Multiple sequence alignment - TraesCS5A01G441500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G441500 chr5A 100.000 4816 0 0 1 4816 622295143 622299958 0.000000e+00 8894.0
1 TraesCS5A01G441500 chr5A 84.586 1570 184 35 2355 3903 622363017 622364549 0.000000e+00 1506.0
2 TraesCS5A01G441500 chr5A 85.922 824 84 15 373 1178 622339514 622340323 0.000000e+00 850.0
3 TraesCS5A01G441500 chr5A 85.831 614 80 6 1243 1850 622340529 622341141 0.000000e+00 645.0
4 TraesCS5A01G441500 chr5A 79.109 359 41 14 4297 4628 622364888 622365239 2.920000e-52 217.0
5 TraesCS5A01G441500 chr5A 92.958 71 4 1 1 70 622339191 622339261 8.530000e-18 102.0
6 TraesCS5A01G441500 chr5A 100.000 34 0 0 1851 1884 622296959 622296992 4.020000e-06 63.9
7 TraesCS5A01G441500 chr5A 100.000 34 0 0 1817 1850 622296993 622297026 4.020000e-06 63.9
8 TraesCS5A01G441500 chr5B 94.945 2176 109 1 1851 4026 617429568 617431742 0.000000e+00 3408.0
9 TraesCS5A01G441500 chr5B 93.023 1290 60 9 585 1850 617428318 617429601 0.000000e+00 1857.0
10 TraesCS5A01G441500 chr5B 85.519 511 30 13 103 594 617427426 617427911 1.200000e-135 494.0
11 TraesCS5A01G441500 chr5B 75.351 499 57 36 4357 4811 617432029 617432505 3.830000e-41 180.0
12 TraesCS5A01G441500 chr5B 92.079 101 2 3 1 101 617427282 617427376 2.340000e-28 137.0
13 TraesCS5A01G441500 chr5D 94.521 2117 99 8 1852 3960 498109182 498111289 0.000000e+00 3251.0
14 TraesCS5A01G441500 chr5D 93.411 1290 55 8 585 1850 498107931 498109214 0.000000e+00 1884.0
15 TraesCS5A01G441500 chr5D 85.203 419 30 18 4003 4393 498111295 498111709 7.510000e-108 401.0
16 TraesCS5A01G441500 chr5D 93.452 168 8 1 103 270 498106863 498107027 3.720000e-61 246.0
17 TraesCS5A01G441500 chr5D 84.878 205 14 7 391 594 498107333 498107521 1.770000e-44 191.0
18 TraesCS5A01G441500 chr5D 94.118 102 2 1 1 102 498106717 498106814 8.350000e-33 152.0
19 TraesCS5A01G441500 chr6D 72.503 931 208 34 2525 3447 343311118 343310228 1.720000e-64 257.0
20 TraesCS5A01G441500 chr6D 89.474 57 4 2 4032 4086 5250916 5250972 2.400000e-08 71.3
21 TraesCS5A01G441500 chr6B 73.333 555 124 17 2525 3069 518037978 518037438 2.960000e-42 183.0
22 TraesCS5A01G441500 chr2D 94.545 55 2 1 4032 4086 11258731 11258784 3.090000e-12 84.2
23 TraesCS5A01G441500 chr2D 91.071 56 4 1 4031 4086 14742436 14742382 1.860000e-09 75.0
24 TraesCS5A01G441500 chr4A 92.453 53 4 0 4033 4085 481414029 481413977 5.170000e-10 76.8
25 TraesCS5A01G441500 chr4A 90.909 55 5 0 4032 4086 664892767 664892821 1.860000e-09 75.0
26 TraesCS5A01G441500 chr7B 90.909 55 5 0 4032 4086 529195770 529195716 1.860000e-09 75.0
27 TraesCS5A01G441500 chr6A 90.909 55 5 0 4032 4086 58811567 58811513 1.860000e-09 75.0
28 TraesCS5A01G441500 chr7D 89.655 58 3 3 4031 4086 530760068 530760012 2.400000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G441500 chr5A 622295143 622299958 4815 False 3007.266667 8894 100.0000 1 4816 3 chr5A.!!$F1 4815
1 TraesCS5A01G441500 chr5A 622363017 622365239 2222 False 861.500000 1506 81.8475 2355 4628 2 chr5A.!!$F3 2273
2 TraesCS5A01G441500 chr5A 622339191 622341141 1950 False 532.333333 850 88.2370 1 1850 3 chr5A.!!$F2 1849
3 TraesCS5A01G441500 chr5B 617427282 617432505 5223 False 1215.200000 3408 88.1834 1 4811 5 chr5B.!!$F1 4810
4 TraesCS5A01G441500 chr5D 498106717 498111709 4992 False 1020.833333 3251 90.9305 1 4393 6 chr5D.!!$F1 4392
5 TraesCS5A01G441500 chr6D 343310228 343311118 890 True 257.000000 257 72.5030 2525 3447 1 chr6D.!!$R1 922


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 738 0.175760 TGAGGCTGCACTTCGTATCC 59.824 55.0 0.50 0.0 0.0 2.59 F
1119 1826 0.106335 AGCCATGCCATCTCTTCTCG 59.894 55.0 0.00 0.0 0.0 4.04 F
1865 2750 0.033228 CAATTGGCGGCAGTGGAAAA 59.967 50.0 12.87 0.0 0.0 2.29 F
1866 2751 0.033366 AATTGGCGGCAGTGGAAAAC 59.967 50.0 12.87 0.0 0.0 2.43 F
3249 4151 0.035439 CATACAAGGCCCAAGTCCGT 60.035 55.0 0.00 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 2731 0.033228 TTTTCCACTGCCGCCAATTG 59.967 50.000 0.00 0.0 0.00 2.32 R
2077 2962 0.385390 CAGCCGCAAAATATCACCCC 59.615 55.000 0.00 0.0 0.00 4.95 R
3231 4133 0.035439 CACGGACTTGGGCCTTGTAT 60.035 55.000 4.53 0.0 0.00 2.29 R
3426 4328 1.077357 TCACTTGGCCCGTGTTTGT 60.077 52.632 18.46 0.0 34.14 2.83 R
4228 5153 0.179084 CTGTTCCACCTCACACACGT 60.179 55.000 0.00 0.0 0.00 4.49 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.074412 TGATTTCTTCAAGAACGAGGCC 58.926 45.455 0.00 0.00 33.26 5.19
208 293 7.954835 TCAAAATCAATTTAGGGCTCATATGG 58.045 34.615 2.13 0.00 0.00 2.74
229 314 0.324645 ATTGGGGGCTGTGTGAATCC 60.325 55.000 0.00 0.00 0.00 3.01
232 317 0.623723 GGGGGCTGTGTGAATCCTAA 59.376 55.000 0.00 0.00 0.00 2.69
241 326 5.297776 GCTGTGTGAATCCTAATTATGCAGT 59.702 40.000 0.00 0.00 0.00 4.40
243 328 5.589855 TGTGTGAATCCTAATTATGCAGTGG 59.410 40.000 0.00 0.00 0.00 4.00
244 329 4.580167 TGTGAATCCTAATTATGCAGTGGC 59.420 41.667 0.00 0.00 41.68 5.01
245 330 4.022849 GTGAATCCTAATTATGCAGTGGCC 60.023 45.833 0.00 0.00 40.13 5.36
265 350 3.820689 CCGGATGTACACATTGTGTTTG 58.179 45.455 26.16 10.62 45.08 2.93
270 355 7.081349 CGGATGTACACATTGTGTTTGTATTT 58.919 34.615 26.16 6.38 45.08 1.40
272 357 8.698854 GGATGTACACATTGTGTTTGTATTTTG 58.301 33.333 26.16 0.00 45.08 2.44
280 365 7.710044 ACATTGTGTTTGTATTTTGATGCTTCA 59.290 29.630 0.00 0.00 0.00 3.02
283 368 9.755804 TTGTGTTTGTATTTTGATGCTTCATTA 57.244 25.926 2.75 0.00 0.00 1.90
326 422 7.782644 ACCCTTTATCGAAAAATATGGGATTGA 59.217 33.333 16.62 0.00 33.22 2.57
337 433 5.955850 ATATGGGATTGAGGGGATTTTCT 57.044 39.130 0.00 0.00 0.00 2.52
347 443 4.947388 TGAGGGGATTTTCTAAATTCACCG 59.053 41.667 11.17 0.00 43.31 4.94
349 445 5.330233 AGGGGATTTTCTAAATTCACCGTT 58.670 37.500 11.17 0.00 43.31 4.44
367 463 2.349580 CGTTGATGCGATCACATTCAGT 59.650 45.455 0.00 0.00 39.39 3.41
416 686 4.634004 GCCGTTATTGCACATGGCTATATA 59.366 41.667 13.53 0.00 45.15 0.86
417 687 5.296780 GCCGTTATTGCACATGGCTATATAT 59.703 40.000 13.53 0.00 45.15 0.86
420 691 7.148255 CCGTTATTGCACATGGCTATATATTGT 60.148 37.037 0.00 0.00 45.15 2.71
440 711 7.948278 ATTGTCAGCGTACTAATAGGATTTC 57.052 36.000 0.00 0.00 0.00 2.17
455 726 2.159282 GGATTTCTGTTGCATGAGGCTG 60.159 50.000 0.00 0.00 45.15 4.85
462 733 2.036571 TGCATGAGGCTGCACTTCG 61.037 57.895 0.50 0.00 46.76 3.79
463 734 2.037136 GCATGAGGCTGCACTTCGT 61.037 57.895 0.50 0.00 41.87 3.85
464 735 0.740868 GCATGAGGCTGCACTTCGTA 60.741 55.000 0.50 0.00 41.87 3.43
466 737 1.863454 CATGAGGCTGCACTTCGTATC 59.137 52.381 0.50 0.00 0.00 2.24
467 738 0.175760 TGAGGCTGCACTTCGTATCC 59.824 55.000 0.50 0.00 0.00 2.59
468 739 0.530870 GAGGCTGCACTTCGTATCCC 60.531 60.000 0.50 0.00 0.00 3.85
469 740 0.978146 AGGCTGCACTTCGTATCCCT 60.978 55.000 0.50 0.00 0.00 4.20
471 742 1.138266 GGCTGCACTTCGTATCCCTTA 59.862 52.381 0.50 0.00 0.00 2.69
472 743 2.224305 GGCTGCACTTCGTATCCCTTAT 60.224 50.000 0.50 0.00 0.00 1.73
474 745 3.877508 GCTGCACTTCGTATCCCTTATTT 59.122 43.478 0.00 0.00 0.00 1.40
475 746 4.260784 GCTGCACTTCGTATCCCTTATTTG 60.261 45.833 0.00 0.00 0.00 2.32
476 747 4.839121 TGCACTTCGTATCCCTTATTTGT 58.161 39.130 0.00 0.00 0.00 2.83
477 748 5.979993 TGCACTTCGTATCCCTTATTTGTA 58.020 37.500 0.00 0.00 0.00 2.41
516 787 4.274147 TGGTTGTTCTGTCTGGCTTTTTA 58.726 39.130 0.00 0.00 0.00 1.52
573 848 2.404693 CGTTGCAACAATTGATTGACGG 59.595 45.455 28.01 4.26 40.14 4.79
700 1400 7.634671 ATGTATGTGCTTCATTTCATTCAGA 57.365 32.000 0.89 0.00 37.91 3.27
747 1447 0.398098 CGGTAGAGGGGTACATGGGT 60.398 60.000 0.00 0.00 0.00 4.51
783 1483 1.936547 CTATTGGAAGAAGCTCGTGCC 59.063 52.381 5.73 0.00 40.80 5.01
791 1491 0.179124 GAAGCTCGTGCCGATCTCTT 60.179 55.000 5.73 4.76 40.80 2.85
905 1612 0.392998 CTCGGCCAGCTGGTTGTTAT 60.393 55.000 32.81 0.00 37.57 1.89
939 1646 4.528206 TCGAGGATATATTGGTGCTCACAT 59.472 41.667 2.21 0.00 33.01 3.21
1022 1729 7.011482 CCATCCGAAGATAGTAAAAGTGAAAGG 59.989 40.741 0.00 0.00 0.00 3.11
1025 1732 7.601508 TCCGAAGATAGTAAAAGTGAAAGGAAC 59.398 37.037 0.00 0.00 0.00 3.62
1030 1737 5.941948 AGTAAAAGTGAAAGGAACGATGG 57.058 39.130 0.00 0.00 0.00 3.51
1053 1760 4.643387 GCACCACCACCGGCTCTT 62.643 66.667 0.00 0.00 0.00 2.85
1054 1761 2.358737 CACCACCACCGGCTCTTC 60.359 66.667 0.00 0.00 0.00 2.87
1055 1762 2.526873 ACCACCACCGGCTCTTCT 60.527 61.111 0.00 0.00 0.00 2.85
1056 1763 2.046892 CCACCACCGGCTCTTCTG 60.047 66.667 0.00 0.00 0.00 3.02
1119 1826 0.106335 AGCCATGCCATCTCTTCTCG 59.894 55.000 0.00 0.00 0.00 4.04
1157 1864 1.971505 TTGATGTAGAGGCCTGGGCG 61.972 60.000 12.00 0.00 43.06 6.13
1222 1941 3.000041 TCGACACTGGCACAACAATATC 59.000 45.455 0.00 0.00 38.70 1.63
1474 2330 5.238650 TGCGTCTTTCTACTCGATCATGATA 59.761 40.000 8.54 0.00 0.00 2.15
1499 2384 3.523157 TCCTATTTTCTGATGGCAGGTCA 59.477 43.478 0.00 0.00 42.53 4.02
1550 2435 3.139029 CCTTCAGGGTTAGCGTCAC 57.861 57.895 0.00 0.00 0.00 3.67
1789 2674 2.430367 GAGGTTGCCTCCCGTGTT 59.570 61.111 3.89 0.00 44.36 3.32
1823 2708 1.748403 GATGAGTCCTATGGCGGCA 59.252 57.895 16.34 16.34 0.00 5.69
1844 2729 2.230660 GTGGAAAACACTTCTCCCTGG 58.769 52.381 0.00 0.00 46.72 4.45
1845 2730 1.144913 TGGAAAACACTTCTCCCTGGG 59.855 52.381 6.33 6.33 0.00 4.45
1846 2731 1.248486 GAAAACACTTCTCCCTGGGC 58.752 55.000 8.22 0.00 0.00 5.36
1847 2732 0.555769 AAAACACTTCTCCCTGGGCA 59.444 50.000 8.22 0.00 0.00 5.36
1848 2733 0.555769 AAACACTTCTCCCTGGGCAA 59.444 50.000 8.22 2.12 0.00 4.52
1849 2734 0.779997 AACACTTCTCCCTGGGCAAT 59.220 50.000 8.22 0.00 0.00 3.56
1850 2735 0.779997 ACACTTCTCCCTGGGCAATT 59.220 50.000 8.22 0.00 0.00 2.32
1851 2736 1.180029 CACTTCTCCCTGGGCAATTG 58.820 55.000 8.22 0.00 0.00 2.32
1852 2737 0.040204 ACTTCTCCCTGGGCAATTGG 59.960 55.000 8.22 0.00 0.00 3.16
1853 2738 1.305213 TTCTCCCTGGGCAATTGGC 60.305 57.895 23.06 23.06 43.74 4.52
1854 2739 3.142838 CTCCCTGGGCAATTGGCG 61.143 66.667 23.97 12.25 46.16 5.69
1855 2740 4.757355 TCCCTGGGCAATTGGCGG 62.757 66.667 23.97 19.74 46.16 6.13
1858 2743 4.137872 CTGGGCAATTGGCGGCAG 62.138 66.667 23.97 21.18 46.16 4.85
1859 2744 4.992740 TGGGCAATTGGCGGCAGT 62.993 61.111 23.97 6.43 46.16 4.40
1860 2745 4.440127 GGGCAATTGGCGGCAGTG 62.440 66.667 23.97 15.54 46.16 3.66
1861 2746 4.440127 GGCAATTGGCGGCAGTGG 62.440 66.667 16.95 14.47 46.16 4.00
1862 2747 3.372730 GCAATTGGCGGCAGTGGA 61.373 61.111 21.18 5.29 0.00 4.02
1863 2748 2.929903 GCAATTGGCGGCAGTGGAA 61.930 57.895 21.18 4.93 0.00 3.53
1864 2749 1.664873 CAATTGGCGGCAGTGGAAA 59.335 52.632 12.87 0.00 0.00 3.13
1865 2750 0.033228 CAATTGGCGGCAGTGGAAAA 59.967 50.000 12.87 0.00 0.00 2.29
1866 2751 0.033366 AATTGGCGGCAGTGGAAAAC 59.967 50.000 12.87 0.00 0.00 2.43
1867 2752 1.112315 ATTGGCGGCAGTGGAAAACA 61.112 50.000 12.87 0.00 0.00 2.83
1937 2822 2.665519 CGTGGATGAAAACCTCGCAAAG 60.666 50.000 0.00 0.00 38.83 2.77
1980 2865 0.948623 CCGACTTGTGAATGTGGCGA 60.949 55.000 0.00 0.00 0.00 5.54
1983 2868 0.249699 ACTTGTGAATGTGGCGACGA 60.250 50.000 0.00 0.00 0.00 4.20
2005 2890 1.278985 CTGGAGGCACTATGTGAACCA 59.721 52.381 1.52 6.39 41.55 3.67
2027 2912 4.065088 ACATGCTAGAACTTCTTGCGAAA 58.935 39.130 17.01 4.14 45.84 3.46
2034 2919 1.375551 ACTTCTTGCGAAACCGTTGT 58.624 45.000 0.00 0.00 0.00 3.32
2035 2920 1.063469 ACTTCTTGCGAAACCGTTGTG 59.937 47.619 0.00 0.00 0.00 3.33
2036 2921 1.063469 CTTCTTGCGAAACCGTTGTGT 59.937 47.619 0.00 0.00 0.00 3.72
2047 2932 2.846193 ACCGTTGTGTATGCACTCTTT 58.154 42.857 15.25 0.00 45.44 2.52
2077 2962 1.663445 GGATGTTCGATCGGAGCGTAG 60.663 57.143 16.41 0.00 0.00 3.51
2136 3021 3.053245 TGAACTAGAGAGGAGGAGGAAGG 60.053 52.174 0.00 0.00 0.00 3.46
2147 3032 3.339141 GAGGAGGAAGGTGACATTCAAC 58.661 50.000 12.26 4.92 33.32 3.18
2212 3097 0.884514 CACTGCTTCGAGACTCTCCA 59.115 55.000 0.03 0.00 0.00 3.86
2226 3111 0.548031 TCTCCACAATGATCTGCCCC 59.452 55.000 0.00 0.00 0.00 5.80
2229 3114 2.374504 CTCCACAATGATCTGCCCCTAT 59.625 50.000 0.00 0.00 0.00 2.57
2441 3326 4.255833 TCCAAGCGATTCAAGCAAAATT 57.744 36.364 0.00 0.00 37.01 1.82
2498 3383 1.093159 GCACTGCTGCTAGCTCATTT 58.907 50.000 17.23 1.73 42.97 2.32
2669 3557 5.523552 GCTTGTCAAAAGCAAGGTAATGTTT 59.476 36.000 0.00 0.00 42.44 2.83
2671 3559 7.413988 GCTTGTCAAAAGCAAGGTAATGTTTTT 60.414 33.333 0.00 0.00 42.17 1.94
2691 3579 6.635030 TTTTCTTTTTCTTCTAGCCTGTCC 57.365 37.500 0.00 0.00 0.00 4.02
2850 3740 1.299648 GCAGTACAGGATGCACCCA 59.700 57.895 0.00 0.00 42.53 4.51
3098 3988 1.967066 AGGTATGCTGCAGCTACCTAG 59.033 52.381 39.69 12.91 44.99 3.02
3104 3994 4.963318 TGCTGCAGCTACCTAGATATTT 57.037 40.909 36.61 0.00 42.66 1.40
3174 4066 5.305585 TCATCAGTTGACTAGTTTGGGTTC 58.694 41.667 0.00 0.00 0.00 3.62
3197 4099 6.846013 CGTGTGTACGGAGTCAGTTGACAT 62.846 50.000 14.17 0.28 45.38 3.06
3249 4151 0.035439 CATACAAGGCCCAAGTCCGT 60.035 55.000 0.00 0.00 0.00 4.69
3348 4250 2.670148 GGGTGCCGAGGAGGATGTT 61.670 63.158 0.00 0.00 45.00 2.71
3426 4328 1.376683 GAGGCGTACCAATGTGGCA 60.377 57.895 0.00 0.00 42.67 4.92
3535 4442 3.751479 TCTTGCTACTTCAGTTCTGCA 57.249 42.857 0.00 0.00 0.00 4.41
3559 4466 5.163513 CACTTCTGTTGCTGTGTTCTTTTT 58.836 37.500 0.00 0.00 0.00 1.94
3584 4491 2.494870 GCATTGCTTCTGGATTCTTGGT 59.505 45.455 0.16 0.00 0.00 3.67
3587 4494 3.726557 TGCTTCTGGATTCTTGGTGAT 57.273 42.857 0.00 0.00 0.00 3.06
3690 4598 1.407979 ACGACGACAAAGACCTCTGTT 59.592 47.619 0.00 0.00 0.00 3.16
3775 4683 4.522789 TCGTCTTGGTATATGCAGCTCATA 59.477 41.667 7.89 7.89 41.52 2.15
3815 4723 1.927487 AATCAATCCTTGGCACTGCA 58.073 45.000 2.82 0.00 0.00 4.41
3919 4834 5.320549 TCCAAGACGGACTAACTATGAAC 57.679 43.478 0.00 0.00 39.64 3.18
3924 4839 7.148120 CCAAGACGGACTAACTATGAACTTCTA 60.148 40.741 0.00 0.00 36.56 2.10
3948 4863 1.152902 GCAGGCATAGGGATGTGCA 60.153 57.895 0.00 0.00 43.00 4.57
3957 4872 2.046892 GGATGTGCACTGACCGCT 60.047 61.111 19.41 0.00 0.00 5.52
3974 4889 1.938577 CGCTGATGCAGTTGCTAATCT 59.061 47.619 5.62 0.00 42.66 2.40
3981 4896 5.884232 TGATGCAGTTGCTAATCTCTTTGAT 59.116 36.000 5.62 0.00 42.66 2.57
4057 4972 3.750501 TCCAAAAAGGAGGATTACCCC 57.249 47.619 0.00 0.00 43.07 4.95
4058 4973 2.313643 TCCAAAAAGGAGGATTACCCCC 59.686 50.000 0.00 0.00 43.07 5.40
4065 4980 2.447959 GGATTACCCCCGGCCTCT 60.448 66.667 0.00 0.00 0.00 3.69
4082 4997 2.862536 CCTCTGCATCAAGTGATACACG 59.137 50.000 0.00 0.00 39.64 4.49
4083 4998 2.270923 TCTGCATCAAGTGATACACGC 58.729 47.619 0.00 0.00 39.64 5.34
4211 5136 1.891919 GGAGTTTGGAGTGTGCGCA 60.892 57.895 5.66 5.66 0.00 6.09
4228 5153 1.016627 GCAGCAGCGGTGATATTTCA 58.983 50.000 20.69 0.00 32.22 2.69
4245 5185 4.848685 ACGTGTGTGAGGTGGAAC 57.151 55.556 0.00 0.00 0.00 3.62
4260 5200 6.443849 TGAGGTGGAACAGAAAGGATATTACT 59.556 38.462 0.00 0.00 41.80 2.24
4368 5386 4.703575 CCAGAAATGAAATTGAGGAGCTGA 59.296 41.667 0.00 0.00 36.10 4.26
4467 5503 4.797275 GCCATTGTTCTTTTGAGGGAACTG 60.797 45.833 0.00 0.00 44.43 3.16
4478 5514 2.301870 TGAGGGAACTGCATTACTCGTT 59.698 45.455 0.00 0.00 44.43 3.85
4530 5576 1.482182 ACCGTGCATCTAGATGAAGCA 59.518 47.619 32.38 21.62 45.58 3.91
4557 5603 7.389232 AGTTAGAATGTCATTCACATGTCTGA 58.611 34.615 24.13 0.00 45.77 3.27
4559 5605 6.492007 AGAATGTCATTCACATGTCTGAAC 57.508 37.500 24.13 0.00 45.77 3.18
4562 5608 4.707105 TGTCATTCACATGTCTGAACAGT 58.293 39.130 0.00 0.00 39.20 3.55
4575 5629 3.323115 TCTGAACAGTCTCAGTTGCTCAT 59.677 43.478 10.65 0.00 42.93 2.90
4576 5630 4.063689 CTGAACAGTCTCAGTTGCTCATT 58.936 43.478 0.00 0.00 38.43 2.57
4612 5666 9.595823 TTCCTTACTATTCATTGTACTTGCTAC 57.404 33.333 0.00 0.00 0.00 3.58
4617 5671 7.394816 ACTATTCATTGTACTTGCTACTTGGT 58.605 34.615 0.00 0.00 0.00 3.67
4624 5678 8.765219 CATTGTACTTGCTACTTGGTACATATC 58.235 37.037 0.00 0.00 42.28 1.63
4628 5682 6.736123 ACTTGCTACTTGGTACATATCTACG 58.264 40.000 0.00 0.00 39.30 3.51
4633 5687 8.150296 TGCTACTTGGTACATATCTACGTACTA 58.850 37.037 0.00 0.00 39.30 1.82
4649 5703 9.392259 TCTACGTACTATAGATTCATGGTATGG 57.608 37.037 6.78 0.00 34.74 2.74
4675 5761 3.181466 TGACACTTGAAAGCTGCTAGTCA 60.181 43.478 0.90 7.24 0.00 3.41
4676 5762 3.999663 GACACTTGAAAGCTGCTAGTCAT 59.000 43.478 14.50 2.78 0.00 3.06
4677 5763 3.999663 ACACTTGAAAGCTGCTAGTCATC 59.000 43.478 14.50 5.04 0.00 2.92
4679 5765 2.698855 TGAAAGCTGCTAGTCATCCC 57.301 50.000 0.90 0.00 0.00 3.85
4680 5766 2.191400 TGAAAGCTGCTAGTCATCCCT 58.809 47.619 0.90 0.00 0.00 4.20
4684 5780 1.209019 AGCTGCTAGTCATCCCTTGTG 59.791 52.381 0.00 0.00 0.00 3.33
4686 5782 2.616510 GCTGCTAGTCATCCCTTGTGTT 60.617 50.000 0.00 0.00 0.00 3.32
4688 5784 3.411446 TGCTAGTCATCCCTTGTGTTTG 58.589 45.455 0.00 0.00 0.00 2.93
4706 5802 3.428746 TTGTATGCTTGTGTTGCGTTT 57.571 38.095 0.00 0.00 0.00 3.60
4711 5807 1.202132 TGCTTGTGTTGCGTTTCAGTC 60.202 47.619 0.00 0.00 0.00 3.51
4718 5814 5.720202 TGTGTTGCGTTTCAGTCTCTATAT 58.280 37.500 0.00 0.00 0.00 0.86
4719 5815 5.576774 TGTGTTGCGTTTCAGTCTCTATATG 59.423 40.000 0.00 0.00 0.00 1.78
4720 5816 5.005779 GTGTTGCGTTTCAGTCTCTATATGG 59.994 44.000 0.00 0.00 0.00 2.74
4721 5817 3.717707 TGCGTTTCAGTCTCTATATGGC 58.282 45.455 0.00 0.00 0.00 4.40
4735 5831 6.538742 TCTCTATATGGCTGTGTTGCTTTTAC 59.461 38.462 0.00 0.00 0.00 2.01
4741 5837 2.360801 GCTGTGTTGCTTTTACCAAGGA 59.639 45.455 0.00 0.00 0.00 3.36
4749 5845 2.758009 CTTTTACCAAGGAACGTCCGA 58.242 47.619 0.00 0.00 42.75 4.55
4768 5864 3.016736 CGACTTGGATGGCCTTATGTTT 58.983 45.455 3.32 0.00 34.31 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.996480 ACGAAGGAAGAGGAAAAGACTG 58.004 45.455 0.00 0.00 0.00 3.51
185 270 7.075148 TCCCATATGAGCCCTAAATTGATTTT 58.925 34.615 3.65 0.00 0.00 1.82
208 293 0.324645 ATTCACACAGCCCCCAATCC 60.325 55.000 0.00 0.00 0.00 3.01
229 314 2.254546 TCCGGCCACTGCATAATTAG 57.745 50.000 2.24 0.00 40.13 1.73
232 317 0.183492 ACATCCGGCCACTGCATAAT 59.817 50.000 2.24 0.00 40.13 1.28
241 326 0.326595 ACAATGTGTACATCCGGCCA 59.673 50.000 2.24 0.00 35.10 5.36
243 328 1.448985 ACACAATGTGTACATCCGGC 58.551 50.000 18.40 0.00 45.56 6.13
244 329 3.252215 ACAAACACAATGTGTACATCCGG 59.748 43.478 20.16 0.00 46.79 5.14
245 330 4.481930 ACAAACACAATGTGTACATCCG 57.518 40.909 20.16 7.23 46.79 4.18
285 370 9.287373 TCGATAAAGGGTGTGTTTTATTAACTT 57.713 29.630 0.00 0.00 31.50 2.66
326 422 4.930696 ACGGTGAATTTAGAAAATCCCCT 58.069 39.130 0.00 0.00 0.00 4.79
337 433 3.935828 TGATCGCATCAACGGTGAATTTA 59.064 39.130 7.51 0.00 37.30 1.40
367 463 0.030773 GCTAGATCGATGTCCGTGCA 59.969 55.000 0.54 0.00 39.75 4.57
416 686 7.653713 CAGAAATCCTATTAGTACGCTGACAAT 59.346 37.037 0.00 0.00 0.00 2.71
417 687 6.978659 CAGAAATCCTATTAGTACGCTGACAA 59.021 38.462 0.00 0.00 0.00 3.18
420 691 6.710597 ACAGAAATCCTATTAGTACGCTGA 57.289 37.500 0.00 0.00 0.00 4.26
455 726 6.073222 CCATACAAATAAGGGATACGAAGTGC 60.073 42.308 0.00 0.00 45.73 4.40
458 729 6.990349 ACACCATACAAATAAGGGATACGAAG 59.010 38.462 0.00 0.00 37.60 3.79
459 730 6.891388 ACACCATACAAATAAGGGATACGAA 58.109 36.000 0.00 0.00 37.60 3.85
462 733 8.747538 AAGAACACCATACAAATAAGGGATAC 57.252 34.615 0.00 0.00 0.00 2.24
463 734 9.403583 GAAAGAACACCATACAAATAAGGGATA 57.596 33.333 0.00 0.00 0.00 2.59
464 735 8.116026 AGAAAGAACACCATACAAATAAGGGAT 58.884 33.333 0.00 0.00 0.00 3.85
466 737 7.393234 TGAGAAAGAACACCATACAAATAAGGG 59.607 37.037 0.00 0.00 0.00 3.95
467 738 8.335532 TGAGAAAGAACACCATACAAATAAGG 57.664 34.615 0.00 0.00 0.00 2.69
471 742 7.233348 ACCAATGAGAAAGAACACCATACAAAT 59.767 33.333 0.00 0.00 0.00 2.32
472 743 6.549364 ACCAATGAGAAAGAACACCATACAAA 59.451 34.615 0.00 0.00 0.00 2.83
474 745 5.630121 ACCAATGAGAAAGAACACCATACA 58.370 37.500 0.00 0.00 0.00 2.29
475 746 6.016276 ACAACCAATGAGAAAGAACACCATAC 60.016 38.462 0.00 0.00 0.00 2.39
476 747 6.068010 ACAACCAATGAGAAAGAACACCATA 58.932 36.000 0.00 0.00 0.00 2.74
477 748 4.895297 ACAACCAATGAGAAAGAACACCAT 59.105 37.500 0.00 0.00 0.00 3.55
525 796 2.218603 CGGTCCAGCACAAGTTTACTT 58.781 47.619 0.00 0.00 36.45 2.24
526 797 1.140252 ACGGTCCAGCACAAGTTTACT 59.860 47.619 0.00 0.00 0.00 2.24
527 798 1.263217 CACGGTCCAGCACAAGTTTAC 59.737 52.381 0.00 0.00 0.00 2.01
573 848 0.231534 CATCGATCGATGCACACAGC 59.768 55.000 37.03 0.00 44.27 4.40
700 1400 7.724061 AGTGAAAGTTGTTGGTATCACCTTAAT 59.276 33.333 0.00 0.00 39.58 1.40
783 1483 1.521840 CGCAATGCAGAGAAGAGATCG 59.478 52.381 5.91 0.00 0.00 3.69
819 1519 2.351276 GATCACTTGGCCACCGGT 59.649 61.111 3.88 0.00 0.00 5.28
952 1659 1.896660 TCCAAGTCTTTGTGGCGGC 60.897 57.895 0.00 0.00 34.68 6.53
1022 1729 2.750888 GGTGCCTTCGCCATCGTTC 61.751 63.158 0.00 0.00 42.42 3.95
1052 1759 9.770097 GTATTGTCCATATCTTCAGAATCAGAA 57.230 33.333 0.00 0.00 0.00 3.02
1053 1760 9.152327 AGTATTGTCCATATCTTCAGAATCAGA 57.848 33.333 0.00 0.00 0.00 3.27
1054 1761 9.205719 CAGTATTGTCCATATCTTCAGAATCAG 57.794 37.037 0.00 0.00 0.00 2.90
1055 1762 8.708378 ACAGTATTGTCCATATCTTCAGAATCA 58.292 33.333 0.00 0.00 29.46 2.57
1056 1763 9.202273 GACAGTATTGTCCATATCTTCAGAATC 57.798 37.037 7.11 0.00 46.47 2.52
1164 1871 9.884465 TGCATTTTTCTTTTCTTTTTCGAAAAA 57.116 22.222 28.86 28.86 43.42 1.94
1202 1921 2.741517 TGATATTGTTGTGCCAGTGTCG 59.258 45.455 0.00 0.00 0.00 4.35
1222 1941 0.392998 ACCCGACAGCAGCCTTATTG 60.393 55.000 0.00 0.00 0.00 1.90
1253 2101 5.511729 CACTTCTTTTTGACCTTGTCGTTTC 59.488 40.000 0.00 0.00 34.95 2.78
1474 2330 4.018050 ACCTGCCATCAGAAAATAGGAACT 60.018 41.667 0.00 0.00 42.95 3.01
1499 2384 1.679680 CAATGAATTGCGATCCTGGCT 59.320 47.619 0.00 0.00 0.00 4.75
1550 2435 2.263741 GGCCATCCAGCGCCTTATG 61.264 63.158 2.29 5.03 42.21 1.90
1842 2727 4.992740 ACTGCCGCCAATTGCCCA 62.993 61.111 0.00 0.00 36.24 5.36
1843 2728 4.440127 CACTGCCGCCAATTGCCC 62.440 66.667 0.00 0.00 36.24 5.36
1844 2729 4.440127 CCACTGCCGCCAATTGCC 62.440 66.667 0.00 0.00 36.24 4.52
1845 2730 2.433231 TTTCCACTGCCGCCAATTGC 62.433 55.000 0.00 0.00 0.00 3.56
1846 2731 0.033228 TTTTCCACTGCCGCCAATTG 59.967 50.000 0.00 0.00 0.00 2.32
1847 2732 0.033366 GTTTTCCACTGCCGCCAATT 59.967 50.000 0.00 0.00 0.00 2.32
1848 2733 1.112315 TGTTTTCCACTGCCGCCAAT 61.112 50.000 0.00 0.00 0.00 3.16
1849 2734 1.754621 TGTTTTCCACTGCCGCCAA 60.755 52.632 0.00 0.00 0.00 4.52
1850 2735 2.124109 TGTTTTCCACTGCCGCCA 60.124 55.556 0.00 0.00 0.00 5.69
1851 2736 2.335011 GTGTTTTCCACTGCCGCC 59.665 61.111 0.00 0.00 41.11 6.13
1858 2743 2.230660 CCAGGGAGAAGTGTTTTCCAC 58.769 52.381 0.00 0.00 44.89 4.02
1859 2744 1.144913 CCCAGGGAGAAGTGTTTTCCA 59.855 52.381 0.00 0.00 32.50 3.53
1860 2745 1.911057 CCCAGGGAGAAGTGTTTTCC 58.089 55.000 0.00 0.00 0.00 3.13
1861 2746 1.248486 GCCCAGGGAGAAGTGTTTTC 58.752 55.000 10.89 0.00 0.00 2.29
1862 2747 0.555769 TGCCCAGGGAGAAGTGTTTT 59.444 50.000 10.89 0.00 0.00 2.43
1863 2748 0.555769 TTGCCCAGGGAGAAGTGTTT 59.444 50.000 10.89 0.00 0.00 2.83
1864 2749 0.779997 ATTGCCCAGGGAGAAGTGTT 59.220 50.000 10.89 0.00 0.00 3.32
1865 2750 0.038744 CATTGCCCAGGGAGAAGTGT 59.961 55.000 10.89 0.00 0.00 3.55
1866 2751 0.038744 ACATTGCCCAGGGAGAAGTG 59.961 55.000 10.89 3.37 0.00 3.16
1867 2752 0.329596 GACATTGCCCAGGGAGAAGT 59.670 55.000 10.89 1.04 0.00 3.01
1868 2753 0.745845 CGACATTGCCCAGGGAGAAG 60.746 60.000 10.89 0.00 0.00 2.85
1869 2754 1.299648 CGACATTGCCCAGGGAGAA 59.700 57.895 10.89 0.30 0.00 2.87
1870 2755 1.918293 ACGACATTGCCCAGGGAGA 60.918 57.895 10.89 0.00 0.00 3.71
1871 2756 1.746615 CACGACATTGCCCAGGGAG 60.747 63.158 10.89 0.00 0.00 4.30
1872 2757 2.063015 AACACGACATTGCCCAGGGA 62.063 55.000 10.89 0.00 0.00 4.20
1873 2758 1.603455 AACACGACATTGCCCAGGG 60.603 57.895 0.00 0.00 0.00 4.45
1874 2759 1.172180 ACAACACGACATTGCCCAGG 61.172 55.000 0.00 0.00 0.00 4.45
1875 2760 0.667993 AACAACACGACATTGCCCAG 59.332 50.000 0.00 0.00 0.00 4.45
1937 2822 1.212616 CACGCCGATCCAAGAAGATC 58.787 55.000 0.00 0.00 39.47 2.75
1980 2865 0.972983 ACATAGTGCCTCCAGCTCGT 60.973 55.000 0.00 0.00 44.23 4.18
1983 2868 1.065854 GTTCACATAGTGCCTCCAGCT 60.066 52.381 0.00 0.00 44.23 4.24
2034 2919 7.847096 TCCTTAAGATACAAAGAGTGCATACA 58.153 34.615 3.36 0.00 0.00 2.29
2035 2920 8.768955 CATCCTTAAGATACAAAGAGTGCATAC 58.231 37.037 3.36 0.00 32.37 2.39
2036 2921 8.486210 ACATCCTTAAGATACAAAGAGTGCATA 58.514 33.333 3.36 0.00 32.37 3.14
2047 2932 5.533528 TCCGATCGAACATCCTTAAGATACA 59.466 40.000 18.66 0.00 32.37 2.29
2077 2962 0.385390 CAGCCGCAAAATATCACCCC 59.615 55.000 0.00 0.00 0.00 4.95
2212 3097 1.349026 CGGATAGGGGCAGATCATTGT 59.651 52.381 0.00 0.00 0.00 2.71
2226 3111 6.153680 AGGTAATCAAATCTCCTAGCGGATAG 59.846 42.308 0.00 0.00 39.01 2.08
2229 3114 4.039245 CAGGTAATCAAATCTCCTAGCGGA 59.961 45.833 0.00 0.00 37.82 5.54
2318 3203 4.097286 CCGTTTTTGAAGAAGAGTTTCCCA 59.903 41.667 0.00 0.00 33.64 4.37
2441 3326 4.921515 GCATTGTTCAGTACGTAGTCTTCA 59.078 41.667 0.00 0.00 43.93 3.02
2451 3336 3.000041 TGATCGTGGCATTGTTCAGTAC 59.000 45.455 0.00 0.00 0.00 2.73
2669 3557 4.755123 CGGACAGGCTAGAAGAAAAAGAAA 59.245 41.667 0.00 0.00 0.00 2.52
2671 3559 3.323979 ACGGACAGGCTAGAAGAAAAAGA 59.676 43.478 0.00 0.00 0.00 2.52
2691 3579 1.239296 TACACCAGGACTGACCGACG 61.239 60.000 0.00 0.00 44.74 5.12
2850 3740 5.196695 GAGATGGGGAACTTGCTTATTTCT 58.803 41.667 0.00 0.00 0.00 2.52
3098 3988 8.768957 TGATGAATCTACAGCTGCTAAATATC 57.231 34.615 15.27 10.48 0.00 1.63
3104 3994 5.733676 TGTTTGATGAATCTACAGCTGCTA 58.266 37.500 15.27 4.75 0.00 3.49
3174 4066 3.166638 GTCAACTGACTCCGTACACACG 61.167 54.545 2.51 0.00 43.38 4.49
3197 4099 1.432514 CACGCTGAGCTTGCTTCTTA 58.567 50.000 1.78 0.00 0.00 2.10
3231 4133 0.035439 CACGGACTTGGGCCTTGTAT 60.035 55.000 4.53 0.00 0.00 2.29
3249 4151 1.617536 AAGGCTCTCCTGGATGGCA 60.618 57.895 19.85 0.00 43.40 4.92
3348 4250 1.215382 CACGGCGGAGAAGATGACA 59.785 57.895 13.24 0.00 0.00 3.58
3426 4328 1.077357 TCACTTGGCCCGTGTTTGT 60.077 52.632 18.46 0.00 34.14 2.83
3535 4442 2.991250 AGAACACAGCAACAGAAGTGT 58.009 42.857 0.00 0.00 46.24 3.55
3559 4466 2.025605 AGAATCCAGAAGCAATGCCTGA 60.026 45.455 12.07 0.00 0.00 3.86
3584 4491 1.803922 CGACAACGTAGCCGCATCA 60.804 57.895 0.00 0.00 37.70 3.07
3587 4494 2.126618 CTCGACAACGTAGCCGCA 60.127 61.111 0.00 0.00 40.69 5.69
3690 4598 4.700365 CGCGACGCTCACCACAGA 62.700 66.667 19.02 0.00 0.00 3.41
3714 4622 2.872038 GCAGACGGTTGACTTCATCCTT 60.872 50.000 5.08 0.00 34.39 3.36
3775 4683 7.735917 TGATTTACTCGATCATACCCAAGATT 58.264 34.615 0.00 0.00 0.00 2.40
3912 4827 3.871594 CCTGCCCGTTTAGAAGTTCATAG 59.128 47.826 5.50 0.00 0.00 2.23
3919 4834 2.213499 CTATGCCTGCCCGTTTAGAAG 58.787 52.381 0.00 0.00 0.00 2.85
3924 4839 1.645402 ATCCCTATGCCTGCCCGTTT 61.645 55.000 0.00 0.00 0.00 3.60
3957 4872 5.247862 TCAAAGAGATTAGCAACTGCATCA 58.752 37.500 4.22 0.00 45.16 3.07
4037 4952 3.750501 GGGGTAATCCTCCTTTTTGGA 57.249 47.619 0.00 0.00 43.86 3.53
4057 4972 2.110967 CACTTGATGCAGAGGCCGG 61.111 63.158 0.00 0.00 40.13 6.13
4058 4973 0.463295 ATCACTTGATGCAGAGGCCG 60.463 55.000 0.00 0.00 40.13 6.13
4065 4980 2.001872 CTGCGTGTATCACTTGATGCA 58.998 47.619 5.96 5.96 43.23 3.96
4082 4997 1.276421 TGGCTCTGTAAGTTCCTCTGC 59.724 52.381 0.00 0.00 33.76 4.26
4083 4998 3.055530 ACATGGCTCTGTAAGTTCCTCTG 60.056 47.826 0.00 0.00 33.76 3.35
4228 5153 0.179084 CTGTTCCACCTCACACACGT 60.179 55.000 0.00 0.00 0.00 4.49
4230 5170 2.325583 TTCTGTTCCACCTCACACAC 57.674 50.000 0.00 0.00 0.00 3.82
4260 5200 9.391006 CAAAACTAATCAGCTACCAGGTAATAA 57.609 33.333 0.00 0.00 0.00 1.40
4280 5220 5.701290 CCTCTTACGATCAAGAACCAAAACT 59.299 40.000 0.00 0.00 34.22 2.66
4345 5363 4.703575 TCAGCTCCTCAATTTCATTTCTGG 59.296 41.667 0.00 0.00 0.00 3.86
4412 5448 1.949525 CCCAAGGCTTTCATATCACCG 59.050 52.381 0.00 0.00 0.00 4.94
4467 5503 4.192317 AGAGGGAATTCAACGAGTAATGC 58.808 43.478 7.93 0.00 0.00 3.56
4493 5530 1.701704 GGTAACACTTGCATTGCAGC 58.298 50.000 11.76 0.00 40.61 5.25
4498 5535 1.313772 TGCACGGTAACACTTGCATT 58.686 45.000 0.00 0.00 40.01 3.56
4530 5576 9.322773 CAGACATGTGAATGACATTCTAACTAT 57.677 33.333 24.80 11.56 43.20 2.12
4533 5579 7.601073 TCAGACATGTGAATGACATTCTAAC 57.399 36.000 24.80 17.31 43.20 2.34
4536 5582 5.999600 TGTTCAGACATGTGAATGACATTCT 59.000 36.000 24.80 7.96 43.20 2.40
4557 5603 2.551459 GCAATGAGCAACTGAGACTGTT 59.449 45.455 0.00 0.00 44.79 3.16
4559 5605 2.896243 GCAATGAGCAACTGAGACTG 57.104 50.000 0.00 0.00 44.79 3.51
4601 5655 7.655521 AGATATGTACCAAGTAGCAAGTACA 57.344 36.000 4.51 4.51 46.45 2.90
4624 5678 9.392259 TCCATACCATGAATCTATAGTACGTAG 57.608 37.037 0.00 2.89 0.00 3.51
4633 5687 8.443176 AGTGTCAATTCCATACCATGAATCTAT 58.557 33.333 0.00 0.00 0.00 1.98
4636 5690 6.949352 AGTGTCAATTCCATACCATGAATC 57.051 37.500 0.00 0.00 0.00 2.52
4645 5699 5.335897 GCAGCTTTCAAGTGTCAATTCCATA 60.336 40.000 0.00 0.00 0.00 2.74
4649 5703 4.234530 AGCAGCTTTCAAGTGTCAATTC 57.765 40.909 0.00 0.00 0.00 2.17
4675 5761 4.022068 CACAAGCATACAAACACAAGGGAT 60.022 41.667 0.00 0.00 0.00 3.85
4676 5762 3.317711 CACAAGCATACAAACACAAGGGA 59.682 43.478 0.00 0.00 0.00 4.20
4677 5763 3.068024 ACACAAGCATACAAACACAAGGG 59.932 43.478 0.00 0.00 0.00 3.95
4679 5765 4.026640 GCAACACAAGCATACAAACACAAG 60.027 41.667 0.00 0.00 0.00 3.16
4680 5766 3.862267 GCAACACAAGCATACAAACACAA 59.138 39.130 0.00 0.00 0.00 3.33
4684 5780 2.726633 ACGCAACACAAGCATACAAAC 58.273 42.857 0.00 0.00 0.00 2.93
4686 5782 3.181496 TGAAACGCAACACAAGCATACAA 60.181 39.130 0.00 0.00 0.00 2.41
4688 5784 2.973224 CTGAAACGCAACACAAGCATAC 59.027 45.455 0.00 0.00 0.00 2.39
4706 5802 4.442052 GCAACACAGCCATATAGAGACTGA 60.442 45.833 0.00 0.00 32.67 3.41
4711 5807 5.824904 AAAAGCAACACAGCCATATAGAG 57.175 39.130 0.00 0.00 34.23 2.43
4718 5814 1.769026 TGGTAAAAGCAACACAGCCA 58.231 45.000 0.00 0.00 34.23 4.75
4719 5815 2.545742 CCTTGGTAAAAGCAACACAGCC 60.546 50.000 0.00 0.00 31.65 4.85
4720 5816 2.360801 TCCTTGGTAAAAGCAACACAGC 59.639 45.455 0.00 0.00 31.65 4.40
4721 5817 4.359706 GTTCCTTGGTAAAAGCAACACAG 58.640 43.478 0.00 0.00 31.65 3.66
4735 5831 0.949105 CCAAGTCGGACGTTCCTTGG 60.949 60.000 15.06 15.06 45.61 3.61



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.