Multiple sequence alignment - TraesCS5A01G442300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G442300 chr5A 100.000 8402 0 0 1 8402 622772796 622781197 0.000000e+00 15516.0
1 TraesCS5A01G442300 chr5A 95.833 144 6 0 6425 6568 320214263 320214406 5.070000e-57 233.0
2 TraesCS5A01G442300 chr5A 86.567 67 6 3 3045 3108 116582367 116582433 4.210000e-08 71.3
3 TraesCS5A01G442300 chr5B 92.483 5787 264 65 1 5679 617824180 617829903 0.000000e+00 8118.0
4 TraesCS5A01G442300 chr5B 92.382 2783 123 33 5679 8396 617829956 617832714 0.000000e+00 3882.0
5 TraesCS5A01G442300 chr5B 90.361 166 16 0 6402 6567 547158037 547157872 1.420000e-52 219.0
6 TraesCS5A01G442300 chr5B 89.552 67 4 3 5678 5742 529986352 529986417 1.940000e-11 82.4
7 TraesCS5A01G442300 chr5B 86.301 73 10 0 6355 6427 136413230 136413158 6.990000e-11 80.5
8 TraesCS5A01G442300 chr5B 92.857 56 3 1 3053 3108 176594433 176594379 6.990000e-11 80.5
9 TraesCS5A01G442300 chr5D 85.710 3142 261 98 1 3045 498493213 498496263 0.000000e+00 3142.0
10 TraesCS5A01G442300 chr5D 91.322 1233 63 20 4442 5664 498497674 498498872 0.000000e+00 1644.0
11 TraesCS5A01G442300 chr5D 86.015 808 58 24 3111 3889 498496280 498497061 0.000000e+00 815.0
12 TraesCS5A01G442300 chr5D 88.908 595 45 9 5733 6323 498498873 498499450 0.000000e+00 713.0
13 TraesCS5A01G442300 chr5D 83.580 743 64 24 3672 4383 65000735 65001450 1.980000e-180 643.0
14 TraesCS5A01G442300 chr5D 93.391 348 20 2 6572 6916 498499477 498499824 5.820000e-141 512.0
15 TraesCS5A01G442300 chr5D 89.916 357 27 5 8040 8396 498554607 498554954 1.290000e-122 451.0
16 TraesCS5A01G442300 chr5D 79.653 634 72 30 6924 7541 498499868 498500460 3.650000e-108 403.0
17 TraesCS5A01G442300 chr5D 94.886 176 9 0 7195 7370 498550970 498551145 8.310000e-70 276.0
18 TraesCS5A01G442300 chr5D 96.104 154 6 0 5254 5407 65002299 65002452 1.400000e-62 252.0
19 TraesCS5A01G442300 chr5D 91.018 167 9 5 6389 6551 111788681 111788517 3.950000e-53 220.0
20 TraesCS5A01G442300 chr5D 85.714 210 14 8 4442 4649 65001446 65001641 3.070000e-49 207.0
21 TraesCS5A01G442300 chr5D 96.721 61 2 0 6820 6880 498548780 498548840 1.490000e-17 102.0
22 TraesCS5A01G442300 chr5D 96.078 51 2 0 6830 6880 498548832 498548882 5.400000e-12 84.2
23 TraesCS5A01G442300 chr5D 87.671 73 4 5 6360 6429 441356408 441356338 6.990000e-11 80.5
24 TraesCS5A01G442300 chr5D 87.097 62 8 0 3052 3113 448935353 448935414 4.210000e-08 71.3
25 TraesCS5A01G442300 chr3D 96.503 143 5 0 6425 6567 87926019 87926161 3.920000e-58 237.0
26 TraesCS5A01G442300 chr3D 90.323 62 3 3 3050 3108 573416830 573416769 2.510000e-10 78.7
27 TraesCS5A01G442300 chr2D 96.503 143 5 0 6425 6567 299891696 299891554 3.920000e-58 237.0
28 TraesCS5A01G442300 chr2D 89.552 67 5 2 5681 5745 221404323 221404389 5.400000e-12 84.2
29 TraesCS5A01G442300 chr2D 86.842 76 4 5 6352 6426 422773674 422773744 6.990000e-11 80.5
30 TraesCS5A01G442300 chr2D 91.071 56 4 1 3053 3108 91547619 91547673 3.250000e-09 75.0
31 TraesCS5A01G442300 chr4A 92.121 165 12 1 6407 6571 556761736 556761899 1.820000e-56 231.0
32 TraesCS5A01G442300 chr4A 88.710 62 7 0 3047 3108 656541127 656541066 9.040000e-10 76.8
33 TraesCS5A01G442300 chr6A 91.925 161 10 2 6413 6571 555243363 555243522 1.100000e-53 222.0
34 TraesCS5A01G442300 chr1A 91.463 164 11 3 6404 6567 368368512 368368352 1.100000e-53 222.0
35 TraesCS5A01G442300 chr3A 89.143 175 17 2 6395 6567 746316858 746316684 5.110000e-52 217.0
36 TraesCS5A01G442300 chr6B 91.250 80 5 2 6380 6458 290666335 290666257 3.210000e-19 108.0
37 TraesCS5A01G442300 chr6B 90.000 80 6 2 6380 6458 290606102 290606024 1.490000e-17 102.0
38 TraesCS5A01G442300 chr6B 91.803 61 4 1 5681 5740 68517026 68516966 5.400000e-12 84.2
39 TraesCS5A01G442300 chr6D 84.158 101 8 7 6355 6448 13600149 13600248 3.230000e-14 91.6
40 TraesCS5A01G442300 chr6D 94.643 56 2 1 5681 5735 235588532 235588587 1.500000e-12 86.1
41 TraesCS5A01G442300 chr6D 90.476 63 5 1 5679 5740 28399864 28399802 1.940000e-11 82.4
42 TraesCS5A01G442300 chr6D 95.745 47 2 0 3062 3108 249987215 249987169 9.040000e-10 76.8
43 TraesCS5A01G442300 chr6D 94.000 50 2 1 3059 3108 305732183 305732135 3.250000e-09 75.0
44 TraesCS5A01G442300 chr6D 92.308 52 2 2 3059 3108 50114922 50114973 1.170000e-08 73.1
45 TraesCS5A01G442300 chr6D 92.308 52 3 1 3058 3108 85799998 85800049 1.170000e-08 73.1
46 TraesCS5A01G442300 chr6D 93.750 48 3 0 3061 3108 94662677 94662724 1.170000e-08 73.1
47 TraesCS5A01G442300 chr6D 95.556 45 2 0 3064 3108 111665044 111665000 1.170000e-08 73.1
48 TraesCS5A01G442300 chr6D 95.556 45 2 0 3064 3108 296696787 296696743 1.170000e-08 73.1
49 TraesCS5A01G442300 chr6D 95.455 44 2 0 3065 3108 35699555 35699512 4.210000e-08 71.3
50 TraesCS5A01G442300 chr6D 92.157 51 3 1 3059 3108 39376969 39376919 4.210000e-08 71.3
51 TraesCS5A01G442300 chr6D 93.617 47 3 0 3062 3108 48673933 48673979 4.210000e-08 71.3
52 TraesCS5A01G442300 chr6D 92.157 51 3 1 3059 3108 72227087 72227037 4.210000e-08 71.3
53 TraesCS5A01G442300 chr6D 95.455 44 2 0 3065 3108 105817647 105817604 4.210000e-08 71.3
54 TraesCS5A01G442300 chr6D 92.157 51 3 1 3059 3108 113507407 113507357 4.210000e-08 71.3
55 TraesCS5A01G442300 chr6D 86.154 65 4 4 3044 3108 343594318 343594377 1.960000e-06 65.8
56 TraesCS5A01G442300 chr1D 94.643 56 2 1 5681 5735 245773216 245773271 1.500000e-12 86.1
57 TraesCS5A01G442300 chr1D 92.982 57 2 2 3053 3108 399822460 399822405 1.940000e-11 82.4
58 TraesCS5A01G442300 chr1D 95.745 47 2 0 3062 3108 127930367 127930321 9.040000e-10 76.8
59 TraesCS5A01G442300 chr1D 92.157 51 3 1 3058 3108 183030075 183030026 4.210000e-08 71.3
60 TraesCS5A01G442300 chr1D 86.154 65 6 2 3047 3108 483954532 483954596 5.440000e-07 67.6
61 TraesCS5A01G442300 chr1B 91.803 61 3 2 5681 5740 41091081 41091022 5.400000e-12 84.2
62 TraesCS5A01G442300 chr3B 90.476 63 4 2 5681 5742 765667644 765667705 1.940000e-11 82.4
63 TraesCS5A01G442300 chr3B 91.379 58 4 1 3052 3108 185729454 185729397 2.510000e-10 78.7
64 TraesCS5A01G442300 chr3B 89.062 64 5 2 3046 3108 680720852 680720790 2.510000e-10 78.7
65 TraesCS5A01G442300 chrUn 86.667 75 7 3 6355 6428 307259612 307259684 6.990000e-11 80.5
66 TraesCS5A01G442300 chrUn 92.593 54 3 1 3055 3108 126360212 126360160 9.040000e-10 76.8
67 TraesCS5A01G442300 chrUn 88.710 62 5 2 3049 3108 70285827 70285888 3.250000e-09 75.0
68 TraesCS5A01G442300 chrUn 87.692 65 4 3 3045 3108 235689526 235689587 1.170000e-08 73.1
69 TraesCS5A01G442300 chrUn 87.692 65 4 3 3045 3108 248749744 248749805 1.170000e-08 73.1
70 TraesCS5A01G442300 chrUn 88.136 59 7 0 3050 3108 340618176 340618234 4.210000e-08 71.3
71 TraesCS5A01G442300 chr4D 91.379 58 3 2 3051 3108 417350056 417350111 2.510000e-10 78.7
72 TraesCS5A01G442300 chr4D 95.833 48 2 0 3061 3108 484346422 484346375 2.510000e-10 78.7
73 TraesCS5A01G442300 chr4D 92.453 53 3 1 3059 3110 346123423 346123371 3.250000e-09 75.0
74 TraesCS5A01G442300 chr4D 92.157 51 4 0 3058 3108 47533166 47533116 1.170000e-08 73.1
75 TraesCS5A01G442300 chr4D 89.655 58 4 1 3051 3108 314081007 314081062 1.170000e-08 73.1
76 TraesCS5A01G442300 chr4B 91.071 56 5 0 3053 3108 266080710 266080655 9.040000e-10 76.8
77 TraesCS5A01G442300 chr7B 88.710 62 5 2 3048 3108 3704901 3704961 3.250000e-09 75.0
78 TraesCS5A01G442300 chr7B 86.765 68 6 3 3044 3108 440794953 440795020 1.170000e-08 73.1
79 TraesCS5A01G442300 chr7D 89.655 58 4 2 3052 3108 188573997 188574053 1.170000e-08 73.1
80 TraesCS5A01G442300 chr7D 83.133 83 9 4 3026 3108 153584337 153584260 4.210000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G442300 chr5A 622772796 622781197 8401 False 15516.000000 15516 100.000000 1 8402 1 chr5A.!!$F3 8401
1 TraesCS5A01G442300 chr5B 617824180 617832714 8534 False 6000.000000 8118 92.432500 1 8396 2 chr5B.!!$F2 8395
2 TraesCS5A01G442300 chr5D 498493213 498500460 7247 False 1204.833333 3142 87.499833 1 7541 6 chr5D.!!$F3 7540
3 TraesCS5A01G442300 chr5D 65000735 65002452 1717 False 367.333333 643 88.466000 3672 5407 3 chr5D.!!$F2 1735
4 TraesCS5A01G442300 chr5D 498548780 498554954 6174 False 228.300000 451 94.400250 6820 8396 4 chr5D.!!$F4 1576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 807 0.179045 GGGAGACACGGATGGGATTG 60.179 60.000 0.00 0.0 0.00 2.67 F
1388 1459 0.028637 GGCGCTAATCTTGCTTGCTC 59.971 55.000 7.64 0.0 0.00 4.26 F
1541 1614 0.036765 TGCTTGCGAGGGTACGATTT 60.037 50.000 2.37 0.0 35.09 2.17 F
1600 1680 0.378257 TGGATCGCTTACCGTCGTAC 59.622 55.000 0.00 0.0 38.35 3.67 F
1831 1924 0.844660 GTTTATGTCCCCTCCCCTCC 59.155 60.000 0.00 0.0 0.00 4.30 F
1877 1970 1.367471 GGTTGCCCTCAAGCCAAAC 59.633 57.895 0.00 0.0 43.01 2.93 F
3109 3251 1.339929 CAAACAAGTTGGGGTAGGCAC 59.660 52.381 7.96 0.0 33.18 5.01 F
4402 4760 0.320160 GCCTTGCTTTTCTTGCCCAG 60.320 55.000 0.00 0.0 0.00 4.45 F
4960 5337 1.471684 GTCACCGGTAGACAGATCGTT 59.528 52.381 23.72 0.0 36.06 3.85 F
6124 6799 0.466922 AGGCTGCAGTATCCATTGCC 60.467 55.000 16.64 7.7 39.54 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1943 2036 0.032615 AGCCAACAACCCTTGGTTCA 60.033 50.000 0.0 0.0 43.05 3.18 R
2322 2423 0.738389 ACACAGGAACAAGGTTTGCG 59.262 50.000 0.0 0.0 0.00 4.85 R
2694 2816 1.269257 GGGTCAGTTTGCAGCTTTCAC 60.269 52.381 0.0 0.0 0.00 3.18 R
3063 3190 2.445682 AAGGCCCTGTTGTTGTTGTA 57.554 45.000 0.0 0.0 0.00 2.41 R
3077 3219 2.594131 ACTTGTTTGGGACTAAAGGCC 58.406 47.619 0.0 0.0 0.00 5.19 R
3545 3712 4.826274 TCTCCACAGAAACTATGGGAAG 57.174 45.455 0.0 0.0 34.03 3.46 R
4419 4777 1.349357 GCCAAAGAGGACTGAGAAGGT 59.651 52.381 0.0 0.0 41.22 3.50 R
5723 6395 0.037326 CAGTTTGCTACTCCCTGCGA 60.037 55.000 0.0 0.0 33.85 5.10 R
6556 7231 0.535335 GCAACGTGATACTCCCTCCA 59.465 55.000 0.0 0.0 0.00 3.86 R
7587 10161 0.034059 CAGGAGTCGACAAAGTGGCT 59.966 55.000 19.5 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 2.400399 CTGCAGCAAGAAACACATTGG 58.600 47.619 0.00 0.00 0.00 3.16
112 113 4.439974 GCAAGAAACACATTGGTCAGAACA 60.440 41.667 0.00 0.00 0.00 3.18
117 118 1.739466 CACATTGGTCAGAACATCCCG 59.261 52.381 0.00 0.00 0.00 5.14
151 155 5.459107 AGAACGCAATTCAGCTAATAGTACG 59.541 40.000 0.00 0.00 40.09 3.67
152 156 3.489785 ACGCAATTCAGCTAATAGTACGC 59.510 43.478 0.00 0.00 0.00 4.42
168 172 3.673484 GCCAGCAAGAAAGCGGCA 61.673 61.111 1.45 0.00 46.23 5.69
171 175 2.203337 AGCAAGAAAGCGGCACCA 60.203 55.556 1.45 0.00 40.15 4.17
172 176 2.256461 GCAAGAAAGCGGCACCAG 59.744 61.111 1.45 0.00 0.00 4.00
279 293 4.320641 GCCGCCTACAACAATTAAAAGACA 60.321 41.667 0.00 0.00 0.00 3.41
280 294 5.151389 CCGCCTACAACAATTAAAAGACAC 58.849 41.667 0.00 0.00 0.00 3.67
281 295 5.278071 CCGCCTACAACAATTAAAAGACACA 60.278 40.000 0.00 0.00 0.00 3.72
370 407 2.995939 TGCATCAGAAAAGTAGCACGAG 59.004 45.455 0.00 0.00 0.00 4.18
409 447 5.303971 CATCACACCTTGTTCTTCTTCTCT 58.696 41.667 0.00 0.00 0.00 3.10
512 550 0.674895 ACAATCAAGAGCCGGAGCAC 60.675 55.000 5.05 0.00 43.56 4.40
562 606 2.278336 CGCGCGAAACGGAGGATA 60.278 61.111 28.94 0.00 43.93 2.59
583 627 3.828875 ATAAGAAGAAGCGAGGAAGGG 57.171 47.619 0.00 0.00 0.00 3.95
601 645 2.095252 GGGCGCACTTCTTCGAGAC 61.095 63.158 10.83 0.00 0.00 3.36
614 658 3.213402 GAGACCCTCGGCTCCTCG 61.213 72.222 0.00 0.00 0.00 4.63
737 794 4.862823 CGAGGGGGAGGGGGAGAC 62.863 77.778 0.00 0.00 0.00 3.36
739 796 4.026357 AGGGGGAGGGGGAGACAC 62.026 72.222 0.00 0.00 0.00 3.67
750 807 0.179045 GGGAGACACGGATGGGATTG 60.179 60.000 0.00 0.00 0.00 2.67
756 813 2.367202 ACGGATGGGATTGCGGAGT 61.367 57.895 0.00 0.00 34.45 3.85
823 880 0.251165 TAGGGTTGTTGCTTGGCTCC 60.251 55.000 0.00 0.00 0.00 4.70
829 886 4.648626 TTGCTTGGCTCCTGCGCT 62.649 61.111 9.73 0.00 40.82 5.92
876 933 1.003331 TGGTGCGCGTAAGTTTTTCTG 60.003 47.619 8.43 0.00 41.68 3.02
878 935 2.295696 GTGCGCGTAAGTTTTTCTGAC 58.704 47.619 8.43 0.00 41.68 3.51
929 986 0.794981 CGTTCCGTCGCTTCTCTCTG 60.795 60.000 0.00 0.00 0.00 3.35
938 998 2.028930 TCGCTTCTCTCTGTTTTCCTCC 60.029 50.000 0.00 0.00 0.00 4.30
948 1008 0.895559 GTTTTCCTCCTGCTGTGGGG 60.896 60.000 0.00 0.00 0.00 4.96
949 1009 1.360393 TTTTCCTCCTGCTGTGGGGT 61.360 55.000 0.00 0.00 0.00 4.95
950 1010 2.067932 TTTCCTCCTGCTGTGGGGTG 62.068 60.000 0.00 0.00 0.00 4.61
951 1011 4.039092 CCTCCTGCTGTGGGGTGG 62.039 72.222 0.00 0.00 0.00 4.61
952 1012 4.039092 CTCCTGCTGTGGGGTGGG 62.039 72.222 0.00 0.00 0.00 4.61
1177 1243 3.005261 TGTTGTTTCGATGTTGGAATGGG 59.995 43.478 0.00 0.00 0.00 4.00
1178 1244 1.543802 TGTTTCGATGTTGGAATGGGC 59.456 47.619 0.00 0.00 0.00 5.36
1190 1256 0.873054 GAATGGGCTGCGATGATGAG 59.127 55.000 0.00 0.00 0.00 2.90
1191 1257 1.170919 AATGGGCTGCGATGATGAGC 61.171 55.000 0.00 0.00 0.00 4.26
1192 1258 2.053259 ATGGGCTGCGATGATGAGCT 62.053 55.000 0.00 0.00 33.03 4.09
1313 1379 4.691359 ACCGACGCCCAGGTAGGT 62.691 66.667 0.00 0.00 40.52 3.08
1314 1380 3.834799 CCGACGCCCAGGTAGGTC 61.835 72.222 0.00 0.00 34.66 3.85
1316 1382 3.834799 GACGCCCAGGTAGGTCGG 61.835 72.222 0.00 0.00 34.66 4.79
1317 1383 4.371417 ACGCCCAGGTAGGTCGGA 62.371 66.667 0.00 0.00 34.66 4.55
1322 1388 0.032813 CCCAGGTAGGTCGGAGGTTA 60.033 60.000 0.00 0.00 34.66 2.85
1323 1389 1.620524 CCCAGGTAGGTCGGAGGTTAA 60.621 57.143 0.00 0.00 34.66 2.01
1324 1390 2.395619 CCAGGTAGGTCGGAGGTTAAT 58.604 52.381 0.00 0.00 0.00 1.40
1325 1391 2.770232 CCAGGTAGGTCGGAGGTTAATT 59.230 50.000 0.00 0.00 0.00 1.40
1326 1392 3.199289 CCAGGTAGGTCGGAGGTTAATTT 59.801 47.826 0.00 0.00 0.00 1.82
1327 1393 4.189231 CAGGTAGGTCGGAGGTTAATTTG 58.811 47.826 0.00 0.00 0.00 2.32
1328 1394 3.199289 AGGTAGGTCGGAGGTTAATTTGG 59.801 47.826 0.00 0.00 0.00 3.28
1329 1395 2.124277 AGGTCGGAGGTTAATTTGGC 57.876 50.000 0.00 0.00 0.00 4.52
1359 1428 3.558099 CTGACTCGAGTGGTGCGCA 62.558 63.158 25.58 5.66 0.00 6.09
1371 1440 3.910490 TGCGCAGGTTTGGTTGGC 61.910 61.111 5.66 0.00 0.00 4.52
1388 1459 0.028637 GGCGCTAATCTTGCTTGCTC 59.971 55.000 7.64 0.00 0.00 4.26
1395 1466 4.393062 GCTAATCTTGCTTGCTCTGTGTTA 59.607 41.667 0.00 0.00 0.00 2.41
1401 1472 2.878406 TGCTTGCTCTGTGTTACCTTTC 59.122 45.455 0.00 0.00 0.00 2.62
1441 1512 1.144936 GATGGGGAAGACGCTCCTG 59.855 63.158 0.00 0.00 35.63 3.86
1474 1545 3.936203 AAGGGCGACGTGCTTCCA 61.936 61.111 0.00 0.00 45.43 3.53
1497 1568 1.027357 CACAAGGTGAGCTTGCTTGT 58.973 50.000 22.83 2.50 38.58 3.16
1498 1569 2.158827 TCACAAGGTGAGCTTGCTTGTA 60.159 45.455 22.83 2.92 37.67 2.41
1522 1595 0.695347 CCCCTCTTCTCAGTTTGGCT 59.305 55.000 0.00 0.00 0.00 4.75
1523 1596 1.612726 CCCCTCTTCTCAGTTTGGCTG 60.613 57.143 0.00 0.00 46.34 4.85
1524 1597 1.163554 CCTCTTCTCAGTTTGGCTGC 58.836 55.000 0.00 0.00 44.66 5.25
1525 1598 1.271271 CCTCTTCTCAGTTTGGCTGCT 60.271 52.381 0.00 0.00 44.66 4.24
1528 1601 0.670162 TTCTCAGTTTGGCTGCTTGC 59.330 50.000 0.00 0.00 44.66 4.01
1529 1602 1.081641 CTCAGTTTGGCTGCTTGCG 60.082 57.895 0.00 0.00 44.66 4.85
1531 1604 1.081641 CAGTTTGGCTGCTTGCGAG 60.082 57.895 0.00 0.00 44.05 5.03
1532 1605 2.256461 GTTTGGCTGCTTGCGAGG 59.744 61.111 2.37 0.00 44.05 4.63
1533 1606 2.985282 TTTGGCTGCTTGCGAGGG 60.985 61.111 2.37 0.00 44.05 4.30
1534 1607 3.790416 TTTGGCTGCTTGCGAGGGT 62.790 57.895 2.37 0.00 44.05 4.34
1536 1609 2.820037 GGCTGCTTGCGAGGGTAC 60.820 66.667 2.37 0.00 44.05 3.34
1537 1610 3.188786 GCTGCTTGCGAGGGTACG 61.189 66.667 2.37 0.00 0.00 3.67
1539 1612 1.141881 CTGCTTGCGAGGGTACGAT 59.858 57.895 2.37 0.00 35.09 3.73
1540 1613 0.460284 CTGCTTGCGAGGGTACGATT 60.460 55.000 2.37 0.00 35.09 3.34
1541 1614 0.036765 TGCTTGCGAGGGTACGATTT 60.037 50.000 2.37 0.00 35.09 2.17
1542 1615 0.651031 GCTTGCGAGGGTACGATTTC 59.349 55.000 2.37 0.00 35.09 2.17
1543 1616 1.739371 GCTTGCGAGGGTACGATTTCT 60.739 52.381 2.37 0.00 35.09 2.52
1544 1617 1.927174 CTTGCGAGGGTACGATTTCTG 59.073 52.381 0.00 0.00 35.09 3.02
1547 1620 2.004583 CGAGGGTACGATTTCTGCAA 57.995 50.000 0.00 0.00 35.09 4.08
1558 1638 4.245660 CGATTTCTGCAACTCTGGTTAGA 58.754 43.478 0.00 0.00 33.88 2.10
1561 1641 5.751243 TTTCTGCAACTCTGGTTAGAAAC 57.249 39.130 0.00 0.00 36.20 2.78
1562 1642 4.689612 TCTGCAACTCTGGTTAGAAACT 57.310 40.909 0.00 0.00 33.88 2.66
1563 1643 5.801531 TCTGCAACTCTGGTTAGAAACTA 57.198 39.130 0.00 0.00 33.88 2.24
1566 1646 6.650807 TCTGCAACTCTGGTTAGAAACTATTG 59.349 38.462 0.00 0.00 33.88 1.90
1567 1647 5.181245 TGCAACTCTGGTTAGAAACTATTGC 59.819 40.000 0.00 0.00 39.26 3.56
1570 1650 6.360370 ACTCTGGTTAGAAACTATTGCTGA 57.640 37.500 0.00 0.00 31.21 4.26
1587 1667 2.096496 GCTGAAAATGTGGTCTGGATCG 59.904 50.000 0.00 0.00 0.00 3.69
1591 1671 3.627395 AAATGTGGTCTGGATCGCTTA 57.373 42.857 0.00 0.00 0.00 3.09
1592 1672 2.604046 ATGTGGTCTGGATCGCTTAC 57.396 50.000 0.00 0.00 0.00 2.34
1595 1675 0.968901 TGGTCTGGATCGCTTACCGT 60.969 55.000 0.00 0.00 38.35 4.83
1597 1677 0.591741 GTCTGGATCGCTTACCGTCG 60.592 60.000 0.00 0.00 38.35 5.12
1600 1680 0.378257 TGGATCGCTTACCGTCGTAC 59.622 55.000 0.00 0.00 38.35 3.67
1601 1681 0.378257 GGATCGCTTACCGTCGTACA 59.622 55.000 0.00 0.00 38.35 2.90
1602 1682 1.002033 GGATCGCTTACCGTCGTACAT 60.002 52.381 0.00 0.00 38.35 2.29
1603 1683 2.224079 GGATCGCTTACCGTCGTACATA 59.776 50.000 0.00 0.00 38.35 2.29
1608 1697 2.724690 GCTTACCGTCGTACATATGCTG 59.275 50.000 1.58 0.00 0.00 4.41
1611 1700 0.852777 CCGTCGTACATATGCTGTGC 59.147 55.000 1.58 0.00 38.92 4.57
1616 1705 4.518217 GTCGTACATATGCTGTGCAAATC 58.482 43.478 1.58 0.00 43.62 2.17
1628 1717 5.234972 TGCTGTGCAAATCGTCTCTTATATG 59.765 40.000 0.00 0.00 34.76 1.78
1631 1720 4.752101 GTGCAAATCGTCTCTTATATGCCT 59.248 41.667 0.00 0.00 0.00 4.75
1668 1759 9.355916 ACTTGAGTAGTGTAATCTATCTATGCA 57.644 33.333 0.00 0.00 35.19 3.96
1673 1764 8.465999 AGTAGTGTAATCTATCTATGCATGAGC 58.534 37.037 10.16 0.00 42.57 4.26
1697 1788 7.682593 CATGCAATGTTATTAATCGCTGAAA 57.317 32.000 0.00 0.00 40.20 2.69
1698 1789 8.289440 CATGCAATGTTATTAATCGCTGAAAT 57.711 30.769 0.00 0.00 40.20 2.17
1699 1790 7.682593 TGCAATGTTATTAATCGCTGAAATG 57.317 32.000 0.00 0.00 0.00 2.32
1701 1792 7.431960 TGCAATGTTATTAATCGCTGAAATGTC 59.568 33.333 0.00 0.00 0.00 3.06
1702 1793 7.645340 GCAATGTTATTAATCGCTGAAATGTCT 59.355 33.333 0.00 0.00 0.00 3.41
1713 1804 8.668510 ATCGCTGAAATGTCTAATCAAATACT 57.331 30.769 0.00 0.00 0.00 2.12
1714 1805 8.492673 TCGCTGAAATGTCTAATCAAATACTT 57.507 30.769 0.00 0.00 0.00 2.24
1715 1806 8.390354 TCGCTGAAATGTCTAATCAAATACTTG 58.610 33.333 0.00 0.00 0.00 3.16
1716 1807 7.164826 CGCTGAAATGTCTAATCAAATACTTGC 59.835 37.037 0.00 0.00 32.14 4.01
1742 1833 5.821204 AGTTGCACTTGTCAAGTTCATTAC 58.179 37.500 17.10 13.45 40.46 1.89
1753 1845 6.873605 TGTCAAGTTCATTACGAATCACATCT 59.126 34.615 0.00 0.00 35.63 2.90
1796 1889 3.251972 GCACTCTGTTTCTTTTGCTAGCT 59.748 43.478 17.23 0.00 0.00 3.32
1814 1907 1.268899 GCTGCACTGATCTTGCTTGTT 59.731 47.619 17.40 0.00 40.86 2.83
1816 1909 3.058016 GCTGCACTGATCTTGCTTGTTTA 60.058 43.478 17.40 0.21 40.86 2.01
1821 1914 5.634896 CACTGATCTTGCTTGTTTATGTCC 58.365 41.667 0.00 0.00 0.00 4.02
1824 1917 3.806949 TCTTGCTTGTTTATGTCCCCT 57.193 42.857 0.00 0.00 0.00 4.79
1831 1924 0.844660 GTTTATGTCCCCTCCCCTCC 59.155 60.000 0.00 0.00 0.00 4.30
1847 1940 1.676014 CCTCCGCTGTTCTAGTTTGGG 60.676 57.143 0.00 0.00 0.00 4.12
1877 1970 1.367471 GGTTGCCCTCAAGCCAAAC 59.633 57.895 0.00 0.00 43.01 2.93
1939 2032 6.910536 AGTTTATCGCTTGAAGGTATCTTG 57.089 37.500 0.00 0.00 32.52 3.02
1943 2036 2.497675 TCGCTTGAAGGTATCTTGCTCT 59.502 45.455 0.00 0.00 32.52 4.09
1944 2037 2.606725 CGCTTGAAGGTATCTTGCTCTG 59.393 50.000 0.00 0.00 32.52 3.35
1946 2039 4.256920 GCTTGAAGGTATCTTGCTCTGAA 58.743 43.478 0.00 0.00 32.52 3.02
1948 2041 4.207891 TGAAGGTATCTTGCTCTGAACC 57.792 45.455 0.00 0.00 32.52 3.62
1983 2076 6.763135 TGGCTATCTAAGTCTTTGCATTGTAG 59.237 38.462 0.00 0.00 0.00 2.74
2137 2230 3.575965 AAAATCCGCATGGTTTCTGTC 57.424 42.857 0.00 0.00 36.30 3.51
2358 2459 5.306937 TCCTGTGTTATTTGGAGAGAACTCA 59.693 40.000 4.64 0.00 44.22 3.41
2400 2501 4.156008 GCCGTGAAGTTCAGTCCATTTAAT 59.844 41.667 5.62 0.00 0.00 1.40
2480 2585 4.096984 GCCTATGTTCCATTTCAGTTCTGG 59.903 45.833 0.00 0.00 0.00 3.86
2481 2586 4.096984 CCTATGTTCCATTTCAGTTCTGGC 59.903 45.833 0.00 0.00 0.00 4.85
2563 2685 9.139734 TGAGAAGTCTAGAACAGTTAGGTTTAA 57.860 33.333 0.00 0.00 0.00 1.52
2857 2982 7.288810 AGCTTTTAGTGAATTGATTGTTGGA 57.711 32.000 0.00 0.00 0.00 3.53
3077 3219 6.613233 TGTTTAACACTACAACAACAACAGG 58.387 36.000 0.00 0.00 0.00 4.00
3109 3251 1.339929 CAAACAAGTTGGGGTAGGCAC 59.660 52.381 7.96 0.00 33.18 5.01
3130 3272 6.472808 GGCACGTTTGTTTAACACTAAATCAA 59.527 34.615 0.00 0.00 36.50 2.57
3260 3403 9.233232 GTTATAAATTTACAACTGTAGGCATGC 57.767 33.333 9.90 9.90 0.00 4.06
3564 3731 5.250543 TCATTCTTCCCATAGTTTCTGTGGA 59.749 40.000 12.83 0.00 43.99 4.02
3565 3732 4.826274 TCTTCCCATAGTTTCTGTGGAG 57.174 45.455 12.83 4.98 43.99 3.86
3766 3948 6.453926 GTGAAACCCCTGTTTAAGTTGTAA 57.546 37.500 0.00 0.00 44.57 2.41
3852 4046 9.199184 CTTTCGATCACATTTAACTTCAATACG 57.801 33.333 0.00 0.00 0.00 3.06
3861 4055 7.551262 ACATTTAACTTCAATACGCATCCACTA 59.449 33.333 0.00 0.00 0.00 2.74
3890 4084 1.202891 AGTGTACCCACCTTTGCCTTC 60.203 52.381 0.00 0.00 42.88 3.46
4160 4517 4.700213 CCTTAATGTGTCCCTGTTAACCTG 59.300 45.833 2.48 0.00 0.00 4.00
4258 4615 5.124776 CGCAAGGAAATGAAGGTAACCATTA 59.875 40.000 0.00 0.00 33.13 1.90
4393 4751 1.680735 TCATTCGTGTGCCTTGCTTTT 59.319 42.857 0.00 0.00 0.00 2.27
4402 4760 0.320160 GCCTTGCTTTTCTTGCCCAG 60.320 55.000 0.00 0.00 0.00 4.45
4419 4777 5.090845 TGCCCAGTCTATTAGTATGGCATA 58.909 41.667 2.32 2.32 42.32 3.14
4443 4801 1.620819 TCTCAGTCCTCTTTGGCTGAC 59.379 52.381 0.00 0.00 41.01 3.51
4808 5168 8.712228 ACTTGTCTTCCAAAAGAGGATAAATT 57.288 30.769 0.00 0.00 42.14 1.82
4869 5246 8.425577 TGGTTTTTGTATTGGTGTAAATTGTG 57.574 30.769 0.00 0.00 0.00 3.33
4888 5265 5.476091 TGTGGCACATCGGTATGAATATA 57.524 39.130 17.96 0.00 44.52 0.86
4960 5337 1.471684 GTCACCGGTAGACAGATCGTT 59.528 52.381 23.72 0.00 36.06 3.85
5037 5648 5.134202 AGTTTCGGGATTTTCAAATGGTC 57.866 39.130 0.00 0.00 0.00 4.02
5172 5790 7.066163 TGTGTTATGGAGCTTCTCATTTATGTG 59.934 37.037 0.00 0.00 31.08 3.21
5206 5824 7.834881 TCTATATTCTTGTCGTATTCAGGGT 57.165 36.000 0.00 0.00 0.00 4.34
5311 5929 3.069729 AGACACTCTTTGAACGCCTTACT 59.930 43.478 0.00 0.00 0.00 2.24
5520 6139 4.445453 TGTATTCTCAGATCAAAGCGCAT 58.555 39.130 11.47 0.00 0.00 4.73
5670 6289 7.308589 GCTTGTTGGAGTACTCACACATATTTT 60.309 37.037 23.91 0.00 0.00 1.82
5695 6367 6.206829 TCGTCCCAACTAGATACATCTGTATG 59.793 42.308 7.55 0.00 40.99 2.39
5723 6395 7.725844 AGACAAATCTAAGACAAGAATTTGGGT 59.274 33.333 9.98 0.00 34.16 4.51
5725 6397 6.743575 AATCTAAGACAAGAATTTGGGTCG 57.256 37.500 0.00 0.00 38.66 4.79
6058 6733 7.506114 TGTCTGAAGTACTTTTTAGGTGTGAT 58.494 34.615 10.02 0.00 0.00 3.06
6124 6799 0.466922 AGGCTGCAGTATCCATTGCC 60.467 55.000 16.64 7.70 39.54 4.52
6136 6811 1.193323 CCATTGCCCATGCCAAGTTA 58.807 50.000 3.87 0.00 36.33 2.24
6387 7062 6.606395 TCCCTCTGTTCCTAAATACTCACTAC 59.394 42.308 0.00 0.00 0.00 2.73
6398 7073 8.433126 CCTAAATACTCACTACTGTCAAAAACG 58.567 37.037 0.00 0.00 0.00 3.60
6415 7090 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
6463 7138 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
6464 7139 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
6570 7245 5.888982 TTTAGGAATGGAGGGAGTATCAC 57.111 43.478 0.00 0.00 40.51 3.06
6673 7351 9.559732 TTCTTCTCTTTCTGTTACATTTCATCA 57.440 29.630 0.00 0.00 0.00 3.07
6891 7569 5.048434 CCAAAGAAAGAGGTAAGCTTCCTTG 60.048 44.000 15.74 9.73 35.20 3.61
6892 7570 4.984146 AGAAAGAGGTAAGCTTCCTTGT 57.016 40.909 15.74 6.83 35.20 3.16
6924 9431 9.771534 CTTCCTAGGTTGAAAATTATCCTCTAG 57.228 37.037 9.08 0.00 0.00 2.43
6925 9432 8.263854 TCCTAGGTTGAAAATTATCCTCTAGG 57.736 38.462 9.08 0.00 0.00 3.02
6951 9487 7.677511 GCATTGATGTTGATTTTGCATTGCATA 60.678 33.333 12.95 4.75 38.76 3.14
6986 9535 2.045885 AGGAGAGGGGAAGTTCCATACA 59.954 50.000 23.33 0.00 38.64 2.29
7040 9589 8.048534 AGTGAGCATTTTATATATGGCATGAC 57.951 34.615 10.98 0.00 0.00 3.06
7221 9777 9.700831 ACTAAAACCTATATTCATTTGCTTCCT 57.299 29.630 0.00 0.00 0.00 3.36
7377 9933 0.608582 AGAACGGCGAGTACCTGAGT 60.609 55.000 16.62 0.00 0.00 3.41
7474 10030 1.265905 GTACCGGAAACAAGCAACTGG 59.734 52.381 9.46 0.00 35.21 4.00
7505 10062 0.102300 GTGGACAGGTTGGTGCAAAC 59.898 55.000 0.00 0.00 40.90 2.93
7512 10069 4.796408 TTGGTGCAAACCCCAACT 57.204 50.000 2.51 0.00 35.84 3.16
7541 10100 6.038161 GCATACATTTGCCACAGAATACTACA 59.962 38.462 0.00 0.00 36.60 2.74
7572 10146 1.524848 TTGTTCACCGTGTTGTGTGT 58.475 45.000 0.00 0.00 37.51 3.72
7573 10147 0.799393 TGTTCACCGTGTTGTGTGTG 59.201 50.000 0.00 0.00 37.51 3.82
7585 10159 4.992319 GTGTTGTGTGTGGTATAGCAGTTA 59.008 41.667 4.51 0.00 0.00 2.24
7587 10161 6.814644 GTGTTGTGTGTGGTATAGCAGTTATA 59.185 38.462 4.51 0.00 0.00 0.98
7627 10203 2.423538 GCTCTTGGTGTGAGTTTGTTGT 59.576 45.455 0.00 0.00 34.30 3.32
7729 10311 5.003160 TCTGAATGCGAAGAAAATCTCCAA 58.997 37.500 0.00 0.00 0.00 3.53
7761 10343 6.017400 CCTTTGGGCAGCAGTAATATATTG 57.983 41.667 8.28 0.00 0.00 1.90
7762 10344 5.769662 CCTTTGGGCAGCAGTAATATATTGA 59.230 40.000 8.28 0.00 0.00 2.57
7763 10345 6.294176 CCTTTGGGCAGCAGTAATATATTGAC 60.294 42.308 8.28 3.21 0.00 3.18
7764 10346 5.303259 TGGGCAGCAGTAATATATTGACA 57.697 39.130 8.28 0.00 0.00 3.58
7765 10347 5.879763 TGGGCAGCAGTAATATATTGACAT 58.120 37.500 8.28 0.00 0.00 3.06
7766 10348 5.706833 TGGGCAGCAGTAATATATTGACATG 59.293 40.000 8.28 0.00 0.00 3.21
7768 10350 5.707298 GGCAGCAGTAATATATTGACATGGT 59.293 40.000 8.28 4.52 0.00 3.55
7769 10351 6.878923 GGCAGCAGTAATATATTGACATGGTA 59.121 38.462 8.28 0.00 0.00 3.25
7770 10352 7.390440 GGCAGCAGTAATATATTGACATGGTAA 59.610 37.037 8.28 0.00 0.00 2.85
7799 10381 7.147312 TCAAATGTTCAAATGATTCTCACACC 58.853 34.615 0.00 0.00 0.00 4.16
7800 10382 6.653526 AATGTTCAAATGATTCTCACACCA 57.346 33.333 0.00 0.00 0.00 4.17
7858 10442 2.408704 CGTGCTTCGACAAGAAAGGTAG 59.591 50.000 0.00 0.00 42.86 3.18
7859 10443 2.737252 GTGCTTCGACAAGAAAGGTAGG 59.263 50.000 0.00 0.00 38.57 3.18
7919 10503 4.469227 AGCACTGGACTAGAAGAATCACAT 59.531 41.667 0.00 0.00 0.00 3.21
7958 10542 7.866898 CACCACAATGAACAAGATGAACAAATA 59.133 33.333 0.00 0.00 0.00 1.40
8003 10587 5.983720 GCAATACATCAACCATCGTAGTACT 59.016 40.000 0.00 0.00 0.00 2.73
8004 10588 6.074302 GCAATACATCAACCATCGTAGTACTG 60.074 42.308 5.39 0.00 0.00 2.74
8005 10589 6.710597 ATACATCAACCATCGTAGTACTGT 57.289 37.500 5.39 0.00 0.00 3.55
8107 13939 2.479566 TGCCAGTGAATCTGAAGACC 57.520 50.000 0.00 0.00 46.27 3.85
8113 13945 4.932200 CCAGTGAATCTGAAGACCAAGTAC 59.068 45.833 0.00 0.00 46.27 2.73
8115 13947 5.636965 CAGTGAATCTGAAGACCAAGTACTG 59.363 44.000 0.00 0.00 46.27 2.74
8116 13948 5.305644 AGTGAATCTGAAGACCAAGTACTGT 59.694 40.000 0.00 0.00 0.00 3.55
8117 13949 6.493802 AGTGAATCTGAAGACCAAGTACTGTA 59.506 38.462 0.00 0.00 0.00 2.74
8118 13950 7.179338 AGTGAATCTGAAGACCAAGTACTGTAT 59.821 37.037 0.00 0.00 0.00 2.29
8119 13951 7.819900 GTGAATCTGAAGACCAAGTACTGTATT 59.180 37.037 0.00 0.00 0.00 1.89
8171 14003 7.712204 TTGGTGTCTAGATATGTTACAGTGA 57.288 36.000 0.00 0.00 0.00 3.41
8203 14038 2.724174 GCAATTACCAACACAAACGAGC 59.276 45.455 0.00 0.00 0.00 5.03
8206 14041 3.684103 TTACCAACACAAACGAGCAAG 57.316 42.857 0.00 0.00 0.00 4.01
8207 14042 0.100503 ACCAACACAAACGAGCAAGC 59.899 50.000 0.00 0.00 0.00 4.01
8208 14043 0.100325 CCAACACAAACGAGCAAGCA 59.900 50.000 0.00 0.00 0.00 3.91
8210 14045 1.063912 CAACACAAACGAGCAAGCAGA 59.936 47.619 0.00 0.00 0.00 4.26
8211 14046 0.940126 ACACAAACGAGCAAGCAGAG 59.060 50.000 0.00 0.00 0.00 3.35
8212 14047 0.940126 CACAAACGAGCAAGCAGAGT 59.060 50.000 0.00 0.00 0.00 3.24
8213 14048 0.940126 ACAAACGAGCAAGCAGAGTG 59.060 50.000 0.00 0.00 0.00 3.51
8215 14050 1.599071 CAAACGAGCAAGCAGAGTGAA 59.401 47.619 0.00 0.00 0.00 3.18
8216 14051 1.506493 AACGAGCAAGCAGAGTGAAG 58.494 50.000 0.00 0.00 0.00 3.02
8217 14052 0.390860 ACGAGCAAGCAGAGTGAAGT 59.609 50.000 0.00 0.00 0.00 3.01
8219 14054 2.035961 ACGAGCAAGCAGAGTGAAGTAA 59.964 45.455 0.00 0.00 0.00 2.24
8221 14056 3.658709 GAGCAAGCAGAGTGAAGTAACT 58.341 45.455 0.00 0.00 0.00 2.24
8232 14067 5.252164 AGAGTGAAGTAACTAGGACTCCTCT 59.748 44.000 0.00 12.90 34.61 3.69
8238 14073 5.265989 AGTAACTAGGACTCCTCTTCTTGG 58.734 45.833 0.00 0.00 34.61 3.61
8242 14077 2.252714 AGGACTCCTCTTCTTGGACAC 58.747 52.381 0.00 0.00 0.00 3.67
8259 14094 0.459237 CACGACTCCATCCTGCAGAC 60.459 60.000 17.39 0.00 0.00 3.51
8260 14095 0.613292 ACGACTCCATCCTGCAGACT 60.613 55.000 17.39 0.00 0.00 3.24
8265 14100 2.202987 CATCCTGCAGACTCCGCC 60.203 66.667 17.39 0.00 0.00 6.13
8266 14101 2.364842 ATCCTGCAGACTCCGCCT 60.365 61.111 17.39 0.00 0.00 5.52
8313 14148 0.379669 CCATGAAACCGAGCAGCATC 59.620 55.000 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.139077 CAACCCCTATCCGCATAAGTTC 58.861 50.000 0.00 0.00 0.00 3.01
51 52 0.548682 ACAGGCTCAGGACCCTTGAT 60.549 55.000 0.00 0.00 0.00 2.57
104 105 0.804989 CCTTTGCGGGATGTTCTGAC 59.195 55.000 0.00 0.00 0.00 3.51
117 118 2.438868 ATTGCGTTCTTTCCCTTTGC 57.561 45.000 0.00 0.00 0.00 3.68
151 155 3.673484 TGCCGCTTTCTTGCTGGC 61.673 61.111 12.65 12.65 45.55 4.85
152 156 2.256461 GTGCCGCTTTCTTGCTGG 59.744 61.111 0.00 0.00 0.00 4.85
168 172 5.775701 GGATCCTACTGTATGTCATACTGGT 59.224 44.000 25.14 21.73 38.53 4.00
171 175 7.013220 ACATGGATCCTACTGTATGTCATACT 58.987 38.462 20.91 7.15 36.70 2.12
172 176 7.233389 ACATGGATCCTACTGTATGTCATAC 57.767 40.000 14.23 14.98 36.29 2.39
255 262 4.076394 TCTTTTAATTGTTGTAGGCGGCT 58.924 39.130 18.33 18.33 0.00 5.52
279 293 5.401531 ACACTAATATCTCCGTGTGTTGT 57.598 39.130 0.00 0.00 38.99 3.32
280 294 6.367695 TGAAACACTAATATCTCCGTGTGTTG 59.632 38.462 9.54 0.00 44.45 3.33
281 295 6.460781 TGAAACACTAATATCTCCGTGTGTT 58.539 36.000 0.00 0.00 46.28 3.32
409 447 4.082523 CGCCGGCTCAAGGAGGAA 62.083 66.667 26.68 0.00 0.00 3.36
512 550 2.283351 GCTCTTGCTTGCTTGTTTGTTG 59.717 45.455 0.00 0.00 36.03 3.33
562 606 3.118223 CCCCTTCCTCGCTTCTTCTTATT 60.118 47.826 0.00 0.00 0.00 1.40
583 627 2.095252 GTCTCGAAGAAGTGCGCCC 61.095 63.158 4.18 0.00 34.09 6.13
705 758 1.810030 CTCGGCGAAACCCTAGCAC 60.810 63.158 12.13 0.00 33.26 4.40
734 791 1.153369 CGCAATCCCATCCGTGTCT 60.153 57.895 0.00 0.00 0.00 3.41
737 794 1.889105 CTCCGCAATCCCATCCGTG 60.889 63.158 0.00 0.00 0.00 4.94
739 796 1.889105 CACTCCGCAATCCCATCCG 60.889 63.158 0.00 0.00 0.00 4.18
750 807 2.866028 CTTTGCTCTGCACTCCGC 59.134 61.111 0.00 0.00 38.71 5.54
756 813 2.359107 CCTCCGCTTTGCTCTGCA 60.359 61.111 0.00 0.00 36.47 4.41
788 845 0.468648 CCTAGCTAAAACCCCCTCGG 59.531 60.000 0.00 0.00 37.81 4.63
913 970 0.959553 AAACAGAGAGAAGCGACGGA 59.040 50.000 0.00 0.00 0.00 4.69
916 973 2.990514 GAGGAAAACAGAGAGAAGCGAC 59.009 50.000 0.00 0.00 0.00 5.19
929 986 0.895559 CCCCACAGCAGGAGGAAAAC 60.896 60.000 0.00 0.00 0.00 2.43
938 998 4.351054 GGTCCCACCCCACAGCAG 62.351 72.222 0.00 0.00 30.04 4.24
965 1025 0.178068 GATGACTTCGCCTAAGCCCA 59.822 55.000 0.00 0.00 38.93 5.36
966 1026 0.533085 GGATGACTTCGCCTAAGCCC 60.533 60.000 0.00 0.00 38.93 5.19
967 1027 0.876342 CGGATGACTTCGCCTAAGCC 60.876 60.000 0.00 0.00 38.93 4.35
968 1028 0.102481 TCGGATGACTTCGCCTAAGC 59.898 55.000 0.00 0.00 38.93 3.09
969 1029 1.269309 CCTCGGATGACTTCGCCTAAG 60.269 57.143 0.00 0.00 41.33 2.18
970 1030 0.744874 CCTCGGATGACTTCGCCTAA 59.255 55.000 0.00 0.00 0.00 2.69
1155 1221 3.005261 CCCATTCCAACATCGAAACAACA 59.995 43.478 0.00 0.00 0.00 3.33
1177 1243 1.888172 AGCAGCTCATCATCGCAGC 60.888 57.895 0.00 0.00 38.71 5.25
1178 1244 1.935194 CAGCAGCTCATCATCGCAG 59.065 57.895 0.00 0.00 0.00 5.18
1313 1379 1.953311 GCCAGCCAAATTAACCTCCGA 60.953 52.381 0.00 0.00 0.00 4.55
1314 1380 0.455815 GCCAGCCAAATTAACCTCCG 59.544 55.000 0.00 0.00 0.00 4.63
1316 1382 1.751351 GGAGCCAGCCAAATTAACCTC 59.249 52.381 0.00 0.00 0.00 3.85
1317 1383 1.077005 TGGAGCCAGCCAAATTAACCT 59.923 47.619 0.00 0.00 34.31 3.50
1322 1388 0.251073 GCAATGGAGCCAGCCAAATT 59.749 50.000 0.00 0.00 42.16 1.82
1323 1389 0.616679 AGCAATGGAGCCAGCCAAAT 60.617 50.000 0.00 0.00 42.16 2.32
1324 1390 1.228956 AGCAATGGAGCCAGCCAAA 60.229 52.632 0.00 0.00 42.16 3.28
1325 1391 1.980232 CAGCAATGGAGCCAGCCAA 60.980 57.895 0.00 0.00 42.16 4.52
1326 1392 2.361992 CAGCAATGGAGCCAGCCA 60.362 61.111 0.00 0.00 43.23 4.75
1327 1393 2.044650 TCAGCAATGGAGCCAGCC 60.045 61.111 0.00 0.00 34.23 4.85
1328 1394 1.375098 GAGTCAGCAATGGAGCCAGC 61.375 60.000 0.00 0.00 34.23 4.85
1329 1395 1.088340 CGAGTCAGCAATGGAGCCAG 61.088 60.000 0.00 0.00 34.23 4.85
1359 1428 1.173913 GATTAGCGCCAACCAAACCT 58.826 50.000 2.29 0.00 0.00 3.50
1371 1440 2.005451 ACAGAGCAAGCAAGATTAGCG 58.995 47.619 0.00 0.00 37.01 4.26
1388 1459 2.249844 ACCCACGAAAGGTAACACAG 57.750 50.000 0.00 0.00 35.24 3.66
1395 1466 3.087781 GTCTACTCTACCCACGAAAGGT 58.912 50.000 0.00 0.00 41.64 3.50
1401 1472 1.099879 CCCCGTCTACTCTACCCACG 61.100 65.000 0.00 0.00 0.00 4.94
1441 1512 0.895559 CCTTGTTGGGCTGGAACTCC 60.896 60.000 0.00 0.00 0.00 3.85
1492 1563 3.008049 TGAGAAGAGGGGAAAGTACAAGC 59.992 47.826 0.00 0.00 0.00 4.01
1493 1564 4.284746 ACTGAGAAGAGGGGAAAGTACAAG 59.715 45.833 0.00 0.00 0.00 3.16
1494 1565 4.232091 ACTGAGAAGAGGGGAAAGTACAA 58.768 43.478 0.00 0.00 0.00 2.41
1497 1568 4.041691 CCAAACTGAGAAGAGGGGAAAGTA 59.958 45.833 0.00 0.00 0.00 2.24
1498 1569 3.181439 CCAAACTGAGAAGAGGGGAAAGT 60.181 47.826 0.00 0.00 0.00 2.66
1522 1595 0.036765 AAATCGTACCCTCGCAAGCA 60.037 50.000 0.00 0.00 37.18 3.91
1523 1596 0.651031 GAAATCGTACCCTCGCAAGC 59.349 55.000 0.00 0.00 37.18 4.01
1524 1597 1.927174 CAGAAATCGTACCCTCGCAAG 59.073 52.381 0.00 0.00 0.00 4.01
1525 1598 2.004583 CAGAAATCGTACCCTCGCAA 57.995 50.000 0.00 0.00 0.00 4.85
1528 1601 1.659098 GTTGCAGAAATCGTACCCTCG 59.341 52.381 0.00 0.00 0.00 4.63
1529 1602 2.930682 GAGTTGCAGAAATCGTACCCTC 59.069 50.000 0.00 0.00 0.00 4.30
1531 1604 2.673368 CAGAGTTGCAGAAATCGTACCC 59.327 50.000 0.00 0.00 31.28 3.69
1532 1605 2.673368 CCAGAGTTGCAGAAATCGTACC 59.327 50.000 0.00 0.00 31.28 3.34
1533 1606 3.326747 ACCAGAGTTGCAGAAATCGTAC 58.673 45.455 0.00 0.00 31.28 3.67
1534 1607 3.678056 ACCAGAGTTGCAGAAATCGTA 57.322 42.857 0.00 0.00 31.28 3.43
1536 1609 4.245660 TCTAACCAGAGTTGCAGAAATCG 58.754 43.478 0.00 0.00 36.68 3.34
1537 1610 6.205658 AGTTTCTAACCAGAGTTGCAGAAATC 59.794 38.462 7.00 0.00 40.27 2.17
1539 1612 5.437060 AGTTTCTAACCAGAGTTGCAGAAA 58.563 37.500 0.00 0.00 37.85 2.52
1540 1613 5.036117 AGTTTCTAACCAGAGTTGCAGAA 57.964 39.130 0.00 0.00 36.68 3.02
1541 1614 4.689612 AGTTTCTAACCAGAGTTGCAGA 57.310 40.909 0.00 0.00 36.68 4.26
1542 1615 6.621596 GCAATAGTTTCTAACCAGAGTTGCAG 60.622 42.308 0.00 0.00 38.37 4.41
1543 1616 5.181245 GCAATAGTTTCTAACCAGAGTTGCA 59.819 40.000 0.00 0.00 38.37 4.08
1544 1617 5.412904 AGCAATAGTTTCTAACCAGAGTTGC 59.587 40.000 0.00 0.00 36.68 4.17
1547 1620 6.360370 TCAGCAATAGTTTCTAACCAGAGT 57.640 37.500 0.00 0.00 30.73 3.24
1558 1638 6.449698 CAGACCACATTTTCAGCAATAGTTT 58.550 36.000 0.00 0.00 0.00 2.66
1561 1641 4.701651 TCCAGACCACATTTTCAGCAATAG 59.298 41.667 0.00 0.00 0.00 1.73
1562 1642 4.661222 TCCAGACCACATTTTCAGCAATA 58.339 39.130 0.00 0.00 0.00 1.90
1563 1643 3.499338 TCCAGACCACATTTTCAGCAAT 58.501 40.909 0.00 0.00 0.00 3.56
1566 1646 2.096496 CGATCCAGACCACATTTTCAGC 59.904 50.000 0.00 0.00 0.00 4.26
1567 1647 2.096496 GCGATCCAGACCACATTTTCAG 59.904 50.000 0.00 0.00 0.00 3.02
1570 1650 2.496899 AGCGATCCAGACCACATTTT 57.503 45.000 0.00 0.00 0.00 1.82
1587 1667 2.724690 CAGCATATGTACGACGGTAAGC 59.275 50.000 4.29 0.00 0.00 3.09
1591 1671 1.801395 GCACAGCATATGTACGACGGT 60.801 52.381 4.29 0.00 41.41 4.83
1592 1672 0.852777 GCACAGCATATGTACGACGG 59.147 55.000 4.29 0.00 41.41 4.79
1595 1675 3.245048 CGATTTGCACAGCATATGTACGA 59.755 43.478 4.29 0.00 41.41 3.43
1597 1677 4.271049 AGACGATTTGCACAGCATATGTAC 59.729 41.667 4.29 0.00 41.41 2.90
1600 1680 3.558829 AGAGACGATTTGCACAGCATATG 59.441 43.478 0.00 0.00 38.76 1.78
1601 1681 3.801698 AGAGACGATTTGCACAGCATAT 58.198 40.909 0.00 0.00 38.76 1.78
1602 1682 3.251479 AGAGACGATTTGCACAGCATA 57.749 42.857 0.00 0.00 38.76 3.14
1603 1683 2.105006 AGAGACGATTTGCACAGCAT 57.895 45.000 0.00 0.00 38.76 3.79
1608 1697 4.752101 AGGCATATAAGAGACGATTTGCAC 59.248 41.667 0.00 0.00 33.30 4.57
1616 1705 7.549134 TGGCATAATAAAGGCATATAAGAGACG 59.451 37.037 0.00 0.00 35.21 4.18
1628 1717 5.823045 ACTACTCAAGTGGCATAATAAAGGC 59.177 40.000 0.00 0.00 36.93 4.35
1667 1758 6.183359 GCGATTAATAACATTGCATGCTCATG 60.183 38.462 20.33 21.32 41.60 3.07
1668 1759 5.860182 GCGATTAATAACATTGCATGCTCAT 59.140 36.000 20.33 8.21 31.99 2.90
1672 1763 5.214417 TCAGCGATTAATAACATTGCATGC 58.786 37.500 11.82 11.82 33.90 4.06
1673 1764 7.682593 TTTCAGCGATTAATAACATTGCATG 57.317 32.000 0.00 0.00 33.90 4.06
1687 1778 9.113838 AGTATTTGATTAGACATTTCAGCGATT 57.886 29.630 0.00 0.00 0.00 3.34
1688 1779 8.668510 AGTATTTGATTAGACATTTCAGCGAT 57.331 30.769 0.00 0.00 0.00 4.58
1689 1780 8.390354 CAAGTATTTGATTAGACATTTCAGCGA 58.610 33.333 0.00 0.00 36.36 4.93
1690 1781 7.164826 GCAAGTATTTGATTAGACATTTCAGCG 59.835 37.037 1.56 0.00 36.36 5.18
1726 1817 6.887368 TGTGATTCGTAATGAACTTGACAAG 58.113 36.000 13.77 13.77 40.00 3.16
1742 1833 0.747255 AGTCCCGGAGATGTGATTCG 59.253 55.000 0.73 0.00 0.00 3.34
1770 1862 5.175090 AGCAAAAGAAACAGAGTGCTAAC 57.825 39.130 0.00 0.00 40.40 2.34
1796 1889 4.520111 ACATAAACAAGCAAGATCAGTGCA 59.480 37.500 19.87 2.67 44.74 4.57
1814 1907 1.074775 CGGAGGGGAGGGGACATAA 60.075 63.158 0.00 0.00 0.00 1.90
1821 1914 2.873557 TAGAACAGCGGAGGGGAGGG 62.874 65.000 0.00 0.00 0.00 4.30
1824 1917 0.252103 AACTAGAACAGCGGAGGGGA 60.252 55.000 0.00 0.00 0.00 4.81
1831 1924 1.068474 CGTCCCAAACTAGAACAGCG 58.932 55.000 0.00 0.00 0.00 5.18
1836 1929 0.675083 TCGTGCGTCCCAAACTAGAA 59.325 50.000 0.00 0.00 0.00 2.10
1901 1994 2.748209 AAACTACACCTTGCCCAAGT 57.252 45.000 7.21 0.00 36.72 3.16
1939 2032 1.338020 CAACAACCCTTGGTTCAGAGC 59.662 52.381 0.00 0.00 43.05 4.09
1943 2036 0.032615 AGCCAACAACCCTTGGTTCA 60.033 50.000 0.00 0.00 43.05 3.18
1944 2037 1.989706 TAGCCAACAACCCTTGGTTC 58.010 50.000 0.00 0.00 43.05 3.62
1946 2039 1.710809 AGATAGCCAACAACCCTTGGT 59.289 47.619 0.15 0.00 42.57 3.67
1948 2041 4.589908 ACTTAGATAGCCAACAACCCTTG 58.410 43.478 0.00 0.00 0.00 3.61
1961 2054 9.469807 CCTACTACAATGCAAAGACTTAGATAG 57.530 37.037 0.00 0.00 0.00 2.08
1965 2058 5.874810 TGCCTACTACAATGCAAAGACTTAG 59.125 40.000 0.00 0.00 0.00 2.18
2001 2094 3.438781 TCCTGTTTGTTCAGACACAACAC 59.561 43.478 0.00 0.00 36.36 3.32
2010 2103 5.972107 ATGGAAGAATCCTGTTTGTTCAG 57.028 39.130 0.00 0.00 46.70 3.02
2134 2227 4.214119 GCTGTGCTTGTGAAATTCTAGACA 59.786 41.667 0.00 0.00 0.00 3.41
2135 2228 4.214119 TGCTGTGCTTGTGAAATTCTAGAC 59.786 41.667 0.00 0.00 0.00 2.59
2137 2230 4.754372 TGCTGTGCTTGTGAAATTCTAG 57.246 40.909 0.00 0.00 0.00 2.43
2322 2423 0.738389 ACACAGGAACAAGGTTTGCG 59.262 50.000 0.00 0.00 0.00 4.85
2358 2459 1.747206 GCATCCTTGGAACGCATAGGT 60.747 52.381 8.86 0.00 0.00 3.08
2400 2501 3.250744 CTGCGAGTCGTCCAAATTCTTA 58.749 45.455 15.08 0.00 0.00 2.10
2438 2539 3.385755 AGGCAGCAACACAGAAGATTTTT 59.614 39.130 0.00 0.00 0.00 1.94
2439 2540 2.961062 AGGCAGCAACACAGAAGATTTT 59.039 40.909 0.00 0.00 0.00 1.82
2446 2547 2.426522 GAACATAGGCAGCAACACAGA 58.573 47.619 0.00 0.00 0.00 3.41
2480 2585 2.507407 TCTACTCAAATTGGGTGGGC 57.493 50.000 9.05 0.00 30.82 5.36
2481 2586 7.475137 TTTTTATCTACTCAAATTGGGTGGG 57.525 36.000 9.05 1.75 30.82 4.61
2563 2685 9.123902 TGATAGCAACATTAGCAAATTAGATGT 57.876 29.630 0.00 0.00 32.70 3.06
2578 2700 7.888424 TGCAATTAAGCATATGATAGCAACAT 58.112 30.769 6.97 0.00 40.11 2.71
2679 2801 6.626623 GCAGCTTTCACCACAAGATTGATTAT 60.627 38.462 0.00 0.00 0.00 1.28
2692 2814 1.405105 GTCAGTTTGCAGCTTTCACCA 59.595 47.619 0.00 0.00 0.00 4.17
2694 2816 1.269257 GGGTCAGTTTGCAGCTTTCAC 60.269 52.381 0.00 0.00 0.00 3.18
2873 2999 9.355916 AGTTCTCAAGTATAGCATAGATGTACA 57.644 33.333 0.00 0.00 0.00 2.90
3063 3190 2.445682 AAGGCCCTGTTGTTGTTGTA 57.554 45.000 0.00 0.00 0.00 2.41
3077 3219 2.594131 ACTTGTTTGGGACTAAAGGCC 58.406 47.619 0.00 0.00 0.00 5.19
3545 3712 4.826274 TCTCCACAGAAACTATGGGAAG 57.174 45.455 0.00 0.00 34.03 3.46
3765 3947 5.622346 TCCCCAGTACAAAAGCAAATTTT 57.378 34.783 0.00 0.00 41.91 1.82
3766 3948 5.364778 GTTCCCCAGTACAAAAGCAAATTT 58.635 37.500 0.00 0.00 0.00 1.82
3808 4002 8.662781 ATCGAAAGCATAACTTATGAGCTAAA 57.337 30.769 12.26 0.00 37.75 1.85
3979 4320 6.857437 AGGCATAAGCAAATAGGAAAAACT 57.143 33.333 0.00 0.00 44.61 2.66
4160 4517 5.625150 AGGTTAATCAGGCCAACTATCATC 58.375 41.667 5.01 0.00 0.00 2.92
4314 4672 2.431057 CCACACTAGACCGCTCCTTAAT 59.569 50.000 0.00 0.00 0.00 1.40
4393 4751 4.040461 GCCATACTAATAGACTGGGCAAGA 59.960 45.833 0.00 0.00 39.88 3.02
4402 4760 8.123639 TGAGAAGGTATGCCATACTAATAGAC 57.876 38.462 14.18 0.00 36.04 2.59
4419 4777 1.349357 GCCAAAGAGGACTGAGAAGGT 59.651 52.381 0.00 0.00 41.22 3.50
4869 5246 8.887036 TTATCATATATTCATACCGATGTGCC 57.113 34.615 0.00 0.00 34.41 5.01
4960 5337 7.672239 ACTGTAAAGCCAAAAACTATATTCCCA 59.328 33.333 0.00 0.00 0.00 4.37
5195 5813 1.737793 GCACCTTTGACCCTGAATACG 59.262 52.381 0.00 0.00 0.00 3.06
5206 5824 1.823470 AGCAAGCACGCACCTTTGA 60.823 52.632 0.00 0.00 0.00 2.69
5311 5929 5.250543 TGTGATTTCCTCTCCATAACCTTCA 59.749 40.000 0.00 0.00 0.00 3.02
5450 6068 8.685838 ATAGTAGCGTAAAGAGAAAGAGAGAT 57.314 34.615 0.00 0.00 0.00 2.75
5520 6139 3.544684 CATATGCCCAGCAACACTAGAA 58.455 45.455 0.00 0.00 43.62 2.10
5670 6289 4.533815 ACAGATGTATCTAGTTGGGACGA 58.466 43.478 0.00 0.00 34.85 4.20
5703 6375 4.636206 GCGACCCAAATTCTTGTCTTAGAT 59.364 41.667 0.00 0.00 0.00 1.98
5723 6395 0.037326 CAGTTTGCTACTCCCTGCGA 60.037 55.000 0.00 0.00 33.85 5.10
5725 6397 1.160137 CACAGTTTGCTACTCCCTGC 58.840 55.000 0.00 0.00 33.85 4.85
6058 6733 7.180946 TCCTCTTCATCTTTCACTTCTTCCATA 59.819 37.037 0.00 0.00 0.00 2.74
6124 6799 3.820467 TCTCAACAAGTAACTTGGCATGG 59.180 43.478 0.00 0.00 44.81 3.66
6136 6811 1.202533 CGGACACCACTCTCAACAAGT 60.203 52.381 0.00 0.00 0.00 3.16
6387 7062 8.070171 CCCATAATATAAGAGCGTTTTTGACAG 58.930 37.037 0.00 0.00 0.00 3.51
6398 7073 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
6415 7090 7.284944 TCTCTAAAAAGACTTATACTCCCTCCG 59.715 40.741 0.00 0.00 0.00 4.63
6456 7131 2.299013 TCACTCACTTTGCTCCGTATGT 59.701 45.455 0.00 0.00 0.00 2.29
6458 7133 3.678056 TTCACTCACTTTGCTCCGTAT 57.322 42.857 0.00 0.00 0.00 3.06
6460 7135 2.037772 AGATTCACTCACTTTGCTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
6461 7136 2.693069 AGATTCACTCACTTTGCTCCG 58.307 47.619 0.00 0.00 0.00 4.63
6462 7137 4.390297 GTGTAGATTCACTCACTTTGCTCC 59.610 45.833 0.00 0.00 35.68 4.70
6463 7138 5.233988 AGTGTAGATTCACTCACTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
6464 7139 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
6556 7231 0.535335 GCAACGTGATACTCCCTCCA 59.465 55.000 0.00 0.00 0.00 3.86
6570 7245 2.347846 GCAAAAAGAACATGCAGCAACG 60.348 45.455 0.00 0.00 39.81 4.10
6891 7569 7.454260 AATTTTCAACCTAGGAAGATCACAC 57.546 36.000 17.98 0.00 0.00 3.82
6892 7570 9.396022 GATAATTTTCAACCTAGGAAGATCACA 57.604 33.333 17.98 0.00 0.00 3.58
6924 9431 5.328691 CAATGCAAAATCAACATCAATGCC 58.671 37.500 0.00 0.00 0.00 4.40
6925 9432 4.791163 GCAATGCAAAATCAACATCAATGC 59.209 37.500 0.00 0.00 0.00 3.56
7028 9577 4.895668 TGCAGATCAGTCATGCCATATA 57.104 40.909 0.00 0.00 39.22 0.86
7040 9589 3.470709 ACACCCGATATTTGCAGATCAG 58.529 45.455 0.00 0.00 0.00 2.90
7116 9671 6.310941 TGAATCTCCACCTTTTATGTCCAAA 58.689 36.000 0.00 0.00 0.00 3.28
7220 9776 0.390472 GCTCAAGAACCCGACCTGAG 60.390 60.000 0.00 0.00 0.00 3.35
7221 9777 1.671742 GCTCAAGAACCCGACCTGA 59.328 57.895 0.00 0.00 0.00 3.86
7377 9933 0.893727 TGCTCTGGTACTCAGACGCA 60.894 55.000 20.72 20.72 46.71 5.24
7446 10002 1.447314 GTTTCCGGTACCTCTGCCG 60.447 63.158 10.90 0.00 46.80 5.69
7454 10010 1.265905 CCAGTTGCTTGTTTCCGGTAC 59.734 52.381 0.00 1.45 0.00 3.34
7474 10030 0.304705 CTGTCCACTTGTGTTGTCGC 59.695 55.000 0.00 0.00 0.00 5.19
7505 10062 3.738899 GCAAATGTATGCATCAGTTGGGG 60.739 47.826 25.85 12.26 45.70 4.96
7541 10100 5.300792 ACACGGTGAACAATTTAACCAGATT 59.699 36.000 16.29 0.00 32.69 2.40
7559 10133 2.868839 GCTATACCACACACAACACGGT 60.869 50.000 0.00 0.00 0.00 4.83
7572 10146 6.126883 ACAAAGTGGCTATAACTGCTATACCA 60.127 38.462 0.00 0.00 0.00 3.25
7573 10147 6.289064 ACAAAGTGGCTATAACTGCTATACC 58.711 40.000 0.00 0.00 0.00 2.73
7585 10159 2.093973 CAGGAGTCGACAAAGTGGCTAT 60.094 50.000 19.50 0.00 0.00 2.97
7587 10161 0.034059 CAGGAGTCGACAAAGTGGCT 59.966 55.000 19.50 0.00 0.00 4.75
7688 10270 8.814235 GCATTCAGAGAAATTTATGACAATTGG 58.186 33.333 10.83 0.00 0.00 3.16
7700 10282 7.824672 AGATTTTCTTCGCATTCAGAGAAATT 58.175 30.769 0.00 0.00 35.57 1.82
7707 10289 4.952262 TGGAGATTTTCTTCGCATTCAG 57.048 40.909 0.00 0.00 0.00 3.02
7858 10442 3.646736 ATACAAGCCAGTAGGTTTCCC 57.353 47.619 0.00 0.00 36.02 3.97
7859 10443 4.585879 TGAATACAAGCCAGTAGGTTTCC 58.414 43.478 0.00 0.00 36.02 3.13
7875 10459 5.715429 CTCATGTGTCTTGAGCTGAATAC 57.285 43.478 0.00 0.00 34.68 1.89
7919 10503 2.317530 TGTGGTGTGTTGATTGTCGA 57.682 45.000 0.00 0.00 0.00 4.20
7969 10553 6.798482 TGGTTGATGTATTGCTGATGAATTC 58.202 36.000 0.00 0.00 0.00 2.17
7970 10554 6.778834 TGGTTGATGTATTGCTGATGAATT 57.221 33.333 0.00 0.00 0.00 2.17
8003 10587 1.134818 CCCAGCGCTTACTGATGTACA 60.135 52.381 7.50 0.00 40.25 2.90
8004 10588 1.136305 TCCCAGCGCTTACTGATGTAC 59.864 52.381 7.50 0.00 40.25 2.90
8005 10589 1.480789 TCCCAGCGCTTACTGATGTA 58.519 50.000 7.50 0.00 40.25 2.29
8090 13922 4.013267 ACTTGGTCTTCAGATTCACTGG 57.987 45.455 0.00 0.00 45.76 4.00
8092 13924 5.305644 ACAGTACTTGGTCTTCAGATTCACT 59.694 40.000 0.00 0.00 0.00 3.41
8107 13939 6.365247 ACGACAGCAACTAAATACAGTACTTG 59.635 38.462 0.00 0.00 0.00 3.16
8113 13945 4.923871 AGACACGACAGCAACTAAATACAG 59.076 41.667 0.00 0.00 0.00 2.74
8115 13947 6.250951 GTCTAGACACGACAGCAACTAAATAC 59.749 42.308 18.20 0.00 0.00 1.89
8116 13948 6.072342 TGTCTAGACACGACAGCAACTAAATA 60.072 38.462 21.74 0.00 36.54 1.40
8117 13949 5.162075 GTCTAGACACGACAGCAACTAAAT 58.838 41.667 18.20 0.00 0.00 1.40
8118 13950 4.037089 TGTCTAGACACGACAGCAACTAAA 59.963 41.667 21.74 0.00 36.54 1.85
8119 13951 3.566742 TGTCTAGACACGACAGCAACTAA 59.433 43.478 21.74 0.00 36.54 2.24
8171 14003 6.127196 TGTGTTGGTAATTGCTCTTCCTTTTT 60.127 34.615 0.00 0.00 0.00 1.94
8203 14038 5.047660 AGTCCTAGTTACTTCACTCTGCTTG 60.048 44.000 0.00 0.00 0.00 4.01
8206 14041 4.142337 GGAGTCCTAGTTACTTCACTCTGC 60.142 50.000 0.41 1.26 32.49 4.26
8207 14042 5.258051 AGGAGTCCTAGTTACTTCACTCTG 58.742 45.833 10.94 0.00 32.49 3.35
8208 14043 5.252164 AGAGGAGTCCTAGTTACTTCACTCT 59.748 44.000 12.99 13.54 31.76 3.24
8210 14045 5.523883 AGAGGAGTCCTAGTTACTTCACT 57.476 43.478 12.99 0.00 31.76 3.41
8211 14046 5.947566 AGAAGAGGAGTCCTAGTTACTTCAC 59.052 44.000 27.11 11.73 34.17 3.18
8212 14047 6.142259 AGAAGAGGAGTCCTAGTTACTTCA 57.858 41.667 27.11 0.00 34.17 3.02
8213 14048 6.127563 CCAAGAAGAGGAGTCCTAGTTACTTC 60.128 46.154 21.79 21.79 32.83 3.01
8215 14050 5.015391 TCCAAGAAGAGGAGTCCTAGTTACT 59.985 44.000 12.99 0.94 31.76 2.24
8216 14051 5.125900 GTCCAAGAAGAGGAGTCCTAGTTAC 59.874 48.000 12.99 0.00 35.42 2.50
8217 14052 5.222275 TGTCCAAGAAGAGGAGTCCTAGTTA 60.222 44.000 12.99 0.00 35.42 2.24
8219 14054 3.076182 TGTCCAAGAAGAGGAGTCCTAGT 59.924 47.826 12.99 2.16 35.42 2.57
8221 14056 3.432378 GTGTCCAAGAAGAGGAGTCCTA 58.568 50.000 12.99 0.00 35.42 2.94
8238 14073 1.591703 TGCAGGATGGAGTCGTGTC 59.408 57.895 0.00 0.00 43.07 3.67
8259 14094 3.326836 AGAAAGAAGAAGAAGGCGGAG 57.673 47.619 0.00 0.00 0.00 4.63
8260 14095 4.039973 TGTTAGAAAGAAGAAGAAGGCGGA 59.960 41.667 0.00 0.00 0.00 5.54
8265 14100 6.855403 GCTTTGCTGTTAGAAAGAAGAAGAAG 59.145 38.462 0.00 0.00 31.89 2.85
8266 14101 6.238759 GGCTTTGCTGTTAGAAAGAAGAAGAA 60.239 38.462 0.00 0.00 31.89 2.52
8336 14171 3.386402 GGAGAAGATGAGGTACTTGGGAG 59.614 52.174 0.00 0.00 41.55 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.