATTATTCATA 58.030 29.630 0.00 0.00 0.00 2.15
2914 3261 9.806203 CAGAGAACCATTTGCAATTATTCATAA 57.194 29.630 0.00 0.00 0.00 1.90
2915 3262 9.807649 AGAGAACCATTTGCAATTATTCATAAC 57.192 29.630 0.00 0.00 0.00 1.89
2916 3263 9.585099 GAGAACCATTTGCAATTATTCATAACA 57.415 29.630 0.00 0.00 0.00 2.41
2917 3264 9.590451 AGAACCATTTGCAATTATTCATAACAG 57.410 29.630 0.00 0.00 0.00 3.16
2918 3265 9.585099 GAACCATTTGCAATTATTCATAACAGA 57.415 29.630 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.891720 GCTTGTTCTATCTCTCAGATCAAATTT 58.108 33.333 0.00 0.00 36.20 1.82
80 86 0.790993 TGGTTGGGGAGAGTCTACCT 59.209 55.000 21.30 0.00 34.20 3.08
129 135 7.156876 TGTCACATTTGAGTTGGGATTAATC 57.843 36.000 6.93 6.93 30.10 1.75
138 144 4.383850 TTGGGTTGTCACATTTGAGTTG 57.616 40.909 0.00 0.00 30.10 3.16
241 247 1.856265 CTGCTTTGCACCGTTCTCCC 61.856 60.000 0.00 0.00 33.79 4.30
366 376 2.428171 ACGTAGCAACCCGTACATGTAT 59.572 45.455 9.18 0.00 35.16 2.29
369 379 1.717194 AACGTAGCAACCCGTACATG 58.283 50.000 0.00 0.00 36.04 3.21
404 414 5.568482 CGAACAATGAGATTTTTCGGCATA 58.432 37.500 8.90 0.00 44.31 3.14
411 421 2.556622 ACCGGCGAACAATGAGATTTTT 59.443 40.909 9.30 0.00 0.00 1.94
504 514 1.821332 CTGGGAGAAATGAGCCGGC 60.821 63.158 21.89 21.89 0.00 6.13
539 549 4.725556 TGTAACGAGATTGAGTTTGTGC 57.274 40.909 0.00 0.00 0.00 4.57
582 592 6.199908 CGTTTGGAGTGTAAATTTTTGCATCA 59.800 34.615 0.00 0.00 35.32 3.07
619 629 3.636282 TTTCCGATCGAATATCGCTCA 57.364 42.857 18.66 0.00 40.21 4.26
864 894 4.160252 GGTGGTTAAATAGTGGGAGACGTA 59.840 45.833 0.00 0.00 0.00 3.57
945 1003 2.359107 TTGCTTGCCGGAGCTGAG 60.359 61.111 15.49 1.74 43.11 3.35
946 1004 2.669569 GTTGCTTGCCGGAGCTGA 60.670 61.111 15.49 2.77 43.11 4.26
987 1050 2.877691 GACATTGCAGCGGGGAAC 59.122 61.111 0.00 0.00 0.00 3.62
1300 1430 0.738762 CTCCGACACCATCTGCACAG 60.739 60.000 0.00 0.00 0.00 3.66
1418 1548 0.175760 GCTGCACCGACAGGATCTTA 59.824 55.000 0.00 0.00 41.02 2.10
1544 1689 2.873288 GCTGGCGCCTTCTTCTTG 59.127 61.111 29.70 8.27 0.00 3.02
1554 1699 3.435186 GGTCTTCTTGGCTGGCGC 61.435 66.667 0.00 0.00 0.00 6.53
1555 1700 3.121030 CGGTCTTCTTGGCTGGCG 61.121 66.667 0.00 0.00 0.00 5.69
1556 1701 2.521958 TAGCGGTCTTCTTGGCTGGC 62.522 60.000 0.00 0.00 36.97 4.85
1557 1702 0.741221 GTAGCGGTCTTCTTGGCTGG 60.741 60.000 0.00 0.00 36.97 4.85
1558 1703 0.741221 GGTAGCGGTCTTCTTGGCTG 60.741 60.000 0.00 0.00 36.97 4.85
1559 1704 1.192146 TGGTAGCGGTCTTCTTGGCT 61.192 55.000 0.00 0.00 39.44 4.75
1560 1705 0.321298 TTGGTAGCGGTCTTCTTGGC 60.321 55.000 0.00 0.00 0.00 4.52
1561 1706 1.275291 TCTTGGTAGCGGTCTTCTTGG 59.725 52.381 0.00 0.00 0.00 3.61
1562 1707 2.338500 GTCTTGGTAGCGGTCTTCTTG 58.662 52.381 0.00 0.00 0.00 3.02
1563 1708 1.275573 GGTCTTGGTAGCGGTCTTCTT 59.724 52.381 0.00 0.00 0.00 2.52
1564 1709 0.896226 GGTCTTGGTAGCGGTCTTCT 59.104 55.000 0.00 0.00 0.00 2.85
1565 1710 0.606604 TGGTCTTGGTAGCGGTCTTC 59.393 55.000 0.00 0.00 0.00 2.87
1566 1711 1.002087 CTTGGTCTTGGTAGCGGTCTT 59.998 52.381 0.00 0.00 0.00 3.01
1567 1712 0.608640 CTTGGTCTTGGTAGCGGTCT 59.391 55.000 0.00 0.00 0.00 3.85
1568 1713 0.391263 CCTTGGTCTTGGTAGCGGTC 60.391 60.000 0.00 0.00 0.00 4.79
1569 1714 1.677552 CCTTGGTCTTGGTAGCGGT 59.322 57.895 0.00 0.00 0.00 5.68
1570 1715 1.745489 GCCTTGGTCTTGGTAGCGG 60.745 63.158 0.00 0.00 0.00 5.52
1571 1716 1.745489 GGCCTTGGTCTTGGTAGCG 60.745 63.158 0.00 0.00 0.00 4.26
1572 1717 0.251165 TTGGCCTTGGTCTTGGTAGC 60.251 55.000 3.32 0.00 0.00 3.58
1573 1718 1.614317 CCTTGGCCTTGGTCTTGGTAG 60.614 57.143 3.32 0.00 0.00 3.18
1574 1719 0.404040 CCTTGGCCTTGGTCTTGGTA 59.596 55.000 3.32 0.00 0.00 3.25
1575 1720 1.153756 CCTTGGCCTTGGTCTTGGT 59.846 57.895 3.32 0.00 0.00 3.67
1613 1758 0.404040 CCTTGGCCTTGGTCTTGGTA 59.596 55.000 3.32 0.00 0.00 3.25
1614 1759 1.153756 CCTTGGCCTTGGTCTTGGT 59.846 57.895 3.32 0.00 0.00 3.67
1615 1760 2.278330 GCCTTGGCCTTGGTCTTGG 61.278 63.158 3.32 0.00 0.00 3.61
1616 1761 2.629656 CGCCTTGGCCTTGGTCTTG 61.630 63.158 3.32 0.00 0.00 3.02
1617 1762 2.282462 CGCCTTGGCCTTGGTCTT 60.282 61.111 3.32 0.00 0.00 3.01
1732 1937 4.740822 CCTTGGTCTTGGCGGGGG 62.741 72.222 0.00 0.00 0.00 5.40
2033 2334 2.288213 CCGACTAACAGCACAGAACAGA 60.288 50.000 0.00 0.00 0.00 3.41
2054 2355 2.509336 CGACACAGCCGGACATCC 60.509 66.667 5.05 0.00 0.00 3.51
2073 2375 5.856126 TTCAAATTTACAGTCTAGCACCG 57.144 39.130 0.00 0.00 0.00 4.94
2082 2384 7.216494 CCAAACCCAGATTTCAAATTTACAGT 58.784 34.615 0.00 0.00 0.00 3.55
2105 2407 4.408821 GGTGATCCGCTGCACCCA 62.409 66.667 0.00 0.00 46.91 4.51
2117 2419 3.256960 AAGGGGTGCACCGGTGAT 61.257 61.111 38.30 12.50 41.60 3.06
2118 2420 4.263572 CAAGGGGTGCACCGGTGA 62.264 66.667 38.30 19.89 41.60 4.02
2135 2437 1.063469 CGTTTCCTCACAACACACACC 59.937 52.381 0.00 0.00 0.00 4.16
2150 2452 1.978697 CGATCGTCGTCACCGTTTC 59.021 57.895 7.03 0.00 34.72 2.78
2159 2461 1.423721 TACTACAGCGCGATCGTCGT 61.424 55.000 24.94 9.69 42.81 4.34
2186 2488 8.871629 ACCCAATTCAGTTACACAAATACATA 57.128 30.769 0.00 0.00 0.00 2.29
2187 2489 7.775053 ACCCAATTCAGTTACACAAATACAT 57.225 32.000 0.00 0.00 0.00 2.29
2188 2490 8.693120 TTACCCAATTCAGTTACACAAATACA 57.307 30.769 0.00 0.00 0.00 2.29
2223 2526 7.457561 ACCAATGTAAATTGTGGGCTAAAATT 58.542 30.769 4.91 0.00 35.32 1.82
2232 2535 4.173036 AGCGAACCAATGTAAATTGTGG 57.827 40.909 4.91 0.00 37.17 4.17
2237 2559 2.094234 GGGCAAGCGAACCAATGTAAAT 60.094 45.455 0.00 0.00 0.00 1.40
2247 2569 1.135402 CCAACATTAGGGCAAGCGAAC 60.135 52.381 0.00 0.00 0.00 3.95
2251 2573 1.749063 GGTACCAACATTAGGGCAAGC 59.251 52.381 7.15 0.00 0.00 4.01
2252 2574 2.014128 CGGTACCAACATTAGGGCAAG 58.986 52.381 13.54 0.00 0.00 4.01
2259 2581 4.072839 TCAATTGCACGGTACCAACATTA 58.927 39.130 13.54 0.00 0.00 1.90
2271 2594 3.974401 AGAACACGAATTTCAATTGCACG 59.026 39.130 0.00 4.57 0.00 5.34
2273 2596 5.214417 CAGAGAACACGAATTTCAATTGCA 58.786 37.500 0.00 0.00 0.00 4.08
2274 2597 5.116074 CACAGAGAACACGAATTTCAATTGC 59.884 40.000 0.00 0.00 0.00 3.56
2287 2610 2.480419 CCGAAATCACCACAGAGAACAC 59.520 50.000 0.00 0.00 0.00 3.32
2288 2611 2.104111 ACCGAAATCACCACAGAGAACA 59.896 45.455 0.00 0.00 0.00 3.18
2291 2614 3.767131 TCATACCGAAATCACCACAGAGA 59.233 43.478 0.00 0.00 0.00 3.10
2292 2615 4.123497 TCATACCGAAATCACCACAGAG 57.877 45.455 0.00 0.00 0.00 3.35
2296 2619 4.211374 GCAGTATCATACCGAAATCACCAC 59.789 45.833 0.00 0.00 0.00 4.16
2329 2655 7.939039 TCAAATCTTCTACTGATCCAAAACAGT 59.061 33.333 0.00 0.00 46.81 3.55
2336 2662 7.562821 TCAGATCTCAAATCTTCTACTGATCCA 59.437 37.037 0.00 0.00 32.12 3.41
2401 2743 4.008074 AGACGTTGGACTGAATCAACAT 57.992 40.909 0.00 0.00 42.22 2.71
2405 2747 4.398358 CCTACTAGACGTTGGACTGAATCA 59.602 45.833 0.00 0.00 40.44 2.57
2432 2774 8.125448 CAGCCTTCTTATTTACAGCTCATAAAC 58.875 37.037 2.50 0.00 0.00 2.01
2460 2807 7.203910 CCATGTACAGTACAGAGAAGAATACC 58.796 42.308 18.30 0.00 42.77 2.73
2477 2824 4.769063 CCGCACCGGCCATGTACA 62.769 66.667 0.00 0.00 41.17 2.90
2506 2853 3.689649 GGTCTAAAATCGCACTGGATGTT 59.310 43.478 0.00 0.00 0.00 2.71
2510 2857 1.274167 ACGGTCTAAAATCGCACTGGA 59.726 47.619 0.00 0.00 0.00 3.86
2512 2859 2.278094 CGTACGGTCTAAAATCGCACTG 59.722 50.000 7.57 0.00 0.00 3.66
2513 2860 2.095059 ACGTACGGTCTAAAATCGCACT 60.095 45.455 21.06 0.00 0.00 4.40
2514 2861 2.253603 ACGTACGGTCTAAAATCGCAC 58.746 47.619 21.06 0.00 0.00 5.34
2515 2862 2.634982 ACGTACGGTCTAAAATCGCA 57.365 45.000 21.06 0.00 0.00 5.10
2516 2863 5.229887 TCATTAACGTACGGTCTAAAATCGC 59.770 40.000 21.06 0.00 0.00 4.58
2517 2864 6.795053 TCATTAACGTACGGTCTAAAATCG 57.205 37.500 21.06 5.20 0.00 3.34
2518 2865 9.028185 AGAATCATTAACGTACGGTCTAAAATC 57.972 33.333 21.06 8.86 0.00 2.17
2519 2866 8.814235 CAGAATCATTAACGTACGGTCTAAAAT 58.186 33.333 21.06 6.72 0.00 1.82
2520 2867 7.201461 GCAGAATCATTAACGTACGGTCTAAAA 60.201 37.037 21.06 4.24 0.00 1.52
2521 2868 6.254157 GCAGAATCATTAACGTACGGTCTAAA 59.746 38.462 21.06 4.66 0.00 1.85
2522 2869 5.745294 GCAGAATCATTAACGTACGGTCTAA 59.255 40.000 21.06 13.71 0.00 2.10
2523 2870 5.163632 TGCAGAATCATTAACGTACGGTCTA 60.164 40.000 21.06 5.28 0.00 2.59
2524 2871 4.110482 GCAGAATCATTAACGTACGGTCT 58.890 43.478 21.06 6.12 0.00 3.85
2525 2872 3.861113 TGCAGAATCATTAACGTACGGTC 59.139 43.478 21.06 0.00 0.00 4.79
2526 2873 3.615496 GTGCAGAATCATTAACGTACGGT 59.385 43.478 21.06 16.91 0.00 4.83
2527 2874 3.000925 GGTGCAGAATCATTAACGTACGG 59.999 47.826 21.06 0.68 0.00 4.02
2528 2875 3.615056 TGGTGCAGAATCATTAACGTACG 59.385 43.478 15.01 15.01 0.00 3.67
2529 2876 4.494199 GCTGGTGCAGAATCATTAACGTAC 60.494 45.833 0.00 0.00 39.41 3.67
2530 2877 3.621268 GCTGGTGCAGAATCATTAACGTA 59.379 43.478 0.00 0.00 39.41 3.57
2531 2878 2.420022 GCTGGTGCAGAATCATTAACGT 59.580 45.455 0.00 0.00 39.41 3.99
2532 2879 2.679837 AGCTGGTGCAGAATCATTAACG 59.320 45.455 0.00 0.00 42.74 3.18
2533 2880 4.025015 CAGCTGGTGCAGAATCATTAAC 57.975 45.455 5.57 0.00 42.74 2.01
2546 2893 2.736144 AAAATCACATGCAGCTGGTG 57.264 45.000 17.12 15.05 0.00 4.17
2547 2894 2.028748 GGAAAAATCACATGCAGCTGGT 60.029 45.455 17.12 1.48 0.00 4.00
2548 2895 2.028839 TGGAAAAATCACATGCAGCTGG 60.029 45.455 17.12 0.73 0.00 4.85
2549 2896 3.250744 CTGGAAAAATCACATGCAGCTG 58.749 45.455 10.11 10.11 0.00 4.24
2550 2897 2.232941 CCTGGAAAAATCACATGCAGCT 59.767 45.455 0.00 0.00 31.93 4.24
2551 2898 2.231964 TCCTGGAAAAATCACATGCAGC 59.768 45.455 0.00 0.00 31.93 5.25
2552 2899 4.730949 ATCCTGGAAAAATCACATGCAG 57.269 40.909 0.00 0.00 32.93 4.41
2553 2900 4.646040 CCTATCCTGGAAAAATCACATGCA 59.354 41.667 0.00 0.00 0.00 3.96
2554 2901 4.646492 ACCTATCCTGGAAAAATCACATGC 59.354 41.667 0.00 0.00 0.00 4.06
2555 2902 5.887598 TGACCTATCCTGGAAAAATCACATG 59.112 40.000 0.00 0.00 0.00 3.21
2556 2903 6.078456 TGACCTATCCTGGAAAAATCACAT 57.922 37.500 0.00 0.00 0.00 3.21
2557 2904 5.500234 CTGACCTATCCTGGAAAAATCACA 58.500 41.667 0.00 0.00 0.00 3.58
2558 2905 4.884164 CCTGACCTATCCTGGAAAAATCAC 59.116 45.833 0.00 0.00 0.00 3.06
2559 2906 4.788075 TCCTGACCTATCCTGGAAAAATCA 59.212 41.667 0.00 2.32 0.00 2.57
2560 2907 5.373812 TCCTGACCTATCCTGGAAAAATC 57.626 43.478 0.00 0.00 0.00 2.17
2561 2908 5.796502 TTCCTGACCTATCCTGGAAAAAT 57.203 39.130 0.00 0.00 35.09 1.82
2562 2909 5.509498 CATTCCTGACCTATCCTGGAAAAA 58.491 41.667 0.00 0.00 38.85 1.94
2563 2910 4.079787 CCATTCCTGACCTATCCTGGAAAA 60.080 45.833 0.00 0.00 38.85 2.29
2564 2911 3.459598 CCATTCCTGACCTATCCTGGAAA 59.540 47.826 0.00 0.00 38.85 3.13
2565 2912 3.048600 CCATTCCTGACCTATCCTGGAA 58.951 50.000 0.00 0.00 39.35 3.53
2566 2913 2.694397 CCATTCCTGACCTATCCTGGA 58.306 52.381 0.00 0.00 0.00 3.86
2567 2914 1.701847 CCCATTCCTGACCTATCCTGG 59.298 57.143 0.00 0.00 0.00 4.45
2568 2915 1.072965 GCCCATTCCTGACCTATCCTG 59.927 57.143 0.00 0.00 0.00 3.86
2569 2916 1.439543 GCCCATTCCTGACCTATCCT 58.560 55.000 0.00 0.00 0.00 3.24
2570 2917 0.035458 CGCCCATTCCTGACCTATCC 59.965 60.000 0.00 0.00 0.00 2.59
2571 2918 0.035458 CCGCCCATTCCTGACCTATC 59.965 60.000 0.00 0.00 0.00 2.08
2572 2919 0.399949 TCCGCCCATTCCTGACCTAT 60.400 55.000 0.00 0.00 0.00 2.57
2573 2920 0.619255 TTCCGCCCATTCCTGACCTA 60.619 55.000 0.00 0.00 0.00 3.08
2574 2921 1.915078 CTTCCGCCCATTCCTGACCT 61.915 60.000 0.00 0.00 0.00 3.85
2575 2922 1.452108 CTTCCGCCCATTCCTGACC 60.452 63.158 0.00 0.00 0.00 4.02
2576 2923 0.322546 AACTTCCGCCCATTCCTGAC 60.323 55.000 0.00 0.00 0.00 3.51
2577 2924 0.035439 GAACTTCCGCCCATTCCTGA 60.035 55.000 0.00 0.00 0.00 3.86
2578 2925 0.322456 TGAACTTCCGCCCATTCCTG 60.322 55.000 0.00 0.00 0.00 3.86
2579 2926 0.035056 CTGAACTTCCGCCCATTCCT 60.035 55.000 0.00 0.00 0.00 3.36
2580 2927 0.035439 TCTGAACTTCCGCCCATTCC 60.035 55.000 0.00 0.00 0.00 3.01
2581 2928 1.821216 TTCTGAACTTCCGCCCATTC 58.179 50.000 0.00 0.00 0.00 2.67
2582 2929 2.094675 CATTCTGAACTTCCGCCCATT 58.905 47.619 0.00 0.00 0.00 3.16
2583 2930 1.683011 CCATTCTGAACTTCCGCCCAT 60.683 52.381 0.00 0.00 0.00 4.00
2584 2931 0.322456 CCATTCTGAACTTCCGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
2585 2932 0.035439 TCCATTCTGAACTTCCGCCC 60.035 55.000 0.00 0.00 0.00 6.13
2586 2933 1.740025 CTTCCATTCTGAACTTCCGCC 59.260 52.381 0.00 0.00 0.00 6.13
2587 2934 1.740025 CCTTCCATTCTGAACTTCCGC 59.260 52.381 0.00 0.00 0.00 5.54
2588 2935 1.740025 GCCTTCCATTCTGAACTTCCG 59.260 52.381 0.00 0.00 0.00 4.30
2589 2936 1.740025 CGCCTTCCATTCTGAACTTCC 59.260 52.381 0.00 0.00 0.00 3.46
2590 2937 1.740025 CCGCCTTCCATTCTGAACTTC 59.260 52.381 0.00 0.00 0.00 3.01
2591 2938 1.614317 CCCGCCTTCCATTCTGAACTT 60.614 52.381 0.00 0.00 0.00 2.66
2592 2939 0.035056 CCCGCCTTCCATTCTGAACT 60.035 55.000 0.00 0.00 0.00 3.01
2593 2940 1.657751 GCCCGCCTTCCATTCTGAAC 61.658 60.000 0.00 0.00 0.00 3.18
2594 2941 1.378514 GCCCGCCTTCCATTCTGAA 60.379 57.895 0.00 0.00 0.00 3.02
2595 2942 2.257409 GAGCCCGCCTTCCATTCTGA 62.257 60.000 0.00 0.00 0.00 3.27
2596 2943 1.821332 GAGCCCGCCTTCCATTCTG 60.821 63.158 0.00 0.00 0.00 3.02
2597 2944 2.592308 GAGCCCGCCTTCCATTCT 59.408 61.111 0.00 0.00 0.00 2.40
2598 2945 2.517166 GGAGCCCGCCTTCCATTC 60.517 66.667 0.00 0.00 0.00 2.67
2599 2946 2.439553 TTTGGAGCCCGCCTTCCATT 62.440 55.000 0.00 0.00 31.71 3.16
2600 2947 2.439553 TTTTGGAGCCCGCCTTCCAT 62.440 55.000 0.00 0.00 31.71 3.41
2601 2948 3.140073 TTTTGGAGCCCGCCTTCCA 62.140 57.895 0.00 0.00 0.00 3.53
2602 2949 2.282887 TTTTGGAGCCCGCCTTCC 60.283 61.111 0.00 0.00 0.00 3.46
2603 2950 2.994671 GCTTTTGGAGCCCGCCTTC 61.995 63.158 0.00 0.00 46.01 3.46
2604 2951 2.991540 GCTTTTGGAGCCCGCCTT 60.992 61.111 0.00 0.00 46.01 4.35
2612 2959 2.275318 GTGGATCTCGAGCTTTTGGAG 58.725 52.381 7.81 0.00 33.31 3.86
2613 2960 1.404181 CGTGGATCTCGAGCTTTTGGA 60.404 52.381 7.81 0.00 0.00 3.53
2614 2961 1.002366 CGTGGATCTCGAGCTTTTGG 58.998 55.000 7.81 0.00 0.00 3.28
2615 2962 1.996292 TCGTGGATCTCGAGCTTTTG 58.004 50.000 7.81 0.00 33.38 2.44
2616 2963 2.544685 CATCGTGGATCTCGAGCTTTT 58.455 47.619 7.81 0.00 40.57 2.27
2617 2964 1.202463 CCATCGTGGATCTCGAGCTTT 60.202 52.381 7.81 0.00 40.96 3.51
2618 2965 0.387202 CCATCGTGGATCTCGAGCTT 59.613 55.000 7.81 0.00 40.96 3.74
2619 2966 0.753479 ACCATCGTGGATCTCGAGCT 60.753 55.000 7.81 0.00 40.96 4.09
2620 2967 0.103208 AACCATCGTGGATCTCGAGC 59.897 55.000 7.81 0.00 40.96 5.03
2621 2968 2.464865 GAAACCATCGTGGATCTCGAG 58.535 52.381 5.93 5.93 40.96 4.04
2622 2969 1.202256 CGAAACCATCGTGGATCTCGA 60.202 52.381 13.65 13.65 46.52 4.04
2623 2970 1.200483 CGAAACCATCGTGGATCTCG 58.800 55.000 10.46 10.26 46.52 4.04
2633 2980 1.507141 CCGCCATAGCCGAAACCATC 61.507 60.000 0.00 0.00 34.57 3.51
2634 2981 1.525995 CCGCCATAGCCGAAACCAT 60.526 57.895 0.00 0.00 34.57 3.55
2635 2982 2.124901 CCGCCATAGCCGAAACCA 60.125 61.111 0.00 0.00 34.57 3.67
2636 2983 2.900337 CCCGCCATAGCCGAAACC 60.900 66.667 0.00 0.00 34.57 3.27
2637 2984 1.887707 CTCCCGCCATAGCCGAAAC 60.888 63.158 0.00 0.00 34.57 2.78
2638 2985 2.504032 CTCCCGCCATAGCCGAAA 59.496 61.111 0.00 0.00 34.57 3.46
2639 2986 4.235762 GCTCCCGCCATAGCCGAA 62.236 66.667 0.00 0.00 34.57 4.30
2642 2989 4.547367 AACGCTCCCGCCATAGCC 62.547 66.667 0.00 0.00 38.22 3.93
2643 2990 2.513897 AAACGCTCCCGCCATAGC 60.514 61.111 0.00 0.00 38.22 2.97
2644 2991 2.180204 CCAAACGCTCCCGCCATAG 61.180 63.158 0.00 0.00 38.22 2.23
2645 2992 2.124901 CCAAACGCTCCCGCCATA 60.125 61.111 0.00 0.00 38.22 2.74
2649 2996 2.978018 CTTTCCCAAACGCTCCCGC 61.978 63.158 0.00 0.00 38.22 6.13
2650 2997 2.332654 CCTTTCCCAAACGCTCCCG 61.333 63.158 0.00 0.00 41.14 5.14
2651 2998 1.977009 CCCTTTCCCAAACGCTCCC 60.977 63.158 0.00 0.00 0.00 4.30
2652 2999 0.538746 TTCCCTTTCCCAAACGCTCC 60.539 55.000 0.00 0.00 0.00 4.70
2653 3000 0.881796 CTTCCCTTTCCCAAACGCTC 59.118 55.000 0.00 0.00 0.00 5.03
2654 3001 0.539669 CCTTCCCTTTCCCAAACGCT 60.540 55.000 0.00 0.00 0.00 5.07
2655 3002 1.964448 CCTTCCCTTTCCCAAACGC 59.036 57.895 0.00 0.00 0.00 4.84
2656 3003 0.825840 TGCCTTCCCTTTCCCAAACG 60.826 55.000 0.00 0.00 0.00 3.60
2657 3004 0.969149 CTGCCTTCCCTTTCCCAAAC 59.031 55.000 0.00 0.00 0.00 2.93
2658 3005 0.831711 GCTGCCTTCCCTTTCCCAAA 60.832 55.000 0.00 0.00 0.00 3.28
2659 3006 1.228862 GCTGCCTTCCCTTTCCCAA 60.229 57.895 0.00 0.00 0.00 4.12
2660 3007 2.440599 GCTGCCTTCCCTTTCCCA 59.559 61.111 0.00 0.00 0.00 4.37
2661 3008 2.363018 GGCTGCCTTCCCTTTCCC 60.363 66.667 12.43 0.00 0.00 3.97
2662 3009 1.680314 CAGGCTGCCTTCCCTTTCC 60.680 63.158 20.79 0.00 0.00 3.13
2663 3010 1.680314 CCAGGCTGCCTTCCCTTTC 60.680 63.158 20.79 0.00 0.00 2.62
2664 3011 2.442413 CCAGGCTGCCTTCCCTTT 59.558 61.111 20.79 0.00 0.00 3.11
2665 3012 3.665971 CCCAGGCTGCCTTCCCTT 61.666 66.667 20.79 0.00 0.00 3.95
2673 3020 4.684134 TCCAAAGGCCCAGGCTGC 62.684 66.667 9.56 0.00 38.81 5.25
2674 3021 2.118076 TTCCAAAGGCCCAGGCTG 59.882 61.111 7.75 7.75 38.81 4.85
2675 3022 2.118294 GTTCCAAAGGCCCAGGCT 59.882 61.111 8.89 0.00 41.24 4.58
2676 3023 3.373565 CGTTCCAAAGGCCCAGGC 61.374 66.667 0.00 0.00 41.06 4.85
2677 3024 2.676471 CCGTTCCAAAGGCCCAGG 60.676 66.667 0.00 0.00 0.00 4.45
2678 3025 1.971695 GACCGTTCCAAAGGCCCAG 60.972 63.158 0.00 0.00 0.00 4.45
2679 3026 2.114411 GACCGTTCCAAAGGCCCA 59.886 61.111 0.00 0.00 0.00 5.36
2680 3027 2.675423 GGACCGTTCCAAAGGCCC 60.675 66.667 0.00 0.00 42.30 5.80
2688 3035 3.801620 TCCCTTCTGGACCGTTCC 58.198 61.111 0.00 0.00 38.61 3.62
2695 3042 0.719015 AGATCCCTGTCCCTTCTGGA 59.281 55.000 0.00 0.00 42.41 3.86
2696 3043 0.835941 CAGATCCCTGTCCCTTCTGG 59.164 60.000 0.00 0.00 35.70 3.86
2697 3044 0.179936 GCAGATCCCTGTCCCTTCTG 59.820 60.000 0.00 0.00 42.35 3.02
2698 3045 0.252881 TGCAGATCCCTGTCCCTTCT 60.253 55.000 0.00 0.00 42.35 2.85
2699 3046 0.842635 ATGCAGATCCCTGTCCCTTC 59.157 55.000 0.00 0.00 42.35 3.46
2700 3047 0.549950 CATGCAGATCCCTGTCCCTT 59.450 55.000 0.00 0.00 42.35 3.95
2701 3048 0.622738 ACATGCAGATCCCTGTCCCT 60.623 55.000 0.00 0.00 42.35 4.20
2702 3049 0.179034 GACATGCAGATCCCTGTCCC 60.179 60.000 4.81 0.00 42.35 4.46
2703 3050 0.543277 TGACATGCAGATCCCTGTCC 59.457 55.000 12.13 0.00 42.35 4.02
2704 3051 1.661341 GTGACATGCAGATCCCTGTC 58.339 55.000 8.59 8.59 42.35 3.51
2705 3052 0.254178 GGTGACATGCAGATCCCTGT 59.746 55.000 0.00 0.00 42.35 4.00
2706 3053 0.812811 CGGTGACATGCAGATCCCTG 60.813 60.000 0.00 0.00 43.22 4.45
2707 3054 1.267574 ACGGTGACATGCAGATCCCT 61.268 55.000 0.00 0.00 0.00 4.20
2708 3055 1.091771 CACGGTGACATGCAGATCCC 61.092 60.000 0.74 0.00 0.00 3.85
2709 3056 0.391661 ACACGGTGACATGCAGATCC 60.392 55.000 16.29 0.00 0.00 3.36
2710 3057 0.723414 CACACGGTGACATGCAGATC 59.277 55.000 16.29 0.00 35.23 2.75
2711 3058 0.321346 TCACACGGTGACATGCAGAT 59.679 50.000 16.29 0.00 37.67 2.90
2712 3059 1.745264 TCACACGGTGACATGCAGA 59.255 52.632 16.29 0.00 37.67 4.26
2713 3060 4.359475 TCACACGGTGACATGCAG 57.641 55.556 16.29 0.00 37.67 4.41
2720 3067 2.279851 CGGCAAGTCACACGGTGA 60.280 61.111 16.29 0.00 40.50 4.02
2721 3068 3.345808 CCGGCAAGTCACACGGTG 61.346 66.667 6.58 6.58 41.34 4.94
2725 3072 2.010582 TTTTGGCCGGCAAGTCACAC 62.011 55.000 30.85 8.62 0.00 3.82
2726 3073 1.112315 ATTTTGGCCGGCAAGTCACA 61.112 50.000 30.85 13.29 0.00 3.58
2727 3074 0.033366 AATTTTGGCCGGCAAGTCAC 59.967 50.000 30.85 10.31 0.00 3.67
2728 3075 0.316841 GAATTTTGGCCGGCAAGTCA 59.683 50.000 30.85 14.57 0.00 3.41
2729 3076 0.316841 TGAATTTTGGCCGGCAAGTC 59.683 50.000 30.85 22.25 0.00 3.01
2730 3077 0.755686 TTGAATTTTGGCCGGCAAGT 59.244 45.000 30.85 13.86 0.00 3.16
2731 3078 1.876322 TTTGAATTTTGGCCGGCAAG 58.124 45.000 30.85 0.00 0.00 4.01
2732 3079 2.557920 ATTTGAATTTTGGCCGGCAA 57.442 40.000 30.85 16.59 0.00 4.52
2733 3080 2.557920 AATTTGAATTTTGGCCGGCA 57.442 40.000 30.85 12.04 0.00 5.69
2734 3081 5.150683 GTTTAAATTTGAATTTTGGCCGGC 58.849 37.500 21.18 21.18 39.24 6.13
2735 3082 6.305693 TGTTTAAATTTGAATTTTGGCCGG 57.694 33.333 0.00 0.00 39.24 6.13
2776 3123 6.399743 TGTGCTATGAACATGCATGATTTTT 58.600 32.000 32.75 16.45 39.00 1.94
2777 3124 5.968254 TGTGCTATGAACATGCATGATTTT 58.032 33.333 32.75 16.83 39.00 1.82
2778 3125 5.585820 TGTGCTATGAACATGCATGATTT 57.414 34.783 32.75 17.59 39.00 2.17
2779 3126 5.784578 ATGTGCTATGAACATGCATGATT 57.215 34.783 32.75 21.39 36.89 2.57
2780 3127 7.462571 AATATGTGCTATGAACATGCATGAT 57.537 32.000 32.75 22.02 38.67 2.45
2781 3128 6.887626 AATATGTGCTATGAACATGCATGA 57.112 33.333 32.75 11.53 38.67 3.07
2782 3129 9.465985 TTTTAATATGTGCTATGAACATGCATG 57.534 29.630 25.09 25.09 38.67 4.06
2822 3169 9.559958 GTGTATGTTTCGAATTTTGATCTGAAT 57.440 29.630 0.00 0.00 0.00 2.57
2823 3170 8.020819 GGTGTATGTTTCGAATTTTGATCTGAA 58.979 33.333 0.00 0.00 0.00 3.02
2824 3171 7.174080 TGGTGTATGTTTCGAATTTTGATCTGA 59.826 33.333 0.00 0.00 0.00 3.27
2825 3172 7.304735 TGGTGTATGTTTCGAATTTTGATCTG 58.695 34.615 0.00 0.00 0.00 2.90
2826 3173 7.447374 TGGTGTATGTTTCGAATTTTGATCT 57.553 32.000 0.00 0.00 0.00 2.75
2827 3174 8.020819 TCTTGGTGTATGTTTCGAATTTTGATC 58.979 33.333 0.00 0.00 0.00 2.92
2828 3175 7.881142 TCTTGGTGTATGTTTCGAATTTTGAT 58.119 30.769 0.00 0.00 0.00 2.57
2829 3176 7.265647 TCTTGGTGTATGTTTCGAATTTTGA 57.734 32.000 0.00 0.00 0.00 2.69
2830 3177 7.358352 GCTTCTTGGTGTATGTTTCGAATTTTG 60.358 37.037 0.00 0.00 0.00 2.44
2831 3178 6.640907 GCTTCTTGGTGTATGTTTCGAATTTT 59.359 34.615 0.00 0.00 0.00 1.82
2832 3179 6.149633 GCTTCTTGGTGTATGTTTCGAATTT 58.850 36.000 0.00 0.00 0.00 1.82
2833 3180 5.240623 TGCTTCTTGGTGTATGTTTCGAATT 59.759 36.000 0.00 0.00 0.00 2.17
2834 3181 4.759693 TGCTTCTTGGTGTATGTTTCGAAT 59.240 37.500 0.00 0.00 0.00 3.34
2835 3182 4.130857 TGCTTCTTGGTGTATGTTTCGAA 58.869 39.130 0.00 0.00 0.00 3.71
2836 3183 3.734463 TGCTTCTTGGTGTATGTTTCGA 58.266 40.909 0.00 0.00 0.00 3.71
2837 3184 4.481930 TTGCTTCTTGGTGTATGTTTCG 57.518 40.909 0.00 0.00 0.00 3.46
2875 3222 9.599866 CAAATGGTTCTCTGTATACTATTCACA 57.400 33.333 4.17 0.00 0.00 3.58
2876 3223 8.552034 GCAAATGGTTCTCTGTATACTATTCAC 58.448 37.037 4.17 0.00 0.00 3.18
2877 3224 8.264347 TGCAAATGGTTCTCTGTATACTATTCA 58.736 33.333 4.17 0.00 0.00 2.57
2878 3225 8.662781 TGCAAATGGTTCTCTGTATACTATTC 57.337 34.615 4.17 0.00 0.00 1.75
2879 3226 9.632638 ATTGCAAATGGTTCTCTGTATACTATT 57.367 29.630 1.71 0.00 0.00 1.73
2880 3227 9.632638 AATTGCAAATGGTTCTCTGTATACTAT 57.367 29.630 1.71 0.00 0.00 2.12
2882 3229 7.944729 AATTGCAAATGGTTCTCTGTATACT 57.055 32.000 1.71 0.00 0.00 2.12
2885 3232 8.970020 TGAATAATTGCAAATGGTTCTCTGTAT 58.030 29.630 1.71 0.00 0.00 2.29
2886 3233 8.347004 TGAATAATTGCAAATGGTTCTCTGTA 57.653 30.769 1.71 0.00 0.00 2.74
2887 3234 7.230849 TGAATAATTGCAAATGGTTCTCTGT 57.769 32.000 1.71 0.00 0.00 3.41
2888 3235 9.806203 TTATGAATAATTGCAAATGGTTCTCTG 57.194 29.630 1.71 0.00 0.00 3.35
2889 3236 9.807649 GTTATGAATAATTGCAAATGGTTCTCT 57.192 29.630 1.71 0.53 0.00 3.10
2890 3237 9.585099 TGTTATGAATAATTGCAAATGGTTCTC 57.415 29.630 1.71 0.00 0.00 2.87
2891 3238 9.590451 CTGTTATGAATAATTGCAAATGGTTCT 57.410 29.630 1.71 0.00 0.00 3.01
2892 3239 9.585099 TCTGTTATGAATAATTGCAAATGGTTC 57.415 29.630 1.71 5.44 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.