Multiple sequence alignment - TraesCS5A01G441500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5A01G441500
chr5A
100.000
4816
0
0
1
4816
622295143
622299958
0.000000e+00
8894.0
1
TraesCS5A01G441500
chr5A
84.586
1570
184
35
2355
3903
622363017
622364549
0.000000e+00
1506.0
2
TraesCS5A01G441500
chr5A
85.922
824
84
15
373
1178
622339514
622340323
0.000000e+00
850.0
3
TraesCS5A01G441500
chr5A
85.831
614
80
6
1243
1850
622340529
622341141
0.000000e+00
645.0
4
TraesCS5A01G441500
chr5A
79.109
359
41
14
4297
4628
622364888
622365239
2.920000e-52
217.0
5
TraesCS5A01G441500
chr5A
92.958
71
4
1
1
70
622339191
622339261
8.530000e-18
102.0
6
TraesCS5A01G441500
chr5A
100.000
34
0
0
1851
1884
622296959
622296992
4.020000e-06
63.9
7
TraesCS5A01G441500
chr5A
100.000
34
0
0
1817
1850
622296993
622297026
4.020000e-06
63.9
8
TraesCS5A01G441500
chr5B
94.945
2176
109
1
1851
4026
617429568
617431742
0.000000e+00
3408.0
9
TraesCS5A01G441500
chr5B
93.023
1290
60
9
585
1850
617428318
617429601
0.000000e+00
1857.0
10
TraesCS5A01G441500
chr5B
85.519
511
30
13
103
594
617427426
617427911
1.200000e-135
494.0
11
TraesCS5A01G441500
chr5B
75.351
499
57
36
4357
4811
617432029
617432505
3.830000e-41
180.0
12
TraesCS5A01G441500
chr5B
92.079
101
2
3
1
101
617427282
617427376
2.340000e-28
137.0
13
TraesCS5A01G441500
chr5D
94.521
2117
99
8
1852
3960
498109182
498111289
0.000000e+00
3251.0
14
TraesCS5A01G441500
chr5D
93.411
1290
55
8
585
1850
498107931
498109214
0.000000e+00
1884.0
15
TraesCS5A01G441500
chr5D
85.203
419
30
18
4003
4393
498111295
498111709
7.510000e-108
401.0
16
TraesCS5A01G441500
chr5D
93.452
168
8
1
103
270
498106863
498107027
3.720000e-61
246.0
17
TraesCS5A01G441500
chr5D
84.878
205
14
7
391
594
498107333
498107521
1.770000e-44
191.0
18
TraesCS5A01G441500
chr5D
94.118
102
2
1
1
102
498106717
498106814
8.350000e-33
152.0
19
TraesCS5A01G441500
chr6D
72.503
931
208
34
2525
3447
343311118
343310228
1.720000e-64
257.0
20
TraesCS5A01G441500
chr6D
89.474
57
4
2
4032
4086
5250916
5250972
2.400000e-08
71.3
21
TraesCS5A01G441500
chr6B
73.333
555
124
17
2525
3069
518037978
518037438
2.960000e-42
183.0
22
TraesCS5A01G441500
chr2D
94.545
55
2
1
4032
4086
11258731
11258784
3.090000e-12
84.2
23
TraesCS5A01G441500
chr2D
91.071
56
4
1
4031
4086
14742436
14742382
1.860000e-09
75.0
24
TraesCS5A01G441500
chr4A
92.453
53
4
0
4033
4085
481414029
481413977
5.170000e-10
76.8
25
TraesCS5A01G441500
chr4A
90.909
55
5
0
4032
4086
664892767
664892821
1.860000e-09
75.0
26
TraesCS5A01G441500
chr7B
90.909
55
5
0
4032
4086
529195770
529195716
1.860000e-09
75.0
27
TraesCS5A01G441500
chr6A
90.909
55
5
0
4032
4086
58811567
58811513
1.860000e-09
75.0
28
TraesCS5A01G441500
chr7D
89.655
58
3
3
4031
4086
530760068
530760012
2.400000e-08
71.3
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5A01G441500
chr5A
622295143
622299958
4815
False
3007.266667
8894
100.0000
1
4816
3
chr5A.!!$F1
4815
1
TraesCS5A01G441500
chr5A
622363017
622365239
2222
False
861.500000
1506
81.8475
2355
4628
2
chr5A.!!$F3
2273
2
TraesCS5A01G441500
chr5A
622339191
622341141
1950
False
532.333333
850
88.2370
1
1850
3
chr5A.!!$F2
1849
3
TraesCS5A01G441500
chr5B
617427282
617432505
5223
False
1215.200000
3408
88.1834
1
4811
5
chr5B.!!$F1
4810
4
TraesCS5A01G441500
chr5D
498106717
498111709
4992
False
1020.833333
3251
90.9305
1
4393
6
chr5D.!!$F1
4392
5
TraesCS5A01G441500
chr6D
343310228
343311118
890
True
257.000000
257
72.5030
2525
3447
1
chr6D.!!$R1
922
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
467
738
0.175760
TGAGGCTGCACTTCGTATCC
59.824
55.0
0.50
0.0
0.0
2.59
F
1119
1826
0.106335
AGCCATGCCATCTCTTCTCG
59.894
55.0
0.00
0.0
0.0
4.04
F
1865
2750
0.033228
CAATTGGCGGCAGTGGAAAA
59.967
50.0
12.87
0.0
0.0
2.29
F
1866
2751
0.033366
AATTGGCGGCAGTGGAAAAC
59.967
50.0
12.87
0.0
0.0
2.43
F
3249
4151
0.035439
CATACAAGGCCCAAGTCCGT
60.035
55.0
0.00
0.0
0.0
4.69
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1846
2731
0.033228
TTTTCCACTGCCGCCAATTG
59.967
50.000
0.00
0.0
0.00
2.32
R
2077
2962
0.385390
CAGCCGCAAAATATCACCCC
59.615
55.000
0.00
0.0
0.00
4.95
R
3231
4133
0.035439
CACGGACTTGGGCCTTGTAT
60.035
55.000
4.53
0.0
0.00
2.29
R
3426
4328
1.077357
TCACTTGGCCCGTGTTTGT
60.077
52.632
18.46
0.0
34.14
2.83
R
4228
5153
0.179084
CTGTTCCACCTCACACACGT
60.179
55.000
0.00
0.0
0.00
4.49
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
38
39
3.074412
TGATTTCTTCAAGAACGAGGCC
58.926
45.455
0.00
0.00
33.26
5.19
208
293
7.954835
TCAAAATCAATTTAGGGCTCATATGG
58.045
34.615
2.13
0.00
0.00
2.74
229
314
0.324645
ATTGGGGGCTGTGTGAATCC
60.325
55.000
0.00
0.00
0.00
3.01
232
317
0.623723
GGGGGCTGTGTGAATCCTAA
59.376
55.000
0.00
0.00
0.00
2.69
241
326
5.297776
GCTGTGTGAATCCTAATTATGCAGT
59.702
40.000
0.00
0.00
0.00
4.40
243
328
5.589855
TGTGTGAATCCTAATTATGCAGTGG
59.410
40.000
0.00
0.00
0.00
4.00
244
329
4.580167
TGTGAATCCTAATTATGCAGTGGC
59.420
41.667
0.00
0.00
41.68
5.01
245
330
4.022849
GTGAATCCTAATTATGCAGTGGCC
60.023
45.833
0.00
0.00
40.13
5.36
265
350
3.820689
CCGGATGTACACATTGTGTTTG
58.179
45.455
26.16
10.62
45.08
2.93
270
355
7.081349
CGGATGTACACATTGTGTTTGTATTT
58.919
34.615
26.16
6.38
45.08
1.40
272
357
8.698854
GGATGTACACATTGTGTTTGTATTTTG
58.301
33.333
26.16
0.00
45.08
2.44
280
365
7.710044
ACATTGTGTTTGTATTTTGATGCTTCA
59.290
29.630
0.00
0.00
0.00
3.02
283
368
9.755804
TTGTGTTTGTATTTTGATGCTTCATTA
57.244
25.926
2.75
0.00
0.00
1.90
326
422
7.782644
ACCCTTTATCGAAAAATATGGGATTGA
59.217
33.333
16.62
0.00
33.22
2.57
337
433
5.955850
ATATGGGATTGAGGGGATTTTCT
57.044
39.130
0.00
0.00
0.00
2.52
347
443
4.947388
TGAGGGGATTTTCTAAATTCACCG
59.053
41.667
11.17
0.00
43.31
4.94
349
445
5.330233
AGGGGATTTTCTAAATTCACCGTT
58.670
37.500
11.17
0.00
43.31
4.44
367
463
2.349580
CGTTGATGCGATCACATTCAGT
59.650
45.455
0.00
0.00
39.39
3.41
416
686
4.634004
GCCGTTATTGCACATGGCTATATA
59.366
41.667
13.53
0.00
45.15
0.86
417
687
5.296780
GCCGTTATTGCACATGGCTATATAT
59.703
40.000
13.53
0.00
45.15
0.86
420
691
7.148255
CCGTTATTGCACATGGCTATATATTGT
60.148
37.037
0.00
0.00
45.15
2.71
440
711
7.948278
ATTGTCAGCGTACTAATAGGATTTC
57.052
36.000
0.00
0.00
0.00
2.17
455
726
2.159282
GGATTTCTGTTGCATGAGGCTG
60.159
50.000
0.00
0.00
45.15
4.85
462
733
2.036571
TGCATGAGGCTGCACTTCG
61.037
57.895
0.50
0.00
46.76
3.79
463
734
2.037136
GCATGAGGCTGCACTTCGT
61.037
57.895
0.50
0.00
41.87
3.85
464
735
0.740868
GCATGAGGCTGCACTTCGTA
60.741
55.000
0.50
0.00
41.87
3.43
466
737
1.863454
CATGAGGCTGCACTTCGTATC
59.137
52.381
0.50
0.00
0.00
2.24
467
738
0.175760
TGAGGCTGCACTTCGTATCC
59.824
55.000
0.50
0.00
0.00
2.59
468
739
0.530870
GAGGCTGCACTTCGTATCCC
60.531
60.000
0.50
0.00
0.00
3.85
469
740
0.978146
AGGCTGCACTTCGTATCCCT
60.978
55.000
0.50
0.00
0.00
4.20
471
742
1.138266
GGCTGCACTTCGTATCCCTTA
59.862
52.381
0.50
0.00
0.00
2.69
472
743
2.224305
GGCTGCACTTCGTATCCCTTAT
60.224
50.000
0.50
0.00
0.00
1.73
474
745
3.877508
GCTGCACTTCGTATCCCTTATTT
59.122
43.478
0.00
0.00
0.00
1.40
475
746
4.260784
GCTGCACTTCGTATCCCTTATTTG
60.261
45.833
0.00
0.00
0.00
2.32
476
747
4.839121
TGCACTTCGTATCCCTTATTTGT
58.161
39.130
0.00
0.00
0.00
2.83
477
748
5.979993
TGCACTTCGTATCCCTTATTTGTA
58.020
37.500
0.00
0.00
0.00
2.41
516
787
4.274147
TGGTTGTTCTGTCTGGCTTTTTA
58.726
39.130
0.00
0.00
0.00
1.52
573
848
2.404693
CGTTGCAACAATTGATTGACGG
59.595
45.455
28.01
4.26
40.14
4.79
700
1400
7.634671
ATGTATGTGCTTCATTTCATTCAGA
57.365
32.000
0.89
0.00
37.91
3.27
747
1447
0.398098
CGGTAGAGGGGTACATGGGT
60.398
60.000
0.00
0.00
0.00
4.51
783
1483
1.936547
CTATTGGAAGAAGCTCGTGCC
59.063
52.381
5.73
0.00
40.80
5.01
791
1491
0.179124
GAAGCTCGTGCCGATCTCTT
60.179
55.000
5.73
4.76
40.80
2.85
905
1612
0.392998
CTCGGCCAGCTGGTTGTTAT
60.393
55.000
32.81
0.00
37.57
1.89
939
1646
4.528206
TCGAGGATATATTGGTGCTCACAT
59.472
41.667
2.21
0.00
33.01
3.21
1022
1729
7.011482
CCATCCGAAGATAGTAAAAGTGAAAGG
59.989
40.741
0.00
0.00
0.00
3.11
1025
1732
7.601508
TCCGAAGATAGTAAAAGTGAAAGGAAC
59.398
37.037
0.00
0.00
0.00
3.62
1030
1737
5.941948
AGTAAAAGTGAAAGGAACGATGG
57.058
39.130
0.00
0.00
0.00
3.51
1053
1760
4.643387
GCACCACCACCGGCTCTT
62.643
66.667
0.00
0.00
0.00
2.85
1054
1761
2.358737
CACCACCACCGGCTCTTC
60.359
66.667
0.00
0.00
0.00
2.87
1055
1762
2.526873
ACCACCACCGGCTCTTCT
60.527
61.111
0.00
0.00
0.00
2.85
1056
1763
2.046892
CCACCACCGGCTCTTCTG
60.047
66.667
0.00
0.00
0.00
3.02
1119
1826
0.106335
AGCCATGCCATCTCTTCTCG
59.894
55.000
0.00
0.00
0.00
4.04
1157
1864
1.971505
TTGATGTAGAGGCCTGGGCG
61.972
60.000
12.00
0.00
43.06
6.13
1222
1941
3.000041
TCGACACTGGCACAACAATATC
59.000
45.455
0.00
0.00
38.70
1.63
1474
2330
5.238650
TGCGTCTTTCTACTCGATCATGATA
59.761
40.000
8.54
0.00
0.00
2.15
1499
2384
3.523157
TCCTATTTTCTGATGGCAGGTCA
59.477
43.478
0.00
0.00
42.53
4.02
1550
2435
3.139029
CCTTCAGGGTTAGCGTCAC
57.861
57.895
0.00
0.00
0.00
3.67
1789
2674
2.430367
GAGGTTGCCTCCCGTGTT
59.570
61.111
3.89
0.00
44.36
3.32
1823
2708
1.748403
GATGAGTCCTATGGCGGCA
59.252
57.895
16.34
16.34
0.00
5.69
1844
2729
2.230660
GTGGAAAACACTTCTCCCTGG
58.769
52.381
0.00
0.00
46.72
4.45
1845
2730
1.144913
TGGAAAACACTTCTCCCTGGG
59.855
52.381
6.33
6.33
0.00
4.45
1846
2731
1.248486
GAAAACACTTCTCCCTGGGC
58.752
55.000
8.22
0.00
0.00
5.36
1847
2732
0.555769
AAAACACTTCTCCCTGGGCA
59.444
50.000
8.22
0.00
0.00
5.36
1848
2733
0.555769
AAACACTTCTCCCTGGGCAA
59.444
50.000
8.22
2.12
0.00
4.52
1849
2734
0.779997
AACACTTCTCCCTGGGCAAT
59.220
50.000
8.22
0.00
0.00
3.56
1850
2735
0.779997
ACACTTCTCCCTGGGCAATT
59.220
50.000
8.22
0.00
0.00
2.32
1851
2736
1.180029
CACTTCTCCCTGGGCAATTG
58.820
55.000
8.22
0.00
0.00
2.32
1852
2737
0.040204
ACTTCTCCCTGGGCAATTGG
59.960
55.000
8.22
0.00
0.00
3.16
1853
2738
1.305213
TTCTCCCTGGGCAATTGGC
60.305
57.895
23.06
23.06
43.74
4.52
1854
2739
3.142838
CTCCCTGGGCAATTGGCG
61.143
66.667
23.97
12.25
46.16
5.69
1855
2740
4.757355
TCCCTGGGCAATTGGCGG
62.757
66.667
23.97
19.74
46.16
6.13
1858
2743
4.137872
CTGGGCAATTGGCGGCAG
62.138
66.667
23.97
21.18
46.16
4.85
1859
2744
4.992740
TGGGCAATTGGCGGCAGT
62.993
61.111
23.97
6.43
46.16
4.40
1860
2745
4.440127
GGGCAATTGGCGGCAGTG
62.440
66.667
23.97
15.54
46.16
3.66
1861
2746
4.440127
GGCAATTGGCGGCAGTGG
62.440
66.667
16.95
14.47
46.16
4.00
1862
2747
3.372730
GCAATTGGCGGCAGTGGA
61.373
61.111
21.18
5.29
0.00
4.02
1863
2748
2.929903
GCAATTGGCGGCAGTGGAA
61.930
57.895
21.18
4.93
0.00
3.53
1864
2749
1.664873
CAATTGGCGGCAGTGGAAA
59.335
52.632
12.87
0.00
0.00
3.13
1865
2750
0.033228
CAATTGGCGGCAGTGGAAAA
59.967
50.000
12.87
0.00
0.00
2.29
1866
2751
0.033366
AATTGGCGGCAGTGGAAAAC
59.967
50.000
12.87
0.00
0.00
2.43
1867
2752
1.112315
ATTGGCGGCAGTGGAAAACA
61.112
50.000
12.87
0.00
0.00
2.83
1937
2822
2.665519
CGTGGATGAAAACCTCGCAAAG
60.666
50.000
0.00
0.00
38.83
2.77
1980
2865
0.948623
CCGACTTGTGAATGTGGCGA
60.949
55.000
0.00
0.00
0.00
5.54
1983
2868
0.249699
ACTTGTGAATGTGGCGACGA
60.250
50.000
0.00
0.00
0.00
4.20
2005
2890
1.278985
CTGGAGGCACTATGTGAACCA
59.721
52.381
1.52
6.39
41.55
3.67
2027
2912
4.065088
ACATGCTAGAACTTCTTGCGAAA
58.935
39.130
17.01
4.14
45.84
3.46
2034
2919
1.375551
ACTTCTTGCGAAACCGTTGT
58.624
45.000
0.00
0.00
0.00
3.32
2035
2920
1.063469
ACTTCTTGCGAAACCGTTGTG
59.937
47.619
0.00
0.00
0.00
3.33
2036
2921
1.063469
CTTCTTGCGAAACCGTTGTGT
59.937
47.619
0.00
0.00
0.00
3.72
2047
2932
2.846193
ACCGTTGTGTATGCACTCTTT
58.154
42.857
15.25
0.00
45.44
2.52
2077
2962
1.663445
GGATGTTCGATCGGAGCGTAG
60.663
57.143
16.41
0.00
0.00
3.51
2136
3021
3.053245
TGAACTAGAGAGGAGGAGGAAGG
60.053
52.174
0.00
0.00
0.00
3.46
2147
3032
3.339141
GAGGAGGAAGGTGACATTCAAC
58.661
50.000
12.26
4.92
33.32
3.18
2212
3097
0.884514
CACTGCTTCGAGACTCTCCA
59.115
55.000
0.03
0.00
0.00
3.86
2226
3111
0.548031
TCTCCACAATGATCTGCCCC
59.452
55.000
0.00
0.00
0.00
5.80
2229
3114
2.374504
CTCCACAATGATCTGCCCCTAT
59.625
50.000
0.00
0.00
0.00
2.57
2441
3326
4.255833
TCCAAGCGATTCAAGCAAAATT
57.744
36.364
0.00
0.00
37.01
1.82
2498
3383
1.093159
GCACTGCTGCTAGCTCATTT
58.907
50.000
17.23
1.73
42.97
2.32
2669
3557
5.523552
GCTTGTCAAAAGCAAGGTAATGTTT
59.476
36.000
0.00
0.00
42.44
2.83
2671
3559
7.413988
GCTTGTCAAAAGCAAGGTAATGTTTTT
60.414
33.333
0.00
0.00
42.17
1.94
2691
3579
6.635030
TTTTCTTTTTCTTCTAGCCTGTCC
57.365
37.500
0.00
0.00
0.00
4.02
2850
3740
1.299648
GCAGTACAGGATGCACCCA
59.700
57.895
0.00
0.00
42.53
4.51
3098
3988
1.967066
AGGTATGCTGCAGCTACCTAG
59.033
52.381
39.69
12.91
44.99
3.02
3104
3994
4.963318
TGCTGCAGCTACCTAGATATTT
57.037
40.909
36.61
0.00
42.66
1.40
3174
4066
5.305585
TCATCAGTTGACTAGTTTGGGTTC
58.694
41.667
0.00
0.00
0.00
3.62
3197
4099
6.846013
CGTGTGTACGGAGTCAGTTGACAT
62.846
50.000
14.17
0.28
45.38
3.06
3249
4151
0.035439
CATACAAGGCCCAAGTCCGT
60.035
55.000
0.00
0.00
0.00
4.69
3348
4250
2.670148
GGGTGCCGAGGAGGATGTT
61.670
63.158
0.00
0.00
45.00
2.71
3426
4328
1.376683
GAGGCGTACCAATGTGGCA
60.377
57.895
0.00
0.00
42.67
4.92
3535
4442
3.751479
TCTTGCTACTTCAGTTCTGCA
57.249
42.857
0.00
0.00
0.00
4.41
3559
4466
5.163513
CACTTCTGTTGCTGTGTTCTTTTT
58.836
37.500
0.00
0.00
0.00
1.94
3584
4491
2.494870
GCATTGCTTCTGGATTCTTGGT
59.505
45.455
0.16
0.00
0.00
3.67
3587
4494
3.726557
TGCTTCTGGATTCTTGGTGAT
57.273
42.857
0.00
0.00
0.00
3.06
3690
4598
1.407979
ACGACGACAAAGACCTCTGTT
59.592
47.619
0.00
0.00
0.00
3.16
3775
4683
4.522789
TCGTCTTGGTATATGCAGCTCATA
59.477
41.667
7.89
7.89
41.52
2.15
3815
4723
1.927487
AATCAATCCTTGGCACTGCA
58.073
45.000
2.82
0.00
0.00
4.41
3919
4834
5.320549
TCCAAGACGGACTAACTATGAAC
57.679
43.478
0.00
0.00
39.64
3.18
3924
4839
7.148120
CCAAGACGGACTAACTATGAACTTCTA
60.148
40.741
0.00
0.00
36.56
2.10
3948
4863
1.152902
GCAGGCATAGGGATGTGCA
60.153
57.895
0.00
0.00
43.00
4.57
3957
4872
2.046892
GGATGTGCACTGACCGCT
60.047
61.111
19.41
0.00
0.00
5.52
3974
4889
1.938577
CGCTGATGCAGTTGCTAATCT
59.061
47.619
5.62
0.00
42.66
2.40
3981
4896
5.884232
TGATGCAGTTGCTAATCTCTTTGAT
59.116
36.000
5.62
0.00
42.66
2.57
4057
4972
3.750501
TCCAAAAAGGAGGATTACCCC
57.249
47.619
0.00
0.00
43.07
4.95
4058
4973
2.313643
TCCAAAAAGGAGGATTACCCCC
59.686
50.000
0.00
0.00
43.07
5.40
4065
4980
2.447959
GGATTACCCCCGGCCTCT
60.448
66.667
0.00
0.00
0.00
3.69
4082
4997
2.862536
CCTCTGCATCAAGTGATACACG
59.137
50.000
0.00
0.00
39.64
4.49
4083
4998
2.270923
TCTGCATCAAGTGATACACGC
58.729
47.619
0.00
0.00
39.64
5.34
4211
5136
1.891919
GGAGTTTGGAGTGTGCGCA
60.892
57.895
5.66
5.66
0.00
6.09
4228
5153
1.016627
GCAGCAGCGGTGATATTTCA
58.983
50.000
20.69
0.00
32.22
2.69
4245
5185
4.848685
ACGTGTGTGAGGTGGAAC
57.151
55.556
0.00
0.00
0.00
3.62
4260
5200
6.443849
TGAGGTGGAACAGAAAGGATATTACT
59.556
38.462
0.00
0.00
41.80
2.24
4368
5386
4.703575
CCAGAAATGAAATTGAGGAGCTGA
59.296
41.667
0.00
0.00
36.10
4.26
4467
5503
4.797275
GCCATTGTTCTTTTGAGGGAACTG
60.797
45.833
0.00
0.00
44.43
3.16
4478
5514
2.301870
TGAGGGAACTGCATTACTCGTT
59.698
45.455
0.00
0.00
44.43
3.85
4530
5576
1.482182
ACCGTGCATCTAGATGAAGCA
59.518
47.619
32.38
21.62
45.58
3.91
4557
5603
7.389232
AGTTAGAATGTCATTCACATGTCTGA
58.611
34.615
24.13
0.00
45.77
3.27
4559
5605
6.492007
AGAATGTCATTCACATGTCTGAAC
57.508
37.500
24.13
0.00
45.77
3.18
4562
5608
4.707105
TGTCATTCACATGTCTGAACAGT
58.293
39.130
0.00
0.00
39.20
3.55
4575
5629
3.323115
TCTGAACAGTCTCAGTTGCTCAT
59.677
43.478
10.65
0.00
42.93
2.90
4576
5630
4.063689
CTGAACAGTCTCAGTTGCTCATT
58.936
43.478
0.00
0.00
38.43
2.57
4612
5666
9.595823
TTCCTTACTATTCATTGTACTTGCTAC
57.404
33.333
0.00
0.00
0.00
3.58
4617
5671
7.394816
ACTATTCATTGTACTTGCTACTTGGT
58.605
34.615
0.00
0.00
0.00
3.67
4624
5678
8.765219
CATTGTACTTGCTACTTGGTACATATC
58.235
37.037
0.00
0.00
42.28
1.63
4628
5682
6.736123
ACTTGCTACTTGGTACATATCTACG
58.264
40.000
0.00
0.00
39.30
3.51
4633
5687
8.150296
TGCTACTTGGTACATATCTACGTACTA
58.850
37.037
0.00
0.00
39.30
1.82
4649
5703
9.392259
TCTACGTACTATAGATTCATGGTATGG
57.608
37.037
6.78
0.00
34.74
2.74
4675
5761
3.181466
TGACACTTGAAAGCTGCTAGTCA
60.181
43.478
0.90
7.24
0.00
3.41
4676
5762
3.999663
GACACTTGAAAGCTGCTAGTCAT
59.000
43.478
14.50
2.78
0.00
3.06
4677
5763
3.999663
ACACTTGAAAGCTGCTAGTCATC
59.000
43.478
14.50
5.04
0.00
2.92
4679
5765
2.698855
TGAAAGCTGCTAGTCATCCC
57.301
50.000
0.90
0.00
0.00
3.85
4680
5766
2.191400
TGAAAGCTGCTAGTCATCCCT
58.809
47.619
0.90
0.00
0.00
4.20
4684
5780
1.209019
AGCTGCTAGTCATCCCTTGTG
59.791
52.381
0.00
0.00
0.00
3.33
4686
5782
2.616510
GCTGCTAGTCATCCCTTGTGTT
60.617
50.000
0.00
0.00
0.00
3.32
4688
5784
3.411446
TGCTAGTCATCCCTTGTGTTTG
58.589
45.455
0.00
0.00
0.00
2.93
4706
5802
3.428746
TTGTATGCTTGTGTTGCGTTT
57.571
38.095
0.00
0.00
0.00
3.60
4711
5807
1.202132
TGCTTGTGTTGCGTTTCAGTC
60.202
47.619
0.00
0.00
0.00
3.51
4718
5814
5.720202
TGTGTTGCGTTTCAGTCTCTATAT
58.280
37.500
0.00
0.00
0.00
0.86
4719
5815
5.576774
TGTGTTGCGTTTCAGTCTCTATATG
59.423
40.000
0.00
0.00
0.00
1.78
4720
5816
5.005779
GTGTTGCGTTTCAGTCTCTATATGG
59.994
44.000
0.00
0.00
0.00
2.74
4721
5817
3.717707
TGCGTTTCAGTCTCTATATGGC
58.282
45.455
0.00
0.00
0.00
4.40
4735
5831
6.538742
TCTCTATATGGCTGTGTTGCTTTTAC
59.461
38.462
0.00
0.00
0.00
2.01
4741
5837
2.360801
GCTGTGTTGCTTTTACCAAGGA
59.639
45.455
0.00
0.00
0.00
3.36
4749
5845
2.758009
CTTTTACCAAGGAACGTCCGA
58.242
47.619
0.00
0.00
42.75
4.55
4768
5864
3.016736
CGACTTGGATGGCCTTATGTTT
58.983
45.455
3.32
0.00
34.31
2.83
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
38
39
3.996480
ACGAAGGAAGAGGAAAAGACTG
58.004
45.455
0.00
0.00
0.00
3.51
185
270
7.075148
TCCCATATGAGCCCTAAATTGATTTT
58.925
34.615
3.65
0.00
0.00
1.82
208
293
0.324645
ATTCACACAGCCCCCAATCC
60.325
55.000
0.00
0.00
0.00
3.01
229
314
2.254546
TCCGGCCACTGCATAATTAG
57.745
50.000
2.24
0.00
40.13
1.73
232
317
0.183492
ACATCCGGCCACTGCATAAT
59.817
50.000
2.24
0.00
40.13
1.28
241
326
0.326595
ACAATGTGTACATCCGGCCA
59.673
50.000
2.24
0.00
35.10
5.36
243
328
1.448985
ACACAATGTGTACATCCGGC
58.551
50.000
18.40
0.00
45.56
6.13
244
329
3.252215
ACAAACACAATGTGTACATCCGG
59.748
43.478
20.16
0.00
46.79
5.14
245
330
4.481930
ACAAACACAATGTGTACATCCG
57.518
40.909
20.16
7.23
46.79
4.18
285
370
9.287373
TCGATAAAGGGTGTGTTTTATTAACTT
57.713
29.630
0.00
0.00
31.50
2.66
326
422
4.930696
ACGGTGAATTTAGAAAATCCCCT
58.069
39.130
0.00
0.00
0.00
4.79
337
433
3.935828
TGATCGCATCAACGGTGAATTTA
59.064
39.130
7.51
0.00
37.30
1.40
367
463
0.030773
GCTAGATCGATGTCCGTGCA
59.969
55.000
0.54
0.00
39.75
4.57
416
686
7.653713
CAGAAATCCTATTAGTACGCTGACAAT
59.346
37.037
0.00
0.00
0.00
2.71
417
687
6.978659
CAGAAATCCTATTAGTACGCTGACAA
59.021
38.462
0.00
0.00
0.00
3.18
420
691
6.710597
ACAGAAATCCTATTAGTACGCTGA
57.289
37.500
0.00
0.00
0.00
4.26
455
726
6.073222
CCATACAAATAAGGGATACGAAGTGC
60.073
42.308
0.00
0.00
45.73
4.40
458
729
6.990349
ACACCATACAAATAAGGGATACGAAG
59.010
38.462
0.00
0.00
37.60
3.79
459
730
6.891388
ACACCATACAAATAAGGGATACGAA
58.109
36.000
0.00
0.00
37.60
3.85
462
733
8.747538
AAGAACACCATACAAATAAGGGATAC
57.252
34.615
0.00
0.00
0.00
2.24
463
734
9.403583
GAAAGAACACCATACAAATAAGGGATA
57.596
33.333
0.00
0.00
0.00
2.59
464
735
8.116026
AGAAAGAACACCATACAAATAAGGGAT
58.884
33.333
0.00
0.00
0.00
3.85
466
737
7.393234
TGAGAAAGAACACCATACAAATAAGGG
59.607
37.037
0.00
0.00
0.00
3.95
467
738
8.335532
TGAGAAAGAACACCATACAAATAAGG
57.664
34.615
0.00
0.00
0.00
2.69
471
742
7.233348
ACCAATGAGAAAGAACACCATACAAAT
59.767
33.333
0.00
0.00
0.00
2.32
472
743
6.549364
ACCAATGAGAAAGAACACCATACAAA
59.451
34.615
0.00
0.00
0.00
2.83
474
745
5.630121
ACCAATGAGAAAGAACACCATACA
58.370
37.500
0.00
0.00
0.00
2.29
475
746
6.016276
ACAACCAATGAGAAAGAACACCATAC
60.016
38.462
0.00
0.00
0.00
2.39
476
747
6.068010
ACAACCAATGAGAAAGAACACCATA
58.932
36.000
0.00
0.00
0.00
2.74
477
748
4.895297
ACAACCAATGAGAAAGAACACCAT
59.105
37.500
0.00
0.00
0.00
3.55
525
796
2.218603
CGGTCCAGCACAAGTTTACTT
58.781
47.619
0.00
0.00
36.45
2.24
526
797
1.140252
ACGGTCCAGCACAAGTTTACT
59.860
47.619
0.00
0.00
0.00
2.24
527
798
1.263217
CACGGTCCAGCACAAGTTTAC
59.737
52.381
0.00
0.00
0.00
2.01
573
848
0.231534
CATCGATCGATGCACACAGC
59.768
55.000
37.03
0.00
44.27
4.40
700
1400
7.724061
AGTGAAAGTTGTTGGTATCACCTTAAT
59.276
33.333
0.00
0.00
39.58
1.40
783
1483
1.521840
CGCAATGCAGAGAAGAGATCG
59.478
52.381
5.91
0.00
0.00
3.69
819
1519
2.351276
GATCACTTGGCCACCGGT
59.649
61.111
3.88
0.00
0.00
5.28
952
1659
1.896660
TCCAAGTCTTTGTGGCGGC
60.897
57.895
0.00
0.00
34.68
6.53
1022
1729
2.750888
GGTGCCTTCGCCATCGTTC
61.751
63.158
0.00
0.00
42.42
3.95
1052
1759
9.770097
GTATTGTCCATATCTTCAGAATCAGAA
57.230
33.333
0.00
0.00
0.00
3.02
1053
1760
9.152327
AGTATTGTCCATATCTTCAGAATCAGA
57.848
33.333
0.00
0.00
0.00
3.27
1054
1761
9.205719
CAGTATTGTCCATATCTTCAGAATCAG
57.794
37.037
0.00
0.00
0.00
2.90
1055
1762
8.708378
ACAGTATTGTCCATATCTTCAGAATCA
58.292
33.333
0.00
0.00
29.46
2.57
1056
1763
9.202273
GACAGTATTGTCCATATCTTCAGAATC
57.798
37.037
7.11
0.00
46.47
2.52
1164
1871
9.884465
TGCATTTTTCTTTTCTTTTTCGAAAAA
57.116
22.222
28.86
28.86
43.42
1.94
1202
1921
2.741517
TGATATTGTTGTGCCAGTGTCG
59.258
45.455
0.00
0.00
0.00
4.35
1222
1941
0.392998
ACCCGACAGCAGCCTTATTG
60.393
55.000
0.00
0.00
0.00
1.90
1253
2101
5.511729
CACTTCTTTTTGACCTTGTCGTTTC
59.488
40.000
0.00
0.00
34.95
2.78
1474
2330
4.018050
ACCTGCCATCAGAAAATAGGAACT
60.018
41.667
0.00
0.00
42.95
3.01
1499
2384
1.679680
CAATGAATTGCGATCCTGGCT
59.320
47.619
0.00
0.00
0.00
4.75
1550
2435
2.263741
GGCCATCCAGCGCCTTATG
61.264
63.158
2.29
5.03
42.21
1.90
1842
2727
4.992740
ACTGCCGCCAATTGCCCA
62.993
61.111
0.00
0.00
36.24
5.36
1843
2728
4.440127
CACTGCCGCCAATTGCCC
62.440
66.667
0.00
0.00
36.24
5.36
1844
2729
4.440127
CCACTGCCGCCAATTGCC
62.440
66.667
0.00
0.00
36.24
4.52
1845
2730
2.433231
TTTCCACTGCCGCCAATTGC
62.433
55.000
0.00
0.00
0.00
3.56
1846
2731
0.033228
TTTTCCACTGCCGCCAATTG
59.967
50.000
0.00
0.00
0.00
2.32
1847
2732
0.033366
GTTTTCCACTGCCGCCAATT
59.967
50.000
0.00
0.00
0.00
2.32
1848
2733
1.112315
TGTTTTCCACTGCCGCCAAT
61.112
50.000
0.00
0.00
0.00
3.16
1849
2734
1.754621
TGTTTTCCACTGCCGCCAA
60.755
52.632
0.00
0.00
0.00
4.52
1850
2735
2.124109
TGTTTTCCACTGCCGCCA
60.124
55.556
0.00
0.00
0.00
5.69
1851
2736
2.335011
GTGTTTTCCACTGCCGCC
59.665
61.111
0.00
0.00
41.11
6.13
1858
2743
2.230660
CCAGGGAGAAGTGTTTTCCAC
58.769
52.381
0.00
0.00
44.89
4.02
1859
2744
1.144913
CCCAGGGAGAAGTGTTTTCCA
59.855
52.381
0.00
0.00
32.50
3.53
1860
2745
1.911057
CCCAGGGAGAAGTGTTTTCC
58.089
55.000
0.00
0.00
0.00
3.13
1861
2746
1.248486
GCCCAGGGAGAAGTGTTTTC
58.752
55.000
10.89
0.00
0.00
2.29
1862
2747
0.555769
TGCCCAGGGAGAAGTGTTTT
59.444
50.000
10.89
0.00
0.00
2.43
1863
2748
0.555769
TTGCCCAGGGAGAAGTGTTT
59.444
50.000
10.89
0.00
0.00
2.83
1864
2749
0.779997
ATTGCCCAGGGAGAAGTGTT
59.220
50.000
10.89
0.00
0.00
3.32
1865
2750
0.038744
CATTGCCCAGGGAGAAGTGT
59.961
55.000
10.89
0.00
0.00
3.55
1866
2751
0.038744
ACATTGCCCAGGGAGAAGTG
59.961
55.000
10.89
3.37
0.00
3.16
1867
2752
0.329596
GACATTGCCCAGGGAGAAGT
59.670
55.000
10.89
1.04
0.00
3.01
1868
2753
0.745845
CGACATTGCCCAGGGAGAAG
60.746
60.000
10.89
0.00
0.00
2.85
1869
2754
1.299648
CGACATTGCCCAGGGAGAA
59.700
57.895
10.89
0.30
0.00
2.87
1870
2755
1.918293
ACGACATTGCCCAGGGAGA
60.918
57.895
10.89
0.00
0.00
3.71
1871
2756
1.746615
CACGACATTGCCCAGGGAG
60.747
63.158
10.89
0.00
0.00
4.30
1872
2757
2.063015
AACACGACATTGCCCAGGGA
62.063
55.000
10.89
0.00
0.00
4.20
1873
2758
1.603455
AACACGACATTGCCCAGGG
60.603
57.895
0.00
0.00
0.00
4.45
1874
2759
1.172180
ACAACACGACATTGCCCAGG
61.172
55.000
0.00
0.00
0.00
4.45
1875
2760
0.667993
AACAACACGACATTGCCCAG
59.332
50.000
0.00
0.00
0.00
4.45
1937
2822
1.212616
CACGCCGATCCAAGAAGATC
58.787
55.000
0.00
0.00
39.47
2.75
1980
2865
0.972983
ACATAGTGCCTCCAGCTCGT
60.973
55.000
0.00
0.00
44.23
4.18
1983
2868
1.065854
GTTCACATAGTGCCTCCAGCT
60.066
52.381
0.00
0.00
44.23
4.24
2034
2919
7.847096
TCCTTAAGATACAAAGAGTGCATACA
58.153
34.615
3.36
0.00
0.00
2.29
2035
2920
8.768955
CATCCTTAAGATACAAAGAGTGCATAC
58.231
37.037
3.36
0.00
32.37
2.39
2036
2921
8.486210
ACATCCTTAAGATACAAAGAGTGCATA
58.514
33.333
3.36
0.00
32.37
3.14
2047
2932
5.533528
TCCGATCGAACATCCTTAAGATACA
59.466
40.000
18.66
0.00
32.37
2.29
2077
2962
0.385390
CAGCCGCAAAATATCACCCC
59.615
55.000
0.00
0.00
0.00
4.95
2212
3097
1.349026
CGGATAGGGGCAGATCATTGT
59.651
52.381
0.00
0.00
0.00
2.71
2226
3111
6.153680
AGGTAATCAAATCTCCTAGCGGATAG
59.846
42.308
0.00
0.00
39.01
2.08
2229
3114
4.039245
CAGGTAATCAAATCTCCTAGCGGA
59.961
45.833
0.00
0.00
37.82
5.54
2318
3203
4.097286
CCGTTTTTGAAGAAGAGTTTCCCA
59.903
41.667
0.00
0.00
33.64
4.37
2441
3326
4.921515
GCATTGTTCAGTACGTAGTCTTCA
59.078
41.667
0.00
0.00
43.93
3.02
2451
3336
3.000041
TGATCGTGGCATTGTTCAGTAC
59.000
45.455
0.00
0.00
0.00
2.73
2669
3557
4.755123
CGGACAGGCTAGAAGAAAAAGAAA
59.245
41.667
0.00
0.00
0.00
2.52
2671
3559
3.323979
ACGGACAGGCTAGAAGAAAAAGA
59.676
43.478
0.00
0.00
0.00
2.52
2691
3579
1.239296
TACACCAGGACTGACCGACG
61.239
60.000
0.00
0.00
44.74
5.12
2850
3740
5.196695
GAGATGGGGAACTTGCTTATTTCT
58.803
41.667
0.00
0.00
0.00
2.52
3098
3988
8.768957
TGATGAATCTACAGCTGCTAAATATC
57.231
34.615
15.27
10.48
0.00
1.63
3104
3994
5.733676
TGTTTGATGAATCTACAGCTGCTA
58.266
37.500
15.27
4.75
0.00
3.49
3174
4066
3.166638
GTCAACTGACTCCGTACACACG
61.167
54.545
2.51
0.00
43.38
4.49
3197
4099
1.432514
CACGCTGAGCTTGCTTCTTA
58.567
50.000
1.78
0.00
0.00
2.10
3231
4133
0.035439
CACGGACTTGGGCCTTGTAT
60.035
55.000
4.53
0.00
0.00
2.29
3249
4151
1.617536
AAGGCTCTCCTGGATGGCA
60.618
57.895
19.85
0.00
43.40
4.92
3348
4250
1.215382
CACGGCGGAGAAGATGACA
59.785
57.895
13.24
0.00
0.00
3.58
3426
4328
1.077357
TCACTTGGCCCGTGTTTGT
60.077
52.632
18.46
0.00
34.14
2.83
3535
4442
2.991250
AGAACACAGCAACAGAAGTGT
58.009
42.857
0.00
0.00
46.24
3.55
3559
4466
2.025605
AGAATCCAGAAGCAATGCCTGA
60.026
45.455
12.07
0.00
0.00
3.86
3584
4491
1.803922
CGACAACGTAGCCGCATCA
60.804
57.895
0.00
0.00
37.70
3.07
3587
4494
2.126618
CTCGACAACGTAGCCGCA
60.127
61.111
0.00
0.00
40.69
5.69
3690
4598
4.700365
CGCGACGCTCACCACAGA
62.700
66.667
19.02
0.00
0.00
3.41
3714
4622
2.872038
GCAGACGGTTGACTTCATCCTT
60.872
50.000
5.08
0.00
34.39
3.36
3775
4683
7.735917
TGATTTACTCGATCATACCCAAGATT
58.264
34.615
0.00
0.00
0.00
2.40
3912
4827
3.871594
CCTGCCCGTTTAGAAGTTCATAG
59.128
47.826
5.50
0.00
0.00
2.23
3919
4834
2.213499
CTATGCCTGCCCGTTTAGAAG
58.787
52.381
0.00
0.00
0.00
2.85
3924
4839
1.645402
ATCCCTATGCCTGCCCGTTT
61.645
55.000
0.00
0.00
0.00
3.60
3957
4872
5.247862
TCAAAGAGATTAGCAACTGCATCA
58.752
37.500
4.22
0.00
45.16
3.07
4037
4952
3.750501
GGGGTAATCCTCCTTTTTGGA
57.249
47.619
0.00
0.00
43.86
3.53
4057
4972
2.110967
CACTTGATGCAGAGGCCGG
61.111
63.158
0.00
0.00
40.13
6.13
4058
4973
0.463295
ATCACTTGATGCAGAGGCCG
60.463
55.000
0.00
0.00
40.13
6.13
4065
4980
2.001872
CTGCGTGTATCACTTGATGCA
58.998
47.619
5.96
5.96
43.23
3.96
4082
4997
1.276421
TGGCTCTGTAAGTTCCTCTGC
59.724
52.381
0.00
0.00
33.76
4.26
4083
4998
3.055530
ACATGGCTCTGTAAGTTCCTCTG
60.056
47.826
0.00
0.00
33.76
3.35
4228
5153
0.179084
CTGTTCCACCTCACACACGT
60.179
55.000
0.00
0.00
0.00
4.49
4230
5170
2.325583
TTCTGTTCCACCTCACACAC
57.674
50.000
0.00
0.00
0.00
3.82
4260
5200
9.391006
CAAAACTAATCAGCTACCAGGTAATAA
57.609
33.333
0.00
0.00
0.00
1.40
4280
5220
5.701290
CCTCTTACGATCAAGAACCAAAACT
59.299
40.000
0.00
0.00
34.22
2.66
4345
5363
4.703575
TCAGCTCCTCAATTTCATTTCTGG
59.296
41.667
0.00
0.00
0.00
3.86
4412
5448
1.949525
CCCAAGGCTTTCATATCACCG
59.050
52.381
0.00
0.00
0.00
4.94
4467
5503
4.192317
AGAGGGAATTCAACGAGTAATGC
58.808
43.478
7.93
0.00
0.00
3.56
4493
5530
1.701704
GGTAACACTTGCATTGCAGC
58.298
50.000
11.76
0.00
40.61
5.25
4498
5535
1.313772
TGCACGGTAACACTTGCATT
58.686
45.000
0.00
0.00
40.01
3.56
4530
5576
9.322773
CAGACATGTGAATGACATTCTAACTAT
57.677
33.333
24.80
11.56
43.20
2.12
4533
5579
7.601073
TCAGACATGTGAATGACATTCTAAC
57.399
36.000
24.80
17.31
43.20
2.34
4536
5582
5.999600
TGTTCAGACATGTGAATGACATTCT
59.000
36.000
24.80
7.96
43.20
2.40
4557
5603
2.551459
GCAATGAGCAACTGAGACTGTT
59.449
45.455
0.00
0.00
44.79
3.16
4559
5605
2.896243
GCAATGAGCAACTGAGACTG
57.104
50.000
0.00
0.00
44.79
3.51
4601
5655
7.655521
AGATATGTACCAAGTAGCAAGTACA
57.344
36.000
4.51
4.51
46.45
2.90
4624
5678
9.392259
TCCATACCATGAATCTATAGTACGTAG
57.608
37.037
0.00
2.89
0.00
3.51
4633
5687
8.443176
AGTGTCAATTCCATACCATGAATCTAT
58.557
33.333
0.00
0.00
0.00
1.98
4636
5690
6.949352
AGTGTCAATTCCATACCATGAATC
57.051
37.500
0.00
0.00
0.00
2.52
4645
5699
5.335897
GCAGCTTTCAAGTGTCAATTCCATA
60.336
40.000
0.00
0.00
0.00
2.74
4649
5703
4.234530
AGCAGCTTTCAAGTGTCAATTC
57.765
40.909
0.00
0.00
0.00
2.17
4675
5761
4.022068
CACAAGCATACAAACACAAGGGAT
60.022
41.667
0.00
0.00
0.00
3.85
4676
5762
3.317711
CACAAGCATACAAACACAAGGGA
59.682
43.478
0.00
0.00
0.00
4.20
4677
5763
3.068024
ACACAAGCATACAAACACAAGGG
59.932
43.478
0.00
0.00
0.00
3.95
4679
5765
4.026640
GCAACACAAGCATACAAACACAAG
60.027
41.667
0.00
0.00
0.00
3.16
4680
5766
3.862267
GCAACACAAGCATACAAACACAA
59.138
39.130
0.00
0.00
0.00
3.33
4684
5780
2.726633
ACGCAACACAAGCATACAAAC
58.273
42.857
0.00
0.00
0.00
2.93
4686
5782
3.181496
TGAAACGCAACACAAGCATACAA
60.181
39.130
0.00
0.00
0.00
2.41
4688
5784
2.973224
CTGAAACGCAACACAAGCATAC
59.027
45.455
0.00
0.00
0.00
2.39
4706
5802
4.442052
GCAACACAGCCATATAGAGACTGA
60.442
45.833
0.00
0.00
32.67
3.41
4711
5807
5.824904
AAAAGCAACACAGCCATATAGAG
57.175
39.130
0.00
0.00
34.23
2.43
4718
5814
1.769026
TGGTAAAAGCAACACAGCCA
58.231
45.000
0.00
0.00
34.23
4.75
4719
5815
2.545742
CCTTGGTAAAAGCAACACAGCC
60.546
50.000
0.00
0.00
31.65
4.85
4720
5816
2.360801
TCCTTGGTAAAAGCAACACAGC
59.639
45.455
0.00
0.00
31.65
4.40
4721
5817
4.359706
GTTCCTTGGTAAAAGCAACACAG
58.640
43.478
0.00
0.00
31.65
3.66
4735
5831
0.949105
CCAAGTCGGACGTTCCTTGG
60.949
60.000
15.06
15.06
45.61
3.61
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.