Multiple sequence alignment - TraesCS5A01G443000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G443000 chr5A 100.000 7921 0 0 1 7921 623206544 623214464 0.000000e+00 14628.0
1 TraesCS5A01G443000 chr5A 88.352 455 47 3 3177 3627 623207941 623208393 6.990000e-150 542.0
2 TraesCS5A01G443000 chr5A 88.352 455 47 3 1398 1850 623209720 623210170 6.990000e-150 542.0
3 TraesCS5A01G443000 chr5A 88.623 167 17 2 4291 4456 623230120 623230285 1.350000e-47 202.0
4 TraesCS5A01G443000 chr5D 93.573 3252 123 25 1 3178 498768767 498772006 0.000000e+00 4769.0
5 TraesCS5A01G443000 chr5D 96.447 2083 69 5 4124 6203 498773748 498775828 0.000000e+00 3432.0
6 TraesCS5A01G443000 chr5D 89.105 1542 97 32 6199 7700 498775864 498777374 0.000000e+00 1851.0
7 TraesCS5A01G443000 chr5D 91.228 456 31 4 3177 3627 498770226 498770677 5.250000e-171 612.0
8 TraesCS5A01G443000 chr5D 92.417 211 13 3 3835 4042 498773529 498773739 1.670000e-76 298.0
9 TraesCS5A01G443000 chr5B 96.389 2908 82 11 4124 7016 618471622 618474521 0.000000e+00 4767.0
10 TraesCS5A01G443000 chr5B 89.335 1894 117 42 1 1850 618469223 618471075 0.000000e+00 2300.0
11 TraesCS5A01G443000 chr5B 92.518 695 39 10 7019 7710 618474602 618475286 0.000000e+00 983.0
12 TraesCS5A01G443000 chr5B 88.567 656 62 7 3177 3827 618470628 618471275 0.000000e+00 784.0
13 TraesCS5A01G443000 chr2D 93.588 655 40 2 4124 4777 513990014 513990667 0.000000e+00 976.0
14 TraesCS5A01G443000 chr2D 84.045 445 36 22 938 1356 513987768 513988203 5.760000e-106 396.0
15 TraesCS5A01G443000 chr2D 93.506 154 7 3 3891 4042 513989853 513990005 8.000000e-55 226.0
16 TraesCS5A01G443000 chr2D 95.000 80 4 0 3870 3949 513989774 513989853 8.340000e-25 126.0
17 TraesCS5A01G443000 chr7D 95.736 516 19 2 4265 4780 178158530 178158018 0.000000e+00 828.0
18 TraesCS5A01G443000 chr7D 87.634 372 23 14 897 1260 178175968 178175612 2.060000e-110 411.0
19 TraesCS5A01G443000 chr7D 89.573 211 11 9 3834 4042 178171174 178170973 2.840000e-64 257.0
20 TraesCS5A01G443000 chr7D 87.671 146 12 3 4124 4268 178170964 178170824 1.770000e-36 165.0
21 TraesCS5A01G443000 chr2B 74.885 1087 237 28 2108 3178 694608274 694607208 5.600000e-126 462.0
22 TraesCS5A01G443000 chr2B 82.103 447 68 10 2737 3178 694701448 694701009 9.710000e-99 372.0
23 TraesCS5A01G443000 chr2B 88.172 93 7 1 4040 4128 361575300 361575392 3.020000e-19 108.0
24 TraesCS5A01G443000 chr3D 80.128 624 118 5 36 656 600549106 600549726 2.010000e-125 460.0
25 TraesCS5A01G443000 chr3A 78.730 630 125 6 36 656 730323232 730322603 5.720000e-111 412.0
26 TraesCS5A01G443000 chr4A 95.699 93 2 2 4038 4128 736753877 736753969 1.780000e-31 148.0
27 TraesCS5A01G443000 chr4A 93.548 93 5 1 4038 4129 736753970 736753878 3.850000e-28 137.0
28 TraesCS5A01G443000 chr6B 93.103 87 2 1 4040 4126 46785202 46785120 3.000000e-24 124.0
29 TraesCS5A01G443000 chr6B 90.000 90 5 1 4038 4127 46785117 46785202 6.500000e-21 113.0
30 TraesCS5A01G443000 chrUn 84.694 98 13 2 4040 4135 19208461 19208364 6.540000e-16 97.1
31 TraesCS5A01G443000 chr3B 85.417 96 10 2 4038 4129 549443909 549444004 6.540000e-16 97.1
32 TraesCS5A01G443000 chr2A 98.077 52 1 0 4082 4133 49422122 49422071 3.040000e-14 91.6
33 TraesCS5A01G443000 chr7B 90.476 63 2 2 4022 4083 745254697 745254756 6.590000e-11 80.5
34 TraesCS5A01G443000 chr1B 82.222 90 14 1 4040 4129 300580843 300580930 8.520000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G443000 chr5A 623206544 623214464 7920 False 14628.0 14628 100.00000 1 7921 1 chr5A.!!$F1 7920
1 TraesCS5A01G443000 chr5A 623207941 623210170 2229 False 542.0 542 88.35200 1398 3627 2 chr5A.!!$F3 2229
2 TraesCS5A01G443000 chr5D 498768767 498777374 8607 False 2192.4 4769 92.55400 1 7700 5 chr5D.!!$F1 7699
3 TraesCS5A01G443000 chr5B 618469223 618475286 6063 False 2208.5 4767 91.70225 1 7710 4 chr5B.!!$F1 7709
4 TraesCS5A01G443000 chr2D 513987768 513990667 2899 False 431.0 976 91.53475 938 4777 4 chr2D.!!$F1 3839
5 TraesCS5A01G443000 chr7D 178158018 178158530 512 True 828.0 828 95.73600 4265 4780 1 chr7D.!!$R1 515
6 TraesCS5A01G443000 chr2B 694607208 694608274 1066 True 462.0 462 74.88500 2108 3178 1 chr2B.!!$R1 1070
7 TraesCS5A01G443000 chr3D 600549106 600549726 620 False 460.0 460 80.12800 36 656 1 chr3D.!!$F1 620
8 TraesCS5A01G443000 chr3A 730322603 730323232 629 True 412.0 412 78.73000 36 656 1 chr3A.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 789 0.033228 CAGATCTGGGAGCGTGGATC 59.967 60.000 15.38 0.0 35.98 3.36 F
1326 1406 0.234884 GTGGCCGAATTATAGCGTGC 59.765 55.000 0.00 0.0 0.00 5.34 F
3688 5708 1.078143 GTAGGAGGCCTTGGTGCTG 60.078 63.158 6.77 0.0 34.61 4.41 F
4057 6261 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.0 44.66 4.30 F
4059 6263 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.0 44.66 2.17 F
4060 6264 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.0 44.66 1.40 F
4062 6266 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 F
4874 7081 0.770499 TGGGCACATCTTGGTTCTGA 59.230 50.000 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3630 5650 8.863872 AGCAACCATTGAAGTAACTATTAAGT 57.136 30.769 0.00 0.00 37.65 2.24 R
4043 6247 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
6521 8781 1.118965 TGAGGCCGAACTGGTTCAGA 61.119 55.000 12.94 0.00 41.21 3.27 R
6701 8962 2.211250 ACAGCTACTCCGTCAAGGTA 57.789 50.000 0.00 0.00 41.99 3.08 R
6901 9167 2.358957 TGCAACACAGTATCCATCAGC 58.641 47.619 0.00 0.00 0.00 4.26 R
6902 9168 4.005650 ACTTGCAACACAGTATCCATCAG 58.994 43.478 0.00 0.00 0.00 2.90 R
6916 9182 8.539674 CCAAAGAAATTACTTGTAACTTGCAAC 58.460 33.333 0.00 0.00 0.00 4.17 R
7746 10116 0.185901 TGCAGAAAAGCCTCCACCTT 59.814 50.000 0.00 0.00 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.248431 GCAGGCACGTCGTTGAAC 59.752 61.111 0.00 0.00 0.00 3.18
757 789 0.033228 CAGATCTGGGAGCGTGGATC 59.967 60.000 15.38 0.00 35.98 3.36
765 797 2.046892 AGCGTGGATCAGTGTGCC 60.047 61.111 0.00 0.00 0.00 5.01
766 798 2.358615 GCGTGGATCAGTGTGCCA 60.359 61.111 0.00 3.14 0.00 4.92
792 829 3.799755 GCATTCACGCGGGTGGTC 61.800 66.667 29.45 13.87 44.50 4.02
806 845 2.579738 GGTCAAGGCTCGAGGACC 59.420 66.667 18.82 18.82 42.60 4.46
857 896 4.066139 GGATGGGCTGGTGGGCTT 62.066 66.667 0.00 0.00 40.65 4.35
1043 1100 2.826287 CGGAGCTGCGAGGAGAGA 60.826 66.667 24.56 0.00 0.00 3.10
1275 1340 3.934962 GCTCCCGCTCCCTCCATC 61.935 72.222 0.00 0.00 0.00 3.51
1277 1342 4.880426 TCCCGCTCCCTCCATCCC 62.880 72.222 0.00 0.00 0.00 3.85
1282 1347 2.283809 CTCCCTCCATCCCCGTCT 59.716 66.667 0.00 0.00 0.00 4.18
1283 1348 1.834822 CTCCCTCCATCCCCGTCTC 60.835 68.421 0.00 0.00 0.00 3.36
1284 1349 2.844839 CCCTCCATCCCCGTCTCC 60.845 72.222 0.00 0.00 0.00 3.71
1285 1350 3.227276 CCTCCATCCCCGTCTCCG 61.227 72.222 0.00 0.00 0.00 4.63
1326 1406 0.234884 GTGGCCGAATTATAGCGTGC 59.765 55.000 0.00 0.00 0.00 5.34
3670 5690 2.231235 GGTTGCTAGGGATTTGTGGTTG 59.769 50.000 0.00 0.00 0.00 3.77
3681 5701 1.145571 TTGTGGTTGTAGGAGGCCTT 58.854 50.000 6.77 0.00 34.61 4.35
3688 5708 1.078143 GTAGGAGGCCTTGGTGCTG 60.078 63.158 6.77 0.00 34.61 4.41
3699 5719 3.333804 CCTTGGTGCTGTTTTTGTGTTT 58.666 40.909 0.00 0.00 0.00 2.83
3706 5726 5.393243 GGTGCTGTTTTTGTGTTTGTAGGTA 60.393 40.000 0.00 0.00 0.00 3.08
3717 5737 4.760204 GTGTTTGTAGGTAATGAGCCTGTT 59.240 41.667 0.00 0.00 37.54 3.16
3740 5760 1.687660 GGCACCGGAAAGGGTTAAAAA 59.312 47.619 9.46 0.00 46.96 1.94
3744 5764 4.817464 GCACCGGAAAGGGTTAAAAATTTT 59.183 37.500 9.46 0.00 46.96 1.82
3759 5779 8.552865 GTTAAAAATTTTAGCCAACAAACCGAT 58.447 29.630 3.34 0.00 0.00 4.18
3883 6028 4.711846 TGAGATCACCAGCTAACTGTACAT 59.288 41.667 0.00 0.00 42.81 2.29
3889 6034 6.395629 TCACCAGCTAACTGTACATAAAGTC 58.604 40.000 0.00 0.00 42.81 3.01
4050 6254 8.904099 ATAATTTCTTTGTAATACTCCCTCCG 57.096 34.615 0.00 0.00 0.00 4.63
4051 6255 5.750352 TTTCTTTGTAATACTCCCTCCGT 57.250 39.130 0.00 0.00 0.00 4.69
4052 6256 4.996788 TCTTTGTAATACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
4053 6257 3.703052 TCTTTGTAATACTCCCTCCGTCC 59.297 47.826 0.00 0.00 0.00 4.79
4054 6258 1.683943 TGTAATACTCCCTCCGTCCG 58.316 55.000 0.00 0.00 0.00 4.79
4055 6259 0.957362 GTAATACTCCCTCCGTCCGG 59.043 60.000 0.00 0.00 0.00 5.14
4056 6260 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
4057 6261 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
4058 6262 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4059 6263 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4060 6264 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4061 6265 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4062 6266 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4063 6267 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4064 6268 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4065 6269 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4066 6270 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4067 6271 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4068 6272 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
4069 6273 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
4070 6274 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
4071 6275 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
4072 6276 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
4073 6277 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
4074 6278 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
4075 6279 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
4076 6280 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
4077 6281 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
4078 6282 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
4079 6283 6.990349 GGAAATACTTGTCGGAGAAATGGATA 59.010 38.462 0.00 0.00 39.69 2.59
4080 6284 7.661847 GGAAATACTTGTCGGAGAAATGGATAT 59.338 37.037 0.00 0.00 39.69 1.63
4081 6285 9.706691 GAAATACTTGTCGGAGAAATGGATATA 57.293 33.333 0.00 0.00 39.69 0.86
4085 6289 8.980481 ACTTGTCGGAGAAATGGATATATTTT 57.020 30.769 0.00 0.00 39.69 1.82
4086 6290 9.408648 ACTTGTCGGAGAAATGGATATATTTTT 57.591 29.630 0.00 0.00 39.69 1.94
4105 6309 7.703058 ATTTTTATCCATTTCTCCGACAAGT 57.297 32.000 0.00 0.00 0.00 3.16
4106 6310 8.801882 ATTTTTATCCATTTCTCCGACAAGTA 57.198 30.769 0.00 0.00 0.00 2.24
4107 6311 8.801882 TTTTTATCCATTTCTCCGACAAGTAT 57.198 30.769 0.00 0.00 0.00 2.12
4108 6312 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
4109 6313 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
4110 6314 6.927294 ATCCATTTCTCCGACAAGTATTTC 57.073 37.500 0.00 0.00 0.00 2.17
4111 6315 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
4112 6316 4.941263 CCATTTCTCCGACAAGTATTTCCA 59.059 41.667 0.00 0.00 0.00 3.53
4113 6317 5.065218 CCATTTCTCCGACAAGTATTTCCAG 59.935 44.000 0.00 0.00 0.00 3.86
4114 6318 5.477607 TTTCTCCGACAAGTATTTCCAGA 57.522 39.130 0.00 0.00 0.00 3.86
4115 6319 4.451629 TCTCCGACAAGTATTTCCAGAC 57.548 45.455 0.00 0.00 0.00 3.51
4116 6320 3.119602 TCTCCGACAAGTATTTCCAGACG 60.120 47.826 0.00 0.00 0.00 4.18
4117 6321 2.094390 TCCGACAAGTATTTCCAGACGG 60.094 50.000 0.00 0.00 39.30 4.79
4118 6322 2.094390 CCGACAAGTATTTCCAGACGGA 60.094 50.000 0.00 0.00 40.16 4.69
4119 6323 3.179830 CGACAAGTATTTCCAGACGGAG 58.820 50.000 0.00 0.00 44.10 4.63
4120 6324 3.522553 GACAAGTATTTCCAGACGGAGG 58.477 50.000 0.00 0.00 44.10 4.30
4121 6325 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
4122 6326 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
4137 6341 5.742063 ACGGAGGGAGTATTTCCTTAAAAG 58.258 41.667 0.00 0.00 45.98 2.27
4205 6411 4.023980 TCTATCTTTGGAAAGGAGCGAGA 58.976 43.478 0.00 0.00 34.53 4.04
4224 6431 7.969314 AGCGAGAATTTTCAGTTATTCTTCTC 58.031 34.615 0.00 0.00 40.29 2.87
4225 6432 7.821846 AGCGAGAATTTTCAGTTATTCTTCTCT 59.178 33.333 0.00 0.00 40.29 3.10
4247 6454 4.713553 TGATTTCTGTGTGTTTGAGCCTA 58.286 39.130 0.00 0.00 0.00 3.93
4657 6864 6.017934 CGAATCACCTGTCAAGAGAAAAGAAA 60.018 38.462 0.00 0.00 0.00 2.52
4818 7025 3.065510 CGTAGCAGCACTATGTGACTACT 59.934 47.826 16.26 9.94 35.68 2.57
4874 7081 0.770499 TGGGCACATCTTGGTTCTGA 59.230 50.000 0.00 0.00 0.00 3.27
4927 7134 5.994250 TGCTAAATGAATAGAGCAAGAGGT 58.006 37.500 0.00 0.00 41.78 3.85
5134 7342 2.365617 CGGCTGGTGACATTAGGATAGT 59.634 50.000 0.00 0.00 41.51 2.12
5174 7382 9.573133 CTTTGTGTTTGTCTTGAACTCTTATTT 57.427 29.630 0.00 0.00 0.00 1.40
5317 7527 4.206375 CCCTGCAATGTATGTATTGGTCA 58.794 43.478 0.00 0.00 38.25 4.02
5320 7530 6.210796 CCTGCAATGTATGTATTGGTCAATG 58.789 40.000 6.46 0.00 38.25 2.82
5423 7633 2.576191 AGTATTCTACCTTGCAGGGCAA 59.424 45.455 16.02 5.85 46.80 4.52
5624 7834 3.314693 TGTTGGAGTCTAAGGAACACCT 58.685 45.455 0.00 0.00 35.26 4.00
5626 7836 2.257207 TGGAGTCTAAGGAACACCTGG 58.743 52.381 0.00 0.00 33.88 4.45
5790 8000 6.008331 TGACCAGTAAGAAGCACTAGACTTA 58.992 40.000 0.00 0.00 0.00 2.24
5811 8021 9.495754 GACTTATCTTACGACGTTTATTGTACT 57.504 33.333 5.50 0.00 0.00 2.73
5894 8105 2.756760 TCCTTTACCACAGCTACCTACG 59.243 50.000 0.00 0.00 0.00 3.51
6085 8296 4.323868 GCTGAGGTATGTTTTCCCTTCTCT 60.324 45.833 0.00 0.00 0.00 3.10
6142 8353 5.047092 ACTCAAATTATTGTTCCCAGCTTGG 60.047 40.000 0.00 0.00 37.79 3.61
6222 8473 9.075678 CCCATTTATAGAATGAGAGAAGCATTT 57.924 33.333 0.56 0.00 36.19 2.32
6246 8497 4.469945 TCTCGGTTCATCAAAACCTCCTAT 59.530 41.667 4.46 0.00 45.45 2.57
6250 8501 5.163754 CGGTTCATCAAAACCTCCTATCAAC 60.164 44.000 4.46 0.00 45.45 3.18
6354 8605 1.399714 CAGCAATCACCCTGCATGAT 58.600 50.000 0.00 0.00 42.48 2.45
6456 8707 1.374947 GGTGTTCTACAGCAGGCCA 59.625 57.895 5.01 0.00 45.26 5.36
6644 8904 7.600375 CGCCTTGTGATATGTAGATAGATGTTT 59.400 37.037 0.00 0.00 0.00 2.83
6705 8966 9.811995 GTTGTTCTTTACCATTTTTCTTTACCT 57.188 29.630 0.00 0.00 0.00 3.08
6755 9017 6.371809 TTGTAATCCTGTGTTGAGTTGTTC 57.628 37.500 0.00 0.00 0.00 3.18
6881 9147 9.720769 CGGAAATTTGGTTATATATGGAGTAGT 57.279 33.333 0.00 0.00 0.00 2.73
6901 9167 8.410673 AGTAGTGTATGGAGTACTGATATTGG 57.589 38.462 0.00 0.00 31.96 3.16
6902 9168 6.102897 AGTGTATGGAGTACTGATATTGGC 57.897 41.667 0.00 0.00 34.27 4.52
6916 9182 5.554070 TGATATTGGCTGATGGATACTGTG 58.446 41.667 0.00 0.00 37.61 3.66
6950 9216 7.539034 ACAAGTAATTTCTTTGGCCTTGTAT 57.461 32.000 3.32 0.00 31.85 2.29
6993 9260 5.412640 TGGCTGATGTCTTTTTAATGCATG 58.587 37.500 0.00 0.00 0.00 4.06
7016 9283 9.722056 CATGACCTTGCATTTAAATAACTACTC 57.278 33.333 0.00 0.00 0.00 2.59
7017 9284 9.686683 ATGACCTTGCATTTAAATAACTACTCT 57.313 29.630 0.00 0.00 0.00 3.24
7073 9419 1.603802 CATTACATAAGGCACAGGGCG 59.396 52.381 0.00 0.00 46.16 6.13
7075 9421 0.978667 TACATAAGGCACAGGGCGGA 60.979 55.000 0.00 0.00 46.16 5.54
7094 9440 4.186926 CGGATACATCTGGCATATGGAAG 58.813 47.826 16.10 1.95 0.00 3.46
7104 9450 2.648059 GCATATGGAAGCTGGACTGTT 58.352 47.619 4.56 0.00 0.00 3.16
7105 9451 3.019564 GCATATGGAAGCTGGACTGTTT 58.980 45.455 4.56 0.00 0.00 2.83
7106 9452 4.199310 GCATATGGAAGCTGGACTGTTTA 58.801 43.478 4.56 0.00 0.00 2.01
7114 9460 6.385759 TGGAAGCTGGACTGTTTATTATCCTA 59.614 38.462 0.00 0.00 32.06 2.94
7275 9632 1.227674 GCCTCCATACCCTGCTTCG 60.228 63.158 0.00 0.00 0.00 3.79
7307 9664 1.494721 TCAGTTTCCAGGAGCACCTTT 59.505 47.619 0.00 0.00 45.36 3.11
7318 9675 1.912763 GCACCTTTGCCCATTCCCA 60.913 57.895 0.00 0.00 43.66 4.37
7321 9678 0.835971 ACCTTTGCCCATTCCCAACC 60.836 55.000 0.00 0.00 0.00 3.77
7356 9713 4.704833 GCTTCACCCGCAGCCTGA 62.705 66.667 0.00 0.00 0.00 3.86
7361 9718 2.032681 ACCCGCAGCCTGAAACTC 59.967 61.111 0.00 0.00 0.00 3.01
7386 9743 0.832135 TCCAGGAACTCCGCTGTCTT 60.832 55.000 0.00 0.00 42.08 3.01
7511 9872 6.995091 ACTATAATGCAAATTCTGTCCTCCTC 59.005 38.462 0.00 0.00 0.00 3.71
7512 9873 2.496899 TGCAAATTCTGTCCTCCTCC 57.503 50.000 0.00 0.00 0.00 4.30
7513 9874 1.988107 TGCAAATTCTGTCCTCCTCCT 59.012 47.619 0.00 0.00 0.00 3.69
7547 9916 2.561187 TCCTTCCATTCCATCAGACCA 58.439 47.619 0.00 0.00 0.00 4.02
7548 9917 3.125656 TCCTTCCATTCCATCAGACCAT 58.874 45.455 0.00 0.00 0.00 3.55
7549 9918 3.137176 TCCTTCCATTCCATCAGACCATC 59.863 47.826 0.00 0.00 0.00 3.51
7550 9919 2.916702 TCCATTCCATCAGACCATCG 57.083 50.000 0.00 0.00 0.00 3.84
7551 9920 1.202687 TCCATTCCATCAGACCATCGC 60.203 52.381 0.00 0.00 0.00 4.58
7552 9921 1.233019 CATTCCATCAGACCATCGCC 58.767 55.000 0.00 0.00 0.00 5.54
7553 9922 1.135094 ATTCCATCAGACCATCGCCT 58.865 50.000 0.00 0.00 0.00 5.52
7554 9923 0.465705 TTCCATCAGACCATCGCCTC 59.534 55.000 0.00 0.00 0.00 4.70
7638 10007 5.129634 TCCACACTTGCTTCACTAATTTGA 58.870 37.500 0.00 0.00 0.00 2.69
7659 10029 1.000274 ACTTGAAAAACAGATGCCCGC 60.000 47.619 0.00 0.00 0.00 6.13
7660 10030 0.039617 TTGAAAAACAGATGCCCGCG 60.040 50.000 0.00 0.00 0.00 6.46
7682 10052 2.095718 GTCTTCGAAATCCCTGTTGCAC 60.096 50.000 0.00 0.00 0.00 4.57
7700 10070 2.545742 GCACAGGAAACATGTTGGGTTC 60.546 50.000 12.82 5.63 0.00 3.62
7710 10080 5.393068 ACATGTTGGGTTCATATCCATCT 57.607 39.130 0.00 0.00 32.48 2.90
7711 10081 5.769835 ACATGTTGGGTTCATATCCATCTT 58.230 37.500 0.00 0.00 32.48 2.40
7712 10082 6.197168 ACATGTTGGGTTCATATCCATCTTT 58.803 36.000 0.00 0.00 32.48 2.52
7713 10083 6.097270 ACATGTTGGGTTCATATCCATCTTTG 59.903 38.462 0.00 0.00 32.48 2.77
7714 10084 5.579047 TGTTGGGTTCATATCCATCTTTGT 58.421 37.500 0.00 0.00 32.48 2.83
7715 10085 6.015918 TGTTGGGTTCATATCCATCTTTGTT 58.984 36.000 0.00 0.00 32.48 2.83
7716 10086 6.496565 TGTTGGGTTCATATCCATCTTTGTTT 59.503 34.615 0.00 0.00 32.48 2.83
7717 10087 6.528537 TGGGTTCATATCCATCTTTGTTTG 57.471 37.500 0.00 0.00 0.00 2.93
7718 10088 5.421693 TGGGTTCATATCCATCTTTGTTTGG 59.578 40.000 0.00 0.00 0.00 3.28
7719 10089 5.656416 GGGTTCATATCCATCTTTGTTTGGA 59.344 40.000 0.00 0.00 45.69 3.53
7720 10090 6.154363 GGGTTCATATCCATCTTTGTTTGGAA 59.846 38.462 0.00 0.00 44.83 3.53
7721 10091 7.035612 GGTTCATATCCATCTTTGTTTGGAAC 58.964 38.462 0.00 0.00 44.83 3.62
7722 10092 7.309744 GGTTCATATCCATCTTTGTTTGGAACA 60.310 37.037 0.00 0.00 44.83 3.18
7723 10093 7.395190 TCATATCCATCTTTGTTTGGAACAG 57.605 36.000 0.00 0.00 44.83 3.16
7724 10094 6.947733 TCATATCCATCTTTGTTTGGAACAGT 59.052 34.615 0.00 0.00 44.83 3.55
7725 10095 7.451255 TCATATCCATCTTTGTTTGGAACAGTT 59.549 33.333 0.00 0.00 44.83 3.16
7726 10096 8.739039 CATATCCATCTTTGTTTGGAACAGTTA 58.261 33.333 0.00 0.00 44.83 2.24
7727 10097 7.595819 ATCCATCTTTGTTTGGAACAGTTAA 57.404 32.000 0.00 0.00 44.83 2.01
7728 10098 6.801575 TCCATCTTTGTTTGGAACAGTTAAC 58.198 36.000 0.00 0.00 43.27 2.01
7729 10099 6.605594 TCCATCTTTGTTTGGAACAGTTAACT 59.394 34.615 1.12 1.12 43.27 2.24
7730 10100 7.123547 TCCATCTTTGTTTGGAACAGTTAACTT 59.876 33.333 5.07 0.00 43.27 2.66
7731 10101 7.763985 CCATCTTTGTTTGGAACAGTTAACTTT 59.236 33.333 5.07 4.17 43.27 2.66
7732 10102 8.807581 CATCTTTGTTTGGAACAGTTAACTTTC 58.192 33.333 5.07 12.46 43.27 2.62
7733 10103 7.317390 TCTTTGTTTGGAACAGTTAACTTTCC 58.683 34.615 26.34 26.34 43.27 3.13
7734 10104 6.591750 TTGTTTGGAACAGTTAACTTTCCA 57.408 33.333 29.10 29.10 45.69 3.53
7740 10110 6.833041 TGGAACAGTTAACTTTCCAGATACA 58.167 36.000 29.10 16.74 43.13 2.29
7741 10111 7.458397 TGGAACAGTTAACTTTCCAGATACAT 58.542 34.615 29.10 3.38 43.13 2.29
7742 10112 7.390440 TGGAACAGTTAACTTTCCAGATACATG 59.610 37.037 29.10 12.10 43.13 3.21
7743 10113 7.148239 GGAACAGTTAACTTTCCAGATACATGG 60.148 40.741 27.22 9.96 38.98 3.66
7744 10114 5.648092 ACAGTTAACTTTCCAGATACATGGC 59.352 40.000 5.07 0.00 40.41 4.40
7745 10115 5.066505 CAGTTAACTTTCCAGATACATGGCC 59.933 44.000 5.07 0.00 40.41 5.36
7746 10116 3.737559 AACTTTCCAGATACATGGCCA 57.262 42.857 8.56 8.56 40.41 5.36
7747 10117 3.737559 ACTTTCCAGATACATGGCCAA 57.262 42.857 10.96 0.00 40.41 4.52
7748 10118 3.624777 ACTTTCCAGATACATGGCCAAG 58.375 45.455 10.96 8.43 40.41 3.61
7749 10119 2.734755 TTCCAGATACATGGCCAAGG 57.265 50.000 10.96 8.08 40.41 3.61
7750 10120 1.595311 TCCAGATACATGGCCAAGGT 58.405 50.000 10.96 14.56 40.41 3.50
7751 10121 1.212688 TCCAGATACATGGCCAAGGTG 59.787 52.381 20.36 12.82 40.41 4.00
7752 10122 1.683943 CAGATACATGGCCAAGGTGG 58.316 55.000 20.36 6.88 41.55 4.61
7753 10123 1.212688 CAGATACATGGCCAAGGTGGA 59.787 52.381 20.36 7.91 40.96 4.02
7754 10124 1.492176 AGATACATGGCCAAGGTGGAG 59.508 52.381 20.36 4.00 40.96 3.86
7755 10125 0.552848 ATACATGGCCAAGGTGGAGG 59.447 55.000 20.36 0.00 40.96 4.30
7762 10132 3.753787 CCAAGGTGGAGGCTTTTCT 57.246 52.632 0.00 0.00 40.96 2.52
7763 10133 1.251251 CCAAGGTGGAGGCTTTTCTG 58.749 55.000 0.00 0.00 40.96 3.02
7764 10134 0.600057 CAAGGTGGAGGCTTTTCTGC 59.400 55.000 0.00 0.00 0.00 4.26
7765 10135 0.185901 AAGGTGGAGGCTTTTCTGCA 59.814 50.000 0.00 0.00 32.71 4.41
7766 10136 0.185901 AGGTGGAGGCTTTTCTGCAA 59.814 50.000 0.00 0.00 36.87 4.08
7767 10137 0.315251 GGTGGAGGCTTTTCTGCAAC 59.685 55.000 0.00 0.00 36.87 4.17
7768 10138 1.032014 GTGGAGGCTTTTCTGCAACA 58.968 50.000 0.00 0.00 36.87 3.33
7769 10139 1.032014 TGGAGGCTTTTCTGCAACAC 58.968 50.000 0.00 0.00 32.21 3.32
7770 10140 1.322442 GGAGGCTTTTCTGCAACACT 58.678 50.000 0.00 0.00 34.04 3.55
7771 10141 2.158682 TGGAGGCTTTTCTGCAACACTA 60.159 45.455 0.00 0.00 32.21 2.74
7772 10142 2.485814 GGAGGCTTTTCTGCAACACTAG 59.514 50.000 0.00 0.00 34.04 2.57
7773 10143 3.403038 GAGGCTTTTCTGCAACACTAGA 58.597 45.455 0.00 0.00 34.04 2.43
7774 10144 3.406764 AGGCTTTTCTGCAACACTAGAG 58.593 45.455 0.00 0.00 34.04 2.43
7775 10145 2.095516 GGCTTTTCTGCAACACTAGAGC 60.096 50.000 0.00 0.00 34.04 4.09
7776 10146 2.810852 GCTTTTCTGCAACACTAGAGCT 59.189 45.455 0.00 0.00 0.00 4.09
7777 10147 3.997021 GCTTTTCTGCAACACTAGAGCTA 59.003 43.478 0.00 0.00 0.00 3.32
7778 10148 4.092675 GCTTTTCTGCAACACTAGAGCTAG 59.907 45.833 0.00 3.06 39.04 3.42
7779 10149 5.468540 TTTTCTGCAACACTAGAGCTAGA 57.531 39.130 11.28 0.00 36.97 2.43
7780 10150 4.710423 TTCTGCAACACTAGAGCTAGAG 57.290 45.455 11.28 6.03 36.97 2.43
7781 10151 3.020274 TCTGCAACACTAGAGCTAGAGG 58.980 50.000 11.28 5.68 36.97 3.69
7782 10152 2.100584 CTGCAACACTAGAGCTAGAGGG 59.899 54.545 11.28 0.00 36.97 4.30
7783 10153 1.410882 GCAACACTAGAGCTAGAGGGG 59.589 57.143 11.28 2.16 36.97 4.79
7784 10154 1.410882 CAACACTAGAGCTAGAGGGGC 59.589 57.143 11.28 0.00 36.97 5.80
7785 10155 0.930726 ACACTAGAGCTAGAGGGGCT 59.069 55.000 11.28 0.00 43.26 5.19
7797 10167 2.822399 GGGGCTCCCAGTATCACG 59.178 66.667 7.34 0.00 44.65 4.35
7798 10168 1.760875 GGGGCTCCCAGTATCACGA 60.761 63.158 7.34 0.00 44.65 4.35
7799 10169 1.122019 GGGGCTCCCAGTATCACGAT 61.122 60.000 7.34 0.00 44.65 3.73
7800 10170 0.759346 GGGCTCCCAGTATCACGATT 59.241 55.000 0.00 0.00 35.81 3.34
7801 10171 1.968493 GGGCTCCCAGTATCACGATTA 59.032 52.381 0.00 0.00 35.81 1.75
7802 10172 2.367567 GGGCTCCCAGTATCACGATTAA 59.632 50.000 0.00 0.00 35.81 1.40
7803 10173 3.555168 GGGCTCCCAGTATCACGATTAAG 60.555 52.174 0.00 0.00 35.81 1.85
7804 10174 3.555168 GGCTCCCAGTATCACGATTAAGG 60.555 52.174 0.00 0.00 0.00 2.69
7805 10175 3.069729 GCTCCCAGTATCACGATTAAGGT 59.930 47.826 0.00 0.00 0.00 3.50
7806 10176 4.443034 GCTCCCAGTATCACGATTAAGGTT 60.443 45.833 0.00 0.00 0.00 3.50
7807 10177 5.671493 CTCCCAGTATCACGATTAAGGTTT 58.329 41.667 0.00 0.00 0.00 3.27
7808 10178 6.684613 GCTCCCAGTATCACGATTAAGGTTTA 60.685 42.308 0.00 0.00 0.00 2.01
7809 10179 7.369551 TCCCAGTATCACGATTAAGGTTTAT 57.630 36.000 0.00 0.00 0.00 1.40
7810 10180 7.439381 TCCCAGTATCACGATTAAGGTTTATC 58.561 38.462 0.00 0.00 0.00 1.75
7811 10181 7.289317 TCCCAGTATCACGATTAAGGTTTATCT 59.711 37.037 0.00 0.00 0.00 1.98
7812 10182 7.931948 CCCAGTATCACGATTAAGGTTTATCTT 59.068 37.037 0.00 0.00 0.00 2.40
7813 10183 8.979574 CCAGTATCACGATTAAGGTTTATCTTC 58.020 37.037 0.00 0.00 0.00 2.87
7814 10184 9.529325 CAGTATCACGATTAAGGTTTATCTTCA 57.471 33.333 0.00 0.00 0.00 3.02
7827 10197 8.268878 AGGTTTATCTTCATTATAGAGCCTGT 57.731 34.615 0.00 0.00 0.00 4.00
7828 10198 9.381038 AGGTTTATCTTCATTATAGAGCCTGTA 57.619 33.333 0.00 0.00 0.00 2.74
7829 10199 9.998106 GGTTTATCTTCATTATAGAGCCTGTAA 57.002 33.333 0.00 0.00 0.00 2.41
7831 10201 9.712305 TTTATCTTCATTATAGAGCCTGTAAGC 57.288 33.333 0.00 0.00 0.00 3.09
7832 10202 6.731292 TCTTCATTATAGAGCCTGTAAGCA 57.269 37.500 0.00 0.00 34.23 3.91
7833 10203 6.753180 TCTTCATTATAGAGCCTGTAAGCAG 58.247 40.000 0.00 0.00 42.22 4.24
7834 10204 6.551227 TCTTCATTATAGAGCCTGTAAGCAGA 59.449 38.462 0.00 0.00 45.28 4.26
7835 10205 6.924913 TCATTATAGAGCCTGTAAGCAGAT 57.075 37.500 0.00 0.00 45.28 2.90
7836 10206 7.308450 TCATTATAGAGCCTGTAAGCAGATT 57.692 36.000 0.00 0.00 45.28 2.40
7837 10207 7.739825 TCATTATAGAGCCTGTAAGCAGATTT 58.260 34.615 0.00 0.00 45.28 2.17
7838 10208 7.875041 TCATTATAGAGCCTGTAAGCAGATTTC 59.125 37.037 0.00 0.00 45.28 2.17
7839 10209 3.988976 AGAGCCTGTAAGCAGATTTCA 57.011 42.857 0.00 0.00 45.28 2.69
7840 10210 3.604582 AGAGCCTGTAAGCAGATTTCAC 58.395 45.455 0.00 0.00 45.28 3.18
7841 10211 2.680339 GAGCCTGTAAGCAGATTTCACC 59.320 50.000 0.00 0.00 45.28 4.02
7842 10212 1.398390 GCCTGTAAGCAGATTTCACCG 59.602 52.381 0.00 0.00 45.28 4.94
7843 10213 2.935238 GCCTGTAAGCAGATTTCACCGA 60.935 50.000 0.00 0.00 45.28 4.69
7844 10214 2.932614 CCTGTAAGCAGATTTCACCGAG 59.067 50.000 0.00 0.00 45.28 4.63
7845 10215 3.368427 CCTGTAAGCAGATTTCACCGAGA 60.368 47.826 0.00 0.00 45.28 4.04
7846 10216 4.245660 CTGTAAGCAGATTTCACCGAGAA 58.754 43.478 0.00 0.00 45.28 2.87
7847 10217 4.832248 TGTAAGCAGATTTCACCGAGAAT 58.168 39.130 0.00 0.00 35.83 2.40
7848 10218 5.972935 TGTAAGCAGATTTCACCGAGAATA 58.027 37.500 0.00 0.00 35.83 1.75
7849 10219 6.582636 TGTAAGCAGATTTCACCGAGAATAT 58.417 36.000 0.00 0.00 35.83 1.28
7850 10220 7.722363 TGTAAGCAGATTTCACCGAGAATATA 58.278 34.615 0.00 0.00 35.83 0.86
7851 10221 8.367911 TGTAAGCAGATTTCACCGAGAATATAT 58.632 33.333 0.00 0.00 35.83 0.86
7852 10222 9.209175 GTAAGCAGATTTCACCGAGAATATATT 57.791 33.333 0.00 0.00 35.83 1.28
7853 10223 7.664082 AGCAGATTTCACCGAGAATATATTG 57.336 36.000 1.78 0.00 35.83 1.90
7854 10224 6.148480 AGCAGATTTCACCGAGAATATATTGC 59.852 38.462 1.78 0.00 35.83 3.56
7855 10225 6.621596 GCAGATTTCACCGAGAATATATTGCC 60.622 42.308 1.78 0.00 35.83 4.52
7856 10226 5.940470 AGATTTCACCGAGAATATATTGCCC 59.060 40.000 1.78 0.00 35.83 5.36
7857 10227 3.695830 TCACCGAGAATATATTGCCCC 57.304 47.619 1.78 0.00 0.00 5.80
7858 10228 2.304761 TCACCGAGAATATATTGCCCCC 59.695 50.000 1.78 0.00 0.00 5.40
7859 10229 2.039746 CACCGAGAATATATTGCCCCCA 59.960 50.000 1.78 0.00 0.00 4.96
7860 10230 2.919602 ACCGAGAATATATTGCCCCCAT 59.080 45.455 1.78 0.00 0.00 4.00
7861 10231 3.333680 ACCGAGAATATATTGCCCCCATT 59.666 43.478 1.78 0.00 0.00 3.16
7862 10232 4.202673 ACCGAGAATATATTGCCCCCATTT 60.203 41.667 1.78 0.00 0.00 2.32
7863 10233 4.158394 CCGAGAATATATTGCCCCCATTTG 59.842 45.833 1.78 0.00 0.00 2.32
7864 10234 4.766891 CGAGAATATATTGCCCCCATTTGT 59.233 41.667 1.78 0.00 0.00 2.83
7865 10235 5.106157 CGAGAATATATTGCCCCCATTTGTC 60.106 44.000 1.78 0.00 0.00 3.18
7866 10236 5.714863 AGAATATATTGCCCCCATTTGTCA 58.285 37.500 1.78 0.00 0.00 3.58
7867 10237 6.325352 AGAATATATTGCCCCCATTTGTCAT 58.675 36.000 1.78 0.00 0.00 3.06
7868 10238 7.477864 AGAATATATTGCCCCCATTTGTCATA 58.522 34.615 1.78 0.00 0.00 2.15
7869 10239 7.616935 AGAATATATTGCCCCCATTTGTCATAG 59.383 37.037 1.78 0.00 0.00 2.23
7870 10240 2.917713 TTGCCCCCATTTGTCATAGT 57.082 45.000 0.00 0.00 0.00 2.12
7871 10241 2.142356 TGCCCCCATTTGTCATAGTG 57.858 50.000 0.00 0.00 0.00 2.74
7872 10242 0.746659 GCCCCCATTTGTCATAGTGC 59.253 55.000 0.00 0.00 0.00 4.40
7873 10243 1.686115 GCCCCCATTTGTCATAGTGCT 60.686 52.381 0.00 0.00 0.00 4.40
7874 10244 2.026641 CCCCCATTTGTCATAGTGCTG 58.973 52.381 0.00 0.00 0.00 4.41
7875 10245 2.357050 CCCCCATTTGTCATAGTGCTGA 60.357 50.000 0.00 0.00 0.00 4.26
7876 10246 2.947652 CCCCATTTGTCATAGTGCTGAG 59.052 50.000 0.00 0.00 0.00 3.35
7877 10247 2.357009 CCCATTTGTCATAGTGCTGAGC 59.643 50.000 0.00 0.00 0.00 4.26
7878 10248 3.011818 CCATTTGTCATAGTGCTGAGCA 58.988 45.455 1.40 1.40 35.60 4.26
7879 10249 3.441222 CCATTTGTCATAGTGCTGAGCAA 59.559 43.478 9.51 0.00 41.47 3.91
7880 10250 4.438336 CCATTTGTCATAGTGCTGAGCAAG 60.438 45.833 9.51 0.00 41.47 4.01
7888 10258 2.745492 GCTGAGCAAGCGAGCCTT 60.745 61.111 0.00 0.00 43.45 4.35
7889 10259 2.748843 GCTGAGCAAGCGAGCCTTC 61.749 63.158 0.00 0.00 43.45 3.46
7890 10260 1.375140 CTGAGCAAGCGAGCCTTCA 60.375 57.895 0.00 0.00 34.23 3.02
7891 10261 0.952497 CTGAGCAAGCGAGCCTTCAA 60.952 55.000 0.00 0.00 34.23 2.69
7892 10262 0.534877 TGAGCAAGCGAGCCTTCAAA 60.535 50.000 0.00 0.00 34.23 2.69
7893 10263 0.593128 GAGCAAGCGAGCCTTCAAAA 59.407 50.000 0.00 0.00 34.23 2.44
7894 10264 1.200948 GAGCAAGCGAGCCTTCAAAAT 59.799 47.619 0.00 0.00 34.23 1.82
7895 10265 1.615392 AGCAAGCGAGCCTTCAAAATT 59.385 42.857 0.00 0.00 34.23 1.82
7896 10266 1.988467 GCAAGCGAGCCTTCAAAATTC 59.012 47.619 0.00 0.00 0.00 2.17
7897 10267 2.352127 GCAAGCGAGCCTTCAAAATTCT 60.352 45.455 0.00 0.00 0.00 2.40
7898 10268 3.496155 CAAGCGAGCCTTCAAAATTCTC 58.504 45.455 0.00 0.00 0.00 2.87
7899 10269 2.087646 AGCGAGCCTTCAAAATTCTCC 58.912 47.619 0.00 0.00 0.00 3.71
7900 10270 1.133216 GCGAGCCTTCAAAATTCTCCC 59.867 52.381 0.00 0.00 0.00 4.30
7901 10271 1.398390 CGAGCCTTCAAAATTCTCCCG 59.602 52.381 0.00 0.00 0.00 5.14
7902 10272 1.133216 GAGCCTTCAAAATTCTCCCGC 59.867 52.381 0.00 0.00 0.00 6.13
7903 10273 0.887933 GCCTTCAAAATTCTCCCGCA 59.112 50.000 0.00 0.00 0.00 5.69
7904 10274 1.272212 GCCTTCAAAATTCTCCCGCAA 59.728 47.619 0.00 0.00 0.00 4.85
7905 10275 2.288763 GCCTTCAAAATTCTCCCGCAAA 60.289 45.455 0.00 0.00 0.00 3.68
7906 10276 3.578688 CCTTCAAAATTCTCCCGCAAAG 58.421 45.455 0.00 0.00 0.00 2.77
7907 10277 3.578688 CTTCAAAATTCTCCCGCAAAGG 58.421 45.455 0.00 0.00 40.63 3.11
7908 10278 2.870175 TCAAAATTCTCCCGCAAAGGA 58.130 42.857 0.00 0.00 45.00 3.36
7909 10279 3.226777 TCAAAATTCTCCCGCAAAGGAA 58.773 40.909 0.00 0.00 45.00 3.36
7910 10280 3.831911 TCAAAATTCTCCCGCAAAGGAAT 59.168 39.130 0.00 0.00 45.00 3.01
7911 10281 4.283212 TCAAAATTCTCCCGCAAAGGAATT 59.717 37.500 0.00 0.00 45.00 2.17
7912 10282 4.890158 AAATTCTCCCGCAAAGGAATTT 57.110 36.364 0.00 0.00 45.00 1.82
7913 10283 5.993748 AAATTCTCCCGCAAAGGAATTTA 57.006 34.783 12.52 0.00 42.66 1.40
7914 10284 6.544928 AAATTCTCCCGCAAAGGAATTTAT 57.455 33.333 12.52 0.00 42.66 1.40
7915 10285 6.544928 AATTCTCCCGCAAAGGAATTTATT 57.455 33.333 0.00 0.00 45.00 1.40
7916 10286 5.993748 TTCTCCCGCAAAGGAATTTATTT 57.006 34.783 0.00 0.00 45.00 1.40
7917 10287 5.993748 TCTCCCGCAAAGGAATTTATTTT 57.006 34.783 0.00 0.00 45.00 1.82
7918 10288 7.469537 TTCTCCCGCAAAGGAATTTATTTTA 57.530 32.000 0.00 0.00 45.00 1.52
7919 10289 7.654022 TCTCCCGCAAAGGAATTTATTTTAT 57.346 32.000 0.00 0.00 45.00 1.40
7920 10290 7.712797 TCTCCCGCAAAGGAATTTATTTTATC 58.287 34.615 0.00 0.00 45.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.660552 CCGTTCAACGACGTGCCT 60.661 61.111 12.68 0.00 46.05 4.75
37 38 2.356793 GCCGATCTGATGAGCCCG 60.357 66.667 0.00 0.00 0.00 6.13
678 687 2.146061 GCCATGGAGGAGAGGGAGG 61.146 68.421 18.40 0.00 41.22 4.30
682 691 4.247380 GCCGCCATGGAGGAGAGG 62.247 72.222 36.03 18.15 40.01 3.69
785 817 2.266055 CTCGAGCCTTGACCACCC 59.734 66.667 0.00 0.00 0.00 4.61
786 818 2.266055 CCTCGAGCCTTGACCACC 59.734 66.667 6.99 0.00 0.00 4.61
1020 1077 4.767255 CTCGCAGCTCCGCCCTTT 62.767 66.667 0.00 0.00 0.00 3.11
1137 1200 1.079819 CTTCACCATCACGACGCCT 60.080 57.895 0.00 0.00 0.00 5.52
1305 1385 1.526887 CACGCTATAATTCGGCCACAG 59.473 52.381 2.24 0.00 0.00 3.66
3630 5650 8.863872 AGCAACCATTGAAGTAACTATTAAGT 57.136 30.769 0.00 0.00 37.65 2.24
3645 5665 3.119029 CCACAAATCCCTAGCAACCATTG 60.119 47.826 0.00 0.00 0.00 2.82
3670 5690 1.078143 CAGCACCAAGGCCTCCTAC 60.078 63.158 5.23 0.00 31.13 3.18
3681 5701 3.393089 ACAAACACAAAAACAGCACCA 57.607 38.095 0.00 0.00 0.00 4.17
3688 5708 6.419710 GGCTCATTACCTACAAACACAAAAAC 59.580 38.462 0.00 0.00 0.00 2.43
3699 5719 2.238646 CCCAACAGGCTCATTACCTACA 59.761 50.000 0.00 0.00 35.10 2.74
3740 5760 4.614993 CGACATCGGTTTGTTGGCTAAAAT 60.615 41.667 0.00 0.00 35.37 1.82
3744 5764 1.270412 ACGACATCGGTTTGTTGGCTA 60.270 47.619 6.21 0.00 44.95 3.93
3790 5811 8.782533 AGAAAACTACGCATTTCAAACTTAAG 57.217 30.769 0.00 0.00 37.87 1.85
3794 5815 6.038271 ACAGAGAAAACTACGCATTTCAAACT 59.962 34.615 0.00 0.00 37.87 2.66
3850 5995 2.426738 CTGGTGATCTCACTGTCTCCTC 59.573 54.545 9.98 0.00 45.73 3.71
3864 6009 6.947464 ACTTTATGTACAGTTAGCTGGTGAT 58.053 36.000 11.56 2.24 46.62 3.06
3883 6028 9.793259 AATCTTTCTACATTTCCAGTGACTTTA 57.207 29.630 0.00 0.00 0.00 1.85
3889 6034 7.439157 TCACAATCTTTCTACATTTCCAGTG 57.561 36.000 0.00 0.00 0.00 3.66
3963 6166 6.239232 CGTCTACACCTAACCAGCCTAATTAT 60.239 42.308 0.00 0.00 0.00 1.28
3966 6169 3.383825 CGTCTACACCTAACCAGCCTAAT 59.616 47.826 0.00 0.00 0.00 1.73
4029 6233 5.337813 GGACGGAGGGAGTATTACAAAGAAA 60.338 44.000 0.00 0.00 0.00 2.52
4042 6246 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4043 6247 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4044 6248 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4045 6249 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4046 6250 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4047 6251 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4048 6252 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4049 6253 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
4050 6254 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
4051 6255 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
4052 6256 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
4053 6257 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
4054 6258 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
4055 6259 6.927294 ATCCATTTCTCCGACAAGTATTTC 57.073 37.500 0.00 0.00 0.00 2.17
4060 6264 8.980481 AAAATATATCCATTTCTCCGACAAGT 57.020 30.769 0.00 0.00 0.00 3.16
4079 6283 9.408648 ACTTGTCGGAGAAATGGATAAAAATAT 57.591 29.630 0.00 0.00 39.69 1.28
4080 6284 8.801882 ACTTGTCGGAGAAATGGATAAAAATA 57.198 30.769 0.00 0.00 39.69 1.40
4081 6285 7.703058 ACTTGTCGGAGAAATGGATAAAAAT 57.297 32.000 0.00 0.00 39.69 1.82
4082 6286 8.801882 ATACTTGTCGGAGAAATGGATAAAAA 57.198 30.769 0.00 0.00 39.69 1.94
4083 6287 8.801882 AATACTTGTCGGAGAAATGGATAAAA 57.198 30.769 0.00 0.00 39.69 1.52
4084 6288 8.801882 AAATACTTGTCGGAGAAATGGATAAA 57.198 30.769 0.00 0.00 39.69 1.40
4085 6289 7.497909 GGAAATACTTGTCGGAGAAATGGATAA 59.502 37.037 0.00 0.00 39.69 1.75
4086 6290 6.990349 GGAAATACTTGTCGGAGAAATGGATA 59.010 38.462 0.00 0.00 39.69 2.59
4087 6291 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
4088 6292 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
4089 6293 4.941263 TGGAAATACTTGTCGGAGAAATGG 59.059 41.667 0.00 0.00 39.69 3.16
4090 6294 5.874810 TCTGGAAATACTTGTCGGAGAAATG 59.125 40.000 0.00 0.00 39.69 2.32
4091 6295 5.875359 GTCTGGAAATACTTGTCGGAGAAAT 59.125 40.000 0.00 0.00 39.69 2.17
4092 6296 5.235516 GTCTGGAAATACTTGTCGGAGAAA 58.764 41.667 0.00 0.00 39.69 2.52
4093 6297 4.617530 CGTCTGGAAATACTTGTCGGAGAA 60.618 45.833 0.00 0.00 39.69 2.87
4094 6298 3.119602 CGTCTGGAAATACTTGTCGGAGA 60.120 47.826 0.00 0.00 0.00 3.71
4095 6299 3.179830 CGTCTGGAAATACTTGTCGGAG 58.820 50.000 0.00 0.00 0.00 4.63
4096 6300 2.094390 CCGTCTGGAAATACTTGTCGGA 60.094 50.000 0.00 0.00 38.03 4.55
4097 6301 2.094390 TCCGTCTGGAAATACTTGTCGG 60.094 50.000 0.00 0.00 42.85 4.79
4098 6302 3.179830 CTCCGTCTGGAAATACTTGTCG 58.820 50.000 0.00 0.00 45.87 4.35
4099 6303 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
4100 6304 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
4101 6305 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
4102 6306 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
4103 6307 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
4104 6308 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
4105 6309 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
4106 6310 2.544844 TACTCCCTCCGTCTGGAAAT 57.455 50.000 0.00 0.00 45.87 2.17
4107 6311 2.544844 ATACTCCCTCCGTCTGGAAA 57.455 50.000 0.00 0.00 45.87 3.13
4108 6312 2.544844 AATACTCCCTCCGTCTGGAA 57.455 50.000 0.00 0.00 45.87 3.53
4109 6313 2.385803 GAAATACTCCCTCCGTCTGGA 58.614 52.381 0.00 0.00 43.88 3.86
4110 6314 1.413077 GGAAATACTCCCTCCGTCTGG 59.587 57.143 0.00 0.00 38.44 3.86
4111 6315 2.389715 AGGAAATACTCCCTCCGTCTG 58.610 52.381 0.00 0.00 46.81 3.51
4112 6316 2.850695 AGGAAATACTCCCTCCGTCT 57.149 50.000 0.00 0.00 46.81 4.18
4113 6317 5.349061 TTTAAGGAAATACTCCCTCCGTC 57.651 43.478 0.00 0.00 46.81 4.79
4114 6318 5.742063 CTTTTAAGGAAATACTCCCTCCGT 58.258 41.667 0.00 0.00 46.81 4.69
4115 6319 4.575236 GCTTTTAAGGAAATACTCCCTCCG 59.425 45.833 0.00 0.00 46.81 4.63
4116 6320 5.756918 AGCTTTTAAGGAAATACTCCCTCC 58.243 41.667 0.00 0.00 46.81 4.30
4117 6321 8.841300 CATTAGCTTTTAAGGAAATACTCCCTC 58.159 37.037 0.00 0.00 46.81 4.30
4118 6322 7.780271 CCATTAGCTTTTAAGGAAATACTCCCT 59.220 37.037 0.00 0.00 46.81 4.20
4119 6323 7.560262 ACCATTAGCTTTTAAGGAAATACTCCC 59.440 37.037 0.00 0.00 46.81 4.30
4120 6324 8.521170 ACCATTAGCTTTTAAGGAAATACTCC 57.479 34.615 0.00 0.00 45.81 3.85
4137 6341 6.975772 TCCAATACGCAATTTTAACCATTAGC 59.024 34.615 0.00 0.00 0.00 3.09
4150 6356 4.675510 CTTTGCAATCTCCAATACGCAAT 58.324 39.130 0.00 0.00 38.96 3.56
4224 6431 3.567164 AGGCTCAAACACACAGAAATCAG 59.433 43.478 0.00 0.00 0.00 2.90
4225 6432 3.554934 AGGCTCAAACACACAGAAATCA 58.445 40.909 0.00 0.00 0.00 2.57
4456 6663 5.178797 GTCTGCTTGTGATATGTAGGTTGT 58.821 41.667 0.00 0.00 0.00 3.32
4657 6864 5.827797 GGACTGACAGTGAAGATAGAGATCT 59.172 44.000 14.14 0.00 44.79 2.75
4675 6882 1.685765 CCCGAGGACCATGGACTGA 60.686 63.158 21.47 0.00 0.00 3.41
4818 7025 4.345854 ACCGATATGTTTTAGCCCCAAAA 58.654 39.130 0.00 0.00 0.00 2.44
4853 7060 2.173519 CAGAACCAAGATGTGCCCAAT 58.826 47.619 0.00 0.00 0.00 3.16
4874 7081 9.102757 CAGACATACAATGTATAAAGAAGTGCT 57.897 33.333 5.49 0.00 45.03 4.40
4922 7129 4.731313 AACAAAGGATCAAAGGACCTCT 57.269 40.909 0.00 0.00 33.16 3.69
4927 7134 5.188751 ACCAAACAAACAAAGGATCAAAGGA 59.811 36.000 0.00 0.00 0.00 3.36
5134 7342 1.135546 CACAAAGACCGTGTTGTGCAA 60.136 47.619 10.32 0.00 45.70 4.08
5174 7382 8.729805 TGTGCATCATATGTGTATAGAAAACA 57.270 30.769 1.90 0.00 0.00 2.83
5317 7527 5.675684 AGAGTGAAACCCAAACAAACATT 57.324 34.783 0.00 0.00 37.80 2.71
5320 7530 6.425417 TCAAAAAGAGTGAAACCCAAACAAAC 59.575 34.615 0.00 0.00 37.80 2.93
5423 7633 7.725251 TCCAACTTTCTTTGTTGCATCTTTAT 58.275 30.769 0.00 0.00 42.25 1.40
5811 8021 8.825745 GCATGATTTCTGTGTTTCCTTTAAAAA 58.174 29.630 0.00 0.00 0.00 1.94
5816 8026 5.796424 AGCATGATTTCTGTGTTTCCTTT 57.204 34.783 0.00 0.00 0.00 3.11
6085 8296 4.399618 GGTCTAGCTTATCACTGACACTGA 59.600 45.833 0.00 0.00 0.00 3.41
6354 8605 4.466827 TGTCCAGATAGCAGTCCGTTATA 58.533 43.478 0.00 0.00 0.00 0.98
6488 8739 2.704572 CTCCATGGTGACTTTCAGGTC 58.295 52.381 12.58 0.00 36.81 3.85
6521 8781 1.118965 TGAGGCCGAACTGGTTCAGA 61.119 55.000 12.94 0.00 41.21 3.27
6701 8962 2.211250 ACAGCTACTCCGTCAAGGTA 57.789 50.000 0.00 0.00 41.99 3.08
6705 8966 2.211250 AGGTACAGCTACTCCGTCAA 57.789 50.000 0.00 0.00 0.00 3.18
6822 9084 6.812998 ACAACTTGTACAAGAGCTTACAGTA 58.187 36.000 36.14 0.00 40.79 2.74
6881 9147 5.838521 TCAGCCAATATCAGTACTCCATACA 59.161 40.000 0.00 0.00 36.09 2.29
6901 9167 2.358957 TGCAACACAGTATCCATCAGC 58.641 47.619 0.00 0.00 0.00 4.26
6902 9168 4.005650 ACTTGCAACACAGTATCCATCAG 58.994 43.478 0.00 0.00 0.00 2.90
6916 9182 8.539674 CCAAAGAAATTACTTGTAACTTGCAAC 58.460 33.333 0.00 0.00 0.00 4.17
7073 9419 3.944015 GCTTCCATATGCCAGATGTATCC 59.056 47.826 0.00 0.00 0.00 2.59
7075 9421 4.567116 CCAGCTTCCATATGCCAGATGTAT 60.567 45.833 13.53 0.00 0.00 2.29
7094 9440 6.712547 AGCAATAGGATAATAAACAGTCCAGC 59.287 38.462 0.00 0.00 33.12 4.85
7104 9450 5.534914 ATGGGGCAGCAATAGGATAATAA 57.465 39.130 0.00 0.00 0.00 1.40
7105 9451 5.263599 CAATGGGGCAGCAATAGGATAATA 58.736 41.667 0.00 0.00 0.00 0.98
7106 9452 4.091549 CAATGGGGCAGCAATAGGATAAT 58.908 43.478 0.00 0.00 0.00 1.28
7114 9460 0.905809 TTCAGCAATGGGGCAGCAAT 60.906 50.000 0.00 0.00 35.83 3.56
7144 9490 2.191815 TGTAATGATGTTGCGCATGC 57.808 45.000 12.75 7.91 38.06 4.06
7275 9632 5.070981 TCCTGGAAACTGATGATATGGAGTC 59.929 44.000 0.00 0.00 0.00 3.36
7356 9713 5.186198 CGGAGTTCCTGGAAATATGAGTTT 58.814 41.667 11.40 0.00 0.00 2.66
7361 9718 2.874701 CAGCGGAGTTCCTGGAAATATG 59.125 50.000 11.40 7.06 0.00 1.78
7386 9743 4.654915 AGTGTGGATGATGATCAAACACA 58.345 39.130 26.72 24.98 43.56 3.72
7427 9784 0.401738 CAGAGAAGTGGGGAAGGCAA 59.598 55.000 0.00 0.00 0.00 4.52
7428 9785 0.473694 TCAGAGAAGTGGGGAAGGCA 60.474 55.000 0.00 0.00 0.00 4.75
7434 9791 4.144297 TCAACAAAATCAGAGAAGTGGGG 58.856 43.478 0.00 0.00 0.00 4.96
7511 9872 2.054232 AGGAATCTGCAGCATGAAGG 57.946 50.000 9.47 0.00 44.09 3.46
7512 9873 2.358267 GGAAGGAATCTGCAGCATGAAG 59.642 50.000 9.47 0.00 45.89 3.02
7513 9874 2.291089 TGGAAGGAATCTGCAGCATGAA 60.291 45.455 9.47 0.00 39.69 2.57
7547 9916 6.998802 AGTAAATTAATGCTAGAGAGGCGAT 58.001 36.000 0.00 0.00 0.00 4.58
7548 9917 6.406692 AGTAAATTAATGCTAGAGAGGCGA 57.593 37.500 0.00 0.00 0.00 5.54
7549 9918 7.348201 CAAAGTAAATTAATGCTAGAGAGGCG 58.652 38.462 0.00 0.00 0.00 5.52
7550 9919 7.499232 TCCAAAGTAAATTAATGCTAGAGAGGC 59.501 37.037 0.00 0.00 0.00 4.70
7551 9920 8.964476 TCCAAAGTAAATTAATGCTAGAGAGG 57.036 34.615 0.00 0.00 0.00 3.69
7552 9921 8.555361 GCTCCAAAGTAAATTAATGCTAGAGAG 58.445 37.037 0.00 0.00 0.00 3.20
7553 9922 8.267894 AGCTCCAAAGTAAATTAATGCTAGAGA 58.732 33.333 0.00 0.00 0.00 3.10
7554 9923 8.443953 AGCTCCAAAGTAAATTAATGCTAGAG 57.556 34.615 0.00 0.00 0.00 2.43
7587 9956 2.562738 GTGGATTGGAAGAACAAAGGGG 59.437 50.000 0.00 0.00 33.48 4.79
7638 10007 2.545742 GCGGGCATCTGTTTTTCAAGTT 60.546 45.455 0.00 0.00 0.00 2.66
7659 10029 1.732259 CAACAGGGATTTCGAAGACCG 59.268 52.381 13.72 9.41 34.32 4.79
7660 10030 1.468914 GCAACAGGGATTTCGAAGACC 59.531 52.381 12.33 12.33 34.32 3.85
7682 10052 5.163519 GGATATGAACCCAACATGTTTCCTG 60.164 44.000 8.77 0.00 0.00 3.86
7692 10062 6.530019 AACAAAGATGGATATGAACCCAAC 57.470 37.500 0.00 0.00 35.85 3.77
7700 10070 7.161773 ACTGTTCCAAACAAAGATGGATATG 57.838 36.000 0.00 0.00 44.83 1.78
7710 10080 6.994221 TGGAAAGTTAACTGTTCCAAACAAA 58.006 32.000 29.87 17.18 46.03 2.83
7711 10081 6.591750 TGGAAAGTTAACTGTTCCAAACAA 57.408 33.333 29.87 17.62 46.03 2.83
7716 10086 6.833041 TGTATCTGGAAAGTTAACTGTTCCA 58.167 36.000 29.84 29.84 46.66 3.53
7717 10087 7.148239 CCATGTATCTGGAAAGTTAACTGTTCC 60.148 40.741 26.34 26.34 41.09 3.62
7718 10088 7.626452 GCCATGTATCTGGAAAGTTAACTGTTC 60.626 40.741 9.34 13.79 38.69 3.18
7719 10089 6.151144 GCCATGTATCTGGAAAGTTAACTGTT 59.849 38.462 9.34 5.86 38.69 3.16
7720 10090 5.648092 GCCATGTATCTGGAAAGTTAACTGT 59.352 40.000 9.34 2.64 38.69 3.55
7721 10091 5.066505 GGCCATGTATCTGGAAAGTTAACTG 59.933 44.000 9.34 0.00 38.69 3.16
7722 10092 5.193679 GGCCATGTATCTGGAAAGTTAACT 58.806 41.667 1.12 1.12 38.69 2.24
7723 10093 4.947388 TGGCCATGTATCTGGAAAGTTAAC 59.053 41.667 0.00 0.00 38.69 2.01
7724 10094 5.186256 TGGCCATGTATCTGGAAAGTTAA 57.814 39.130 0.00 0.00 38.69 2.01
7725 10095 4.853468 TGGCCATGTATCTGGAAAGTTA 57.147 40.909 0.00 0.00 38.69 2.24
7726 10096 3.737559 TGGCCATGTATCTGGAAAGTT 57.262 42.857 0.00 0.00 38.69 2.66
7727 10097 3.624777 CTTGGCCATGTATCTGGAAAGT 58.375 45.455 6.09 0.00 38.69 2.66
7728 10098 2.954318 CCTTGGCCATGTATCTGGAAAG 59.046 50.000 6.09 0.00 38.69 2.62
7729 10099 2.311542 ACCTTGGCCATGTATCTGGAAA 59.688 45.455 6.09 0.00 38.69 3.13
7730 10100 1.922447 ACCTTGGCCATGTATCTGGAA 59.078 47.619 6.09 0.00 38.69 3.53
7731 10101 1.212688 CACCTTGGCCATGTATCTGGA 59.787 52.381 6.09 0.00 38.69 3.86
7732 10102 1.683943 CACCTTGGCCATGTATCTGG 58.316 55.000 6.09 3.18 39.45 3.86
7733 10103 1.212688 TCCACCTTGGCCATGTATCTG 59.787 52.381 6.09 0.00 37.47 2.90
7734 10104 1.492176 CTCCACCTTGGCCATGTATCT 59.508 52.381 6.09 0.00 37.47 1.98
7735 10105 1.477558 CCTCCACCTTGGCCATGTATC 60.478 57.143 6.09 0.00 37.47 2.24
7736 10106 0.552848 CCTCCACCTTGGCCATGTAT 59.447 55.000 6.09 0.00 37.47 2.29
7737 10107 1.998530 CCTCCACCTTGGCCATGTA 59.001 57.895 6.09 0.00 37.47 2.29
7738 10108 2.765969 CCTCCACCTTGGCCATGT 59.234 61.111 6.09 4.01 37.47 3.21
7739 10109 2.757099 GCCTCCACCTTGGCCATG 60.757 66.667 6.09 9.47 43.11 3.66
7744 10114 1.251251 CAGAAAAGCCTCCACCTTGG 58.749 55.000 0.00 0.00 39.43 3.61
7745 10115 0.600057 GCAGAAAAGCCTCCACCTTG 59.400 55.000 0.00 0.00 0.00 3.61
7746 10116 0.185901 TGCAGAAAAGCCTCCACCTT 59.814 50.000 0.00 0.00 0.00 3.50
7747 10117 0.185901 TTGCAGAAAAGCCTCCACCT 59.814 50.000 0.00 0.00 0.00 4.00
7748 10118 0.315251 GTTGCAGAAAAGCCTCCACC 59.685 55.000 0.00 0.00 0.00 4.61
7749 10119 1.032014 TGTTGCAGAAAAGCCTCCAC 58.968 50.000 0.00 0.00 0.00 4.02
7750 10120 1.032014 GTGTTGCAGAAAAGCCTCCA 58.968 50.000 0.00 0.00 0.00 3.86
7751 10121 1.322442 AGTGTTGCAGAAAAGCCTCC 58.678 50.000 0.00 0.00 0.00 4.30
7752 10122 3.403038 TCTAGTGTTGCAGAAAAGCCTC 58.597 45.455 0.00 0.00 0.00 4.70
7753 10123 3.406764 CTCTAGTGTTGCAGAAAAGCCT 58.593 45.455 0.00 0.00 0.00 4.58
7754 10124 2.095516 GCTCTAGTGTTGCAGAAAAGCC 60.096 50.000 0.00 0.00 0.00 4.35
7755 10125 2.810852 AGCTCTAGTGTTGCAGAAAAGC 59.189 45.455 0.00 0.00 0.00 3.51
7756 10126 5.473931 TCTAGCTCTAGTGTTGCAGAAAAG 58.526 41.667 0.00 0.00 34.84 2.27
7757 10127 5.468540 TCTAGCTCTAGTGTTGCAGAAAA 57.531 39.130 0.00 0.00 34.84 2.29
7758 10128 4.081972 CCTCTAGCTCTAGTGTTGCAGAAA 60.082 45.833 0.00 0.00 34.84 2.52
7759 10129 3.445450 CCTCTAGCTCTAGTGTTGCAGAA 59.555 47.826 0.00 0.00 34.84 3.02
7760 10130 3.020274 CCTCTAGCTCTAGTGTTGCAGA 58.980 50.000 0.00 0.00 34.84 4.26
7761 10131 2.100584 CCCTCTAGCTCTAGTGTTGCAG 59.899 54.545 0.00 0.00 34.84 4.41
7762 10132 2.103373 CCCTCTAGCTCTAGTGTTGCA 58.897 52.381 0.00 0.00 34.84 4.08
7763 10133 1.410882 CCCCTCTAGCTCTAGTGTTGC 59.589 57.143 0.00 0.00 34.84 4.17
7764 10134 1.410882 GCCCCTCTAGCTCTAGTGTTG 59.589 57.143 0.00 0.00 34.84 3.33
7765 10135 1.289530 AGCCCCTCTAGCTCTAGTGTT 59.710 52.381 0.00 0.00 34.91 3.32
7766 10136 0.930726 AGCCCCTCTAGCTCTAGTGT 59.069 55.000 0.00 0.00 34.91 3.55
7767 10137 3.839979 AGCCCCTCTAGCTCTAGTG 57.160 57.895 0.00 2.12 34.91 2.74
7773 10143 1.297409 TACTGGGAGCCCCTCTAGCT 61.297 60.000 11.10 0.00 45.70 3.32
7774 10144 0.178918 ATACTGGGAGCCCCTCTAGC 60.179 60.000 11.10 0.00 45.70 3.42
7775 10145 1.148027 TGATACTGGGAGCCCCTCTAG 59.852 57.143 11.10 3.79 45.70 2.43
7776 10146 1.133136 GTGATACTGGGAGCCCCTCTA 60.133 57.143 11.10 2.05 45.70 2.43
7777 10147 0.399233 GTGATACTGGGAGCCCCTCT 60.399 60.000 11.10 0.08 45.70 3.69
7778 10148 1.749334 CGTGATACTGGGAGCCCCTC 61.749 65.000 11.10 2.02 45.70 4.30
7779 10149 1.762460 CGTGATACTGGGAGCCCCT 60.762 63.158 11.10 0.00 45.70 4.79
7780 10150 1.122019 ATCGTGATACTGGGAGCCCC 61.122 60.000 2.49 3.42 45.71 5.80
7781 10151 0.759346 AATCGTGATACTGGGAGCCC 59.241 55.000 0.00 0.00 0.00 5.19
7782 10152 3.555168 CCTTAATCGTGATACTGGGAGCC 60.555 52.174 0.00 0.00 0.00 4.70
7783 10153 3.069729 ACCTTAATCGTGATACTGGGAGC 59.930 47.826 0.00 0.00 0.00 4.70
7784 10154 4.939052 ACCTTAATCGTGATACTGGGAG 57.061 45.455 0.00 0.00 0.00 4.30
7785 10155 5.687166 AAACCTTAATCGTGATACTGGGA 57.313 39.130 0.00 0.00 0.00 4.37
7786 10156 7.442656 AGATAAACCTTAATCGTGATACTGGG 58.557 38.462 0.00 0.00 0.00 4.45
7787 10157 8.888579 AAGATAAACCTTAATCGTGATACTGG 57.111 34.615 0.00 0.00 0.00 4.00
7788 10158 9.529325 TGAAGATAAACCTTAATCGTGATACTG 57.471 33.333 0.00 0.00 0.00 2.74
7801 10171 8.718656 ACAGGCTCTATAATGAAGATAAACCTT 58.281 33.333 0.00 0.00 0.00 3.50
7802 10172 8.268878 ACAGGCTCTATAATGAAGATAAACCT 57.731 34.615 0.00 0.00 0.00 3.50
7803 10173 9.998106 TTACAGGCTCTATAATGAAGATAAACC 57.002 33.333 0.00 0.00 0.00 3.27
7805 10175 9.712305 GCTTACAGGCTCTATAATGAAGATAAA 57.288 33.333 0.00 0.00 0.00 1.40
7806 10176 8.870116 TGCTTACAGGCTCTATAATGAAGATAA 58.130 33.333 0.00 0.00 0.00 1.75
7807 10177 8.422577 TGCTTACAGGCTCTATAATGAAGATA 57.577 34.615 0.00 0.00 0.00 1.98
7808 10178 7.234371 TCTGCTTACAGGCTCTATAATGAAGAT 59.766 37.037 0.00 0.00 44.59 2.40
7809 10179 6.551227 TCTGCTTACAGGCTCTATAATGAAGA 59.449 38.462 0.00 0.00 44.59 2.87
7810 10180 6.753180 TCTGCTTACAGGCTCTATAATGAAG 58.247 40.000 0.00 0.00 44.59 3.02
7811 10181 6.731292 TCTGCTTACAGGCTCTATAATGAA 57.269 37.500 0.00 0.00 44.59 2.57
7812 10182 6.924913 ATCTGCTTACAGGCTCTATAATGA 57.075 37.500 0.00 0.00 44.59 2.57
7813 10183 7.658982 TGAAATCTGCTTACAGGCTCTATAATG 59.341 37.037 0.00 0.00 44.59 1.90
7814 10184 7.659390 GTGAAATCTGCTTACAGGCTCTATAAT 59.341 37.037 0.00 0.00 44.59 1.28
7815 10185 6.986817 GTGAAATCTGCTTACAGGCTCTATAA 59.013 38.462 0.00 0.00 44.59 0.98
7816 10186 6.463049 GGTGAAATCTGCTTACAGGCTCTATA 60.463 42.308 0.00 0.00 44.59 1.31
7817 10187 5.363939 GTGAAATCTGCTTACAGGCTCTAT 58.636 41.667 0.00 0.00 44.59 1.98
7818 10188 4.383118 GGTGAAATCTGCTTACAGGCTCTA 60.383 45.833 0.00 0.00 44.59 2.43
7819 10189 3.604582 GTGAAATCTGCTTACAGGCTCT 58.395 45.455 0.00 0.00 44.59 4.09
7820 10190 2.680339 GGTGAAATCTGCTTACAGGCTC 59.320 50.000 0.00 0.00 44.59 4.70
7821 10191 2.716217 GGTGAAATCTGCTTACAGGCT 58.284 47.619 0.00 0.00 44.59 4.58
7822 10192 1.398390 CGGTGAAATCTGCTTACAGGC 59.602 52.381 0.00 0.00 44.59 4.85
7823 10193 2.932614 CTCGGTGAAATCTGCTTACAGG 59.067 50.000 0.00 0.00 44.59 4.00
7824 10194 3.849911 TCTCGGTGAAATCTGCTTACAG 58.150 45.455 0.00 0.00 45.95 2.74
7825 10195 3.953712 TCTCGGTGAAATCTGCTTACA 57.046 42.857 0.00 0.00 0.00 2.41
7826 10196 8.764524 ATATATTCTCGGTGAAATCTGCTTAC 57.235 34.615 0.00 0.00 38.29 2.34
7827 10197 9.208022 CAATATATTCTCGGTGAAATCTGCTTA 57.792 33.333 0.00 0.00 38.29 3.09
7828 10198 7.308229 GCAATATATTCTCGGTGAAATCTGCTT 60.308 37.037 0.00 0.00 38.29 3.91
7829 10199 6.148480 GCAATATATTCTCGGTGAAATCTGCT 59.852 38.462 0.00 0.00 38.29 4.24
7830 10200 6.310197 GCAATATATTCTCGGTGAAATCTGC 58.690 40.000 0.00 0.00 38.29 4.26
7831 10201 6.128172 GGGCAATATATTCTCGGTGAAATCTG 60.128 42.308 0.00 0.00 38.29 2.90
7832 10202 5.940470 GGGCAATATATTCTCGGTGAAATCT 59.060 40.000 0.00 0.00 38.29 2.40
7833 10203 5.123979 GGGGCAATATATTCTCGGTGAAATC 59.876 44.000 0.00 0.00 38.29 2.17
7834 10204 5.010282 GGGGCAATATATTCTCGGTGAAAT 58.990 41.667 0.00 0.00 38.29 2.17
7835 10205 4.394729 GGGGCAATATATTCTCGGTGAAA 58.605 43.478 0.00 0.00 38.29 2.69
7836 10206 3.244770 GGGGGCAATATATTCTCGGTGAA 60.245 47.826 0.00 0.00 39.24 3.18
7837 10207 2.304761 GGGGGCAATATATTCTCGGTGA 59.695 50.000 0.00 0.00 0.00 4.02
7838 10208 2.039746 TGGGGGCAATATATTCTCGGTG 59.960 50.000 0.00 0.00 0.00 4.94
7839 10209 2.344592 TGGGGGCAATATATTCTCGGT 58.655 47.619 0.00 0.00 0.00 4.69
7840 10210 3.652057 ATGGGGGCAATATATTCTCGG 57.348 47.619 0.00 0.00 0.00 4.63
7841 10211 4.766891 ACAAATGGGGGCAATATATTCTCG 59.233 41.667 0.00 0.00 0.00 4.04
7842 10212 5.774690 TGACAAATGGGGGCAATATATTCTC 59.225 40.000 0.00 0.00 0.00 2.87
7843 10213 5.714863 TGACAAATGGGGGCAATATATTCT 58.285 37.500 0.00 0.00 0.00 2.40
7844 10214 6.610075 ATGACAAATGGGGGCAATATATTC 57.390 37.500 0.00 0.00 0.00 1.75
7845 10215 7.178983 CACTATGACAAATGGGGGCAATATATT 59.821 37.037 0.00 0.00 0.00 1.28
7846 10216 6.664816 CACTATGACAAATGGGGGCAATATAT 59.335 38.462 0.00 0.00 0.00 0.86
7847 10217 6.009589 CACTATGACAAATGGGGGCAATATA 58.990 40.000 0.00 0.00 0.00 0.86
7848 10218 4.834496 CACTATGACAAATGGGGGCAATAT 59.166 41.667 0.00 0.00 0.00 1.28
7849 10219 4.214310 CACTATGACAAATGGGGGCAATA 58.786 43.478 0.00 0.00 0.00 1.90
7850 10220 3.033184 CACTATGACAAATGGGGGCAAT 58.967 45.455 0.00 0.00 0.00 3.56
7851 10221 2.455557 CACTATGACAAATGGGGGCAA 58.544 47.619 0.00 0.00 0.00 4.52
7852 10222 1.959508 GCACTATGACAAATGGGGGCA 60.960 52.381 0.00 0.00 0.00 5.36
7853 10223 0.746659 GCACTATGACAAATGGGGGC 59.253 55.000 0.00 0.00 0.00 5.80
7854 10224 2.026641 CAGCACTATGACAAATGGGGG 58.973 52.381 0.00 0.00 0.00 5.40
7855 10225 2.947652 CTCAGCACTATGACAAATGGGG 59.052 50.000 0.00 0.00 0.00 4.96
7856 10226 2.357009 GCTCAGCACTATGACAAATGGG 59.643 50.000 0.00 0.00 0.00 4.00
7857 10227 3.011818 TGCTCAGCACTATGACAAATGG 58.988 45.455 0.00 0.00 31.71 3.16
7858 10228 4.659088 CTTGCTCAGCACTATGACAAATG 58.341 43.478 0.00 0.00 38.71 2.32
7859 10229 4.959596 CTTGCTCAGCACTATGACAAAT 57.040 40.909 0.00 0.00 38.71 2.32
7871 10241 2.745492 AAGGCTCGCTTGCTCAGC 60.745 61.111 0.00 0.00 46.31 4.26
7872 10242 0.952497 TTGAAGGCTCGCTTGCTCAG 60.952 55.000 0.00 0.00 0.00 3.35
7873 10243 0.534877 TTTGAAGGCTCGCTTGCTCA 60.535 50.000 0.00 0.00 0.00 4.26
7874 10244 0.593128 TTTTGAAGGCTCGCTTGCTC 59.407 50.000 0.00 0.00 0.00 4.26
7875 10245 1.251251 ATTTTGAAGGCTCGCTTGCT 58.749 45.000 0.00 0.00 0.00 3.91
7876 10246 1.988467 GAATTTTGAAGGCTCGCTTGC 59.012 47.619 0.00 0.00 0.00 4.01
7877 10247 3.496155 GAGAATTTTGAAGGCTCGCTTG 58.504 45.455 0.00 0.00 0.00 4.01
7878 10248 2.489722 GGAGAATTTTGAAGGCTCGCTT 59.510 45.455 0.00 0.00 0.00 4.68
7879 10249 2.087646 GGAGAATTTTGAAGGCTCGCT 58.912 47.619 0.00 0.00 0.00 4.93
7880 10250 1.133216 GGGAGAATTTTGAAGGCTCGC 59.867 52.381 0.00 0.00 0.00 5.03
7881 10251 1.398390 CGGGAGAATTTTGAAGGCTCG 59.602 52.381 0.00 0.00 0.00 5.03
7882 10252 1.133216 GCGGGAGAATTTTGAAGGCTC 59.867 52.381 0.00 0.00 0.00 4.70
7883 10253 1.177401 GCGGGAGAATTTTGAAGGCT 58.823 50.000 0.00 0.00 0.00 4.58
7884 10254 0.887933 TGCGGGAGAATTTTGAAGGC 59.112 50.000 0.00 0.00 0.00 4.35
7885 10255 3.578688 CTTTGCGGGAGAATTTTGAAGG 58.421 45.455 0.00 0.00 0.00 3.46
7886 10256 3.255642 TCCTTTGCGGGAGAATTTTGAAG 59.744 43.478 0.00 0.00 0.00 3.02
7887 10257 3.226777 TCCTTTGCGGGAGAATTTTGAA 58.773 40.909 0.00 0.00 0.00 2.69
7888 10258 2.870175 TCCTTTGCGGGAGAATTTTGA 58.130 42.857 0.00 0.00 0.00 2.69
7889 10259 3.658757 TTCCTTTGCGGGAGAATTTTG 57.341 42.857 0.00 0.00 36.66 2.44
7890 10260 4.890158 AATTCCTTTGCGGGAGAATTTT 57.110 36.364 0.00 0.00 35.89 1.82
7891 10261 4.890158 AAATTCCTTTGCGGGAGAATTT 57.110 36.364 10.00 10.00 41.65 1.82
7892 10262 6.544928 AATAAATTCCTTTGCGGGAGAATT 57.455 33.333 0.00 0.00 39.89 2.17
7893 10263 6.544928 AAATAAATTCCTTTGCGGGAGAAT 57.455 33.333 0.00 0.00 36.66 2.40
7894 10264 5.993748 AAATAAATTCCTTTGCGGGAGAA 57.006 34.783 0.00 0.00 36.66 2.87
7895 10265 5.993748 AAAATAAATTCCTTTGCGGGAGA 57.006 34.783 0.00 0.00 36.66 3.71
7896 10266 7.930513 GATAAAATAAATTCCTTTGCGGGAG 57.069 36.000 0.00 0.00 36.66 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.