Multiple sequence alignment - TraesCS5A01G441400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G441400 chr5A 100.000 3855 0 0 1 3855 622235437 622231583 0.000000e+00 7119.0
1 TraesCS5A01G441400 chr5A 86.119 1729 192 30 1143 2855 622394172 622392476 0.000000e+00 1820.0
2 TraesCS5A01G441400 chr5A 86.223 1713 194 29 1164 2855 622460599 622458908 0.000000e+00 1818.0
3 TraesCS5A01G441400 chr5A 83.962 106 11 4 822 924 622460938 622460836 3.170000e-16 97.1
4 TraesCS5A01G441400 chr5B 92.907 2270 113 19 632 2874 617293663 617291415 0.000000e+00 3256.0
5 TraesCS5A01G441400 chr5B 85.507 1725 205 26 1147 2856 617436501 617434807 0.000000e+00 1759.0
6 TraesCS5A01G441400 chr5B 83.647 1914 231 55 970 2855 617602040 617600181 0.000000e+00 1725.0
7 TraesCS5A01G441400 chr5B 90.691 333 18 9 2866 3187 617291397 617291067 7.650000e-117 431.0
8 TraesCS5A01G441400 chr5B 85.333 300 21 9 158 437 617294032 617293736 4.870000e-74 289.0
9 TraesCS5A01G441400 chr5B 88.387 155 12 4 3547 3695 617288351 617288197 8.510000e-42 182.0
10 TraesCS5A01G441400 chr5D 94.878 1191 54 6 1686 2871 498085554 498084366 0.000000e+00 1855.0
11 TraesCS5A01G441400 chr5D 85.532 1728 207 24 1141 2856 498173561 498171865 0.000000e+00 1766.0
12 TraesCS5A01G441400 chr5D 83.879 1923 237 41 970 2855 498291284 498289398 0.000000e+00 1766.0
13 TraesCS5A01G441400 chr5D 91.429 525 39 1 1141 1665 498086137 498085619 0.000000e+00 715.0
14 TraesCS5A01G441400 chr5D 85.615 431 40 12 3273 3694 498083827 498083410 2.130000e-117 433.0
15 TraesCS5A01G441400 chr5D 91.003 289 14 6 158 437 498086973 498086688 2.810000e-101 379.0
16 TraesCS5A01G441400 chr5D 88.818 313 15 8 632 924 498086665 498086353 2.190000e-97 366.0
17 TraesCS5A01G441400 chr5D 95.480 177 8 0 458 634 539774881 539775057 2.270000e-72 283.0
18 TraesCS5A01G441400 chr5D 86.992 246 16 12 2866 3103 498084345 498084108 2.950000e-66 263.0
19 TraesCS5A01G441400 chr5D 87.179 78 10 0 3196 3273 542620522 542620445 5.300000e-14 89.8
20 TraesCS5A01G441400 chr1B 82.006 1256 147 36 1142 2356 569519386 569520603 0.000000e+00 994.0
21 TraesCS5A01G441400 chr1B 88.506 87 10 0 3187 3273 308615876 308615790 5.270000e-19 106.0
22 TraesCS5A01G441400 chr3A 80.989 1052 175 19 1804 2847 20557818 20556784 0.000000e+00 811.0
23 TraesCS5A01G441400 chr3B 76.402 1034 214 28 1770 2786 23020826 23021846 7.330000e-147 531.0
24 TraesCS5A01G441400 chr3B 94.444 180 7 3 457 634 723448436 723448614 1.360000e-69 274.0
25 TraesCS5A01G441400 chr2A 97.701 174 4 0 459 632 771487688 771487861 2.250000e-77 300.0
26 TraesCS5A01G441400 chr2A 97.701 174 4 0 459 632 771489412 771489585 2.250000e-77 300.0
27 TraesCS5A01G441400 chr6A 94.709 189 8 2 457 645 602969849 602970035 3.770000e-75 292.0
28 TraesCS5A01G441400 chr7B 92.821 195 10 4 449 641 741292084 741291892 2.930000e-71 279.0
29 TraesCS5A01G441400 chr7B 91.327 196 15 2 447 641 566151122 566151316 2.280000e-67 267.0
30 TraesCS5A01G441400 chr2B 93.158 190 9 4 450 637 184781944 184781757 3.790000e-70 276.0
31 TraesCS5A01G441400 chr2B 89.333 75 6 2 3200 3273 325640893 325640820 4.100000e-15 93.5
32 TraesCS5A01G441400 chr6B 93.122 189 10 3 449 636 213152562 213152376 1.360000e-69 274.0
33 TraesCS5A01G441400 chr1D 87.374 198 14 3 1141 1337 420843892 420844079 2.330000e-52 217.0
34 TraesCS5A01G441400 chr4A 90.588 85 8 0 3338 3422 303863894 303863810 3.150000e-21 113.0
35 TraesCS5A01G441400 chrUn 88.095 84 10 0 3184 3267 314914260 314914343 2.450000e-17 100.0
36 TraesCS5A01G441400 chrUn 87.356 87 11 0 3187 3273 350107207 350107121 2.450000e-17 100.0
37 TraesCS5A01G441400 chr7A 87.356 87 11 0 3187 3273 215938195 215938109 2.450000e-17 100.0
38 TraesCS5A01G441400 chr1A 87.059 85 11 0 3183 3267 589856499 589856583 3.170000e-16 97.1
39 TraesCS5A01G441400 chr4B 81.481 81 13 2 3194 3273 117065468 117065547 8.940000e-07 65.8
40 TraesCS5A01G441400 chr4B 81.250 80 13 2 3194 3273 71706649 71706572 3.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G441400 chr5A 622231583 622235437 3854 True 7119.00 7119 100.000000 1 3855 1 chr5A.!!$R1 3854
1 TraesCS5A01G441400 chr5A 622392476 622394172 1696 True 1820.00 1820 86.119000 1143 2855 1 chr5A.!!$R2 1712
2 TraesCS5A01G441400 chr5A 622458908 622460938 2030 True 957.55 1818 85.092500 822 2855 2 chr5A.!!$R3 2033
3 TraesCS5A01G441400 chr5B 617434807 617436501 1694 True 1759.00 1759 85.507000 1147 2856 1 chr5B.!!$R1 1709
4 TraesCS5A01G441400 chr5B 617600181 617602040 1859 True 1725.00 1725 83.647000 970 2855 1 chr5B.!!$R2 1885
5 TraesCS5A01G441400 chr5B 617288197 617294032 5835 True 1039.50 3256 89.329500 158 3695 4 chr5B.!!$R3 3537
6 TraesCS5A01G441400 chr5D 498171865 498173561 1696 True 1766.00 1766 85.532000 1141 2856 1 chr5D.!!$R1 1715
7 TraesCS5A01G441400 chr5D 498289398 498291284 1886 True 1766.00 1766 83.879000 970 2855 1 chr5D.!!$R2 1885
8 TraesCS5A01G441400 chr5D 498083410 498086973 3563 True 668.50 1855 89.789167 158 3694 6 chr5D.!!$R4 3536
9 TraesCS5A01G441400 chr1B 569519386 569520603 1217 False 994.00 994 82.006000 1142 2356 1 chr1B.!!$F1 1214
10 TraesCS5A01G441400 chr3A 20556784 20557818 1034 True 811.00 811 80.989000 1804 2847 1 chr3A.!!$R1 1043
11 TraesCS5A01G441400 chr3B 23020826 23021846 1020 False 531.00 531 76.402000 1770 2786 1 chr3B.!!$F1 1016
12 TraesCS5A01G441400 chr2A 771487688 771489585 1897 False 300.00 300 97.701000 459 632 2 chr2A.!!$F1 173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.674269 CCCTAAACTTTACCGCGCCA 60.674 55.0 0.00 0.00 0.00 5.69 F
186 187 0.743345 GTGTTGGGGTATGGTCGAGC 60.743 60.0 7.89 7.89 0.00 5.03 F
1221 1407 0.750546 CCATGCTCCCCATCACTGTG 60.751 60.0 0.17 0.17 29.71 3.66 F
2728 4069 0.250553 ACGGCGATGGGAACTTCAAA 60.251 50.0 16.62 0.00 34.30 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1090 1247 0.036732 ACGTCCTGAATGTGCACCAT 59.963 50.000 15.69 2.18 34.36 3.55 R
1608 1812 0.108585 TGTCCCTGAGTTGCCTGAAC 59.891 55.000 0.00 0.00 34.40 3.18 R
2824 4168 0.612174 CCAAGTCCACGAGGAGAGGA 60.612 60.000 0.21 0.00 46.92 3.71 R
3624 7692 1.737793 CAACCTTATTCCTGGACGTGC 59.262 52.381 0.00 0.00 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.732896 TTCTCTTCTGTGGTCTTCTAAAGT 57.267 37.500 0.00 0.00 0.00 2.66
24 25 7.834881 TTCTCTTCTGTGGTCTTCTAAAGTA 57.165 36.000 0.00 0.00 0.00 2.24
25 26 7.834881 TCTCTTCTGTGGTCTTCTAAAGTAA 57.165 36.000 0.00 0.00 0.00 2.24
26 27 8.246430 TCTCTTCTGTGGTCTTCTAAAGTAAA 57.754 34.615 0.00 0.00 0.00 2.01
27 28 8.361139 TCTCTTCTGTGGTCTTCTAAAGTAAAG 58.639 37.037 0.00 0.00 0.00 1.85
28 29 8.019656 TCTTCTGTGGTCTTCTAAAGTAAAGT 57.980 34.615 0.00 0.00 0.00 2.66
29 30 7.926555 TCTTCTGTGGTCTTCTAAAGTAAAGTG 59.073 37.037 0.00 0.00 0.00 3.16
30 31 7.120923 TCTGTGGTCTTCTAAAGTAAAGTGT 57.879 36.000 0.00 0.00 0.00 3.55
31 32 7.562135 TCTGTGGTCTTCTAAAGTAAAGTGTT 58.438 34.615 0.00 0.00 0.00 3.32
32 33 7.494625 TCTGTGGTCTTCTAAAGTAAAGTGTTG 59.505 37.037 0.00 0.00 0.00 3.33
33 34 7.107542 TGTGGTCTTCTAAAGTAAAGTGTTGT 58.892 34.615 0.00 0.00 0.00 3.32
34 35 8.259411 TGTGGTCTTCTAAAGTAAAGTGTTGTA 58.741 33.333 0.00 0.00 0.00 2.41
35 36 9.269453 GTGGTCTTCTAAAGTAAAGTGTTGTAT 57.731 33.333 0.00 0.00 0.00 2.29
36 37 9.841295 TGGTCTTCTAAAGTAAAGTGTTGTATT 57.159 29.630 0.00 0.00 0.00 1.89
42 43 9.706691 TCTAAAGTAAAGTGTTGTATTCTGGAG 57.293 33.333 0.00 0.00 0.00 3.86
43 44 9.490379 CTAAAGTAAAGTGTTGTATTCTGGAGT 57.510 33.333 0.00 0.00 0.00 3.85
52 53 8.798402 AGTGTTGTATTCTGGAGTATATCTAGC 58.202 37.037 0.00 0.00 36.49 3.42
53 54 8.798402 GTGTTGTATTCTGGAGTATATCTAGCT 58.202 37.037 0.00 0.00 36.49 3.32
54 55 9.368416 TGTTGTATTCTGGAGTATATCTAGCTT 57.632 33.333 0.00 0.00 36.49 3.74
57 58 9.368416 TGTATTCTGGAGTATATCTAGCTTTGT 57.632 33.333 0.00 0.00 36.49 2.83
60 61 7.762588 TCTGGAGTATATCTAGCTTTGTACC 57.237 40.000 0.00 0.00 36.49 3.34
61 62 7.295340 TCTGGAGTATATCTAGCTTTGTACCA 58.705 38.462 0.00 0.00 36.49 3.25
62 63 7.783119 TCTGGAGTATATCTAGCTTTGTACCAA 59.217 37.037 0.00 0.00 36.49 3.67
63 64 7.723324 TGGAGTATATCTAGCTTTGTACCAAC 58.277 38.462 0.00 0.00 0.00 3.77
64 65 6.862090 GGAGTATATCTAGCTTTGTACCAACG 59.138 42.308 0.00 0.00 0.00 4.10
65 66 7.255381 GGAGTATATCTAGCTTTGTACCAACGA 60.255 40.741 0.00 0.00 0.00 3.85
66 67 7.424001 AGTATATCTAGCTTTGTACCAACGAC 58.576 38.462 0.00 0.00 0.00 4.34
67 68 4.530710 ATCTAGCTTTGTACCAACGACA 57.469 40.909 0.00 0.00 0.00 4.35
68 69 4.530710 TCTAGCTTTGTACCAACGACAT 57.469 40.909 0.00 0.00 0.00 3.06
69 70 4.242475 TCTAGCTTTGTACCAACGACATG 58.758 43.478 0.00 0.00 0.00 3.21
70 71 1.535462 AGCTTTGTACCAACGACATGC 59.465 47.619 0.00 0.00 0.00 4.06
71 72 1.265635 GCTTTGTACCAACGACATGCA 59.734 47.619 0.00 0.00 31.27 3.96
72 73 2.287308 GCTTTGTACCAACGACATGCAA 60.287 45.455 0.00 0.00 31.27 4.08
73 74 3.611530 GCTTTGTACCAACGACATGCAAT 60.612 43.478 0.00 0.00 31.27 3.56
74 75 4.378978 GCTTTGTACCAACGACATGCAATA 60.379 41.667 0.00 0.00 31.27 1.90
75 76 4.671880 TTGTACCAACGACATGCAATAC 57.328 40.909 0.00 0.00 0.00 1.89
76 77 3.932822 TGTACCAACGACATGCAATACT 58.067 40.909 0.00 0.00 0.00 2.12
77 78 5.074584 TGTACCAACGACATGCAATACTA 57.925 39.130 0.00 0.00 0.00 1.82
78 79 4.865925 TGTACCAACGACATGCAATACTAC 59.134 41.667 0.00 0.00 0.00 2.73
79 80 3.267483 ACCAACGACATGCAATACTACC 58.733 45.455 0.00 0.00 0.00 3.18
80 81 2.612212 CCAACGACATGCAATACTACCC 59.388 50.000 0.00 0.00 0.00 3.69
81 82 3.531538 CAACGACATGCAATACTACCCT 58.468 45.455 0.00 0.00 0.00 4.34
82 83 4.442332 CCAACGACATGCAATACTACCCTA 60.442 45.833 0.00 0.00 0.00 3.53
83 84 5.113383 CAACGACATGCAATACTACCCTAA 58.887 41.667 0.00 0.00 0.00 2.69
84 85 5.347620 ACGACATGCAATACTACCCTAAA 57.652 39.130 0.00 0.00 0.00 1.85
85 86 5.114081 ACGACATGCAATACTACCCTAAAC 58.886 41.667 0.00 0.00 0.00 2.01
86 87 4.510340 CGACATGCAATACTACCCTAAACC 59.490 45.833 0.00 0.00 0.00 3.27
87 88 4.788679 ACATGCAATACTACCCTAAACCC 58.211 43.478 0.00 0.00 0.00 4.11
88 89 4.477213 ACATGCAATACTACCCTAAACCCT 59.523 41.667 0.00 0.00 0.00 4.34
89 90 5.668535 ACATGCAATACTACCCTAAACCCTA 59.331 40.000 0.00 0.00 0.00 3.53
90 91 6.159046 ACATGCAATACTACCCTAAACCCTAA 59.841 38.462 0.00 0.00 0.00 2.69
91 92 6.639590 TGCAATACTACCCTAAACCCTAAA 57.360 37.500 0.00 0.00 0.00 1.85
92 93 6.417258 TGCAATACTACCCTAAACCCTAAAC 58.583 40.000 0.00 0.00 0.00 2.01
93 94 6.216046 TGCAATACTACCCTAAACCCTAAACT 59.784 38.462 0.00 0.00 0.00 2.66
94 95 7.114754 GCAATACTACCCTAAACCCTAAACTT 58.885 38.462 0.00 0.00 0.00 2.66
95 96 7.613022 GCAATACTACCCTAAACCCTAAACTTT 59.387 37.037 0.00 0.00 0.00 2.66
98 99 7.020827 ACTACCCTAAACCCTAAACTTTACC 57.979 40.000 0.00 0.00 0.00 2.85
99 100 4.910195 ACCCTAAACCCTAAACTTTACCG 58.090 43.478 0.00 0.00 0.00 4.02
100 101 3.691118 CCCTAAACCCTAAACTTTACCGC 59.309 47.826 0.00 0.00 0.00 5.68
101 102 3.371898 CCTAAACCCTAAACTTTACCGCG 59.628 47.826 0.00 0.00 0.00 6.46
102 103 1.159285 AACCCTAAACTTTACCGCGC 58.841 50.000 0.00 0.00 0.00 6.86
103 104 0.674581 ACCCTAAACTTTACCGCGCC 60.675 55.000 0.00 0.00 0.00 6.53
104 105 0.674269 CCCTAAACTTTACCGCGCCA 60.674 55.000 0.00 0.00 0.00 5.69
105 106 1.158434 CCTAAACTTTACCGCGCCAA 58.842 50.000 0.00 0.00 0.00 4.52
106 107 1.135888 CCTAAACTTTACCGCGCCAAC 60.136 52.381 0.00 0.00 0.00 3.77
107 108 0.873721 TAAACTTTACCGCGCCAACC 59.126 50.000 0.00 0.00 0.00 3.77
108 109 0.820482 AAACTTTACCGCGCCAACCT 60.820 50.000 0.00 0.00 0.00 3.50
109 110 1.512156 AACTTTACCGCGCCAACCTG 61.512 55.000 0.00 0.00 0.00 4.00
110 111 2.670251 TTTACCGCGCCAACCTGG 60.670 61.111 0.00 0.00 41.55 4.45
111 112 3.479127 TTTACCGCGCCAACCTGGT 62.479 57.895 0.00 4.47 40.46 4.00
119 120 1.959848 GCCAACCTGGTGAGAAAGC 59.040 57.895 0.00 0.00 40.46 3.51
120 121 0.823356 GCCAACCTGGTGAGAAAGCA 60.823 55.000 0.00 0.00 40.46 3.91
124 125 3.571119 CTGGTGAGAAAGCAGCGG 58.429 61.111 0.00 0.00 46.71 5.52
125 126 2.032528 TGGTGAGAAAGCAGCGGG 59.967 61.111 0.00 0.00 39.04 6.13
126 127 3.435186 GGTGAGAAAGCAGCGGGC 61.435 66.667 0.00 0.00 45.30 6.13
127 128 3.435186 GTGAGAAAGCAGCGGGCC 61.435 66.667 0.00 0.00 46.50 5.80
132 133 4.722700 AAAGCAGCGGGCCGTCAT 62.723 61.111 28.82 11.38 46.50 3.06
133 134 3.323758 AAAGCAGCGGGCCGTCATA 62.324 57.895 28.82 0.00 46.50 2.15
134 135 3.740128 AAGCAGCGGGCCGTCATAG 62.740 63.158 28.82 13.69 46.50 2.23
135 136 4.221422 GCAGCGGGCCGTCATAGA 62.221 66.667 28.82 0.00 36.11 1.98
136 137 2.279517 CAGCGGGCCGTCATAGAC 60.280 66.667 28.82 8.71 0.00 2.59
137 138 2.442272 AGCGGGCCGTCATAGACT 60.442 61.111 28.82 11.18 0.00 3.24
138 139 2.027751 GCGGGCCGTCATAGACTC 59.972 66.667 28.82 2.84 0.00 3.36
139 140 2.782222 GCGGGCCGTCATAGACTCA 61.782 63.158 28.82 0.00 0.00 3.41
140 141 2.041976 CGGGCCGTCATAGACTCAT 58.958 57.895 19.97 0.00 0.00 2.90
141 142 1.244816 CGGGCCGTCATAGACTCATA 58.755 55.000 19.97 0.00 0.00 2.15
142 143 1.200252 CGGGCCGTCATAGACTCATAG 59.800 57.143 19.97 0.00 0.00 2.23
143 144 1.546476 GGGCCGTCATAGACTCATAGG 59.454 57.143 0.00 0.00 0.00 2.57
144 145 2.240279 GGCCGTCATAGACTCATAGGT 58.760 52.381 0.00 0.00 0.00 3.08
145 146 2.029828 GGCCGTCATAGACTCATAGGTG 60.030 54.545 0.00 0.00 0.00 4.00
146 147 2.623889 GCCGTCATAGACTCATAGGTGT 59.376 50.000 0.00 0.00 0.00 4.16
147 148 3.819337 GCCGTCATAGACTCATAGGTGTA 59.181 47.826 0.00 0.00 0.00 2.90
148 149 4.459685 GCCGTCATAGACTCATAGGTGTAT 59.540 45.833 0.00 0.00 0.00 2.29
149 150 5.620205 GCCGTCATAGACTCATAGGTGTATG 60.620 48.000 5.72 5.72 41.68 2.39
150 151 5.473846 CCGTCATAGACTCATAGGTGTATGT 59.526 44.000 10.15 0.00 41.33 2.29
151 152 6.348622 CCGTCATAGACTCATAGGTGTATGTC 60.349 46.154 10.15 5.71 41.33 3.06
152 153 6.204882 CGTCATAGACTCATAGGTGTATGTCA 59.795 42.308 10.15 0.00 41.33 3.58
153 154 7.364200 GTCATAGACTCATAGGTGTATGTCAC 58.636 42.308 10.15 0.00 41.33 3.67
169 170 1.134965 GTCACATCCTCTTCCTCGGTG 60.135 57.143 0.00 0.00 0.00 4.94
170 171 0.898320 CACATCCTCTTCCTCGGTGT 59.102 55.000 0.00 0.00 0.00 4.16
186 187 0.743345 GTGTTGGGGTATGGTCGAGC 60.743 60.000 7.89 7.89 0.00 5.03
189 190 4.944372 GGGGTATGGTCGAGCGCG 62.944 72.222 10.46 2.41 39.35 6.86
198 199 4.058732 TCGAGCGCGCAAACCCTA 62.059 61.111 35.10 8.07 37.46 3.53
199 200 3.115892 CGAGCGCGCAAACCCTAA 61.116 61.111 35.10 0.00 0.00 2.69
203 204 1.399089 GAGCGCGCAAACCCTAATAAA 59.601 47.619 35.10 0.00 0.00 1.40
206 207 2.596862 GCGCGCAAACCCTAATAAAAAG 59.403 45.455 29.10 0.00 0.00 2.27
211 213 6.399564 CGCGCAAACCCTAATAAAAAGAAAAG 60.400 38.462 8.75 0.00 0.00 2.27
219 221 8.700973 ACCCTAATAAAAAGAAAAGAACTTGCA 58.299 29.630 0.00 0.00 0.00 4.08
229 231 1.160137 AGAACTTGCATCTTCCGTGC 58.840 50.000 0.00 0.00 42.81 5.34
288 299 1.673993 CAAGCGTGCATGGTGGGTA 60.674 57.895 12.12 0.00 0.00 3.69
291 302 2.480610 GCGTGCATGGTGGGTATGG 61.481 63.158 8.27 0.00 0.00 2.74
320 331 1.223417 GCGGACGAAACGGAAGGAAA 61.223 55.000 0.00 0.00 0.00 3.13
404 419 4.019591 TGAGGCCTGGATTCATGATAGATG 60.020 45.833 12.00 0.00 0.00 2.90
458 540 4.070009 GGCTATCCCGGGTTAATTACAAG 58.930 47.826 22.86 5.61 0.00 3.16
459 541 4.070009 GCTATCCCGGGTTAATTACAAGG 58.930 47.826 22.86 3.14 0.00 3.61
460 542 3.588210 ATCCCGGGTTAATTACAAGGG 57.412 47.619 22.86 7.73 42.83 3.95
461 543 2.560080 TCCCGGGTTAATTACAAGGGA 58.440 47.619 22.86 11.19 45.76 4.20
462 544 2.506644 TCCCGGGTTAATTACAAGGGAG 59.493 50.000 22.86 0.00 44.21 4.30
463 545 2.240414 CCCGGGTTAATTACAAGGGAGT 59.760 50.000 14.18 0.00 43.64 3.85
464 546 3.275999 CCGGGTTAATTACAAGGGAGTG 58.724 50.000 0.00 0.00 0.00 3.51
510 592 8.270030 AGACATAATTTGGTCTCATTCATCTGA 58.730 33.333 6.01 0.00 40.18 3.27
593 675 5.527582 ACGGCTATAAAATGTGAATGAGACC 59.472 40.000 0.00 0.00 0.00 3.85
634 716 9.593134 CTAGATGAGTTCTAGCAAAACTGTAAT 57.407 33.333 0.32 0.00 45.63 1.89
635 717 8.854614 AGATGAGTTCTAGCAAAACTGTAATT 57.145 30.769 0.32 0.00 37.10 1.40
636 718 9.944376 AGATGAGTTCTAGCAAAACTGTAATTA 57.056 29.630 0.32 0.00 37.10 1.40
639 721 9.332502 TGAGTTCTAGCAAAACTGTAATTACAA 57.667 29.630 18.55 4.05 37.10 2.41
693 775 3.431912 TGCATTACAACACTCTACGCTTG 59.568 43.478 0.00 0.00 0.00 4.01
729 811 1.290203 ACATTATCGTCGCAGCCAAG 58.710 50.000 0.00 0.00 0.00 3.61
796 883 9.715121 TTTTCTTCACGGTTACTCTTTGTATAT 57.285 29.630 0.00 0.00 0.00 0.86
960 1067 4.240096 CAAATTTTCTGCACACTGATCCC 58.760 43.478 0.00 0.00 0.00 3.85
974 1081 3.077359 CTGATCCCCTTGACAAGTCAAC 58.923 50.000 14.03 2.42 43.90 3.18
1009 1116 3.309675 CGCGTAAGATGGGAAGCG 58.690 61.111 0.00 0.00 41.56 4.68
1084 1241 1.586578 GCTCATTCGTTTGCATGCATG 59.413 47.619 23.37 22.70 0.00 4.06
1134 1320 1.132453 CTGATCCACAGCAGCACAATG 59.868 52.381 0.00 0.00 39.86 2.82
1217 1403 2.520260 GGCCATGCTCCCCATCAC 60.520 66.667 0.00 0.00 29.71 3.06
1218 1404 2.599597 GCCATGCTCCCCATCACT 59.400 61.111 0.00 0.00 29.71 3.41
1219 1405 1.826921 GCCATGCTCCCCATCACTG 60.827 63.158 0.00 0.00 29.71 3.66
1220 1406 1.611419 CCATGCTCCCCATCACTGT 59.389 57.895 0.00 0.00 29.71 3.55
1221 1407 0.750546 CCATGCTCCCCATCACTGTG 60.751 60.000 0.17 0.17 29.71 3.66
1422 1620 0.938168 GTGTGGACGAGGACGACAAC 60.938 60.000 0.00 0.00 42.66 3.32
1494 1695 4.592192 ACGGAGATCATGGGCGCG 62.592 66.667 0.00 0.00 0.00 6.86
1542 1746 2.049248 GCGGTTTACGTCCACGGA 60.049 61.111 3.81 0.00 46.52 4.69
1547 1751 1.909781 TTTACGTCCACGGAGCCCT 60.910 57.895 3.81 0.00 44.95 5.19
1590 1794 3.260632 TCATGGATCTTCGTGTCTTCCAA 59.739 43.478 0.00 0.00 39.74 3.53
1641 1845 2.632996 CAGGGACAAGACTGACAAGGTA 59.367 50.000 0.00 0.00 36.86 3.08
1649 1853 1.394917 GACTGACAAGGTAAGCATGCG 59.605 52.381 13.01 0.00 0.00 4.73
2134 3113 2.365635 AGCCTGGTGTCCCGCTAT 60.366 61.111 0.00 0.00 0.00 2.97
2308 3287 2.125512 GAGTGCGCCAACGATCCT 60.126 61.111 4.18 0.00 43.93 3.24
2676 3655 0.820871 ACGCTCCTGAATCTCCAGAC 59.179 55.000 0.00 0.00 36.29 3.51
2728 4069 0.250553 ACGGCGATGGGAACTTCAAA 60.251 50.000 16.62 0.00 34.30 2.69
2824 4168 1.143073 GTGGAGAAAGGGGACAACACT 59.857 52.381 0.00 0.00 0.00 3.55
2895 4270 1.218875 TGCATGGACGACACGTGAAC 61.219 55.000 25.01 14.45 41.37 3.18
2912 4287 7.277098 ACACGTGAACGAATAAGCTGTATAATT 59.723 33.333 25.01 0.00 43.02 1.40
2982 4360 4.202441 AGGTATTGTGCTGCCTAAATCTG 58.798 43.478 0.00 0.00 28.33 2.90
3005 4383 3.461061 TGTCGATGGAGATGATTGAAGC 58.539 45.455 0.00 0.00 0.00 3.86
3009 4387 5.008415 GTCGATGGAGATGATTGAAGCAAAT 59.992 40.000 0.00 0.00 0.00 2.32
3010 4388 5.008316 TCGATGGAGATGATTGAAGCAAATG 59.992 40.000 0.00 0.00 0.00 2.32
3011 4389 5.008316 CGATGGAGATGATTGAAGCAAATGA 59.992 40.000 0.00 0.00 0.00 2.57
3027 4407 8.659925 AAGCAAATGACATATGTTGTTCAAAA 57.340 26.923 10.30 0.00 39.18 2.44
3119 4700 9.072375 TGAGATATAACACAAAACCACATTTCA 57.928 29.630 0.00 0.00 0.00 2.69
3155 4736 5.964958 ATTTCAACTGATACCCACAACTG 57.035 39.130 0.00 0.00 0.00 3.16
3162 4743 3.769844 CTGATACCCACAACTGTAGGACT 59.230 47.826 1.05 0.00 31.08 3.85
3170 4751 5.948162 CCCACAACTGTAGGACTAAGTAGTA 59.052 44.000 0.00 0.00 36.50 1.82
3188 4769 7.647907 AGTAGTAACGACAAAACACATAAGG 57.352 36.000 0.00 0.00 0.00 2.69
3189 4770 5.352643 AGTAACGACAAAACACATAAGGC 57.647 39.130 0.00 0.00 0.00 4.35
3190 4771 5.061179 AGTAACGACAAAACACATAAGGCT 58.939 37.500 0.00 0.00 0.00 4.58
3191 4772 3.896648 ACGACAAAACACATAAGGCTG 57.103 42.857 0.00 0.00 0.00 4.85
3192 4773 2.552315 ACGACAAAACACATAAGGCTGG 59.448 45.455 0.00 0.00 0.00 4.85
3193 4774 2.552315 CGACAAAACACATAAGGCTGGT 59.448 45.455 0.00 0.00 0.00 4.00
3194 4775 3.004315 CGACAAAACACATAAGGCTGGTT 59.996 43.478 0.00 0.00 0.00 3.67
3195 4776 4.546570 GACAAAACACATAAGGCTGGTTC 58.453 43.478 0.00 0.00 0.00 3.62
3196 4777 3.320826 ACAAAACACATAAGGCTGGTTCC 59.679 43.478 0.00 0.00 0.00 3.62
3197 4778 2.969821 AACACATAAGGCTGGTTCCA 57.030 45.000 0.00 0.00 0.00 3.53
3198 4779 3.456380 AACACATAAGGCTGGTTCCAT 57.544 42.857 0.00 0.00 0.00 3.41
3199 4780 3.456380 ACACATAAGGCTGGTTCCATT 57.544 42.857 0.00 0.00 0.00 3.16
3200 4781 3.091545 ACACATAAGGCTGGTTCCATTG 58.908 45.455 0.00 0.00 0.00 2.82
3201 4782 2.102578 ACATAAGGCTGGTTCCATTGC 58.897 47.619 0.00 0.00 0.00 3.56
3202 4783 2.101783 CATAAGGCTGGTTCCATTGCA 58.898 47.619 0.00 0.00 0.00 4.08
3203 4784 2.530460 TAAGGCTGGTTCCATTGCAT 57.470 45.000 0.00 0.00 0.00 3.96
3204 4785 0.899720 AAGGCTGGTTCCATTGCATG 59.100 50.000 0.00 0.00 0.00 4.06
3222 4803 2.627515 TGGGTGCTTAGATGAGATGC 57.372 50.000 0.00 0.00 0.00 3.91
3223 4804 2.121948 TGGGTGCTTAGATGAGATGCT 58.878 47.619 0.00 0.00 0.00 3.79
3224 4805 3.308401 TGGGTGCTTAGATGAGATGCTA 58.692 45.455 0.00 0.00 0.00 3.49
3225 4806 3.711190 TGGGTGCTTAGATGAGATGCTAA 59.289 43.478 0.00 0.00 0.00 3.09
3226 4807 4.202295 TGGGTGCTTAGATGAGATGCTAAG 60.202 45.833 0.00 0.00 43.95 2.18
3258 4839 8.635765 AAATAGCTTAACAATCAAACTCTCCA 57.364 30.769 0.00 0.00 0.00 3.86
3259 4840 8.635765 AATAGCTTAACAATCAAACTCTCCAA 57.364 30.769 0.00 0.00 0.00 3.53
3260 4841 8.814038 ATAGCTTAACAATCAAACTCTCCAAT 57.186 30.769 0.00 0.00 0.00 3.16
3261 4842 6.917533 AGCTTAACAATCAAACTCTCCAATG 58.082 36.000 0.00 0.00 0.00 2.82
3262 4843 5.574443 GCTTAACAATCAAACTCTCCAATGC 59.426 40.000 0.00 0.00 0.00 3.56
3263 4844 6.647334 TTAACAATCAAACTCTCCAATGCA 57.353 33.333 0.00 0.00 0.00 3.96
3264 4845 5.733620 AACAATCAAACTCTCCAATGCAT 57.266 34.783 0.00 0.00 0.00 3.96
3265 4846 6.839124 AACAATCAAACTCTCCAATGCATA 57.161 33.333 0.00 0.00 0.00 3.14
3266 4847 6.446781 ACAATCAAACTCTCCAATGCATAG 57.553 37.500 0.00 0.00 0.00 2.23
3267 4848 5.359009 ACAATCAAACTCTCCAATGCATAGG 59.641 40.000 0.00 0.00 0.00 2.57
3268 4849 4.574674 TCAAACTCTCCAATGCATAGGT 57.425 40.909 0.00 0.00 0.00 3.08
3269 4850 4.922206 TCAAACTCTCCAATGCATAGGTT 58.078 39.130 0.00 0.00 0.00 3.50
3270 4851 4.943705 TCAAACTCTCCAATGCATAGGTTC 59.056 41.667 0.00 0.00 0.00 3.62
3271 4852 4.851639 AACTCTCCAATGCATAGGTTCT 57.148 40.909 0.00 0.00 0.00 3.01
3275 4856 6.721318 ACTCTCCAATGCATAGGTTCTTTAA 58.279 36.000 0.00 0.00 0.00 1.52
3279 4860 8.713971 TCTCCAATGCATAGGTTCTTTAATCTA 58.286 33.333 0.00 0.00 32.86 1.98
3336 4917 3.521937 CCCATGTTTAAGTGACTAGGGGA 59.478 47.826 0.00 0.00 32.04 4.81
3346 4927 1.538135 ACTAGGGGAACGGCTTGGT 60.538 57.895 0.00 0.00 0.00 3.67
3357 4938 2.490991 ACGGCTTGGTTTGAGTACTTC 58.509 47.619 0.00 0.00 0.00 3.01
3391 4973 2.438795 GAGGACGAGGACGAGGCT 60.439 66.667 0.00 0.00 42.66 4.58
3410 4992 1.300233 GACCTCCGACGGATGCATC 60.300 63.158 18.71 18.81 0.00 3.91
3423 5005 1.703014 ATGCATCTGGGGCTCATCGT 61.703 55.000 0.00 0.00 0.00 3.73
3442 5024 3.929389 GAGGATCGCATGCGTCTC 58.071 61.111 36.50 31.90 40.74 3.36
3464 5046 1.003696 AGCTGTACAAGAAGGGGCTTC 59.996 52.381 0.00 0.00 40.45 3.86
3465 5047 1.271379 GCTGTACAAGAAGGGGCTTCA 60.271 52.381 0.00 0.00 42.37 3.02
3466 5048 2.427506 CTGTACAAGAAGGGGCTTCAC 58.572 52.381 0.00 0.00 42.37 3.18
3467 5049 1.270625 TGTACAAGAAGGGGCTTCACG 60.271 52.381 0.00 0.00 42.37 4.35
3468 5050 1.001633 GTACAAGAAGGGGCTTCACGA 59.998 52.381 0.00 0.00 42.37 4.35
3469 5051 0.250338 ACAAGAAGGGGCTTCACGAC 60.250 55.000 0.00 0.00 42.37 4.34
3472 5054 1.446272 GAAGGGGCTTCACGACGAG 60.446 63.158 0.00 0.00 39.95 4.18
3513 5095 4.806936 CAAGAGTGGAGCCTGCAA 57.193 55.556 0.00 0.00 0.00 4.08
3518 5105 1.284198 AGAGTGGAGCCTGCAATGATT 59.716 47.619 0.00 0.00 0.00 2.57
3539 5126 6.258727 TGATTGAGCTTTCATCGGAATAGTTC 59.741 38.462 0.00 0.00 31.93 3.01
3553 5140 7.802738 TCGGAATAGTTCAAATTTGTAGTGTG 58.197 34.615 17.47 0.00 0.00 3.82
3554 5141 6.523201 CGGAATAGTTCAAATTTGTAGTGTGC 59.477 38.462 17.47 8.21 0.00 4.57
3556 5143 7.865385 GGAATAGTTCAAATTTGTAGTGTGCAA 59.135 33.333 17.47 0.00 0.00 4.08
3558 5145 8.746922 ATAGTTCAAATTTGTAGTGTGCAATG 57.253 30.769 17.47 0.00 0.00 2.82
3560 5147 7.041107 AGTTCAAATTTGTAGTGTGCAATGTT 58.959 30.769 17.47 0.00 0.00 2.71
3561 5148 7.548780 AGTTCAAATTTGTAGTGTGCAATGTTT 59.451 29.630 17.47 0.00 0.00 2.83
3624 7692 1.270839 ACATGGTGACTGAAAGGACGG 60.271 52.381 0.00 0.00 39.30 4.79
3711 7779 8.810652 TTGTAAGATGATTAAAGCAAACAACC 57.189 30.769 0.00 0.00 0.00 3.77
3712 7780 8.177119 TGTAAGATGATTAAAGCAAACAACCT 57.823 30.769 0.00 0.00 0.00 3.50
3713 7781 9.290988 TGTAAGATGATTAAAGCAAACAACCTA 57.709 29.630 0.00 0.00 0.00 3.08
3716 7784 9.643693 AAGATGATTAAAGCAAACAACCTATTG 57.356 29.630 0.00 0.00 41.98 1.90
3717 7785 9.023962 AGATGATTAAAGCAAACAACCTATTGA 57.976 29.630 0.00 0.00 39.30 2.57
3718 7786 9.807649 GATGATTAAAGCAAACAACCTATTGAT 57.192 29.630 0.00 0.00 39.30 2.57
3719 7787 9.807649 ATGATTAAAGCAAACAACCTATTGATC 57.192 29.630 0.00 0.00 39.30 2.92
3720 7788 8.801299 TGATTAAAGCAAACAACCTATTGATCA 58.199 29.630 0.00 0.00 39.30 2.92
3721 7789 9.807649 GATTAAAGCAAACAACCTATTGATCAT 57.192 29.630 0.00 0.00 39.30 2.45
3757 7825 9.651913 ACAAAAGTTTTGTCAATTGAGTAATGT 57.348 25.926 24.92 5.09 0.00 2.71
3782 7850 9.561270 GTAATGAAACTAGGAAGAGAAAATTGC 57.439 33.333 0.00 0.00 0.00 3.56
3783 7851 6.575162 TGAAACTAGGAAGAGAAAATTGCC 57.425 37.500 0.00 0.00 0.00 4.52
3784 7852 6.306987 TGAAACTAGGAAGAGAAAATTGCCT 58.693 36.000 0.00 0.00 0.00 4.75
3785 7853 7.458397 TGAAACTAGGAAGAGAAAATTGCCTA 58.542 34.615 0.00 0.00 0.00 3.93
3786 7854 8.109634 TGAAACTAGGAAGAGAAAATTGCCTAT 58.890 33.333 0.00 0.00 0.00 2.57
3787 7855 7.872113 AACTAGGAAGAGAAAATTGCCTATG 57.128 36.000 0.00 0.00 0.00 2.23
3788 7856 6.963322 ACTAGGAAGAGAAAATTGCCTATGT 58.037 36.000 0.00 0.00 0.00 2.29
3789 7857 7.406104 ACTAGGAAGAGAAAATTGCCTATGTT 58.594 34.615 0.00 0.00 0.00 2.71
3790 7858 6.521151 AGGAAGAGAAAATTGCCTATGTTG 57.479 37.500 0.00 0.00 0.00 3.33
3791 7859 6.012745 AGGAAGAGAAAATTGCCTATGTTGT 58.987 36.000 0.00 0.00 0.00 3.32
3792 7860 6.494835 AGGAAGAGAAAATTGCCTATGTTGTT 59.505 34.615 0.00 0.00 0.00 2.83
3793 7861 6.808704 GGAAGAGAAAATTGCCTATGTTGTTC 59.191 38.462 0.00 0.00 0.00 3.18
3794 7862 6.899393 AGAGAAAATTGCCTATGTTGTTCA 57.101 33.333 0.00 0.00 0.00 3.18
3795 7863 7.288810 AGAGAAAATTGCCTATGTTGTTCAA 57.711 32.000 0.00 0.00 0.00 2.69
3796 7864 7.725251 AGAGAAAATTGCCTATGTTGTTCAAA 58.275 30.769 0.00 0.00 0.00 2.69
3797 7865 8.203485 AGAGAAAATTGCCTATGTTGTTCAAAA 58.797 29.630 0.00 0.00 0.00 2.44
3798 7866 8.369218 AGAAAATTGCCTATGTTGTTCAAAAG 57.631 30.769 0.00 0.00 0.00 2.27
3799 7867 8.203485 AGAAAATTGCCTATGTTGTTCAAAAGA 58.797 29.630 0.00 0.00 0.00 2.52
3800 7868 8.907222 AAAATTGCCTATGTTGTTCAAAAGAT 57.093 26.923 0.00 0.00 0.00 2.40
3801 7869 8.907222 AAATTGCCTATGTTGTTCAAAAGATT 57.093 26.923 0.00 0.00 0.00 2.40
3802 7870 8.907222 AATTGCCTATGTTGTTCAAAAGATTT 57.093 26.923 0.00 0.00 0.00 2.17
3803 7871 7.712264 TTGCCTATGTTGTTCAAAAGATTTG 57.288 32.000 0.00 0.00 0.00 2.32
3804 7872 6.815089 TGCCTATGTTGTTCAAAAGATTTGT 58.185 32.000 3.06 0.00 0.00 2.83
3805 7873 7.271511 TGCCTATGTTGTTCAAAAGATTTGTT 58.728 30.769 3.06 0.00 0.00 2.83
3806 7874 7.437862 TGCCTATGTTGTTCAAAAGATTTGTTC 59.562 33.333 3.06 0.00 0.00 3.18
3807 7875 7.653311 GCCTATGTTGTTCAAAAGATTTGTTCT 59.347 33.333 3.06 0.00 35.70 3.01
3808 7876 8.971321 CCTATGTTGTTCAAAAGATTTGTTCTG 58.029 33.333 3.06 0.00 33.93 3.02
3809 7877 9.734620 CTATGTTGTTCAAAAGATTTGTTCTGA 57.265 29.630 3.06 0.00 33.93 3.27
3811 7879 9.603921 ATGTTGTTCAAAAGATTTGTTCTGAAT 57.396 25.926 0.00 0.00 33.93 2.57
3812 7880 9.434420 TGTTGTTCAAAAGATTTGTTCTGAATT 57.566 25.926 0.00 0.00 33.93 2.17
3838 7906 6.964741 TTTTTGTCAACTGAGTAACGTACA 57.035 33.333 0.00 0.00 0.00 2.90
3839 7907 6.964741 TTTTGTCAACTGAGTAACGTACAA 57.035 33.333 0.00 0.00 0.00 2.41
3840 7908 6.964741 TTTGTCAACTGAGTAACGTACAAA 57.035 33.333 0.00 0.00 34.29 2.83
3841 7909 7.542534 TTTGTCAACTGAGTAACGTACAAAT 57.457 32.000 0.00 0.00 32.40 2.32
3842 7910 8.645730 TTTGTCAACTGAGTAACGTACAAATA 57.354 30.769 0.00 0.00 32.40 1.40
3843 7911 8.821147 TTGTCAACTGAGTAACGTACAAATAT 57.179 30.769 0.00 0.00 0.00 1.28
3844 7912 8.821147 TGTCAACTGAGTAACGTACAAATATT 57.179 30.769 0.00 0.00 0.00 1.28
3845 7913 9.911138 TGTCAACTGAGTAACGTACAAATATTA 57.089 29.630 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.732896 ACTTTAGAAGACCACAGAAGAGAA 57.267 37.500 0.00 0.00 0.00 2.87
3 4 7.926555 CACTTTACTTTAGAAGACCACAGAAGA 59.073 37.037 0.00 0.00 0.00 2.87
4 5 7.711339 ACACTTTACTTTAGAAGACCACAGAAG 59.289 37.037 0.00 0.00 0.00 2.85
6 7 7.120923 ACACTTTACTTTAGAAGACCACAGA 57.879 36.000 0.00 0.00 0.00 3.41
7 8 7.280205 ACAACACTTTACTTTAGAAGACCACAG 59.720 37.037 0.00 0.00 0.00 3.66
8 9 7.107542 ACAACACTTTACTTTAGAAGACCACA 58.892 34.615 0.00 0.00 0.00 4.17
9 10 7.549615 ACAACACTTTACTTTAGAAGACCAC 57.450 36.000 0.00 0.00 0.00 4.16
10 11 9.841295 AATACAACACTTTACTTTAGAAGACCA 57.159 29.630 0.00 0.00 0.00 4.02
16 17 9.706691 CTCCAGAATACAACACTTTACTTTAGA 57.293 33.333 0.00 0.00 0.00 2.10
17 18 9.490379 ACTCCAGAATACAACACTTTACTTTAG 57.510 33.333 0.00 0.00 0.00 1.85
26 27 8.798402 GCTAGATATACTCCAGAATACAACACT 58.202 37.037 0.00 0.00 0.00 3.55
27 28 8.798402 AGCTAGATATACTCCAGAATACAACAC 58.202 37.037 0.00 0.00 0.00 3.32
28 29 8.941995 AGCTAGATATACTCCAGAATACAACA 57.058 34.615 0.00 0.00 0.00 3.33
31 32 9.368416 ACAAAGCTAGATATACTCCAGAATACA 57.632 33.333 0.00 0.00 0.00 2.29
34 35 8.808092 GGTACAAAGCTAGATATACTCCAGAAT 58.192 37.037 0.00 0.00 0.00 2.40
35 36 7.783119 TGGTACAAAGCTAGATATACTCCAGAA 59.217 37.037 0.00 0.00 31.92 3.02
36 37 7.295340 TGGTACAAAGCTAGATATACTCCAGA 58.705 38.462 0.00 0.00 31.92 3.86
37 38 7.526142 TGGTACAAAGCTAGATATACTCCAG 57.474 40.000 0.00 0.00 31.92 3.86
55 56 3.932822 AGTATTGCATGTCGTTGGTACA 58.067 40.909 0.00 0.00 0.00 2.90
56 57 4.269363 GGTAGTATTGCATGTCGTTGGTAC 59.731 45.833 0.00 0.00 0.00 3.34
57 58 4.435425 GGTAGTATTGCATGTCGTTGGTA 58.565 43.478 0.00 0.00 0.00 3.25
58 59 3.267483 GGTAGTATTGCATGTCGTTGGT 58.733 45.455 0.00 0.00 0.00 3.67
59 60 2.612212 GGGTAGTATTGCATGTCGTTGG 59.388 50.000 0.00 0.00 0.00 3.77
60 61 3.531538 AGGGTAGTATTGCATGTCGTTG 58.468 45.455 0.00 0.00 0.00 4.10
61 62 3.906720 AGGGTAGTATTGCATGTCGTT 57.093 42.857 0.00 0.00 0.00 3.85
62 63 5.114081 GTTTAGGGTAGTATTGCATGTCGT 58.886 41.667 0.00 0.00 0.00 4.34
63 64 4.510340 GGTTTAGGGTAGTATTGCATGTCG 59.490 45.833 0.00 0.00 0.00 4.35
64 65 4.820173 GGGTTTAGGGTAGTATTGCATGTC 59.180 45.833 0.00 0.00 0.00 3.06
65 66 4.477213 AGGGTTTAGGGTAGTATTGCATGT 59.523 41.667 0.00 0.00 0.00 3.21
66 67 5.048846 AGGGTTTAGGGTAGTATTGCATG 57.951 43.478 0.00 0.00 0.00 4.06
67 68 6.835029 TTAGGGTTTAGGGTAGTATTGCAT 57.165 37.500 0.00 0.00 0.00 3.96
68 69 6.216046 AGTTTAGGGTTTAGGGTAGTATTGCA 59.784 38.462 0.00 0.00 0.00 4.08
69 70 6.656902 AGTTTAGGGTTTAGGGTAGTATTGC 58.343 40.000 0.00 0.00 0.00 3.56
72 73 8.772250 GGTAAAGTTTAGGGTTTAGGGTAGTAT 58.228 37.037 0.00 0.00 0.00 2.12
73 74 7.093509 CGGTAAAGTTTAGGGTTTAGGGTAGTA 60.094 40.741 0.00 0.00 0.00 1.82
74 75 6.295859 CGGTAAAGTTTAGGGTTTAGGGTAGT 60.296 42.308 0.00 0.00 0.00 2.73
75 76 6.108687 CGGTAAAGTTTAGGGTTTAGGGTAG 58.891 44.000 0.00 0.00 0.00 3.18
76 77 5.570641 GCGGTAAAGTTTAGGGTTTAGGGTA 60.571 44.000 0.00 0.00 0.00 3.69
77 78 4.807303 GCGGTAAAGTTTAGGGTTTAGGGT 60.807 45.833 0.00 0.00 0.00 4.34
78 79 3.691118 GCGGTAAAGTTTAGGGTTTAGGG 59.309 47.826 0.00 0.00 0.00 3.53
79 80 3.371898 CGCGGTAAAGTTTAGGGTTTAGG 59.628 47.826 0.00 0.00 0.00 2.69
80 81 3.181517 GCGCGGTAAAGTTTAGGGTTTAG 60.182 47.826 8.83 0.00 0.00 1.85
81 82 2.741517 GCGCGGTAAAGTTTAGGGTTTA 59.258 45.455 8.83 0.00 0.00 2.01
82 83 1.536766 GCGCGGTAAAGTTTAGGGTTT 59.463 47.619 8.83 0.00 0.00 3.27
83 84 1.159285 GCGCGGTAAAGTTTAGGGTT 58.841 50.000 8.83 0.00 0.00 4.11
84 85 0.674581 GGCGCGGTAAAGTTTAGGGT 60.675 55.000 8.83 0.00 0.00 4.34
85 86 0.674269 TGGCGCGGTAAAGTTTAGGG 60.674 55.000 8.83 0.00 0.00 3.53
86 87 1.135888 GTTGGCGCGGTAAAGTTTAGG 60.136 52.381 8.83 0.00 0.00 2.69
87 88 1.135888 GGTTGGCGCGGTAAAGTTTAG 60.136 52.381 8.83 0.00 0.00 1.85
88 89 0.873721 GGTTGGCGCGGTAAAGTTTA 59.126 50.000 8.83 0.00 0.00 2.01
89 90 0.820482 AGGTTGGCGCGGTAAAGTTT 60.820 50.000 8.83 0.00 0.00 2.66
90 91 1.228033 AGGTTGGCGCGGTAAAGTT 60.228 52.632 8.83 0.00 0.00 2.66
91 92 1.964373 CAGGTTGGCGCGGTAAAGT 60.964 57.895 8.83 0.00 0.00 2.66
92 93 2.686816 CCAGGTTGGCGCGGTAAAG 61.687 63.158 8.83 0.00 0.00 1.85
93 94 2.670251 CCAGGTTGGCGCGGTAAA 60.670 61.111 8.83 0.00 0.00 2.01
94 95 3.943691 ACCAGGTTGGCGCGGTAA 61.944 61.111 8.83 0.00 42.67 2.85
95 96 4.690719 CACCAGGTTGGCGCGGTA 62.691 66.667 8.83 0.00 42.67 4.02
98 99 4.680237 TCTCACCAGGTTGGCGCG 62.680 66.667 0.00 0.00 42.67 6.86
99 100 1.856265 CTTTCTCACCAGGTTGGCGC 61.856 60.000 0.00 0.00 42.67 6.53
100 101 1.856265 GCTTTCTCACCAGGTTGGCG 61.856 60.000 0.00 0.00 42.67 5.69
101 102 0.823356 TGCTTTCTCACCAGGTTGGC 60.823 55.000 0.00 0.00 42.67 4.52
102 103 1.242076 CTGCTTTCTCACCAGGTTGG 58.758 55.000 0.00 0.00 45.02 3.77
103 104 0.595095 GCTGCTTTCTCACCAGGTTG 59.405 55.000 0.00 0.00 0.00 3.77
104 105 0.886490 CGCTGCTTTCTCACCAGGTT 60.886 55.000 0.00 0.00 0.00 3.50
105 106 1.302033 CGCTGCTTTCTCACCAGGT 60.302 57.895 0.00 0.00 0.00 4.00
106 107 2.037136 CCGCTGCTTTCTCACCAGG 61.037 63.158 0.00 0.00 0.00 4.45
107 108 2.037136 CCCGCTGCTTTCTCACCAG 61.037 63.158 0.00 0.00 0.00 4.00
108 109 2.032528 CCCGCTGCTTTCTCACCA 59.967 61.111 0.00 0.00 0.00 4.17
109 110 3.435186 GCCCGCTGCTTTCTCACC 61.435 66.667 0.00 0.00 36.87 4.02
110 111 3.435186 GGCCCGCTGCTTTCTCAC 61.435 66.667 0.00 0.00 40.92 3.51
115 116 3.323758 TATGACGGCCCGCTGCTTT 62.324 57.895 1.23 0.00 40.92 3.51
116 117 3.740128 CTATGACGGCCCGCTGCTT 62.740 63.158 1.23 0.00 40.92 3.91
117 118 4.227134 CTATGACGGCCCGCTGCT 62.227 66.667 1.23 0.00 40.92 4.24
118 119 4.221422 TCTATGACGGCCCGCTGC 62.221 66.667 1.23 0.00 40.16 5.25
119 120 2.279517 GTCTATGACGGCCCGCTG 60.280 66.667 1.23 0.00 0.00 5.18
120 121 2.442272 AGTCTATGACGGCCCGCT 60.442 61.111 1.23 0.00 37.67 5.52
121 122 2.027751 GAGTCTATGACGGCCCGC 59.972 66.667 1.23 0.00 37.67 6.13
122 123 1.200252 CTATGAGTCTATGACGGCCCG 59.800 57.143 0.00 0.00 37.67 6.13
123 124 1.546476 CCTATGAGTCTATGACGGCCC 59.454 57.143 0.00 0.00 37.67 5.80
124 125 2.029828 CACCTATGAGTCTATGACGGCC 60.030 54.545 0.00 0.00 37.67 6.13
125 126 2.623889 ACACCTATGAGTCTATGACGGC 59.376 50.000 0.00 0.00 37.67 5.68
126 127 5.473846 ACATACACCTATGAGTCTATGACGG 59.526 44.000 0.00 0.00 34.58 4.79
127 128 6.204882 TGACATACACCTATGAGTCTATGACG 59.795 42.308 0.00 0.00 34.58 4.35
128 129 7.364200 GTGACATACACCTATGAGTCTATGAC 58.636 42.308 0.00 0.00 43.05 3.06
129 130 7.511959 GTGACATACACCTATGAGTCTATGA 57.488 40.000 0.00 0.00 43.05 2.15
144 145 3.381590 CGAGGAAGAGGATGTGACATACA 59.618 47.826 10.91 0.00 44.87 2.29
145 146 3.243569 CCGAGGAAGAGGATGTGACATAC 60.244 52.174 0.00 0.00 0.00 2.39
146 147 2.959030 CCGAGGAAGAGGATGTGACATA 59.041 50.000 0.00 0.00 0.00 2.29
147 148 1.759445 CCGAGGAAGAGGATGTGACAT 59.241 52.381 0.00 0.00 0.00 3.06
148 149 1.186200 CCGAGGAAGAGGATGTGACA 58.814 55.000 0.00 0.00 0.00 3.58
149 150 1.134965 CACCGAGGAAGAGGATGTGAC 60.135 57.143 0.00 0.00 0.00 3.67
150 151 1.186200 CACCGAGGAAGAGGATGTGA 58.814 55.000 0.00 0.00 0.00 3.58
151 152 0.898320 ACACCGAGGAAGAGGATGTG 59.102 55.000 0.00 0.00 0.00 3.21
152 153 1.276421 CAACACCGAGGAAGAGGATGT 59.724 52.381 0.00 0.00 0.00 3.06
153 154 1.406069 CCAACACCGAGGAAGAGGATG 60.406 57.143 0.00 0.00 0.00 3.51
154 155 0.905357 CCAACACCGAGGAAGAGGAT 59.095 55.000 0.00 0.00 0.00 3.24
155 156 1.192146 CCCAACACCGAGGAAGAGGA 61.192 60.000 0.00 0.00 0.00 3.71
156 157 1.296715 CCCAACACCGAGGAAGAGG 59.703 63.158 0.00 0.00 0.00 3.69
169 170 1.520787 CGCTCGACCATACCCCAAC 60.521 63.158 0.00 0.00 0.00 3.77
170 171 2.897207 CGCTCGACCATACCCCAA 59.103 61.111 0.00 0.00 0.00 4.12
186 187 4.086199 TCTTTTTATTAGGGTTTGCGCG 57.914 40.909 0.00 0.00 0.00 6.86
189 190 9.542462 AGTTCTTTTCTTTTTATTAGGGTTTGC 57.458 29.630 0.00 0.00 0.00 3.68
199 200 9.481340 GGAAGATGCAAGTTCTTTTCTTTTTAT 57.519 29.630 10.33 0.00 33.65 1.40
203 204 5.067805 ACGGAAGATGCAAGTTCTTTTCTTT 59.932 36.000 10.33 0.00 33.65 2.52
206 207 4.222114 CACGGAAGATGCAAGTTCTTTTC 58.778 43.478 10.33 3.27 33.65 2.29
211 213 1.160137 AGCACGGAAGATGCAAGTTC 58.840 50.000 0.00 0.00 45.92 3.01
219 221 2.763448 AGAGAAAGCTAGCACGGAAGAT 59.237 45.455 18.83 0.00 0.00 2.40
229 231 5.804979 GCAAGTTGTAGAGAGAGAAAGCTAG 59.195 44.000 4.48 0.00 0.00 3.42
353 364 1.094073 CGCAGCTTATTGCCTCAGCT 61.094 55.000 0.00 0.00 45.02 4.24
356 367 1.647545 GCACGCAGCTTATTGCCTCA 61.648 55.000 0.00 0.00 44.23 3.86
458 540 2.393646 AGATGAGTTCTAGGCACTCCC 58.606 52.381 16.20 10.39 40.12 4.30
506 588 9.793259 AGGTTGTATCTGTTCTTATTTTTCAGA 57.207 29.630 0.00 0.00 39.05 3.27
510 592 9.498176 ACGTAGGTTGTATCTGTTCTTATTTTT 57.502 29.630 0.00 0.00 0.00 1.94
632 714 4.705110 AAGGGCCAAAAGCTTTGTAATT 57.295 36.364 13.54 0.89 43.05 1.40
634 716 4.495690 AAAAGGGCCAAAAGCTTTGTAA 57.504 36.364 13.54 0.00 43.05 2.41
635 717 4.195416 CAAAAAGGGCCAAAAGCTTTGTA 58.805 39.130 13.54 0.00 43.05 2.41
636 718 3.016031 CAAAAAGGGCCAAAAGCTTTGT 58.984 40.909 13.54 0.08 43.05 2.83
639 721 4.347876 AGATACAAAAAGGGCCAAAAGCTT 59.652 37.500 6.18 0.00 43.05 3.74
729 811 2.437359 AGCCGCCTCACTTGCATC 60.437 61.111 0.00 0.00 0.00 3.91
883 982 0.326048 AGTGGGAGTGAGGAGATGGG 60.326 60.000 0.00 0.00 0.00 4.00
960 1067 2.135933 GAGACGGTTGACTTGTCAAGG 58.864 52.381 16.85 12.80 35.09 3.61
974 1081 1.649390 CGAGTGGGAGTGAGAGACGG 61.649 65.000 0.00 0.00 0.00 4.79
1009 1116 0.460311 AGTACGGCACATACCTGAGC 59.540 55.000 0.00 0.00 38.14 4.26
1088 1245 0.171903 GTCCTGAATGTGCACCATGC 59.828 55.000 15.69 7.31 45.29 4.06
1089 1246 0.448990 CGTCCTGAATGTGCACCATG 59.551 55.000 15.69 2.48 32.82 3.66
1090 1247 0.036732 ACGTCCTGAATGTGCACCAT 59.963 50.000 15.69 2.18 34.36 3.55
1422 1620 4.003788 ACCAGGGTCTCGTTGCCG 62.004 66.667 0.00 0.00 0.00 5.69
1468 1669 4.570663 GATCTCCGTCCACCCGCG 62.571 72.222 0.00 0.00 0.00 6.46
1608 1812 0.108585 TGTCCCTGAGTTGCCTGAAC 59.891 55.000 0.00 0.00 34.40 3.18
1641 1845 1.296056 GGTTACGTGGACGCATGCTT 61.296 55.000 17.13 6.17 44.43 3.91
1649 1853 4.023536 ACATGAAAACATGGTTACGTGGAC 60.024 41.667 13.44 0.00 37.94 4.02
1801 2768 1.227645 GGCGCTATCCATCTGCACA 60.228 57.895 7.64 0.00 0.00 4.57
2162 3141 1.417592 CGTGCAGCATCTCGTTGTC 59.582 57.895 0.00 0.00 0.00 3.18
2308 3287 3.285523 CTTGTCGGGGGTCGCGTTA 62.286 63.158 5.77 0.00 40.60 3.18
2392 3371 3.802418 GACCGGGTTGCTGACGTGT 62.802 63.158 6.32 0.00 0.00 4.49
2456 3435 1.189524 TCGGTGAACCAGACGGGAAT 61.190 55.000 0.00 0.00 41.15 3.01
2458 3437 2.203523 TCGGTGAACCAGACGGGA 60.204 61.111 0.00 0.00 41.15 5.14
2641 3620 2.435059 GTCTGGCCTGCCTCGTTC 60.435 66.667 9.97 0.00 36.94 3.95
2676 3655 2.165301 GCGTCCGTCTTCCATTCCG 61.165 63.158 0.00 0.00 0.00 4.30
2728 4069 1.075748 GCCATGGAAGCCCCTGAAT 60.076 57.895 18.40 0.00 35.38 2.57
2824 4168 0.612174 CCAAGTCCACGAGGAGAGGA 60.612 60.000 0.21 0.00 46.92 3.71
2912 4287 5.151454 ACCCATTACCTTGGAAATGTGAAA 58.849 37.500 0.00 0.00 39.25 2.69
2955 4333 3.652057 AGGCAGCACAATACCTTACAT 57.348 42.857 0.00 0.00 0.00 2.29
2969 4347 2.826428 TCGACATCAGATTTAGGCAGC 58.174 47.619 0.00 0.00 0.00 5.25
2982 4360 4.152045 GCTTCAATCATCTCCATCGACATC 59.848 45.833 0.00 0.00 0.00 3.06
3009 4387 9.814899 AACAAATCTTTTGAACAACATATGTCA 57.185 25.926 9.23 0.00 42.99 3.58
3155 4736 8.076178 TGTTTTGTCGTTACTACTTAGTCCTAC 58.924 37.037 0.00 0.00 37.73 3.18
3162 4743 9.195411 CCTTATGTGTTTTGTCGTTACTACTTA 57.805 33.333 0.00 0.00 0.00 2.24
3170 4751 3.004315 CCAGCCTTATGTGTTTTGTCGTT 59.996 43.478 0.00 0.00 0.00 3.85
3201 4782 2.812591 GCATCTCATCTAAGCACCCATG 59.187 50.000 0.00 0.00 0.00 3.66
3202 4783 2.709934 AGCATCTCATCTAAGCACCCAT 59.290 45.455 0.00 0.00 0.00 4.00
3203 4784 2.121948 AGCATCTCATCTAAGCACCCA 58.878 47.619 0.00 0.00 0.00 4.51
3204 4785 2.926778 AGCATCTCATCTAAGCACCC 57.073 50.000 0.00 0.00 0.00 4.61
3232 4813 9.733556 TGGAGAGTTTGATTGTTAAGCTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
3233 4814 8.635765 TGGAGAGTTTGATTGTTAAGCTATTT 57.364 30.769 0.00 0.00 0.00 1.40
3234 4815 8.635765 TTGGAGAGTTTGATTGTTAAGCTATT 57.364 30.769 0.00 0.00 0.00 1.73
3235 4816 8.680903 CATTGGAGAGTTTGATTGTTAAGCTAT 58.319 33.333 0.00 0.00 0.00 2.97
3236 4817 7.362056 GCATTGGAGAGTTTGATTGTTAAGCTA 60.362 37.037 0.00 0.00 0.00 3.32
3237 4818 6.571150 GCATTGGAGAGTTTGATTGTTAAGCT 60.571 38.462 0.00 0.00 0.00 3.74
3238 4819 5.574443 GCATTGGAGAGTTTGATTGTTAAGC 59.426 40.000 0.00 0.00 0.00 3.09
3239 4820 6.680810 TGCATTGGAGAGTTTGATTGTTAAG 58.319 36.000 0.00 0.00 0.00 1.85
3240 4821 6.647334 TGCATTGGAGAGTTTGATTGTTAA 57.353 33.333 0.00 0.00 0.00 2.01
3241 4822 6.839124 ATGCATTGGAGAGTTTGATTGTTA 57.161 33.333 0.00 0.00 0.00 2.41
3242 4823 5.733620 ATGCATTGGAGAGTTTGATTGTT 57.266 34.783 0.00 0.00 0.00 2.83
3243 4824 5.359009 CCTATGCATTGGAGAGTTTGATTGT 59.641 40.000 21.05 0.00 0.00 2.71
3244 4825 5.359009 ACCTATGCATTGGAGAGTTTGATTG 59.641 40.000 30.28 2.88 0.00 2.67
3245 4826 5.513233 ACCTATGCATTGGAGAGTTTGATT 58.487 37.500 30.28 4.17 0.00 2.57
3246 4827 5.121380 ACCTATGCATTGGAGAGTTTGAT 57.879 39.130 30.28 4.88 0.00 2.57
3247 4828 4.574674 ACCTATGCATTGGAGAGTTTGA 57.425 40.909 30.28 0.00 0.00 2.69
3248 4829 4.946157 AGAACCTATGCATTGGAGAGTTTG 59.054 41.667 30.28 4.90 0.00 2.93
3249 4830 5.184892 AGAACCTATGCATTGGAGAGTTT 57.815 39.130 30.28 15.44 0.00 2.66
3250 4831 4.851639 AGAACCTATGCATTGGAGAGTT 57.148 40.909 30.28 15.79 0.00 3.01
3251 4832 4.851639 AAGAACCTATGCATTGGAGAGT 57.148 40.909 30.28 13.92 0.00 3.24
3252 4833 7.718753 AGATTAAAGAACCTATGCATTGGAGAG 59.281 37.037 30.28 10.14 0.00 3.20
3253 4834 7.577303 AGATTAAAGAACCTATGCATTGGAGA 58.423 34.615 30.28 10.16 0.00 3.71
3254 4835 7.814264 AGATTAAAGAACCTATGCATTGGAG 57.186 36.000 30.28 10.89 0.00 3.86
3255 4836 9.866655 ATTAGATTAAAGAACCTATGCATTGGA 57.133 29.630 30.28 9.28 0.00 3.53
3300 4881 0.688418 CATGGGGCCCACACATCATT 60.688 55.000 31.54 6.25 35.80 2.57
3336 4917 2.632987 AGTACTCAAACCAAGCCGTT 57.367 45.000 0.00 0.00 0.00 4.44
3346 4927 1.975680 AGCCCCTTCGAAGTACTCAAA 59.024 47.619 23.03 0.00 0.00 2.69
3391 4973 2.016393 GATGCATCCGTCGGAGGTCA 62.016 60.000 25.37 22.30 35.75 4.02
3410 4992 2.415010 CTCGACGATGAGCCCCAG 59.585 66.667 0.00 0.00 0.00 4.45
3423 5005 2.026157 GACGCATGCGATCCTCGA 59.974 61.111 43.72 0.00 43.74 4.04
3438 5020 3.330267 CCCTTCTTGTACAGCTTGAGAC 58.670 50.000 0.00 0.00 0.00 3.36
3442 5024 1.168714 GCCCCTTCTTGTACAGCTTG 58.831 55.000 0.00 0.00 0.00 4.01
3464 5046 2.479650 GTCCTCGTCCTCGTCGTG 59.520 66.667 0.00 0.00 38.33 4.35
3465 5047 3.117171 CGTCCTCGTCCTCGTCGT 61.117 66.667 0.00 0.00 38.33 4.34
3466 5048 2.800581 CTCGTCCTCGTCCTCGTCG 61.801 68.421 0.00 0.00 38.33 5.12
3467 5049 2.462782 CCTCGTCCTCGTCCTCGTC 61.463 68.421 0.00 0.00 38.33 4.20
3468 5050 2.436292 CCTCGTCCTCGTCCTCGT 60.436 66.667 0.00 0.00 38.33 4.18
3469 5051 2.125229 TCCTCGTCCTCGTCCTCG 60.125 66.667 0.00 0.00 38.33 4.63
3472 5054 3.507009 CCGTCCTCGTCCTCGTCC 61.507 72.222 0.00 0.00 38.33 4.79
3505 5087 1.848652 AAGCTCAATCATTGCAGGCT 58.151 45.000 6.54 6.54 34.26 4.58
3510 5092 3.065786 TCCGATGAAAGCTCAATCATTGC 59.934 43.478 14.54 3.67 36.45 3.56
3511 5093 4.888038 TCCGATGAAAGCTCAATCATTG 57.112 40.909 13.60 13.60 36.45 2.82
3512 5094 6.769822 ACTATTCCGATGAAAGCTCAATCATT 59.230 34.615 10.02 0.00 36.45 2.57
3513 5095 6.294473 ACTATTCCGATGAAAGCTCAATCAT 58.706 36.000 8.80 8.80 38.93 2.45
3518 5105 5.084818 TGAACTATTCCGATGAAAGCTCA 57.915 39.130 0.00 0.00 33.32 4.26
3539 5126 7.231705 TCAAACATTGCACACTACAAATTTG 57.768 32.000 16.67 16.67 37.90 2.32
3549 5136 9.264782 GCATAATTAAATTCAAACATTGCACAC 57.735 29.630 0.00 0.00 0.00 3.82
3624 7692 1.737793 CAACCTTATTCCTGGACGTGC 59.262 52.381 0.00 0.00 0.00 5.34
3694 7762 8.801299 TGATCAATAGGTTGTTTGCTTTAATCA 58.199 29.630 0.00 0.00 36.69 2.57
3731 7799 9.651913 ACATTACTCAATTGACAAAACTTTTGT 57.348 25.926 17.93 17.93 34.97 2.83
3756 7824 9.561270 GCAATTTTCTCTTCCTAGTTTCATTAC 57.439 33.333 0.00 0.00 0.00 1.89
3757 7825 8.739972 GGCAATTTTCTCTTCCTAGTTTCATTA 58.260 33.333 0.00 0.00 0.00 1.90
3758 7826 7.452813 AGGCAATTTTCTCTTCCTAGTTTCATT 59.547 33.333 0.00 0.00 0.00 2.57
3759 7827 6.950619 AGGCAATTTTCTCTTCCTAGTTTCAT 59.049 34.615 0.00 0.00 0.00 2.57
3760 7828 6.306987 AGGCAATTTTCTCTTCCTAGTTTCA 58.693 36.000 0.00 0.00 0.00 2.69
3761 7829 6.825944 AGGCAATTTTCTCTTCCTAGTTTC 57.174 37.500 0.00 0.00 0.00 2.78
3762 7830 7.890655 ACATAGGCAATTTTCTCTTCCTAGTTT 59.109 33.333 0.00 0.00 30.67 2.66
3763 7831 7.406104 ACATAGGCAATTTTCTCTTCCTAGTT 58.594 34.615 0.00 0.00 30.67 2.24
3764 7832 6.963322 ACATAGGCAATTTTCTCTTCCTAGT 58.037 36.000 0.00 0.00 30.67 2.57
3765 7833 7.337942 ACAACATAGGCAATTTTCTCTTCCTAG 59.662 37.037 0.00 0.00 30.67 3.02
3766 7834 7.175104 ACAACATAGGCAATTTTCTCTTCCTA 58.825 34.615 0.00 0.00 0.00 2.94
3767 7835 6.012745 ACAACATAGGCAATTTTCTCTTCCT 58.987 36.000 0.00 0.00 0.00 3.36
3768 7836 6.272822 ACAACATAGGCAATTTTCTCTTCC 57.727 37.500 0.00 0.00 0.00 3.46
3769 7837 7.370383 TGAACAACATAGGCAATTTTCTCTTC 58.630 34.615 0.00 0.00 0.00 2.87
3770 7838 7.288810 TGAACAACATAGGCAATTTTCTCTT 57.711 32.000 0.00 0.00 0.00 2.85
3771 7839 6.899393 TGAACAACATAGGCAATTTTCTCT 57.101 33.333 0.00 0.00 0.00 3.10
3772 7840 7.945033 TTTGAACAACATAGGCAATTTTCTC 57.055 32.000 0.00 0.00 0.00 2.87
3773 7841 8.203485 TCTTTTGAACAACATAGGCAATTTTCT 58.797 29.630 0.00 0.00 0.00 2.52
3774 7842 8.364129 TCTTTTGAACAACATAGGCAATTTTC 57.636 30.769 0.00 0.00 0.00 2.29
3775 7843 8.907222 ATCTTTTGAACAACATAGGCAATTTT 57.093 26.923 0.00 0.00 0.00 1.82
3776 7844 8.907222 AATCTTTTGAACAACATAGGCAATTT 57.093 26.923 0.00 0.00 0.00 1.82
3777 7845 8.776470 CAAATCTTTTGAACAACATAGGCAATT 58.224 29.630 0.00 0.00 0.00 2.32
3778 7846 7.933033 ACAAATCTTTTGAACAACATAGGCAAT 59.067 29.630 6.96 0.00 0.00 3.56
3779 7847 7.271511 ACAAATCTTTTGAACAACATAGGCAA 58.728 30.769 6.96 0.00 0.00 4.52
3780 7848 6.815089 ACAAATCTTTTGAACAACATAGGCA 58.185 32.000 6.96 0.00 0.00 4.75
3781 7849 7.653311 AGAACAAATCTTTTGAACAACATAGGC 59.347 33.333 6.96 0.00 33.39 3.93
3782 7850 8.971321 CAGAACAAATCTTTTGAACAACATAGG 58.029 33.333 6.96 0.00 35.73 2.57
3783 7851 9.734620 TCAGAACAAATCTTTTGAACAACATAG 57.265 29.630 6.96 0.00 35.73 2.23
3785 7853 9.603921 ATTCAGAACAAATCTTTTGAACAACAT 57.396 25.926 6.96 0.00 35.73 2.71
3786 7854 9.434420 AATTCAGAACAAATCTTTTGAACAACA 57.566 25.926 6.96 0.00 35.73 3.33
3815 7883 6.964741 TGTACGTTACTCAGTTGACAAAAA 57.035 33.333 0.00 0.00 0.00 1.94
3816 7884 6.964741 TTGTACGTTACTCAGTTGACAAAA 57.035 33.333 0.00 0.00 0.00 2.44
3817 7885 6.964741 TTTGTACGTTACTCAGTTGACAAA 57.035 33.333 0.00 0.00 34.22 2.83
3818 7886 8.821147 ATATTTGTACGTTACTCAGTTGACAA 57.179 30.769 0.00 0.00 0.00 3.18
3819 7887 8.821147 AATATTTGTACGTTACTCAGTTGACA 57.179 30.769 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.