Multiple sequence alignment - TraesCS5A01G442100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G442100 chr5A 100.000 3478 0 0 1 3478 622767144 622763667 0.000000e+00 6423.0
1 TraesCS5A01G442100 chr5A 94.170 223 9 1 3260 3478 622730238 622730016 1.550000e-88 337.0
2 TraesCS5A01G442100 chr5A 82.099 162 17 7 3304 3465 622721568 622721419 1.010000e-25 128.0
3 TraesCS5A01G442100 chr5A 91.525 59 3 2 2272 2328 622733352 622733294 2.880000e-11 80.5
4 TraesCS5A01G442100 chr5D 94.456 1425 66 5 1050 2473 498485261 498483849 0.000000e+00 2182.0
5 TraesCS5A01G442100 chr5D 85.825 388 33 8 2095 2472 498475611 498475236 3.250000e-105 392.0
6 TraesCS5A01G442100 chr5D 85.965 285 19 11 2490 2772 498481982 498481717 5.680000e-73 285.0
7 TraesCS5A01G442100 chr5D 79.487 390 45 16 1588 1974 498473073 498472716 9.640000e-61 244.0
8 TraesCS5A01G442100 chr5D 77.228 404 50 29 2791 3163 498481640 498481248 7.610000e-47 198.0
9 TraesCS5A01G442100 chr5D 84.571 175 7 4 3304 3478 498468807 498468653 4.650000e-34 156.0
10 TraesCS5A01G442100 chr5D 92.105 76 6 0 3183 3258 110872176 110872251 1.320000e-19 108.0
11 TraesCS5A01G442100 chr5B 93.301 1433 76 5 1050 2473 617816079 617814658 0.000000e+00 2097.0
12 TraesCS5A01G442100 chr5B 83.665 502 33 18 2562 3024 617813192 617812701 8.920000e-116 427.0
13 TraesCS5A01G442100 chr5B 87.727 220 15 4 3259 3478 617812202 617811995 2.680000e-61 246.0
14 TraesCS5A01G442100 chr5B 86.387 191 13 6 45 230 617818265 617818083 2.740000e-46 196.0
15 TraesCS5A01G442100 chrUn 88.444 225 10 4 3259 3478 326421848 326422061 1.240000e-64 257.0
16 TraesCS5A01G442100 chrUn 88.000 225 11 4 3259 3478 363174708 363174495 5.760000e-63 252.0
17 TraesCS5A01G442100 chrUn 88.208 212 9 4 3272 3478 374389582 374389382 4.490000e-59 239.0
18 TraesCS5A01G442100 chrUn 88.764 89 9 1 3308 3396 381046193 381046106 1.320000e-19 108.0
19 TraesCS5A01G442100 chr4B 93.827 81 5 0 3178 3258 80977475 80977395 4.710000e-24 122.0
20 TraesCS5A01G442100 chr7D 93.421 76 5 0 3183 3258 538906619 538906694 2.840000e-21 113.0
21 TraesCS5A01G442100 chr2B 95.000 60 3 0 3199 3258 391479965 391479906 1.030000e-15 95.3
22 TraesCS5A01G442100 chr2D 91.045 67 6 0 3183 3249 329159415 329159481 1.330000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G442100 chr5A 622763667 622767144 3477 True 6423.000000 6423 100.000000 1 3478 1 chr5A.!!$R2 3477
1 TraesCS5A01G442100 chr5A 622730016 622733352 3336 True 208.750000 337 92.847500 2272 3478 2 chr5A.!!$R3 1206
2 TraesCS5A01G442100 chr5D 498481248 498485261 4013 True 888.333333 2182 85.883000 1050 3163 3 chr5D.!!$R2 2113
3 TraesCS5A01G442100 chr5D 498468653 498475611 6958 True 264.000000 392 83.294333 1588 3478 3 chr5D.!!$R1 1890
4 TraesCS5A01G442100 chr5B 617811995 617818265 6270 True 741.500000 2097 87.770000 45 3478 4 chr5B.!!$R1 3433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 927 0.029567 GGACGAGGATCACTAGCACG 59.970 60.0 0.0 0.0 33.17 5.34 F
926 1191 0.038744 CATTGCTTGGAGACAGGGGT 59.961 55.0 0.0 0.0 44.54 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 2995 0.532573 GCTCGACAGATCCAGTTCCA 59.467 55.0 0.0 0.0 0.0 3.53 R
2832 8049 0.392998 AGCTATCCAGGCAAACGGTG 60.393 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.553597 GCACGTTAGAGGATCGAGG 57.446 57.895 0.00 0.00 42.67 4.63
19 20 0.595310 GCACGTTAGAGGATCGAGGC 60.595 60.000 0.00 0.00 42.67 4.70
20 21 0.738975 CACGTTAGAGGATCGAGGCA 59.261 55.000 0.00 0.00 42.67 4.75
21 22 1.338337 CACGTTAGAGGATCGAGGCAT 59.662 52.381 0.00 0.00 42.67 4.40
22 23 1.609555 ACGTTAGAGGATCGAGGCATC 59.390 52.381 0.00 0.00 42.67 3.91
43 44 4.012895 CACGCCACGGTGCTTGAC 62.013 66.667 1.68 0.00 32.66 3.18
67 68 0.578211 TTCGACCGACGCTTTTGAAC 59.422 50.000 0.00 0.00 42.26 3.18
89 90 4.455877 ACTTTTCAAGCACCCGAGAATTAG 59.544 41.667 0.00 0.00 0.00 1.73
91 92 1.277842 TCAAGCACCCGAGAATTAGCA 59.722 47.619 0.00 0.00 0.00 3.49
92 93 2.083774 CAAGCACCCGAGAATTAGCAA 58.916 47.619 0.00 0.00 0.00 3.91
112 113 2.663279 AAAGCGAAACTGTACAAGCG 57.337 45.000 0.00 0.00 0.00 4.68
130 131 4.567385 CTCGCTGCGCTCCCTCTC 62.567 72.222 18.65 0.00 0.00 3.20
135 136 4.841617 TGCGCTCCCTCTCCCGAT 62.842 66.667 9.73 0.00 0.00 4.18
136 137 2.597805 GCGCTCCCTCTCCCGATA 60.598 66.667 0.00 0.00 0.00 2.92
137 138 2.201022 GCGCTCCCTCTCCCGATAA 61.201 63.158 0.00 0.00 0.00 1.75
138 139 1.745320 GCGCTCCCTCTCCCGATAAA 61.745 60.000 0.00 0.00 0.00 1.40
139 140 0.750850 CGCTCCCTCTCCCGATAAAA 59.249 55.000 0.00 0.00 0.00 1.52
140 141 1.269831 CGCTCCCTCTCCCGATAAAAG 60.270 57.143 0.00 0.00 0.00 2.27
141 142 1.070914 GCTCCCTCTCCCGATAAAAGG 59.929 57.143 0.00 0.00 0.00 3.11
142 143 2.679082 CTCCCTCTCCCGATAAAAGGA 58.321 52.381 0.00 0.00 0.00 3.36
143 144 3.243724 CTCCCTCTCCCGATAAAAGGAT 58.756 50.000 0.00 0.00 0.00 3.24
144 145 2.972713 TCCCTCTCCCGATAAAAGGATG 59.027 50.000 0.00 0.00 0.00 3.51
200 201 4.125097 CCAACGTTACGCGCCGTC 62.125 66.667 17.39 0.89 46.11 4.79
205 206 3.770424 GTTACGCGCCGTCCACAC 61.770 66.667 5.73 0.00 41.54 3.82
371 416 6.774656 TCTTCTTCTCTTCCTTTTTGCATTCT 59.225 34.615 0.00 0.00 0.00 2.40
372 417 6.566197 TCTTCTCTTCCTTTTTGCATTCTC 57.434 37.500 0.00 0.00 0.00 2.87
388 433 4.446051 GCATTCTCCTTCTTCGTATGCTAC 59.554 45.833 0.00 0.00 35.32 3.58
389 434 5.737635 GCATTCTCCTTCTTCGTATGCTACT 60.738 44.000 0.00 0.00 35.32 2.57
395 440 7.122353 TCTCCTTCTTCGTATGCTACTAAAGTT 59.878 37.037 0.00 0.00 0.00 2.66
443 515 8.248945 AGATCAAATATTTCAGTTGAAAGCTGG 58.751 33.333 12.31 2.82 43.83 4.85
447 519 4.590850 ATTTCAGTTGAAAGCTGGGTTC 57.409 40.909 12.31 0.00 45.87 3.62
473 545 3.738282 GTCGATTCTTCATCCGAATCTGG 59.262 47.826 10.05 0.00 42.76 3.86
489 561 4.843220 ATCTGGCTGAAAGTTGACAAAG 57.157 40.909 0.00 0.00 35.30 2.77
495 567 5.163468 TGGCTGAAAGTTGACAAAGCATTAA 60.163 36.000 10.20 0.00 35.30 1.40
496 568 5.928264 GGCTGAAAGTTGACAAAGCATTAAT 59.072 36.000 10.20 0.00 35.30 1.40
497 569 6.089954 GGCTGAAAGTTGACAAAGCATTAATC 59.910 38.462 10.20 0.00 35.30 1.75
498 570 6.865205 GCTGAAAGTTGACAAAGCATTAATCT 59.135 34.615 4.32 0.00 35.30 2.40
499 571 7.383300 GCTGAAAGTTGACAAAGCATTAATCTT 59.617 33.333 4.32 0.00 35.30 2.40
500 572 8.801715 TGAAAGTTGACAAAGCATTAATCTTC 57.198 30.769 0.00 0.00 0.00 2.87
501 573 8.632679 TGAAAGTTGACAAAGCATTAATCTTCT 58.367 29.630 0.00 0.00 0.00 2.85
503 575 8.807667 AAGTTGACAAAGCATTAATCTTCTTG 57.192 30.769 0.00 0.00 0.00 3.02
504 576 7.373493 AGTTGACAAAGCATTAATCTTCTTGG 58.627 34.615 0.00 0.00 0.00 3.61
505 577 6.271488 TGACAAAGCATTAATCTTCTTGGG 57.729 37.500 0.00 0.00 0.00 4.12
506 578 5.077134 ACAAAGCATTAATCTTCTTGGGC 57.923 39.130 0.00 0.00 0.00 5.36
510 758 2.796032 GCATTAATCTTCTTGGGCGTGC 60.796 50.000 0.00 0.00 0.00 5.34
517 765 2.951475 TTCTTGGGCGTGCGGACTTT 62.951 55.000 5.27 0.00 0.00 2.66
518 766 2.966309 CTTGGGCGTGCGGACTTTC 61.966 63.158 5.27 0.00 0.00 2.62
531 779 1.140816 GACTTTCGTGTGCAGACTCC 58.859 55.000 12.66 0.00 0.00 3.85
544 792 2.227388 GCAGACTCCACATCACCAAAAG 59.773 50.000 0.00 0.00 0.00 2.27
545 793 2.227388 CAGACTCCACATCACCAAAAGC 59.773 50.000 0.00 0.00 0.00 3.51
546 794 2.107204 AGACTCCACATCACCAAAAGCT 59.893 45.455 0.00 0.00 0.00 3.74
548 796 2.624838 ACTCCACATCACCAAAAGCTTG 59.375 45.455 0.00 0.00 0.00 4.01
549 797 2.624838 CTCCACATCACCAAAAGCTTGT 59.375 45.455 0.00 0.00 0.00 3.16
550 798 2.361757 TCCACATCACCAAAAGCTTGTG 59.638 45.455 9.89 9.89 35.42 3.33
551 799 2.101249 CCACATCACCAAAAGCTTGTGT 59.899 45.455 15.53 3.05 34.18 3.72
552 800 3.374745 CACATCACCAAAAGCTTGTGTC 58.625 45.455 15.53 0.00 32.01 3.67
572 837 5.297776 GTGTCCAATCAGTTGAATCCCATAG 59.702 44.000 0.00 0.00 37.53 2.23
584 849 4.950475 TGAATCCCATAGCTCTATCTACCG 59.050 45.833 0.00 0.00 0.00 4.02
585 850 4.594675 ATCCCATAGCTCTATCTACCGT 57.405 45.455 0.00 0.00 0.00 4.83
587 852 5.509832 TCCCATAGCTCTATCTACCGTTA 57.490 43.478 0.00 0.00 0.00 3.18
588 853 5.498393 TCCCATAGCTCTATCTACCGTTAG 58.502 45.833 0.00 0.00 0.00 2.34
589 854 4.096682 CCCATAGCTCTATCTACCGTTAGC 59.903 50.000 0.00 0.00 0.00 3.09
590 855 4.096682 CCATAGCTCTATCTACCGTTAGCC 59.903 50.000 0.00 0.00 0.00 3.93
594 859 3.069158 GCTCTATCTACCGTTAGCCCAAA 59.931 47.826 0.00 0.00 0.00 3.28
595 860 4.442472 GCTCTATCTACCGTTAGCCCAAAA 60.442 45.833 0.00 0.00 0.00 2.44
596 861 5.014808 TCTATCTACCGTTAGCCCAAAAC 57.985 43.478 0.00 0.00 0.00 2.43
597 862 3.994931 ATCTACCGTTAGCCCAAAACT 57.005 42.857 0.00 0.00 0.00 2.66
598 863 5.893255 TCTATCTACCGTTAGCCCAAAACTA 59.107 40.000 0.00 0.00 0.00 2.24
599 864 4.192429 TCTACCGTTAGCCCAAAACTAC 57.808 45.455 0.00 0.00 0.00 2.73
601 866 1.081094 CCGTTAGCCCAAAACTACGG 58.919 55.000 0.00 0.00 32.27 4.02
603 868 1.728425 CGTTAGCCCAAAACTACGGAC 59.272 52.381 0.00 0.00 0.00 4.79
604 869 2.611224 CGTTAGCCCAAAACTACGGACT 60.611 50.000 0.00 0.00 0.00 3.85
605 870 3.367292 CGTTAGCCCAAAACTACGGACTA 60.367 47.826 0.00 0.00 0.00 2.59
606 871 4.179298 GTTAGCCCAAAACTACGGACTAG 58.821 47.826 0.00 0.00 0.00 2.57
607 872 2.254508 AGCCCAAAACTACGGACTAGT 58.745 47.619 0.00 0.00 37.28 2.57
608 873 2.233186 AGCCCAAAACTACGGACTAGTC 59.767 50.000 14.87 14.87 34.26 2.59
610 875 3.846360 CCCAAAACTACGGACTAGTCAG 58.154 50.000 23.91 21.82 34.26 3.51
612 877 4.460382 CCCAAAACTACGGACTAGTCAGTA 59.540 45.833 27.20 27.20 38.81 2.74
618 883 3.988976 ACGGACTAGTCAGTAGTACCA 57.011 47.619 24.64 0.00 42.48 3.25
619 884 3.871485 ACGGACTAGTCAGTAGTACCAG 58.129 50.000 24.64 5.38 42.48 4.00
620 885 3.517100 ACGGACTAGTCAGTAGTACCAGA 59.483 47.826 24.64 0.00 42.48 3.86
622 887 4.382901 CGGACTAGTCAGTAGTACCAGACT 60.383 50.000 23.91 22.31 42.48 3.24
623 888 4.877251 GGACTAGTCAGTAGTACCAGACTG 59.123 50.000 25.15 19.27 42.48 3.51
630 895 6.576662 TCAGTAGTACCAGACTGAAGAAAG 57.423 41.667 16.47 0.00 46.93 2.62
632 897 6.431543 TCAGTAGTACCAGACTGAAGAAAGAG 59.568 42.308 16.47 0.00 46.93 2.85
636 901 2.968574 ACCAGACTGAAGAAAGAGCAGA 59.031 45.455 3.32 0.00 33.94 4.26
637 902 3.006752 ACCAGACTGAAGAAAGAGCAGAG 59.993 47.826 3.32 0.00 33.94 3.35
638 903 3.006752 CCAGACTGAAGAAAGAGCAGAGT 59.993 47.826 3.32 0.00 33.94 3.24
640 905 5.105392 CCAGACTGAAGAAAGAGCAGAGTAT 60.105 44.000 3.32 0.00 33.94 2.12
641 906 6.035843 CAGACTGAAGAAAGAGCAGAGTATC 58.964 44.000 0.00 0.00 33.94 2.24
655 920 3.907894 GAGTATCTGGACGAGGATCAC 57.092 52.381 0.00 0.00 33.17 3.06
656 921 3.482436 GAGTATCTGGACGAGGATCACT 58.518 50.000 0.00 0.00 33.17 3.41
657 922 4.643463 GAGTATCTGGACGAGGATCACTA 58.357 47.826 0.00 0.00 33.17 2.74
658 923 4.647611 AGTATCTGGACGAGGATCACTAG 58.352 47.826 0.00 0.00 33.17 2.57
659 924 1.681538 TCTGGACGAGGATCACTAGC 58.318 55.000 0.00 0.00 33.17 3.42
661 926 1.066303 CTGGACGAGGATCACTAGCAC 59.934 57.143 0.00 0.00 33.17 4.40
662 927 0.029567 GGACGAGGATCACTAGCACG 59.970 60.000 0.00 0.00 33.17 5.34
663 928 1.015109 GACGAGGATCACTAGCACGA 58.985 55.000 0.00 0.00 33.17 4.35
664 929 1.003331 GACGAGGATCACTAGCACGAG 60.003 57.143 0.00 0.00 33.17 4.18
665 930 0.317436 CGAGGATCACTAGCACGAGC 60.317 60.000 0.00 0.00 36.40 5.03
666 931 0.741326 GAGGATCACTAGCACGAGCA 59.259 55.000 7.77 0.00 38.14 4.26
667 932 0.457851 AGGATCACTAGCACGAGCAC 59.542 55.000 7.77 0.00 45.49 4.40
668 933 0.457851 GGATCACTAGCACGAGCACT 59.542 55.000 7.77 0.00 45.49 4.40
669 934 1.676529 GGATCACTAGCACGAGCACTA 59.323 52.381 7.77 0.00 45.49 2.74
670 935 2.287308 GGATCACTAGCACGAGCACTAG 60.287 54.545 7.77 3.63 45.49 2.57
671 936 0.452184 TCACTAGCACGAGCACTAGC 59.548 55.000 7.77 0.00 45.49 3.42
672 937 0.171231 CACTAGCACGAGCACTAGCA 59.829 55.000 7.77 0.00 45.49 3.49
673 938 0.888619 ACTAGCACGAGCACTAGCAA 59.111 50.000 7.77 0.00 45.49 3.91
674 939 1.135257 ACTAGCACGAGCACTAGCAAG 60.135 52.381 7.77 0.00 45.49 4.01
675 940 0.458543 TAGCACGAGCACTAGCAAGC 60.459 55.000 7.77 0.00 45.49 4.01
676 941 2.029288 GCACGAGCACTAGCAAGCA 61.029 57.895 0.00 0.00 45.49 3.91
677 942 1.784062 CACGAGCACTAGCAAGCAC 59.216 57.895 5.39 0.00 45.49 4.40
678 943 0.945743 CACGAGCACTAGCAAGCACA 60.946 55.000 5.39 0.00 45.49 4.57
679 944 0.946221 ACGAGCACTAGCAAGCACAC 60.946 55.000 5.39 0.00 45.49 3.82
680 945 0.945743 CGAGCACTAGCAAGCACACA 60.946 55.000 5.39 0.00 45.49 3.72
681 946 0.514691 GAGCACTAGCAAGCACACAC 59.485 55.000 5.39 0.00 45.49 3.82
682 947 0.179048 AGCACTAGCAAGCACACACA 60.179 50.000 5.39 0.00 45.49 3.72
683 948 0.040958 GCACTAGCAAGCACACACAC 60.041 55.000 0.00 0.00 41.58 3.82
684 949 1.586422 CACTAGCAAGCACACACACT 58.414 50.000 0.00 0.00 0.00 3.55
685 950 1.528586 CACTAGCAAGCACACACACTC 59.471 52.381 0.00 0.00 0.00 3.51
686 951 1.138859 ACTAGCAAGCACACACACTCA 59.861 47.619 0.00 0.00 0.00 3.41
687 952 1.528586 CTAGCAAGCACACACACTCAC 59.471 52.381 0.00 0.00 0.00 3.51
688 953 0.392863 AGCAAGCACACACACTCACA 60.393 50.000 0.00 0.00 0.00 3.58
689 954 0.664761 GCAAGCACACACACTCACAT 59.335 50.000 0.00 0.00 0.00 3.21
690 955 1.872952 GCAAGCACACACACTCACATA 59.127 47.619 0.00 0.00 0.00 2.29
691 956 2.349817 GCAAGCACACACACTCACATAC 60.350 50.000 0.00 0.00 0.00 2.39
692 957 3.133691 CAAGCACACACACTCACATACT 58.866 45.455 0.00 0.00 0.00 2.12
693 958 4.306600 CAAGCACACACACTCACATACTA 58.693 43.478 0.00 0.00 0.00 1.82
694 959 4.179926 AGCACACACACTCACATACTAG 57.820 45.455 0.00 0.00 0.00 2.57
695 960 2.668457 GCACACACACTCACATACTAGC 59.332 50.000 0.00 0.00 0.00 3.42
696 961 3.254060 CACACACACTCACATACTAGCC 58.746 50.000 0.00 0.00 0.00 3.93
697 962 2.897326 ACACACACTCACATACTAGCCA 59.103 45.455 0.00 0.00 0.00 4.75
698 963 3.056536 ACACACACTCACATACTAGCCAG 60.057 47.826 0.00 0.00 0.00 4.85
699 964 2.497675 ACACACTCACATACTAGCCAGG 59.502 50.000 0.00 0.00 0.00 4.45
700 965 2.760650 CACACTCACATACTAGCCAGGA 59.239 50.000 0.00 0.00 0.00 3.86
701 966 3.027412 ACACTCACATACTAGCCAGGAG 58.973 50.000 0.00 0.00 0.00 3.69
702 967 3.291584 CACTCACATACTAGCCAGGAGA 58.708 50.000 0.00 0.00 0.00 3.71
703 968 3.067461 CACTCACATACTAGCCAGGAGAC 59.933 52.174 0.00 0.00 0.00 3.36
704 969 3.291584 CTCACATACTAGCCAGGAGACA 58.708 50.000 0.00 0.00 0.00 3.41
705 970 3.024547 TCACATACTAGCCAGGAGACAC 58.975 50.000 0.00 0.00 0.00 3.67
706 971 2.025155 ACATACTAGCCAGGAGACACG 58.975 52.381 0.00 0.00 0.00 4.49
707 972 1.338337 CATACTAGCCAGGAGACACGG 59.662 57.143 0.00 0.00 0.00 4.94
708 973 0.330604 TACTAGCCAGGAGACACGGT 59.669 55.000 0.00 0.00 0.00 4.83
709 974 1.251527 ACTAGCCAGGAGACACGGTG 61.252 60.000 6.58 6.58 0.00 4.94
710 975 1.949847 CTAGCCAGGAGACACGGTGG 61.950 65.000 13.48 0.00 0.00 4.61
712 977 3.625897 CCAGGAGACACGGTGGCA 61.626 66.667 17.70 0.00 0.00 4.92
713 978 2.357517 CAGGAGACACGGTGGCAC 60.358 66.667 17.70 9.70 0.00 5.01
714 979 3.626924 AGGAGACACGGTGGCACC 61.627 66.667 26.95 26.95 36.27 5.01
715 980 3.936203 GGAGACACGGTGGCACCA 61.936 66.667 34.11 0.00 36.05 4.17
716 981 2.665185 GAGACACGGTGGCACCAC 60.665 66.667 34.11 21.31 45.49 4.16
717 982 3.161450 AGACACGGTGGCACCACT 61.161 61.111 34.11 22.99 45.52 4.00
718 983 1.812686 GAGACACGGTGGCACCACTA 61.813 60.000 34.11 0.00 45.52 2.74
719 984 1.374252 GACACGGTGGCACCACTAG 60.374 63.158 34.11 20.88 45.52 2.57
720 985 2.095978 GACACGGTGGCACCACTAGT 62.096 60.000 34.11 24.76 45.52 2.57
737 1002 5.877031 CACTAGTGGAAGCTGAATGATTTG 58.123 41.667 15.49 0.00 0.00 2.32
738 1003 3.863142 AGTGGAAGCTGAATGATTTGC 57.137 42.857 0.00 0.00 0.00 3.68
739 1004 3.428532 AGTGGAAGCTGAATGATTTGCT 58.571 40.909 0.00 1.71 37.37 3.91
740 1005 3.830755 AGTGGAAGCTGAATGATTTGCTT 59.169 39.130 15.54 15.54 46.69 3.91
745 1010 5.717078 AAGCTGAATGATTTGCTTCTCAA 57.283 34.783 11.63 0.00 41.21 3.02
746 1011 5.056894 AGCTGAATGATTTGCTTCTCAAC 57.943 39.130 0.00 0.00 33.73 3.18
747 1012 4.765856 AGCTGAATGATTTGCTTCTCAACT 59.234 37.500 0.00 0.00 33.73 3.16
748 1013 4.857588 GCTGAATGATTTGCTTCTCAACTG 59.142 41.667 0.00 0.00 33.73 3.16
749 1014 5.381174 TGAATGATTTGCTTCTCAACTGG 57.619 39.130 0.00 0.00 33.73 4.00
750 1015 3.863142 ATGATTTGCTTCTCAACTGGC 57.137 42.857 0.00 0.00 33.73 4.85
751 1016 2.867624 TGATTTGCTTCTCAACTGGCT 58.132 42.857 0.00 0.00 33.73 4.75
752 1017 3.225104 TGATTTGCTTCTCAACTGGCTT 58.775 40.909 0.00 0.00 33.73 4.35
753 1018 3.005050 TGATTTGCTTCTCAACTGGCTTG 59.995 43.478 0.00 0.00 33.73 4.01
754 1019 2.057137 TTGCTTCTCAACTGGCTTGT 57.943 45.000 0.00 0.00 0.00 3.16
755 1020 2.057137 TGCTTCTCAACTGGCTTGTT 57.943 45.000 0.00 0.00 0.00 2.83
756 1021 3.207265 TGCTTCTCAACTGGCTTGTTA 57.793 42.857 0.00 0.00 0.00 2.41
757 1022 2.878406 TGCTTCTCAACTGGCTTGTTAC 59.122 45.455 0.00 0.00 0.00 2.50
758 1023 2.878406 GCTTCTCAACTGGCTTGTTACA 59.122 45.455 0.00 0.00 0.00 2.41
759 1024 3.315191 GCTTCTCAACTGGCTTGTTACAA 59.685 43.478 0.00 0.00 0.00 2.41
760 1025 4.022849 GCTTCTCAACTGGCTTGTTACAAT 60.023 41.667 0.00 0.00 0.00 2.71
761 1026 5.689383 TTCTCAACTGGCTTGTTACAATC 57.311 39.130 0.00 0.00 0.00 2.67
762 1027 4.072131 TCTCAACTGGCTTGTTACAATCC 58.928 43.478 10.68 10.68 0.00 3.01
763 1028 3.820467 CTCAACTGGCTTGTTACAATCCA 59.180 43.478 18.02 18.02 0.00 3.41
764 1029 4.211125 TCAACTGGCTTGTTACAATCCAA 58.789 39.130 19.26 4.39 0.00 3.53
765 1030 4.278170 TCAACTGGCTTGTTACAATCCAAG 59.722 41.667 19.26 15.37 40.77 3.61
766 1031 3.157087 ACTGGCTTGTTACAATCCAAGG 58.843 45.455 19.26 12.30 38.76 3.61
767 1032 3.181434 ACTGGCTTGTTACAATCCAAGGA 60.181 43.478 19.26 0.00 38.76 3.36
768 1033 3.153919 TGGCTTGTTACAATCCAAGGAC 58.846 45.455 17.00 0.00 38.76 3.85
769 1034 2.492088 GGCTTGTTACAATCCAAGGACC 59.508 50.000 12.47 0.00 38.76 4.46
770 1035 3.421844 GCTTGTTACAATCCAAGGACCT 58.578 45.455 0.00 0.00 38.76 3.85
771 1036 3.191371 GCTTGTTACAATCCAAGGACCTG 59.809 47.826 0.00 0.00 38.76 4.00
772 1037 3.433306 TGTTACAATCCAAGGACCTGG 57.567 47.619 0.00 0.00 37.87 4.45
773 1038 2.041081 TGTTACAATCCAAGGACCTGGG 59.959 50.000 8.93 8.93 37.06 4.45
774 1039 1.295020 TACAATCCAAGGACCTGGGG 58.705 55.000 15.57 10.48 37.06 4.96
775 1040 0.776080 ACAATCCAAGGACCTGGGGT 60.776 55.000 15.57 4.60 39.44 4.95
786 1051 1.490910 GACCTGGGGTCCTTTCATAGG 59.509 57.143 5.48 0.00 46.19 2.57
787 1052 0.846693 CCTGGGGTCCTTTCATAGGG 59.153 60.000 0.00 0.00 44.86 3.53
794 1059 2.856222 GTCCTTTCATAGGGCTGGATG 58.144 52.381 0.00 0.00 45.74 3.51
795 1060 2.173569 GTCCTTTCATAGGGCTGGATGT 59.826 50.000 0.00 0.00 45.74 3.06
796 1061 2.173356 TCCTTTCATAGGGCTGGATGTG 59.827 50.000 0.00 0.00 44.86 3.21
797 1062 1.952296 CTTTCATAGGGCTGGATGTGC 59.048 52.381 0.00 0.00 0.00 4.57
798 1063 0.918258 TTCATAGGGCTGGATGTGCA 59.082 50.000 0.00 0.00 0.00 4.57
799 1064 0.181114 TCATAGGGCTGGATGTGCAC 59.819 55.000 10.75 10.75 0.00 4.57
800 1065 0.107066 CATAGGGCTGGATGTGCACA 60.107 55.000 24.08 24.08 36.08 4.57
801 1066 0.182061 ATAGGGCTGGATGTGCACAG 59.818 55.000 25.84 12.51 36.08 3.66
805 1070 4.707791 CTGGATGTGCACAGCTCA 57.292 55.556 31.82 25.26 36.50 4.26
806 1071 2.168947 CTGGATGTGCACAGCTCAC 58.831 57.895 31.82 17.63 34.91 3.51
807 1072 0.604511 CTGGATGTGCACAGCTCACA 60.605 55.000 31.82 20.99 46.86 3.58
808 1073 0.886043 TGGATGTGCACAGCTCACAC 60.886 55.000 31.82 16.91 45.83 3.82
809 1074 0.886043 GGATGTGCACAGCTCACACA 60.886 55.000 31.82 13.62 45.83 3.72
810 1075 0.236711 GATGTGCACAGCTCACACAC 59.763 55.000 27.11 6.88 46.23 3.82
811 1076 0.464193 ATGTGCACAGCTCACACACA 60.464 50.000 25.84 11.70 46.23 3.72
812 1077 1.353103 GTGCACAGCTCACACACAC 59.647 57.895 13.17 0.00 34.43 3.82
813 1078 1.078567 TGCACAGCTCACACACACA 60.079 52.632 0.00 0.00 0.00 3.72
814 1079 1.353103 GCACAGCTCACACACACAC 59.647 57.895 0.00 0.00 0.00 3.82
815 1080 1.368345 GCACAGCTCACACACACACA 61.368 55.000 0.00 0.00 0.00 3.72
816 1081 1.085893 CACAGCTCACACACACACAA 58.914 50.000 0.00 0.00 0.00 3.33
817 1082 1.672363 CACAGCTCACACACACACAAT 59.328 47.619 0.00 0.00 0.00 2.71
818 1083 1.672363 ACAGCTCACACACACACAATG 59.328 47.619 0.00 0.00 0.00 2.82
819 1084 0.664761 AGCTCACACACACACAATGC 59.335 50.000 0.00 0.00 0.00 3.56
820 1085 0.381445 GCTCACACACACACAATGCA 59.619 50.000 0.00 0.00 0.00 3.96
821 1086 1.861202 GCTCACACACACACAATGCAC 60.861 52.381 0.00 0.00 0.00 4.57
822 1087 1.401199 CTCACACACACACAATGCACA 59.599 47.619 0.00 0.00 0.00 4.57
823 1088 1.401199 TCACACACACACAATGCACAG 59.599 47.619 0.00 0.00 0.00 3.66
824 1089 0.101040 ACACACACACAATGCACAGC 59.899 50.000 0.00 0.00 0.00 4.40
825 1090 0.100861 CACACACACAATGCACAGCA 59.899 50.000 0.00 0.00 44.86 4.41
826 1091 0.101040 ACACACACAATGCACAGCAC 59.899 50.000 0.00 0.00 43.04 4.40
827 1092 0.595567 CACACACAATGCACAGCACC 60.596 55.000 0.00 0.00 43.04 5.01
828 1093 0.752743 ACACACAATGCACAGCACCT 60.753 50.000 0.00 0.00 43.04 4.00
829 1094 0.386476 CACACAATGCACAGCACCTT 59.614 50.000 0.00 0.00 43.04 3.50
830 1095 0.670162 ACACAATGCACAGCACCTTC 59.330 50.000 0.00 0.00 43.04 3.46
831 1096 0.038892 CACAATGCACAGCACCTTCC 60.039 55.000 0.00 0.00 43.04 3.46
832 1097 0.467844 ACAATGCACAGCACCTTCCA 60.468 50.000 0.00 0.00 43.04 3.53
833 1098 0.675083 CAATGCACAGCACCTTCCAA 59.325 50.000 0.00 0.00 43.04 3.53
834 1099 0.963962 AATGCACAGCACCTTCCAAG 59.036 50.000 0.00 0.00 43.04 3.61
835 1100 0.111061 ATGCACAGCACCTTCCAAGA 59.889 50.000 0.00 0.00 43.04 3.02
836 1101 0.106769 TGCACAGCACCTTCCAAGAA 60.107 50.000 0.00 0.00 31.71 2.52
837 1102 1.032014 GCACAGCACCTTCCAAGAAA 58.968 50.000 0.00 0.00 0.00 2.52
838 1103 1.269257 GCACAGCACCTTCCAAGAAAC 60.269 52.381 0.00 0.00 0.00 2.78
839 1104 2.301346 CACAGCACCTTCCAAGAAACT 58.699 47.619 0.00 0.00 0.00 2.66
840 1105 2.033801 CACAGCACCTTCCAAGAAACTG 59.966 50.000 0.00 0.00 0.00 3.16
841 1106 1.000938 CAGCACCTTCCAAGAAACTGC 60.001 52.381 0.00 0.00 0.00 4.40
842 1107 1.133668 AGCACCTTCCAAGAAACTGCT 60.134 47.619 3.64 3.64 0.00 4.24
843 1108 1.000938 GCACCTTCCAAGAAACTGCTG 60.001 52.381 0.00 0.00 0.00 4.41
844 1109 1.000938 CACCTTCCAAGAAACTGCTGC 60.001 52.381 0.00 0.00 0.00 5.25
845 1110 1.133668 ACCTTCCAAGAAACTGCTGCT 60.134 47.619 0.00 0.00 0.00 4.24
846 1111 1.959282 CCTTCCAAGAAACTGCTGCTT 59.041 47.619 0.00 0.00 0.00 3.91
847 1112 3.149196 CCTTCCAAGAAACTGCTGCTTA 58.851 45.455 0.00 0.00 0.00 3.09
848 1113 3.057946 CCTTCCAAGAAACTGCTGCTTAC 60.058 47.826 0.00 0.00 0.00 2.34
849 1114 3.492102 TCCAAGAAACTGCTGCTTACT 57.508 42.857 0.00 0.00 0.00 2.24
850 1115 3.820557 TCCAAGAAACTGCTGCTTACTT 58.179 40.909 0.00 0.00 0.00 2.24
851 1116 3.565482 TCCAAGAAACTGCTGCTTACTTG 59.435 43.478 0.00 9.30 34.85 3.16
852 1117 3.303406 CAAGAAACTGCTGCTTACTTGC 58.697 45.455 0.00 0.00 0.00 4.01
853 1118 2.575532 AGAAACTGCTGCTTACTTGCA 58.424 42.857 0.00 0.00 41.05 4.08
854 1119 3.152341 AGAAACTGCTGCTTACTTGCAT 58.848 40.909 0.00 0.00 42.48 3.96
855 1120 3.057736 AGAAACTGCTGCTTACTTGCATG 60.058 43.478 0.00 0.00 42.48 4.06
856 1121 0.524862 ACTGCTGCTTACTTGCATGC 59.475 50.000 11.82 11.82 42.48 4.06
857 1122 0.809385 CTGCTGCTTACTTGCATGCT 59.191 50.000 20.33 0.40 42.48 3.79
858 1123 1.201647 CTGCTGCTTACTTGCATGCTT 59.798 47.619 20.33 5.75 42.48 3.91
859 1124 1.068125 TGCTGCTTACTTGCATGCTTG 60.068 47.619 20.33 13.64 42.48 4.01
871 1136 2.105006 CATGCTTGCACTGGTCTACT 57.895 50.000 0.00 0.00 0.00 2.57
872 1137 2.430465 CATGCTTGCACTGGTCTACTT 58.570 47.619 0.00 0.00 0.00 2.24
873 1138 2.169832 TGCTTGCACTGGTCTACTTC 57.830 50.000 0.00 0.00 0.00 3.01
874 1139 1.270839 TGCTTGCACTGGTCTACTTCC 60.271 52.381 0.00 0.00 0.00 3.46
875 1140 1.714794 CTTGCACTGGTCTACTTCCG 58.285 55.000 0.00 0.00 0.00 4.30
876 1141 0.320374 TTGCACTGGTCTACTTCCGG 59.680 55.000 0.00 0.00 37.36 5.14
877 1142 0.830444 TGCACTGGTCTACTTCCGGT 60.830 55.000 0.00 0.00 44.36 5.28
878 1143 0.108756 GCACTGGTCTACTTCCGGTC 60.109 60.000 0.00 0.00 41.97 4.79
879 1144 1.254026 CACTGGTCTACTTCCGGTCA 58.746 55.000 0.00 0.00 41.97 4.02
880 1145 1.616865 CACTGGTCTACTTCCGGTCAA 59.383 52.381 0.00 0.00 41.97 3.18
881 1146 1.617357 ACTGGTCTACTTCCGGTCAAC 59.383 52.381 0.00 0.00 40.09 3.18
882 1147 1.893801 CTGGTCTACTTCCGGTCAACT 59.106 52.381 0.00 0.00 0.00 3.16
883 1148 2.299297 CTGGTCTACTTCCGGTCAACTT 59.701 50.000 0.00 0.00 0.00 2.66
884 1149 2.036733 TGGTCTACTTCCGGTCAACTTG 59.963 50.000 0.00 0.00 0.00 3.16
885 1150 2.067013 GTCTACTTCCGGTCAACTTGC 58.933 52.381 0.00 0.00 0.00 4.01
886 1151 1.968493 TCTACTTCCGGTCAACTTGCT 59.032 47.619 0.00 0.00 0.00 3.91
887 1152 2.367567 TCTACTTCCGGTCAACTTGCTT 59.632 45.455 0.00 0.00 0.00 3.91
888 1153 2.922740 ACTTCCGGTCAACTTGCTTA 57.077 45.000 0.00 0.00 0.00 3.09
889 1154 2.490991 ACTTCCGGTCAACTTGCTTAC 58.509 47.619 0.00 0.00 0.00 2.34
890 1155 1.804748 CTTCCGGTCAACTTGCTTACC 59.195 52.381 0.00 0.00 0.00 2.85
891 1156 0.759959 TCCGGTCAACTTGCTTACCA 59.240 50.000 0.00 0.00 32.04 3.25
892 1157 0.872388 CCGGTCAACTTGCTTACCAC 59.128 55.000 0.00 0.00 32.04 4.16
893 1158 0.872388 CGGTCAACTTGCTTACCACC 59.128 55.000 0.00 0.00 32.04 4.61
894 1159 1.542547 CGGTCAACTTGCTTACCACCT 60.543 52.381 0.00 0.00 32.04 4.00
895 1160 2.289195 CGGTCAACTTGCTTACCACCTA 60.289 50.000 0.00 0.00 32.04 3.08
896 1161 3.746940 GGTCAACTTGCTTACCACCTAA 58.253 45.455 0.00 0.00 32.04 2.69
897 1162 3.751698 GGTCAACTTGCTTACCACCTAAG 59.248 47.826 0.00 0.00 35.74 2.18
907 1172 2.881111 ACCACCTAAGCTTTCCTTCC 57.119 50.000 3.20 0.00 34.95 3.46
908 1173 2.062636 ACCACCTAAGCTTTCCTTCCA 58.937 47.619 3.20 0.00 34.95 3.53
909 1174 2.649816 ACCACCTAAGCTTTCCTTCCAT 59.350 45.455 3.20 0.00 34.95 3.41
910 1175 3.076032 ACCACCTAAGCTTTCCTTCCATT 59.924 43.478 3.20 0.00 34.95 3.16
911 1176 3.445096 CCACCTAAGCTTTCCTTCCATTG 59.555 47.826 3.20 0.00 34.95 2.82
912 1177 3.092301 ACCTAAGCTTTCCTTCCATTGC 58.908 45.455 3.20 0.00 34.95 3.56
913 1178 3.245407 ACCTAAGCTTTCCTTCCATTGCT 60.245 43.478 3.20 0.00 34.95 3.91
914 1179 3.766051 CCTAAGCTTTCCTTCCATTGCTT 59.234 43.478 3.20 0.00 42.36 3.91
915 1180 3.672767 AAGCTTTCCTTCCATTGCTTG 57.327 42.857 0.00 0.00 38.98 4.01
925 1190 2.877975 CATTGCTTGGAGACAGGGG 58.122 57.895 0.00 0.00 44.54 4.79
926 1191 0.038744 CATTGCTTGGAGACAGGGGT 59.961 55.000 0.00 0.00 44.54 4.95
927 1192 0.038744 ATTGCTTGGAGACAGGGGTG 59.961 55.000 0.00 0.00 44.54 4.61
928 1193 1.059584 TTGCTTGGAGACAGGGGTGA 61.060 55.000 0.00 0.00 44.54 4.02
929 1194 1.059584 TGCTTGGAGACAGGGGTGAA 61.060 55.000 0.00 0.00 44.54 3.18
930 1195 0.322008 GCTTGGAGACAGGGGTGAAG 60.322 60.000 0.00 0.00 44.54 3.02
931 1196 0.322008 CTTGGAGACAGGGGTGAAGC 60.322 60.000 0.00 0.00 44.54 3.86
932 1197 1.779061 TTGGAGACAGGGGTGAAGCC 61.779 60.000 0.00 0.00 44.54 4.35
947 1212 2.439156 GCCCACATCTGCCACTCC 60.439 66.667 0.00 0.00 0.00 3.85
965 1230 1.455383 CCAACCAAAACGGCTGCTCT 61.455 55.000 0.00 0.00 39.03 4.09
967 1232 2.075426 AACCAAAACGGCTGCTCTGC 62.075 55.000 0.00 0.00 39.03 4.26
970 1235 0.662374 CAAAACGGCTGCTCTGCTTG 60.662 55.000 0.00 0.00 0.00 4.01
977 1242 3.475192 TGCTCTGCTTGCAGGAGA 58.525 55.556 20.62 3.62 40.52 3.71
991 1256 3.010027 TGCAGGAGAGAAAGAGAGAGAGA 59.990 47.826 0.00 0.00 0.00 3.10
1017 1282 4.151121 TGAAGATGAAATGGCCTGTCAAA 58.849 39.130 3.32 0.00 0.00 2.69
1019 1284 4.525912 AGATGAAATGGCCTGTCAAAAC 57.474 40.909 3.32 1.89 0.00 2.43
1021 1286 1.339610 TGAAATGGCCTGTCAAAACGG 59.660 47.619 3.32 0.00 0.00 4.44
1040 1677 1.134965 GGCTGATCTGAGCTACAACGT 60.135 52.381 3.42 0.00 39.11 3.99
1041 1678 1.923204 GCTGATCTGAGCTACAACGTG 59.077 52.381 3.42 0.00 35.95 4.49
1042 1679 2.534298 CTGATCTGAGCTACAACGTGG 58.466 52.381 0.00 0.00 0.00 4.94
1043 1680 1.281899 GATCTGAGCTACAACGTGGC 58.718 55.000 0.00 0.00 40.33 5.01
1048 1685 4.988065 GCTACAACGTGGCTGAGA 57.012 55.556 0.00 0.00 37.08 3.27
1127 2592 3.798202 ACCTTTCACACAACTCTCTGAC 58.202 45.455 0.00 0.00 0.00 3.51
1161 2626 1.388837 GCAACTGGGTTCCACCGTTT 61.389 55.000 0.00 0.00 39.83 3.60
1165 2630 1.071228 ACTGGGTTCCACCGTTTAGAC 59.929 52.381 0.00 0.00 39.83 2.59
1205 2670 0.251916 TCATGTAACTTGGGCCCTCG 59.748 55.000 25.70 16.39 0.00 4.63
1244 2709 2.872408 GGCAAGCTGGCATAACTCA 58.128 52.632 16.69 0.00 43.14 3.41
1324 2789 4.077300 TCTTCTCATGCTTCAGTGTTGT 57.923 40.909 0.00 0.00 0.00 3.32
1325 2790 5.213891 TCTTCTCATGCTTCAGTGTTGTA 57.786 39.130 0.00 0.00 0.00 2.41
1326 2791 4.991056 TCTTCTCATGCTTCAGTGTTGTAC 59.009 41.667 0.00 0.00 0.00 2.90
1327 2792 4.607293 TCTCATGCTTCAGTGTTGTACT 57.393 40.909 0.00 0.00 41.36 2.73
1451 2916 0.392193 AGCAAATCTCACAGCTCCGG 60.392 55.000 0.00 0.00 30.05 5.14
1457 2922 1.025113 TCTCACAGCTCCGGTACTCG 61.025 60.000 0.00 0.00 38.88 4.18
1458 2923 1.303074 TCACAGCTCCGGTACTCGT 60.303 57.895 0.00 0.00 37.11 4.18
1502 2967 3.576982 TCATATCGAAGGTACCATCCCAC 59.423 47.826 15.94 0.00 0.00 4.61
1530 2995 9.932207 ATATGTGTGTCAATTGAATCATTTGTT 57.068 25.926 10.35 1.22 0.00 2.83
1568 3033 2.042162 AGCAATCAACTGACAGGGGATT 59.958 45.455 14.58 14.58 0.00 3.01
1665 3139 9.355215 GTCGATTCTAGACTTGAAGAATAACAA 57.645 33.333 0.00 0.00 41.40 2.83
1675 3149 5.689383 TGAAGAATAACAAGTTGTCAGGC 57.311 39.130 9.40 0.11 0.00 4.85
1687 3161 1.909700 TGTCAGGCAAATTCCCAGAC 58.090 50.000 11.43 11.43 34.28 3.51
1742 3216 1.062002 ACCTTTCGCGCAATGTATTCG 59.938 47.619 8.75 0.00 0.00 3.34
1793 3267 2.887151 AATGCCAAGCCTAGAAGTGT 57.113 45.000 0.00 0.00 0.00 3.55
1822 3296 4.271696 ACGATCAAACATGTTCTCTGGA 57.728 40.909 12.39 5.54 0.00 3.86
1841 3315 2.427506 GACACCTTCCTAGGCAGTTTG 58.572 52.381 2.96 4.85 46.22 2.93
1916 3390 4.354208 AGGATACCTTCTTCTCTTGGGA 57.646 45.455 0.00 0.00 37.17 4.37
1974 3448 6.253512 CGAAGGAAGCAAAAATAATTACAGCC 59.746 38.462 0.00 0.00 0.00 4.85
2070 3544 5.237815 TGATTGACCTGTCATGTAACAGTC 58.762 41.667 12.20 10.24 44.22 3.51
2284 3758 5.235850 TGGCTAAACTTGTCCTACAATGA 57.764 39.130 0.00 0.00 37.48 2.57
2338 3819 4.510711 GCTACAGACACTCAATGATCCATG 59.489 45.833 0.00 0.00 0.00 3.66
2379 3860 2.363018 TCTGTGGGCCTCCTCTCG 60.363 66.667 4.53 0.00 0.00 4.04
2474 3958 1.544724 TGTTCCTTGGCATAAGCACC 58.455 50.000 0.00 0.00 44.61 5.01
2475 3959 1.075374 TGTTCCTTGGCATAAGCACCT 59.925 47.619 0.00 0.00 44.61 4.00
2476 3960 2.307392 TGTTCCTTGGCATAAGCACCTA 59.693 45.455 0.00 0.00 44.61 3.08
2477 3961 3.245087 TGTTCCTTGGCATAAGCACCTAA 60.245 43.478 0.00 0.00 44.61 2.69
2478 3962 3.951563 TCCTTGGCATAAGCACCTAAT 57.048 42.857 0.00 0.00 44.61 1.73
2479 3963 3.554934 TCCTTGGCATAAGCACCTAATG 58.445 45.455 0.00 0.00 44.61 1.90
2482 3966 5.073008 TCCTTGGCATAAGCACCTAATGATA 59.927 40.000 0.00 0.00 44.61 2.15
2485 3969 5.879763 TGGCATAAGCACCTAATGATACAT 58.120 37.500 0.00 0.00 44.61 2.29
2486 3970 7.014988 TGGCATAAGCACCTAATGATACATA 57.985 36.000 0.00 0.00 44.61 2.29
2487 3971 7.632861 TGGCATAAGCACCTAATGATACATAT 58.367 34.615 0.00 0.00 44.61 1.78
2488 3972 8.108999 TGGCATAAGCACCTAATGATACATATT 58.891 33.333 0.00 0.00 44.61 1.28
2496 4100 9.502091 GCACCTAATGATACATATTTGGTAAGA 57.498 33.333 0.00 0.00 40.17 2.10
2504 4108 9.825109 TGATACATATTTGGTAAGAAACATCGA 57.175 29.630 0.00 0.00 0.00 3.59
2509 4113 5.427036 TTTGGTAAGAAACATCGAACACC 57.573 39.130 0.00 0.00 0.00 4.16
2516 4120 1.909700 AACATCGAACACCAGGCATT 58.090 45.000 0.00 0.00 0.00 3.56
2517 4121 1.167851 ACATCGAACACCAGGCATTG 58.832 50.000 0.00 0.00 0.00 2.82
2521 4125 0.238289 CGAACACCAGGCATTGTGTC 59.762 55.000 8.78 2.53 44.53 3.67
2533 4137 4.892934 AGGCATTGTGTCAAGGTTTTCTTA 59.107 37.500 0.00 0.00 33.68 2.10
2547 4153 1.975660 TTCTTACACTGCACAACCCC 58.024 50.000 0.00 0.00 0.00 4.95
2554 4160 0.328258 ACTGCACAACCCCTGGATAC 59.672 55.000 0.00 0.00 0.00 2.24
2624 7633 6.148645 TCAATAGAGAAGTTGTTTAATGCGCA 59.851 34.615 14.96 14.96 0.00 6.09
2832 8049 1.546476 AGGTAGCATAGCATAGACCGC 59.454 52.381 0.00 0.00 42.67 5.68
2851 10628 0.392998 CACCGTTTGCCTGGATAGCT 60.393 55.000 0.00 0.00 0.00 3.32
2852 10629 1.134521 CACCGTTTGCCTGGATAGCTA 60.135 52.381 0.00 0.00 0.00 3.32
2912 10735 2.942648 GAAGCTATCACCGTGGCCCC 62.943 65.000 0.00 0.00 0.00 5.80
2913 10736 3.792736 GCTATCACCGTGGCCCCA 61.793 66.667 0.00 0.00 0.00 4.96
2914 10737 3.120086 GCTATCACCGTGGCCCCAT 62.120 63.158 0.00 0.00 0.00 4.00
2935 10758 3.842126 CTCCATCACGCACGCACG 61.842 66.667 0.00 0.00 39.50 5.34
2955 10782 4.602259 CACACTCACACCCGGCGT 62.602 66.667 6.01 0.00 0.00 5.68
2978 10805 2.697425 CCGCAGTTTCTCATCGCG 59.303 61.111 0.00 0.00 45.25 5.87
3093 10975 0.321298 ATCCACCGTGCACTGTTACC 60.321 55.000 16.19 0.00 0.00 2.85
3104 10986 6.019152 CGTGCACTGTTACCAATGTAATTAC 58.981 40.000 16.19 8.75 39.08 1.89
3128 11014 2.581354 GCCACGGAGCTCTGTCAT 59.419 61.111 25.57 1.20 32.07 3.06
3196 11452 4.319133 CCCACGGACAGAAATGGG 57.681 61.111 0.00 0.00 45.79 4.00
3198 11454 1.378514 CCACGGACAGAAATGGGGG 60.379 63.158 0.00 0.00 0.00 5.40
3216 11480 3.595758 GCAAGGCACGGCACTGTT 61.596 61.111 0.00 0.00 33.90 3.16
3217 11481 3.119193 CAAGGCACGGCACTGTTT 58.881 55.556 0.00 0.00 0.00 2.83
3228 11492 2.123897 ACTGTTTGCCGGTGCCTT 60.124 55.556 1.90 0.00 36.33 4.35
3229 11493 2.336088 CTGTTTGCCGGTGCCTTG 59.664 61.111 1.90 0.00 36.33 3.61
3230 11494 3.211564 CTGTTTGCCGGTGCCTTGG 62.212 63.158 1.90 0.00 36.33 3.61
3236 11500 4.335647 CCGGTGCCTTGGCTCTGT 62.336 66.667 17.77 0.00 0.00 3.41
3237 11501 2.743928 CGGTGCCTTGGCTCTGTC 60.744 66.667 13.18 0.00 0.00 3.51
3240 11504 1.239968 GGTGCCTTGGCTCTGTCAAG 61.240 60.000 13.18 5.07 43.90 3.02
3248 11512 1.372683 GCTCTGTCAAGGCACTGGA 59.627 57.895 0.00 0.00 40.86 3.86
3249 11513 0.035630 GCTCTGTCAAGGCACTGGAT 60.036 55.000 0.00 0.00 42.38 3.41
3250 11514 2.011046 GCTCTGTCAAGGCACTGGATC 61.011 57.143 0.00 0.00 42.38 3.36
3251 11515 1.554160 CTCTGTCAAGGCACTGGATCT 59.446 52.381 0.00 0.00 42.38 2.75
3252 11516 1.552337 TCTGTCAAGGCACTGGATCTC 59.448 52.381 0.00 0.00 42.38 2.75
3253 11517 1.277273 CTGTCAAGGCACTGGATCTCA 59.723 52.381 0.00 0.00 42.38 3.27
3254 11518 1.699083 TGTCAAGGCACTGGATCTCAA 59.301 47.619 0.00 0.00 42.38 3.02
3359 11745 1.227999 CGTGTGGGCGTGTTGATTCT 61.228 55.000 0.00 0.00 0.00 2.40
3367 11753 1.225854 GTGTTGATTCTGCGAGCGC 60.226 57.895 8.08 8.08 42.35 5.92
3469 11855 0.567968 CGATCGACGTGAATGTCTGC 59.432 55.000 10.26 0.00 36.71 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.595310 GCCTCGATCCTCTAACGTGC 60.595 60.000 0.00 0.00 0.00 5.34
1 2 0.738975 TGCCTCGATCCTCTAACGTG 59.261 55.000 0.00 0.00 0.00 4.49
3 4 2.339728 GATGCCTCGATCCTCTAACG 57.660 55.000 0.00 0.00 0.00 3.18
26 27 4.012895 GTCAAGCACCGTGGCGTG 62.013 66.667 0.00 5.37 43.33 5.34
29 30 4.980805 TCCGTCAAGCACCGTGGC 62.981 66.667 0.00 0.00 0.00 5.01
30 31 1.234615 AATTCCGTCAAGCACCGTGG 61.235 55.000 0.00 0.00 0.00 4.94
31 32 0.165944 GAATTCCGTCAAGCACCGTG 59.834 55.000 0.00 0.00 0.00 4.94
32 33 1.289109 CGAATTCCGTCAAGCACCGT 61.289 55.000 0.00 0.00 0.00 4.83
33 34 1.011968 TCGAATTCCGTCAAGCACCG 61.012 55.000 0.00 0.00 39.75 4.94
34 35 0.442699 GTCGAATTCCGTCAAGCACC 59.557 55.000 0.00 0.00 39.75 5.01
35 36 0.442699 GGTCGAATTCCGTCAAGCAC 59.557 55.000 0.00 0.00 39.75 4.40
36 37 1.011968 CGGTCGAATTCCGTCAAGCA 61.012 55.000 4.86 0.00 42.62 3.91
37 38 0.734942 TCGGTCGAATTCCGTCAAGC 60.735 55.000 12.10 0.00 46.86 4.01
38 39 0.989890 GTCGGTCGAATTCCGTCAAG 59.010 55.000 12.10 0.00 46.86 3.02
39 40 0.730155 CGTCGGTCGAATTCCGTCAA 60.730 55.000 12.10 0.00 46.86 3.18
40 41 1.154169 CGTCGGTCGAATTCCGTCA 60.154 57.895 12.10 0.00 46.86 4.35
41 42 2.502965 GCGTCGGTCGAATTCCGTC 61.503 63.158 12.10 6.50 46.86 4.79
42 43 2.482296 AAGCGTCGGTCGAATTCCGT 62.482 55.000 12.10 0.00 46.86 4.69
89 90 3.061205 GCTTGTACAGTTTCGCTTTTTGC 60.061 43.478 0.00 0.00 38.57 3.68
91 92 3.359654 CGCTTGTACAGTTTCGCTTTTT 58.640 40.909 0.00 0.00 0.00 1.94
92 93 2.853281 GCGCTTGTACAGTTTCGCTTTT 60.853 45.455 18.88 0.00 39.51 2.27
123 124 2.860817 TCCTTTTATCGGGAGAGGGA 57.139 50.000 0.00 0.00 45.48 4.20
127 128 1.420138 GGGCATCCTTTTATCGGGAGA 59.580 52.381 0.00 0.00 46.90 3.71
128 129 1.421646 AGGGCATCCTTTTATCGGGAG 59.578 52.381 0.00 0.00 41.56 4.30
140 141 2.597903 GGACTGGGAAGGGCATCC 59.402 66.667 0.17 0.17 38.86 3.51
141 142 2.597903 GGGACTGGGAAGGGCATC 59.402 66.667 0.00 0.00 0.00 3.91
142 143 3.023735 GGGGACTGGGAAGGGCAT 61.024 66.667 0.00 0.00 0.00 4.40
173 174 3.828694 TAACGTTGGGCCCCACACG 62.829 63.158 28.01 28.01 40.75 4.49
175 176 2.113562 GTAACGTTGGGCCCCACA 59.886 61.111 24.87 3.53 30.78 4.17
185 186 4.644230 TGGACGGCGCGTAACGTT 62.644 61.111 22.02 5.88 44.24 3.99
200 201 0.997226 CGAGAAGACGTCACGTGTGG 60.997 60.000 19.50 11.05 41.37 4.17
205 206 2.504244 GGCCGAGAAGACGTCACG 60.504 66.667 19.50 16.20 39.72 4.35
206 207 2.504244 CGGCCGAGAAGACGTCAC 60.504 66.667 24.07 11.35 0.00 3.67
333 378 6.385766 AGAGAAGAAGATGAAAACCCAGAT 57.614 37.500 0.00 0.00 0.00 2.90
346 391 6.774656 AGAATGCAAAAAGGAAGAGAAGAAGA 59.225 34.615 0.00 0.00 0.00 2.87
350 395 5.476254 AGGAGAATGCAAAAAGGAAGAGAAG 59.524 40.000 0.00 0.00 0.00 2.85
417 489 8.248945 CCAGCTTTCAACTGAAATATTTGATCT 58.751 33.333 5.17 0.00 42.44 2.75
429 501 2.806745 CGAGAACCCAGCTTTCAACTGA 60.807 50.000 0.00 0.00 37.32 3.41
440 512 0.818296 AGAATCGACCGAGAACCCAG 59.182 55.000 0.00 0.00 0.00 4.45
443 515 2.649331 TGAAGAATCGACCGAGAACC 57.351 50.000 0.00 0.00 0.00 3.62
447 519 1.333931 TCGGATGAAGAATCGACCGAG 59.666 52.381 5.53 0.00 44.62 4.63
473 545 6.865205 AGATTAATGCTTTGTCAACTTTCAGC 59.135 34.615 0.00 0.12 0.00 4.26
489 561 2.796032 GCACGCCCAAGAAGATTAATGC 60.796 50.000 0.00 0.00 0.00 3.56
495 567 2.436646 CCGCACGCCCAAGAAGAT 60.437 61.111 0.00 0.00 0.00 2.40
496 568 3.621805 TCCGCACGCCCAAGAAGA 61.622 61.111 0.00 0.00 0.00 2.87
497 569 3.423154 GTCCGCACGCCCAAGAAG 61.423 66.667 0.00 0.00 0.00 2.85
498 570 2.951475 AAAGTCCGCACGCCCAAGAA 62.951 55.000 0.00 0.00 0.00 2.52
499 571 3.469863 AAAGTCCGCACGCCCAAGA 62.470 57.895 0.00 0.00 0.00 3.02
500 572 2.966309 GAAAGTCCGCACGCCCAAG 61.966 63.158 0.00 0.00 0.00 3.61
501 573 2.975799 GAAAGTCCGCACGCCCAA 60.976 61.111 0.00 0.00 0.00 4.12
517 765 3.532501 TGTGGAGTCTGCACACGA 58.467 55.556 21.91 0.96 43.78 4.35
531 779 3.374745 GACACAAGCTTTTGGTGATGTG 58.625 45.455 19.11 14.14 42.78 3.21
544 792 3.988379 TTCAACTGATTGGACACAAGC 57.012 42.857 0.00 0.00 43.09 4.01
545 793 4.082571 GGGATTCAACTGATTGGACACAAG 60.083 45.833 0.00 0.00 40.49 3.16
546 794 3.826157 GGGATTCAACTGATTGGACACAA 59.174 43.478 0.00 0.00 41.59 3.33
548 796 3.420893 TGGGATTCAACTGATTGGACAC 58.579 45.455 0.00 0.00 36.39 3.67
549 797 3.805066 TGGGATTCAACTGATTGGACA 57.195 42.857 0.00 0.00 36.39 4.02
550 798 4.276926 GCTATGGGATTCAACTGATTGGAC 59.723 45.833 0.00 0.00 36.39 4.02
551 799 4.166725 AGCTATGGGATTCAACTGATTGGA 59.833 41.667 0.00 0.00 36.39 3.53
552 800 4.467769 AGCTATGGGATTCAACTGATTGG 58.532 43.478 0.00 0.00 36.39 3.16
572 837 2.236766 TGGGCTAACGGTAGATAGAGC 58.763 52.381 12.83 0.00 0.00 4.09
584 849 3.049708 AGTCCGTAGTTTTGGGCTAAC 57.950 47.619 0.00 0.00 38.76 2.34
585 850 3.834231 ACTAGTCCGTAGTTTTGGGCTAA 59.166 43.478 0.00 0.00 41.65 3.09
587 852 2.233186 GACTAGTCCGTAGTTTTGGGCT 59.767 50.000 12.13 0.00 42.48 5.19
588 853 2.028748 TGACTAGTCCGTAGTTTTGGGC 60.029 50.000 20.11 0.00 42.48 5.36
589 854 3.257624 ACTGACTAGTCCGTAGTTTTGGG 59.742 47.826 20.11 0.00 42.48 4.12
590 855 4.516365 ACTGACTAGTCCGTAGTTTTGG 57.484 45.455 20.11 0.97 42.48 3.28
596 861 5.016051 TGGTACTACTGACTAGTCCGTAG 57.984 47.826 34.70 34.70 46.26 3.51
597 862 4.711846 TCTGGTACTACTGACTAGTCCGTA 59.288 45.833 21.46 21.46 36.95 4.02
598 863 3.517100 TCTGGTACTACTGACTAGTCCGT 59.483 47.826 21.52 21.52 36.95 4.69
599 864 3.870419 GTCTGGTACTACTGACTAGTCCG 59.130 52.174 20.11 16.08 36.95 4.79
601 866 5.732633 TCAGTCTGGTACTACTGACTAGTC 58.267 45.833 16.32 16.32 44.53 2.59
603 868 6.408035 TCTTCAGTCTGGTACTACTGACTAG 58.592 44.000 19.17 16.03 46.10 2.57
604 869 6.370186 TCTTCAGTCTGGTACTACTGACTA 57.630 41.667 19.17 11.43 46.10 2.59
605 870 5.244189 TCTTCAGTCTGGTACTACTGACT 57.756 43.478 19.17 13.03 46.10 3.41
606 871 5.961396 TTCTTCAGTCTGGTACTACTGAC 57.039 43.478 19.17 11.42 46.10 3.51
607 872 6.304624 TCTTTCTTCAGTCTGGTACTACTGA 58.695 40.000 16.90 16.90 45.30 3.41
608 873 6.576662 TCTTTCTTCAGTCTGGTACTACTG 57.423 41.667 13.84 13.84 41.87 2.74
610 875 5.047943 TGCTCTTTCTTCAGTCTGGTACTAC 60.048 44.000 0.00 0.00 35.76 2.73
612 877 3.898123 TGCTCTTTCTTCAGTCTGGTACT 59.102 43.478 0.00 0.00 39.81 2.73
613 878 4.021894 TCTGCTCTTTCTTCAGTCTGGTAC 60.022 45.833 0.00 0.00 0.00 3.34
616 881 3.006752 ACTCTGCTCTTTCTTCAGTCTGG 59.993 47.826 0.00 0.00 0.00 3.86
618 883 5.951747 AGATACTCTGCTCTTTCTTCAGTCT 59.048 40.000 0.00 0.00 0.00 3.24
619 884 6.035843 CAGATACTCTGCTCTTTCTTCAGTC 58.964 44.000 0.00 0.00 37.72 3.51
620 885 5.105392 CCAGATACTCTGCTCTTTCTTCAGT 60.105 44.000 0.00 0.00 42.98 3.41
622 887 5.019470 TCCAGATACTCTGCTCTTTCTTCA 58.981 41.667 0.00 0.00 42.98 3.02
623 888 5.348164 GTCCAGATACTCTGCTCTTTCTTC 58.652 45.833 0.00 0.00 42.98 2.87
624 889 4.142271 CGTCCAGATACTCTGCTCTTTCTT 60.142 45.833 0.00 0.00 42.98 2.52
625 890 3.380004 CGTCCAGATACTCTGCTCTTTCT 59.620 47.826 0.00 0.00 42.98 2.52
626 891 3.378742 TCGTCCAGATACTCTGCTCTTTC 59.621 47.826 0.00 0.00 42.98 2.62
627 892 3.357203 TCGTCCAGATACTCTGCTCTTT 58.643 45.455 0.00 0.00 42.98 2.52
628 893 2.948979 CTCGTCCAGATACTCTGCTCTT 59.051 50.000 0.00 0.00 42.98 2.85
629 894 2.571212 CTCGTCCAGATACTCTGCTCT 58.429 52.381 0.00 0.00 42.98 4.09
630 895 1.606668 CCTCGTCCAGATACTCTGCTC 59.393 57.143 0.00 0.00 42.98 4.26
632 897 1.681538 TCCTCGTCCAGATACTCTGC 58.318 55.000 0.00 0.00 42.98 4.26
636 901 3.586470 AGTGATCCTCGTCCAGATACT 57.414 47.619 0.00 0.00 0.00 2.12
637 902 3.189702 GCTAGTGATCCTCGTCCAGATAC 59.810 52.174 0.00 0.00 0.00 2.24
638 903 3.181443 TGCTAGTGATCCTCGTCCAGATA 60.181 47.826 0.00 0.00 0.00 1.98
640 905 1.064685 TGCTAGTGATCCTCGTCCAGA 60.065 52.381 0.00 0.00 0.00 3.86
641 906 1.066303 GTGCTAGTGATCCTCGTCCAG 59.934 57.143 0.00 0.00 0.00 3.86
642 907 1.103803 GTGCTAGTGATCCTCGTCCA 58.896 55.000 0.00 0.00 0.00 4.02
643 908 0.029567 CGTGCTAGTGATCCTCGTCC 59.970 60.000 0.00 0.00 0.00 4.79
644 909 1.003331 CTCGTGCTAGTGATCCTCGTC 60.003 57.143 0.00 0.00 0.00 4.20
646 911 0.317436 GCTCGTGCTAGTGATCCTCG 60.317 60.000 1.41 0.00 36.03 4.63
649 914 0.457851 AGTGCTCGTGCTAGTGATCC 59.542 55.000 11.19 0.00 40.48 3.36
650 915 2.856720 GCTAGTGCTCGTGCTAGTGATC 60.857 54.545 11.19 0.00 40.48 2.92
651 916 1.066303 GCTAGTGCTCGTGCTAGTGAT 59.934 52.381 11.19 0.00 40.48 3.06
652 917 0.452184 GCTAGTGCTCGTGCTAGTGA 59.548 55.000 11.19 0.00 40.48 3.41
653 918 0.171231 TGCTAGTGCTCGTGCTAGTG 59.829 55.000 11.19 0.56 40.48 2.74
655 920 1.554392 CTTGCTAGTGCTCGTGCTAG 58.446 55.000 11.19 6.24 40.48 3.42
656 921 0.458543 GCTTGCTAGTGCTCGTGCTA 60.459 55.000 11.19 0.00 40.48 3.49
657 922 1.739562 GCTTGCTAGTGCTCGTGCT 60.740 57.895 11.19 0.00 40.48 4.40
658 923 2.029288 TGCTTGCTAGTGCTCGTGC 61.029 57.895 1.71 1.71 40.48 5.34
659 924 0.945743 TGTGCTTGCTAGTGCTCGTG 60.946 55.000 0.00 0.00 40.48 4.35
661 926 0.945743 TGTGTGCTTGCTAGTGCTCG 60.946 55.000 0.00 0.00 40.48 5.03
662 927 0.514691 GTGTGTGCTTGCTAGTGCTC 59.485 55.000 0.00 0.00 40.48 4.26
663 928 0.179048 TGTGTGTGCTTGCTAGTGCT 60.179 50.000 0.00 0.00 40.48 4.40
664 929 0.040958 GTGTGTGTGCTTGCTAGTGC 60.041 55.000 0.00 0.00 40.20 4.40
665 930 1.528586 GAGTGTGTGTGCTTGCTAGTG 59.471 52.381 0.00 0.00 0.00 2.74
666 931 1.138859 TGAGTGTGTGTGCTTGCTAGT 59.861 47.619 0.00 0.00 0.00 2.57
667 932 1.528586 GTGAGTGTGTGTGCTTGCTAG 59.471 52.381 0.00 0.00 0.00 3.42
668 933 1.134551 TGTGAGTGTGTGTGCTTGCTA 60.135 47.619 0.00 0.00 0.00 3.49
669 934 0.392863 TGTGAGTGTGTGTGCTTGCT 60.393 50.000 0.00 0.00 0.00 3.91
670 935 0.664761 ATGTGAGTGTGTGTGCTTGC 59.335 50.000 0.00 0.00 0.00 4.01
671 936 3.133691 AGTATGTGAGTGTGTGTGCTTG 58.866 45.455 0.00 0.00 0.00 4.01
672 937 3.475566 AGTATGTGAGTGTGTGTGCTT 57.524 42.857 0.00 0.00 0.00 3.91
673 938 3.615110 GCTAGTATGTGAGTGTGTGTGCT 60.615 47.826 0.00 0.00 0.00 4.40
674 939 2.668457 GCTAGTATGTGAGTGTGTGTGC 59.332 50.000 0.00 0.00 0.00 4.57
675 940 3.254060 GGCTAGTATGTGAGTGTGTGTG 58.746 50.000 0.00 0.00 0.00 3.82
676 941 2.897326 TGGCTAGTATGTGAGTGTGTGT 59.103 45.455 0.00 0.00 0.00 3.72
677 942 3.515630 CTGGCTAGTATGTGAGTGTGTG 58.484 50.000 0.00 0.00 0.00 3.82
678 943 2.497675 CCTGGCTAGTATGTGAGTGTGT 59.502 50.000 0.00 0.00 0.00 3.72
679 944 2.760650 TCCTGGCTAGTATGTGAGTGTG 59.239 50.000 0.00 0.00 0.00 3.82
680 945 3.027412 CTCCTGGCTAGTATGTGAGTGT 58.973 50.000 0.00 0.00 0.00 3.55
681 946 3.067461 GTCTCCTGGCTAGTATGTGAGTG 59.933 52.174 0.00 0.00 0.00 3.51
682 947 3.292460 GTCTCCTGGCTAGTATGTGAGT 58.708 50.000 0.00 0.00 0.00 3.41
683 948 3.067461 GTGTCTCCTGGCTAGTATGTGAG 59.933 52.174 0.00 0.00 0.00 3.51
684 949 3.024547 GTGTCTCCTGGCTAGTATGTGA 58.975 50.000 0.00 0.00 0.00 3.58
685 950 2.223595 CGTGTCTCCTGGCTAGTATGTG 60.224 54.545 0.00 0.00 0.00 3.21
686 951 2.025155 CGTGTCTCCTGGCTAGTATGT 58.975 52.381 0.00 0.00 0.00 2.29
687 952 1.338337 CCGTGTCTCCTGGCTAGTATG 59.662 57.143 0.00 0.00 0.00 2.39
688 953 1.063867 ACCGTGTCTCCTGGCTAGTAT 60.064 52.381 0.00 0.00 0.00 2.12
689 954 0.330604 ACCGTGTCTCCTGGCTAGTA 59.669 55.000 0.00 0.00 0.00 1.82
690 955 1.076906 ACCGTGTCTCCTGGCTAGT 59.923 57.895 0.00 0.00 0.00 2.57
691 956 1.513158 CACCGTGTCTCCTGGCTAG 59.487 63.158 0.00 0.00 0.00 3.42
692 957 1.982395 CCACCGTGTCTCCTGGCTA 60.982 63.158 0.00 0.00 0.00 3.93
693 958 3.314331 CCACCGTGTCTCCTGGCT 61.314 66.667 0.00 0.00 0.00 4.75
695 960 3.625897 TGCCACCGTGTCTCCTGG 61.626 66.667 0.00 0.00 0.00 4.45
696 961 2.357517 GTGCCACCGTGTCTCCTG 60.358 66.667 0.00 0.00 0.00 3.86
697 962 3.626924 GGTGCCACCGTGTCTCCT 61.627 66.667 0.00 0.00 0.00 3.69
698 963 3.936203 TGGTGCCACCGTGTCTCC 61.936 66.667 9.78 0.00 42.58 3.71
699 964 2.665185 GTGGTGCCACCGTGTCTC 60.665 66.667 9.78 0.00 42.58 3.36
714 979 5.675575 GCAAATCATTCAGCTTCCACTAGTG 60.676 44.000 16.34 16.34 0.00 2.74
715 980 4.397417 GCAAATCATTCAGCTTCCACTAGT 59.603 41.667 0.00 0.00 0.00 2.57
716 981 4.639310 AGCAAATCATTCAGCTTCCACTAG 59.361 41.667 0.00 0.00 32.52 2.57
717 982 4.592942 AGCAAATCATTCAGCTTCCACTA 58.407 39.130 0.00 0.00 32.52 2.74
718 983 3.428532 AGCAAATCATTCAGCTTCCACT 58.571 40.909 0.00 0.00 32.52 4.00
719 984 3.863142 AGCAAATCATTCAGCTTCCAC 57.137 42.857 0.00 0.00 32.52 4.02
724 989 4.765856 AGTTGAGAAGCAAATCATTCAGCT 59.234 37.500 0.00 0.00 38.44 4.24
725 990 4.857588 CAGTTGAGAAGCAAATCATTCAGC 59.142 41.667 0.00 0.00 38.44 4.26
726 991 5.399858 CCAGTTGAGAAGCAAATCATTCAG 58.600 41.667 0.00 0.00 38.44 3.02
727 992 4.321452 GCCAGTTGAGAAGCAAATCATTCA 60.321 41.667 0.00 0.00 38.44 2.57
728 993 4.082354 AGCCAGTTGAGAAGCAAATCATTC 60.082 41.667 0.00 0.00 38.44 2.67
729 994 3.830755 AGCCAGTTGAGAAGCAAATCATT 59.169 39.130 0.00 0.00 38.44 2.57
730 995 3.428532 AGCCAGTTGAGAAGCAAATCAT 58.571 40.909 0.00 0.00 38.44 2.45
731 996 2.867624 AGCCAGTTGAGAAGCAAATCA 58.132 42.857 0.00 0.00 38.44 2.57
732 997 3.005155 ACAAGCCAGTTGAGAAGCAAATC 59.995 43.478 0.00 0.00 38.60 2.17
733 998 2.961062 ACAAGCCAGTTGAGAAGCAAAT 59.039 40.909 0.00 0.00 38.60 2.32
734 999 2.378038 ACAAGCCAGTTGAGAAGCAAA 58.622 42.857 0.00 0.00 38.60 3.68
735 1000 2.057137 ACAAGCCAGTTGAGAAGCAA 57.943 45.000 0.00 0.00 38.60 3.91
736 1001 2.057137 AACAAGCCAGTTGAGAAGCA 57.943 45.000 0.00 0.00 38.60 3.91
737 1002 2.878406 TGTAACAAGCCAGTTGAGAAGC 59.122 45.455 1.92 0.00 38.60 3.86
738 1003 5.335191 GGATTGTAACAAGCCAGTTGAGAAG 60.335 44.000 0.00 0.00 38.60 2.85
739 1004 4.518970 GGATTGTAACAAGCCAGTTGAGAA 59.481 41.667 0.00 0.00 38.60 2.87
740 1005 4.072131 GGATTGTAACAAGCCAGTTGAGA 58.928 43.478 0.00 0.00 38.60 3.27
741 1006 3.820467 TGGATTGTAACAAGCCAGTTGAG 59.180 43.478 0.00 0.00 38.60 3.02
742 1007 3.826524 TGGATTGTAACAAGCCAGTTGA 58.173 40.909 0.00 0.00 38.60 3.18
743 1008 4.549458 CTTGGATTGTAACAAGCCAGTTG 58.451 43.478 0.00 0.00 37.00 3.16
744 1009 3.573967 CCTTGGATTGTAACAAGCCAGTT 59.426 43.478 0.00 0.00 42.01 3.16
745 1010 3.157087 CCTTGGATTGTAACAAGCCAGT 58.843 45.455 0.00 0.00 42.01 4.00
746 1011 3.191371 GTCCTTGGATTGTAACAAGCCAG 59.809 47.826 0.00 0.00 42.01 4.85
747 1012 3.153919 GTCCTTGGATTGTAACAAGCCA 58.846 45.455 0.00 0.00 42.01 4.75
748 1013 2.492088 GGTCCTTGGATTGTAACAAGCC 59.508 50.000 0.00 0.00 42.01 4.35
749 1014 3.191371 CAGGTCCTTGGATTGTAACAAGC 59.809 47.826 0.00 0.00 42.01 4.01
750 1015 3.758554 CCAGGTCCTTGGATTGTAACAAG 59.241 47.826 0.00 0.00 40.87 3.16
751 1016 3.499563 CCCAGGTCCTTGGATTGTAACAA 60.500 47.826 2.57 0.00 40.87 2.83
752 1017 2.041081 CCCAGGTCCTTGGATTGTAACA 59.959 50.000 2.57 0.00 40.87 2.41
753 1018 2.620627 CCCCAGGTCCTTGGATTGTAAC 60.621 54.545 10.73 0.00 40.87 2.50
754 1019 1.638589 CCCCAGGTCCTTGGATTGTAA 59.361 52.381 10.73 0.00 40.87 2.41
755 1020 1.295020 CCCCAGGTCCTTGGATTGTA 58.705 55.000 10.73 0.00 40.87 2.41
756 1021 0.776080 ACCCCAGGTCCTTGGATTGT 60.776 55.000 10.73 0.00 40.87 2.71
757 1022 0.034089 GACCCCAGGTCCTTGGATTG 60.034 60.000 10.73 0.00 46.19 2.67
758 1023 2.398919 GACCCCAGGTCCTTGGATT 58.601 57.895 10.73 0.00 46.19 3.01
759 1024 4.171186 GACCCCAGGTCCTTGGAT 57.829 61.111 10.73 0.00 46.19 3.41
776 1041 2.579873 CACATCCAGCCCTATGAAAGG 58.420 52.381 0.00 0.00 46.09 3.11
777 1042 1.952296 GCACATCCAGCCCTATGAAAG 59.048 52.381 0.00 0.00 0.00 2.62
778 1043 1.284491 TGCACATCCAGCCCTATGAAA 59.716 47.619 0.00 0.00 0.00 2.69
779 1044 0.918258 TGCACATCCAGCCCTATGAA 59.082 50.000 0.00 0.00 0.00 2.57
780 1045 0.181114 GTGCACATCCAGCCCTATGA 59.819 55.000 13.17 0.00 0.00 2.15
781 1046 0.107066 TGTGCACATCCAGCCCTATG 60.107 55.000 17.42 0.00 0.00 2.23
782 1047 0.182061 CTGTGCACATCCAGCCCTAT 59.818 55.000 22.00 0.00 0.00 2.57
783 1048 1.603842 CTGTGCACATCCAGCCCTA 59.396 57.895 22.00 0.00 0.00 3.53
784 1049 2.353958 CTGTGCACATCCAGCCCT 59.646 61.111 22.00 0.00 0.00 5.19
785 1050 3.446570 GCTGTGCACATCCAGCCC 61.447 66.667 22.00 0.00 46.55 5.19
788 1053 0.604511 TGTGAGCTGTGCACATCCAG 60.605 55.000 22.00 9.89 41.00 3.86
789 1054 0.886043 GTGTGAGCTGTGCACATCCA 60.886 55.000 22.00 15.17 46.65 3.41
790 1055 0.886043 TGTGTGAGCTGTGCACATCC 60.886 55.000 22.00 14.47 46.65 3.51
791 1056 0.236711 GTGTGTGAGCTGTGCACATC 59.763 55.000 22.00 17.12 46.65 3.06
792 1057 0.464193 TGTGTGTGAGCTGTGCACAT 60.464 50.000 22.00 6.27 46.65 3.21
793 1058 1.078567 TGTGTGTGAGCTGTGCACA 60.079 52.632 20.37 20.37 43.41 4.57
794 1059 1.353103 GTGTGTGTGAGCTGTGCAC 59.647 57.895 10.75 10.75 36.81 4.57
795 1060 1.078567 TGTGTGTGTGAGCTGTGCA 60.079 52.632 0.00 0.00 0.00 4.57
796 1061 1.353103 GTGTGTGTGTGAGCTGTGC 59.647 57.895 0.00 0.00 0.00 4.57
797 1062 1.085893 TTGTGTGTGTGTGAGCTGTG 58.914 50.000 0.00 0.00 0.00 3.66
798 1063 1.672363 CATTGTGTGTGTGTGAGCTGT 59.328 47.619 0.00 0.00 0.00 4.40
799 1064 1.598676 GCATTGTGTGTGTGTGAGCTG 60.599 52.381 0.00 0.00 0.00 4.24
800 1065 0.664761 GCATTGTGTGTGTGTGAGCT 59.335 50.000 0.00 0.00 0.00 4.09
801 1066 0.381445 TGCATTGTGTGTGTGTGAGC 59.619 50.000 0.00 0.00 0.00 4.26
802 1067 1.401199 TGTGCATTGTGTGTGTGTGAG 59.599 47.619 0.00 0.00 0.00 3.51
803 1068 1.401199 CTGTGCATTGTGTGTGTGTGA 59.599 47.619 0.00 0.00 0.00 3.58
804 1069 1.830086 CTGTGCATTGTGTGTGTGTG 58.170 50.000 0.00 0.00 0.00 3.82
805 1070 0.101040 GCTGTGCATTGTGTGTGTGT 59.899 50.000 0.00 0.00 0.00 3.72
806 1071 0.100861 TGCTGTGCATTGTGTGTGTG 59.899 50.000 0.00 0.00 31.71 3.82
807 1072 0.101040 GTGCTGTGCATTGTGTGTGT 59.899 50.000 0.00 0.00 41.91 3.72
808 1073 0.595567 GGTGCTGTGCATTGTGTGTG 60.596 55.000 0.00 0.00 41.91 3.82
809 1074 0.752743 AGGTGCTGTGCATTGTGTGT 60.753 50.000 0.00 0.00 41.91 3.72
810 1075 0.386476 AAGGTGCTGTGCATTGTGTG 59.614 50.000 0.00 0.00 41.91 3.82
811 1076 0.670162 GAAGGTGCTGTGCATTGTGT 59.330 50.000 0.00 0.00 41.91 3.72
812 1077 0.038892 GGAAGGTGCTGTGCATTGTG 60.039 55.000 0.00 0.00 41.91 3.33
813 1078 0.467844 TGGAAGGTGCTGTGCATTGT 60.468 50.000 0.00 0.00 41.91 2.71
814 1079 0.675083 TTGGAAGGTGCTGTGCATTG 59.325 50.000 0.00 0.00 41.91 2.82
815 1080 0.963962 CTTGGAAGGTGCTGTGCATT 59.036 50.000 0.00 0.00 41.91 3.56
816 1081 0.111061 TCTTGGAAGGTGCTGTGCAT 59.889 50.000 0.00 0.00 41.91 3.96
817 1082 0.106769 TTCTTGGAAGGTGCTGTGCA 60.107 50.000 0.00 0.00 35.60 4.57
818 1083 1.032014 TTTCTTGGAAGGTGCTGTGC 58.968 50.000 0.00 0.00 0.00 4.57
819 1084 2.033801 CAGTTTCTTGGAAGGTGCTGTG 59.966 50.000 0.00 0.00 0.00 3.66
820 1085 2.301346 CAGTTTCTTGGAAGGTGCTGT 58.699 47.619 0.00 0.00 0.00 4.40
821 1086 1.000938 GCAGTTTCTTGGAAGGTGCTG 60.001 52.381 7.97 0.00 0.00 4.41
822 1087 1.133668 AGCAGTTTCTTGGAAGGTGCT 60.134 47.619 10.57 10.57 34.99 4.40
823 1088 1.000938 CAGCAGTTTCTTGGAAGGTGC 60.001 52.381 7.43 7.43 0.00 5.01
824 1089 1.000938 GCAGCAGTTTCTTGGAAGGTG 60.001 52.381 0.00 0.00 0.00 4.00
825 1090 1.133668 AGCAGCAGTTTCTTGGAAGGT 60.134 47.619 0.00 0.00 0.00 3.50
826 1091 1.613836 AGCAGCAGTTTCTTGGAAGG 58.386 50.000 0.00 0.00 0.00 3.46
827 1092 3.817647 AGTAAGCAGCAGTTTCTTGGAAG 59.182 43.478 0.00 0.00 0.00 3.46
828 1093 3.820557 AGTAAGCAGCAGTTTCTTGGAA 58.179 40.909 0.00 0.00 0.00 3.53
829 1094 3.492102 AGTAAGCAGCAGTTTCTTGGA 57.508 42.857 0.00 0.00 0.00 3.53
830 1095 3.854784 GCAAGTAAGCAGCAGTTTCTTGG 60.855 47.826 12.69 0.58 33.71 3.61
831 1096 3.243168 TGCAAGTAAGCAGCAGTTTCTTG 60.243 43.478 8.55 8.55 40.11 3.02
832 1097 2.951642 TGCAAGTAAGCAGCAGTTTCTT 59.048 40.909 0.00 0.00 40.11 2.52
833 1098 2.575532 TGCAAGTAAGCAGCAGTTTCT 58.424 42.857 0.00 0.00 40.11 2.52
852 1117 2.105006 AGTAGACCAGTGCAAGCATG 57.895 50.000 0.00 0.00 0.00 4.06
853 1118 2.616510 GGAAGTAGACCAGTGCAAGCAT 60.617 50.000 0.00 0.00 0.00 3.79
854 1119 1.270839 GGAAGTAGACCAGTGCAAGCA 60.271 52.381 0.00 0.00 0.00 3.91
855 1120 1.443802 GGAAGTAGACCAGTGCAAGC 58.556 55.000 0.00 0.00 0.00 4.01
856 1121 1.673033 CCGGAAGTAGACCAGTGCAAG 60.673 57.143 0.00 0.00 0.00 4.01
857 1122 0.320374 CCGGAAGTAGACCAGTGCAA 59.680 55.000 0.00 0.00 0.00 4.08
858 1123 0.830444 ACCGGAAGTAGACCAGTGCA 60.830 55.000 9.46 0.00 0.00 4.57
859 1124 0.108756 GACCGGAAGTAGACCAGTGC 60.109 60.000 9.46 0.00 0.00 4.40
860 1125 1.254026 TGACCGGAAGTAGACCAGTG 58.746 55.000 9.46 0.00 0.00 3.66
861 1126 1.617357 GTTGACCGGAAGTAGACCAGT 59.383 52.381 9.46 0.00 0.00 4.00
862 1127 1.893801 AGTTGACCGGAAGTAGACCAG 59.106 52.381 9.46 0.00 0.00 4.00
863 1128 2.005370 AGTTGACCGGAAGTAGACCA 57.995 50.000 9.46 0.00 0.00 4.02
864 1129 2.685100 CAAGTTGACCGGAAGTAGACC 58.315 52.381 9.46 0.00 0.00 3.85
865 1130 2.067013 GCAAGTTGACCGGAAGTAGAC 58.933 52.381 9.46 0.00 0.00 2.59
866 1131 1.968493 AGCAAGTTGACCGGAAGTAGA 59.032 47.619 9.46 0.00 0.00 2.59
867 1132 2.457366 AGCAAGTTGACCGGAAGTAG 57.543 50.000 9.46 0.00 0.00 2.57
868 1133 2.922740 AAGCAAGTTGACCGGAAGTA 57.077 45.000 9.46 0.00 0.00 2.24
869 1134 2.490991 GTAAGCAAGTTGACCGGAAGT 58.509 47.619 9.46 0.00 0.00 3.01
870 1135 1.804748 GGTAAGCAAGTTGACCGGAAG 59.195 52.381 9.46 0.00 0.00 3.46
871 1136 1.141254 TGGTAAGCAAGTTGACCGGAA 59.859 47.619 9.46 0.00 34.49 4.30
872 1137 0.759959 TGGTAAGCAAGTTGACCGGA 59.240 50.000 9.46 0.00 34.49 5.14
873 1138 0.872388 GTGGTAAGCAAGTTGACCGG 59.128 55.000 7.16 0.00 34.49 5.28
874 1139 0.872388 GGTGGTAAGCAAGTTGACCG 59.128 55.000 7.16 0.00 34.49 4.79
875 1140 2.271944 AGGTGGTAAGCAAGTTGACC 57.728 50.000 7.16 6.16 0.00 4.02
885 1150 4.262617 GGAAGGAAAGCTTAGGTGGTAAG 58.737 47.826 0.00 0.00 41.20 2.34
886 1151 3.653836 TGGAAGGAAAGCTTAGGTGGTAA 59.346 43.478 0.00 0.00 0.00 2.85
887 1152 3.253220 TGGAAGGAAAGCTTAGGTGGTA 58.747 45.455 0.00 0.00 0.00 3.25
888 1153 2.062636 TGGAAGGAAAGCTTAGGTGGT 58.937 47.619 0.00 0.00 0.00 4.16
889 1154 2.879103 TGGAAGGAAAGCTTAGGTGG 57.121 50.000 0.00 0.00 0.00 4.61
890 1155 3.119352 GCAATGGAAGGAAAGCTTAGGTG 60.119 47.826 0.00 0.00 0.00 4.00
891 1156 3.092301 GCAATGGAAGGAAAGCTTAGGT 58.908 45.455 0.00 0.00 0.00 3.08
892 1157 3.359950 AGCAATGGAAGGAAAGCTTAGG 58.640 45.455 0.00 0.00 0.00 2.69
893 1158 4.741342 CAAGCAATGGAAGGAAAGCTTAG 58.259 43.478 0.00 0.00 40.01 2.18
894 1159 4.789012 CAAGCAATGGAAGGAAAGCTTA 57.211 40.909 0.00 0.00 40.01 3.09
895 1160 3.672767 CAAGCAATGGAAGGAAAGCTT 57.327 42.857 0.00 0.00 42.45 3.74
907 1172 0.038744 ACCCCTGTCTCCAAGCAATG 59.961 55.000 0.00 0.00 0.00 2.82
908 1173 0.038744 CACCCCTGTCTCCAAGCAAT 59.961 55.000 0.00 0.00 0.00 3.56
909 1174 1.059584 TCACCCCTGTCTCCAAGCAA 61.060 55.000 0.00 0.00 0.00 3.91
910 1175 1.059584 TTCACCCCTGTCTCCAAGCA 61.060 55.000 0.00 0.00 0.00 3.91
911 1176 0.322008 CTTCACCCCTGTCTCCAAGC 60.322 60.000 0.00 0.00 0.00 4.01
912 1177 0.322008 GCTTCACCCCTGTCTCCAAG 60.322 60.000 0.00 0.00 0.00 3.61
913 1178 1.761174 GCTTCACCCCTGTCTCCAA 59.239 57.895 0.00 0.00 0.00 3.53
914 1179 2.224159 GGCTTCACCCCTGTCTCCA 61.224 63.158 0.00 0.00 0.00 3.86
915 1180 2.671682 GGCTTCACCCCTGTCTCC 59.328 66.667 0.00 0.00 0.00 3.71
924 1189 2.048603 GGCAGATGTGGGCTTCACC 61.049 63.158 7.94 0.00 45.48 4.02
925 1190 1.303561 TGGCAGATGTGGGCTTCAC 60.304 57.895 0.00 4.24 46.23 3.18
926 1191 1.303561 GTGGCAGATGTGGGCTTCA 60.304 57.895 0.00 0.00 0.00 3.02
927 1192 1.001641 AGTGGCAGATGTGGGCTTC 60.002 57.895 0.00 0.00 0.00 3.86
928 1193 1.001641 GAGTGGCAGATGTGGGCTT 60.002 57.895 0.00 0.00 0.00 4.35
929 1194 2.673523 GAGTGGCAGATGTGGGCT 59.326 61.111 0.00 0.00 0.00 5.19
930 1195 2.439156 GGAGTGGCAGATGTGGGC 60.439 66.667 0.00 0.00 0.00 5.36
931 1196 0.962356 GTTGGAGTGGCAGATGTGGG 60.962 60.000 0.00 0.00 0.00 4.61
932 1197 0.962356 GGTTGGAGTGGCAGATGTGG 60.962 60.000 0.00 0.00 0.00 4.17
933 1198 0.250858 TGGTTGGAGTGGCAGATGTG 60.251 55.000 0.00 0.00 0.00 3.21
934 1199 0.478072 TTGGTTGGAGTGGCAGATGT 59.522 50.000 0.00 0.00 0.00 3.06
935 1200 1.619654 TTTGGTTGGAGTGGCAGATG 58.380 50.000 0.00 0.00 0.00 2.90
936 1201 1.963515 GTTTTGGTTGGAGTGGCAGAT 59.036 47.619 0.00 0.00 0.00 2.90
937 1202 1.398692 GTTTTGGTTGGAGTGGCAGA 58.601 50.000 0.00 0.00 0.00 4.26
938 1203 0.030638 CGTTTTGGTTGGAGTGGCAG 59.969 55.000 0.00 0.00 0.00 4.85
939 1204 1.388065 CCGTTTTGGTTGGAGTGGCA 61.388 55.000 0.00 0.00 0.00 4.92
940 1205 1.362355 CCGTTTTGGTTGGAGTGGC 59.638 57.895 0.00 0.00 0.00 5.01
965 1230 1.973515 TCTCTTTCTCTCCTGCAAGCA 59.026 47.619 0.00 0.00 0.00 3.91
967 1232 3.763360 TCTCTCTCTTTCTCTCCTGCAAG 59.237 47.826 0.00 0.00 0.00 4.01
970 1235 3.620488 TCTCTCTCTCTTTCTCTCCTGC 58.380 50.000 0.00 0.00 0.00 4.85
974 1239 5.684704 TCATCCTCTCTCTCTCTTTCTCTC 58.315 45.833 0.00 0.00 0.00 3.20
977 1242 6.078456 TCTTCATCCTCTCTCTCTCTTTCT 57.922 41.667 0.00 0.00 0.00 2.52
978 1243 6.547141 TCATCTTCATCCTCTCTCTCTCTTTC 59.453 42.308 0.00 0.00 0.00 2.62
979 1244 6.434302 TCATCTTCATCCTCTCTCTCTCTTT 58.566 40.000 0.00 0.00 0.00 2.52
980 1245 6.017211 TCATCTTCATCCTCTCTCTCTCTT 57.983 41.667 0.00 0.00 0.00 2.85
991 1256 3.053095 ACAGGCCATTTCATCTTCATCCT 60.053 43.478 5.01 0.00 0.00 3.24
1017 1282 1.186200 TGTAGCTCAGATCAGCCGTT 58.814 50.000 0.00 0.00 40.65 4.44
1019 1284 1.565305 GTTGTAGCTCAGATCAGCCG 58.435 55.000 0.00 0.00 40.65 5.52
1021 1286 1.923204 CACGTTGTAGCTCAGATCAGC 59.077 52.381 0.00 0.00 39.99 4.26
1044 1681 1.079612 CAGCACGCCACTGATCTCA 60.080 57.895 0.00 0.00 37.32 3.27
1045 1682 1.079543 ACAGCACGCCACTGATCTC 60.080 57.895 6.90 0.00 38.55 2.75
1047 1684 2.447887 CGACAGCACGCCACTGATC 61.448 63.158 6.90 0.00 38.55 2.92
1048 1685 2.433145 CGACAGCACGCCACTGAT 60.433 61.111 6.90 0.00 38.55 2.90
1127 2592 3.181497 CCAGTTGCCGTTTAGATCCAATG 60.181 47.826 0.00 0.00 0.00 2.82
1161 2626 7.150447 TCTGAAGTATCCTGTATCCAGTCTA 57.850 40.000 0.00 0.00 36.95 2.59
1165 2630 6.907853 TGATCTGAAGTATCCTGTATCCAG 57.092 41.667 0.00 0.00 38.50 3.86
1205 2670 1.519455 CTCAGCCACGTCGGGAATC 60.519 63.158 0.00 0.00 34.06 2.52
1242 2707 3.342719 TGCGTTGGAAATATCAAGCTGA 58.657 40.909 0.00 0.00 0.00 4.26
1244 2709 3.428045 GCTTGCGTTGGAAATATCAAGCT 60.428 43.478 15.04 0.00 44.29 3.74
1324 2789 7.732025 TCAGTTCATTCCTTGACAAGTAAGTA 58.268 34.615 14.03 0.00 32.84 2.24
1325 2790 6.591935 TCAGTTCATTCCTTGACAAGTAAGT 58.408 36.000 14.03 1.44 32.84 2.24
1326 2791 6.708054 ACTCAGTTCATTCCTTGACAAGTAAG 59.292 38.462 14.03 0.00 32.84 2.34
1327 2792 6.483307 CACTCAGTTCATTCCTTGACAAGTAA 59.517 38.462 14.03 5.04 32.84 2.24
1451 2916 4.433022 CGAAAGATGCAACTGAACGAGTAC 60.433 45.833 0.00 0.00 33.09 2.73
1457 2922 2.224079 TGCTCGAAAGATGCAACTGAAC 59.776 45.455 0.00 0.00 39.86 3.18
1458 2923 2.493035 TGCTCGAAAGATGCAACTGAA 58.507 42.857 0.00 0.00 39.86 3.02
1502 2967 8.813282 CAAATGATTCAATTGACACACATATGG 58.187 33.333 7.89 0.00 0.00 2.74
1530 2995 0.532573 GCTCGACAGATCCAGTTCCA 59.467 55.000 0.00 0.00 0.00 3.53
1568 3033 6.872585 AATATTTTCTGGGCATCTTGGAAA 57.127 33.333 0.00 0.00 0.00 3.13
1665 3139 2.158475 TCTGGGAATTTGCCTGACAACT 60.158 45.455 11.64 0.00 38.23 3.16
1675 3149 3.439857 TGGAGGAAGTCTGGGAATTTG 57.560 47.619 0.00 0.00 0.00 2.32
1687 3161 2.429610 CCATGAGGCATTTTGGAGGAAG 59.570 50.000 0.00 0.00 0.00 3.46
1742 3216 1.067635 CCATGTTGGCAAACTACCAGC 60.068 52.381 0.00 0.00 38.73 4.85
1793 3267 5.995282 AGAACATGTTTGATCGTAGAACCAA 59.005 36.000 13.36 0.00 43.58 3.67
1822 3296 1.545651 GCAAACTGCCTAGGAAGGTGT 60.546 52.381 21.67 2.81 45.64 4.16
1906 3380 1.978580 GTCTCCCAAGTCCCAAGAGAA 59.021 52.381 0.00 0.00 35.48 2.87
1910 3384 1.352083 TCAGTCTCCCAAGTCCCAAG 58.648 55.000 0.00 0.00 0.00 3.61
1911 3385 1.814429 TTCAGTCTCCCAAGTCCCAA 58.186 50.000 0.00 0.00 0.00 4.12
1912 3386 1.699634 CTTTCAGTCTCCCAAGTCCCA 59.300 52.381 0.00 0.00 0.00 4.37
1913 3387 1.611936 GCTTTCAGTCTCCCAAGTCCC 60.612 57.143 0.00 0.00 0.00 4.46
1914 3388 1.349357 AGCTTTCAGTCTCCCAAGTCC 59.651 52.381 0.00 0.00 0.00 3.85
1915 3389 2.849294 AGCTTTCAGTCTCCCAAGTC 57.151 50.000 0.00 0.00 0.00 3.01
1916 3390 3.840666 TCATAGCTTTCAGTCTCCCAAGT 59.159 43.478 0.00 0.00 0.00 3.16
2284 3758 4.093011 CGAGGGGATTCTTCCTGATAGAT 58.907 47.826 4.31 0.00 42.20 1.98
2338 3819 2.991190 CCATGGTTGCCGACGTATATAC 59.009 50.000 2.57 2.53 0.00 1.47
2379 3860 3.187022 GCTCCATTTGAACAATTGTTGGC 59.813 43.478 27.85 14.88 38.56 4.52
2478 3962 9.825109 TCGATGTTTCTTACCAAATATGTATCA 57.175 29.630 0.00 0.00 0.00 2.15
2482 3966 8.234546 GTGTTCGATGTTTCTTACCAAATATGT 58.765 33.333 0.00 0.00 0.00 2.29
2485 3969 6.711194 TGGTGTTCGATGTTTCTTACCAAATA 59.289 34.615 0.00 0.00 34.33 1.40
2486 3970 5.533154 TGGTGTTCGATGTTTCTTACCAAAT 59.467 36.000 0.00 0.00 34.33 2.32
2487 3971 4.882427 TGGTGTTCGATGTTTCTTACCAAA 59.118 37.500 0.00 0.00 34.33 3.28
2488 3972 4.452825 TGGTGTTCGATGTTTCTTACCAA 58.547 39.130 0.00 0.00 34.33 3.67
2496 4100 1.909700 ATGCCTGGTGTTCGATGTTT 58.090 45.000 0.00 0.00 0.00 2.83
2500 4104 1.167851 CACAATGCCTGGTGTTCGAT 58.832 50.000 0.00 0.00 0.00 3.59
2506 4110 0.599558 CCTTGACACAATGCCTGGTG 59.400 55.000 0.00 0.00 40.78 4.17
2509 4113 3.068590 AGAAAACCTTGACACAATGCCTG 59.931 43.478 0.00 0.00 0.00 4.85
2516 4120 4.095782 GCAGTGTAAGAAAACCTTGACACA 59.904 41.667 5.83 0.00 39.31 3.72
2517 4121 4.095782 TGCAGTGTAAGAAAACCTTGACAC 59.904 41.667 0.00 0.00 38.36 3.67
2521 4125 4.630894 TGTGCAGTGTAAGAAAACCTTG 57.369 40.909 0.00 0.00 36.34 3.61
2533 4137 1.719063 ATCCAGGGGTTGTGCAGTGT 61.719 55.000 0.00 0.00 0.00 3.55
2547 4153 4.836825 AGAACACAAGACCATGTATCCAG 58.163 43.478 0.00 0.00 30.84 3.86
2554 4160 6.260936 AGAACACTTAAGAACACAAGACCATG 59.739 38.462 10.09 0.00 0.00 3.66
2603 7612 5.411361 ACATGCGCATTAAACAACTTCTCTA 59.589 36.000 22.81 0.00 0.00 2.43
2619 7628 3.181498 CCATGTTGAAAGATACATGCGCA 60.181 43.478 14.96 14.96 46.44 6.09
2624 7633 9.253832 TGGAATAAACCATGTTGAAAGATACAT 57.746 29.630 0.00 0.00 35.45 2.29
2648 7657 5.392380 GGAATGCTCAAGTAATTGACTGTGG 60.392 44.000 0.56 0.00 38.87 4.17
2832 8049 0.392998 AGCTATCCAGGCAAACGGTG 60.393 55.000 0.00 0.00 0.00 4.94
2851 10628 7.829211 TGTCATCATGAGATCGAGTACCATATA 59.171 37.037 0.09 0.00 30.20 0.86
2852 10629 6.660949 TGTCATCATGAGATCGAGTACCATAT 59.339 38.462 0.09 0.00 30.20 1.78
2896 10719 3.120086 ATGGGGCCACGGTGATAGC 62.120 63.158 10.28 4.44 0.00 2.97
2900 10723 3.014538 ATGATGGGGCCACGGTGA 61.015 61.111 10.28 0.00 0.00 4.02
2912 10735 0.857287 CGTGCGTGATGGAGATGATG 59.143 55.000 0.00 0.00 0.00 3.07
2913 10736 0.877649 GCGTGCGTGATGGAGATGAT 60.878 55.000 0.00 0.00 0.00 2.45
2914 10737 1.519234 GCGTGCGTGATGGAGATGA 60.519 57.895 0.00 0.00 0.00 2.92
2935 10758 2.972505 CCGGGTGTGAGTGTGTGC 60.973 66.667 0.00 0.00 0.00 4.57
2955 10782 1.841302 ATGAGAAACTGCGGCTGGGA 61.841 55.000 11.64 0.00 0.00 4.37
3077 10938 4.447544 TGGTAACAGTGCACGGTG 57.552 55.556 23.39 13.80 46.17 4.94
3093 10975 1.647748 GCGAGCGCGTAATTACATTG 58.352 50.000 15.67 5.55 40.36 2.82
3175 11067 2.561569 CCATTTCTGTCCGTGGGATAC 58.438 52.381 0.00 0.00 32.73 2.24
3177 11069 3.882131 CCATTTCTGTCCGTGGGAT 57.118 52.632 0.00 0.00 32.73 3.85
3180 11072 1.378514 CCCCCATTTCTGTCCGTGG 60.379 63.158 0.00 0.00 0.00 4.94
3201 11457 3.119193 CAAACAGTGCCGTGCCTT 58.881 55.556 0.00 0.00 0.00 4.35
3213 11477 3.222855 CCAAGGCACCGGCAAACA 61.223 61.111 0.00 0.00 43.71 2.83
3214 11478 4.662961 GCCAAGGCACCGGCAAAC 62.663 66.667 0.00 0.00 45.60 2.93
3220 11484 2.743928 GACAGAGCCAAGGCACCG 60.744 66.667 14.40 1.76 44.88 4.94
3223 11487 4.806936 CTTGACAGAGCCAAGGCA 57.193 55.556 14.40 0.00 44.88 4.75
3226 11490 0.250640 AGTGCCTTGACAGAGCCAAG 60.251 55.000 0.00 0.00 40.37 3.61
3228 11492 1.071987 CAGTGCCTTGACAGAGCCA 59.928 57.895 0.00 0.00 0.00 4.75
3229 11493 1.673665 CCAGTGCCTTGACAGAGCC 60.674 63.158 0.00 0.00 0.00 4.70
3230 11494 0.035630 ATCCAGTGCCTTGACAGAGC 60.036 55.000 0.00 0.00 0.00 4.09
3231 11495 1.554160 AGATCCAGTGCCTTGACAGAG 59.446 52.381 0.00 0.00 0.00 3.35
3232 11496 1.552337 GAGATCCAGTGCCTTGACAGA 59.448 52.381 0.00 0.00 0.00 3.41
3234 11498 1.351076 TGAGATCCAGTGCCTTGACA 58.649 50.000 0.00 0.00 0.00 3.58
3236 11500 3.272574 GATTGAGATCCAGTGCCTTGA 57.727 47.619 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.