Multiple sequence alignment - TraesCS5A01G440900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G440900 chr5A 100.000 3931 0 0 1 3931 621885418 621881488 0.000000e+00 7260.0
1 TraesCS5A01G440900 chr5A 82.288 813 94 25 910 1704 621867822 621867042 0.000000e+00 658.0
2 TraesCS5A01G440900 chr5A 85.312 320 47 0 1376 1695 622224980 622225299 8.140000e-87 331.0
3 TraesCS5A01G440900 chr5A 84.783 322 45 2 1376 1695 622145002 622145321 1.760000e-83 320.0
4 TraesCS5A01G440900 chr5A 93.333 45 1 2 2279 2322 622151137 622151094 9.120000e-07 65.8
5 TraesCS5A01G440900 chr5D 94.774 1435 59 9 811 2239 497845187 497843763 0.000000e+00 2220.0
6 TraesCS5A01G440900 chr5D 95.035 866 32 4 2240 3103 497843385 497842529 0.000000e+00 1351.0
7 TraesCS5A01G440900 chr5D 91.724 725 48 4 89 802 497852514 497851791 0.000000e+00 996.0
8 TraesCS5A01G440900 chr5D 80.438 731 75 40 1011 1721 497838053 497837371 2.730000e-136 496.0
9 TraesCS5A01G440900 chr5D 95.266 169 5 1 804 972 497851430 497851265 8.380000e-67 265.0
10 TraesCS5A01G440900 chr5D 84.049 163 14 5 910 1060 497838264 497838102 3.170000e-31 147.0
11 TraesCS5A01G440900 chr5B 94.197 965 45 6 811 1773 617052185 617051230 0.000000e+00 1461.0
12 TraesCS5A01G440900 chr5B 93.735 830 34 9 2408 3230 617050105 617049287 0.000000e+00 1229.0
13 TraesCS5A01G440900 chr5B 88.070 746 67 10 89 814 617081812 617081069 0.000000e+00 865.0
14 TraesCS5A01G440900 chr5B 91.368 475 31 6 1772 2239 617051070 617050599 3.310000e-180 641.0
15 TraesCS5A01G440900 chr5B 83.835 631 73 14 1097 1704 617038901 617038277 1.230000e-159 573.0
16 TraesCS5A01G440900 chr5B 85.653 467 66 1 3334 3800 617049167 617048702 1.270000e-134 490.0
17 TraesCS5A01G440900 chr5B 85.000 320 48 0 1376 1695 617258787 617259106 3.790000e-85 326.0
18 TraesCS5A01G440900 chr5B 83.784 333 54 0 1376 1708 617284602 617284934 2.280000e-82 316.0
19 TraesCS5A01G440900 chr5B 99.180 122 1 0 2240 2361 617050224 617050103 1.840000e-53 220.0
20 TraesCS5A01G440900 chr5B 100.000 28 0 0 945 972 617080326 617080299 7.000000e-03 52.8
21 TraesCS5A01G440900 chr4A 96.825 126 4 0 3801 3926 21517430 21517305 1.110000e-50 211.0
22 TraesCS5A01G440900 chr7D 94.697 132 7 0 3800 3931 529450627 529450496 5.150000e-49 206.0
23 TraesCS5A01G440900 chr6D 93.182 132 9 0 3800 3931 31801687 31801818 1.110000e-45 195.0
24 TraesCS5A01G440900 chr6D 91.304 138 8 4 3796 3931 162252423 162252558 6.710000e-43 185.0
25 TraesCS5A01G440900 chr3B 93.182 132 6 3 3801 3931 747808343 747808214 1.440000e-44 191.0
26 TraesCS5A01G440900 chr3B 92.481 133 8 2 3800 3931 22829146 22829277 5.190000e-44 189.0
27 TraesCS5A01G440900 chr3B 84.507 71 10 1 3489 3558 568572996 568572926 7.050000e-08 69.4
28 TraesCS5A01G440900 chrUn 91.729 133 11 0 3799 3931 188896213 188896345 6.710000e-43 185.0
29 TraesCS5A01G440900 chrUn 91.667 132 11 0 3799 3930 188931984 188932115 2.410000e-42 183.0
30 TraesCS5A01G440900 chrUn 91.667 132 11 0 3800 3931 402496407 402496276 2.410000e-42 183.0
31 TraesCS5A01G440900 chr3D 76.068 234 47 8 3410 3637 58082023 58081793 3.210000e-21 113.0
32 TraesCS5A01G440900 chr3D 85.185 81 11 1 3561 3641 328365045 328365124 9.050000e-12 82.4
33 TraesCS5A01G440900 chr6B 83.036 112 17 2 3499 3609 657063031 657063141 2.500000e-17 100.0
34 TraesCS5A01G440900 chr7A 74.545 165 36 6 3475 3636 708737710 708737549 2.540000e-07 67.6
35 TraesCS5A01G440900 chr3A 73.913 184 41 5 3499 3678 483272448 483272628 2.540000e-07 67.6
36 TraesCS5A01G440900 chr1D 100.000 28 0 0 3570 3597 92966410 92966437 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G440900 chr5A 621881488 621885418 3930 True 7260.0 7260 100.0000 1 3931 1 chr5A.!!$R2 3930
1 TraesCS5A01G440900 chr5A 621867042 621867822 780 True 658.0 658 82.2880 910 1704 1 chr5A.!!$R1 794
2 TraesCS5A01G440900 chr5D 497842529 497845187 2658 True 1785.5 2220 94.9045 811 3103 2 chr5D.!!$R2 2292
3 TraesCS5A01G440900 chr5D 497851265 497852514 1249 True 630.5 996 93.4950 89 972 2 chr5D.!!$R3 883
4 TraesCS5A01G440900 chr5D 497837371 497838264 893 True 321.5 496 82.2435 910 1721 2 chr5D.!!$R1 811
5 TraesCS5A01G440900 chr5B 617048702 617052185 3483 True 808.2 1461 92.8266 811 3800 5 chr5B.!!$R2 2989
6 TraesCS5A01G440900 chr5B 617038277 617038901 624 True 573.0 573 83.8350 1097 1704 1 chr5B.!!$R1 607
7 TraesCS5A01G440900 chr5B 617080299 617081812 1513 True 458.9 865 94.0350 89 972 2 chr5B.!!$R3 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.606401 CCGTGGTTCAATGGTGCTCT 60.606 55.0 0.0 0.0 0.0 4.09 F
548 560 0.794473 CCGAAGCCTAACCAAACGAC 59.206 55.0 0.0 0.0 0.0 4.34 F
1738 2563 0.586802 GTTGACGCAGGTGGTTCTTC 59.413 55.0 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 2193 0.108992 GGATGAACGCCGTCTGTGTA 60.109 55.0 0.00 0.00 36.45 2.90 R
1949 2937 0.109086 ACCAGCTCGATGTCGTTCTG 60.109 55.0 14.66 14.66 40.80 3.02 R
3555 4987 0.109458 ATGCGCTTTGTAGTCGACGA 60.109 50.0 9.73 0.94 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.758172 ACCGTGGTTCAATGGTGC 58.242 55.556 0.00 0.00 32.33 5.01
18 19 1.150536 ACCGTGGTTCAATGGTGCT 59.849 52.632 0.00 0.00 32.33 4.40
19 20 0.889186 ACCGTGGTTCAATGGTGCTC 60.889 55.000 0.00 0.00 32.33 4.26
20 21 0.606401 CCGTGGTTCAATGGTGCTCT 60.606 55.000 0.00 0.00 0.00 4.09
21 22 1.238439 CGTGGTTCAATGGTGCTCTT 58.762 50.000 0.00 0.00 0.00 2.85
22 23 1.197721 CGTGGTTCAATGGTGCTCTTC 59.802 52.381 0.00 0.00 0.00 2.87
23 24 1.197721 GTGGTTCAATGGTGCTCTTCG 59.802 52.381 0.00 0.00 0.00 3.79
24 25 1.071542 TGGTTCAATGGTGCTCTTCGA 59.928 47.619 0.00 0.00 0.00 3.71
25 26 1.734465 GGTTCAATGGTGCTCTTCGAG 59.266 52.381 0.00 0.00 0.00 4.04
26 27 2.417719 GTTCAATGGTGCTCTTCGAGT 58.582 47.619 0.00 0.00 31.39 4.18
27 28 3.585862 GTTCAATGGTGCTCTTCGAGTA 58.414 45.455 0.00 0.00 31.39 2.59
28 29 4.184629 GTTCAATGGTGCTCTTCGAGTAT 58.815 43.478 0.00 0.00 31.39 2.12
29 30 4.046938 TCAATGGTGCTCTTCGAGTATC 57.953 45.455 0.00 0.00 31.39 2.24
45 46 4.344448 GAGTATCGAGTCTCAAGTTTCGG 58.656 47.826 12.70 0.00 34.08 4.30
46 47 2.656560 ATCGAGTCTCAAGTTTCGGG 57.343 50.000 0.00 0.00 34.08 5.14
47 48 1.325355 TCGAGTCTCAAGTTTCGGGT 58.675 50.000 0.00 0.00 34.08 5.28
48 49 1.684983 TCGAGTCTCAAGTTTCGGGTT 59.315 47.619 0.00 0.00 34.08 4.11
49 50 1.792949 CGAGTCTCAAGTTTCGGGTTG 59.207 52.381 0.00 0.00 0.00 3.77
50 51 2.802057 CGAGTCTCAAGTTTCGGGTTGT 60.802 50.000 0.00 0.00 0.00 3.32
51 52 3.551454 CGAGTCTCAAGTTTCGGGTTGTA 60.551 47.826 0.00 0.00 0.00 2.41
52 53 4.374399 GAGTCTCAAGTTTCGGGTTGTAA 58.626 43.478 0.00 0.00 0.00 2.41
53 54 4.773013 AGTCTCAAGTTTCGGGTTGTAAA 58.227 39.130 0.00 0.00 0.00 2.01
68 69 5.678955 GTTGTAAACCCTAGGTCTGATCT 57.321 43.478 8.29 0.00 42.21 2.75
69 70 6.051179 GTTGTAAACCCTAGGTCTGATCTT 57.949 41.667 8.29 0.00 42.21 2.40
70 71 6.473758 GTTGTAAACCCTAGGTCTGATCTTT 58.526 40.000 8.29 0.00 42.21 2.52
71 72 6.295719 TGTAAACCCTAGGTCTGATCTTTC 57.704 41.667 8.29 0.00 33.12 2.62
72 73 5.783360 TGTAAACCCTAGGTCTGATCTTTCA 59.217 40.000 8.29 0.00 33.12 2.69
73 74 6.443849 TGTAAACCCTAGGTCTGATCTTTCAT 59.556 38.462 8.29 0.00 33.12 2.57
74 75 5.365021 AACCCTAGGTCTGATCTTTCATG 57.635 43.478 8.29 0.00 33.12 3.07
75 76 4.366267 ACCCTAGGTCTGATCTTTCATGT 58.634 43.478 8.29 0.00 0.00 3.21
76 77 4.785376 ACCCTAGGTCTGATCTTTCATGTT 59.215 41.667 8.29 0.00 0.00 2.71
77 78 5.251700 ACCCTAGGTCTGATCTTTCATGTTT 59.748 40.000 8.29 0.00 0.00 2.83
78 79 6.443849 ACCCTAGGTCTGATCTTTCATGTTTA 59.556 38.462 8.29 0.00 0.00 2.01
79 80 6.763610 CCCTAGGTCTGATCTTTCATGTTTAC 59.236 42.308 8.29 0.00 0.00 2.01
80 81 7.331026 CCTAGGTCTGATCTTTCATGTTTACA 58.669 38.462 0.00 0.00 0.00 2.41
81 82 7.278868 CCTAGGTCTGATCTTTCATGTTTACAC 59.721 40.741 0.00 0.00 0.00 2.90
82 83 6.773638 AGGTCTGATCTTTCATGTTTACACT 58.226 36.000 0.00 0.00 0.00 3.55
83 84 7.227156 AGGTCTGATCTTTCATGTTTACACTT 58.773 34.615 0.00 0.00 0.00 3.16
84 85 7.721399 AGGTCTGATCTTTCATGTTTACACTTT 59.279 33.333 0.00 0.00 0.00 2.66
85 86 7.805071 GGTCTGATCTTTCATGTTTACACTTTG 59.195 37.037 0.00 0.00 0.00 2.77
86 87 8.345565 GTCTGATCTTTCATGTTTACACTTTGT 58.654 33.333 0.00 0.00 0.00 2.83
87 88 8.902806 TCTGATCTTTCATGTTTACACTTTGTT 58.097 29.630 0.00 0.00 0.00 2.83
99 100 7.596995 TGTTTACACTTTGTTTTCCTTGTTGAG 59.403 33.333 0.00 0.00 0.00 3.02
119 120 1.065564 GGAGTCTGCTTGGAGATTGCT 60.066 52.381 0.00 0.00 0.00 3.91
120 121 2.617532 GGAGTCTGCTTGGAGATTGCTT 60.618 50.000 0.00 0.00 0.00 3.91
147 148 2.951642 TGCTCTTCAAGGTGAAAACCTG 59.048 45.455 0.00 0.00 40.59 4.00
164 165 5.733620 AACCTGTAATCTGACCTTTCGTA 57.266 39.130 0.00 0.00 0.00 3.43
200 201 3.118738 ACGCATCGTTTCCCTTCTTAGAT 60.119 43.478 0.00 0.00 36.35 1.98
211 212 6.949352 TCCCTTCTTAGATGCATTGATTTC 57.051 37.500 0.00 0.00 0.00 2.17
242 243 7.422878 TCTCTATCATAGTATGTGTGTCGTC 57.577 40.000 9.94 0.00 0.00 4.20
245 246 7.639945 TCTATCATAGTATGTGTGTCGTCAAG 58.360 38.462 9.94 0.00 0.00 3.02
290 291 2.200792 TGTTGTGTGCCGTTTGATTG 57.799 45.000 0.00 0.00 0.00 2.67
368 379 3.386486 TGTGTGACTTTACTAGTTGCCG 58.614 45.455 0.00 0.00 37.17 5.69
380 391 5.545658 ACTAGTTGCCGTTGTGATTTATG 57.454 39.130 0.00 0.00 0.00 1.90
386 397 3.058570 TGCCGTTGTGATTTATGTGTGTC 60.059 43.478 0.00 0.00 0.00 3.67
406 417 1.543802 CTGTTGGTGTTGGTTGTGTGT 59.456 47.619 0.00 0.00 0.00 3.72
421 432 5.125417 GGTTGTGTGTATCCAAACTATGCAT 59.875 40.000 3.79 3.79 29.50 3.96
422 433 6.350110 GGTTGTGTGTATCCAAACTATGCATT 60.350 38.462 3.54 0.00 29.50 3.56
428 439 6.934645 GTGTATCCAAACTATGCATTAGCCTA 59.065 38.462 3.54 0.00 41.13 3.93
474 485 7.701809 TTTTTGCGGGTAAAACTTGAATTAG 57.298 32.000 0.00 0.00 29.89 1.73
483 494 7.272731 GGGTAAAACTTGAATTAGTCAAATCGC 59.727 37.037 0.00 0.00 45.67 4.58
495 506 2.287915 GTCAAATCGCGGCATCATTACT 59.712 45.455 6.13 0.00 0.00 2.24
523 535 7.985184 TCCGCATTACAAAGATTAACTACTCAT 59.015 33.333 0.00 0.00 0.00 2.90
542 554 1.927487 TGTAGACCGAAGCCTAACCA 58.073 50.000 0.00 0.00 0.00 3.67
548 560 0.794473 CCGAAGCCTAACCAAACGAC 59.206 55.000 0.00 0.00 0.00 4.34
570 582 6.033619 CGACGGTTCTATTTTCAGTTCTAGTG 59.966 42.308 0.00 0.00 0.00 2.74
660 681 9.442047 ACGAAGAGACAGAAGATATTTGATTTT 57.558 29.630 0.00 0.00 0.00 1.82
783 804 7.469318 CGATCTCGTAATGGCAATAGATATCCT 60.469 40.741 0.00 0.00 34.11 3.24
785 806 8.589701 TCTCGTAATGGCAATAGATATCCTTA 57.410 34.615 0.00 0.00 0.00 2.69
802 823 8.848474 ATATCCTTACCATACAAGCACATAAC 57.152 34.615 0.00 0.00 0.00 1.89
806 830 6.823689 CCTTACCATACAAGCACATAACTCTT 59.176 38.462 0.00 0.00 0.00 2.85
829 1501 4.569214 AGCTTCCACCCAGCTACT 57.431 55.556 0.00 0.00 46.18 2.57
897 1569 2.578021 ACAGCACCCCATTCTACTCATT 59.422 45.455 0.00 0.00 0.00 2.57
972 1646 6.540189 GGTGTTCTTGCATAGATACACTGAAT 59.460 38.462 23.19 0.00 40.64 2.57
1322 2144 7.307101 CGCACCAAGTTTATTTTATTTTGCACT 60.307 33.333 0.00 0.00 0.00 4.40
1344 2166 2.046411 TGCAACGCATGGACCGAT 60.046 55.556 0.00 0.00 31.71 4.18
1349 2171 1.945354 AACGCATGGACCGATCGACT 61.945 55.000 18.66 0.00 0.00 4.18
1456 2278 1.979155 CTGAGGCTCCTCGACACCA 60.979 63.158 12.86 0.00 45.48 4.17
1479 2301 1.019673 GTGCCGACGTCATAGAGGTA 58.980 55.000 17.16 4.69 30.56 3.08
1483 2305 1.595466 CGACGTCATAGAGGTAGGCT 58.405 55.000 17.16 0.00 30.56 4.58
1738 2563 0.586802 GTTGACGCAGGTGGTTCTTC 59.413 55.000 0.00 0.00 0.00 2.87
1739 2564 0.878523 TTGACGCAGGTGGTTCTTCG 60.879 55.000 0.00 0.00 0.00 3.79
1775 2601 6.206829 TCGTAACATGCAGCTACTCTATATGT 59.793 38.462 0.00 0.00 34.19 2.29
1776 2602 6.863645 CGTAACATGCAGCTACTCTATATGTT 59.136 38.462 8.15 8.15 40.50 2.71
1777 2603 7.382488 CGTAACATGCAGCTACTCTATATGTTT 59.618 37.037 8.32 0.00 39.33 2.83
1778 2604 9.046296 GTAACATGCAGCTACTCTATATGTTTT 57.954 33.333 8.32 0.00 39.33 2.43
1779 2605 8.511604 AACATGCAGCTACTCTATATGTTTTT 57.488 30.769 0.00 0.00 37.29 1.94
1949 2937 6.116126 AGTGTTCTTAGGAATGAAGCCATAC 58.884 40.000 0.00 0.00 33.71 2.39
1970 2958 1.132643 AGAACGACATCGAGCTGGTAC 59.867 52.381 8.54 0.00 43.02 3.34
2034 3022 4.810191 AAAAGCACAAACTACCAAACCA 57.190 36.364 0.00 0.00 0.00 3.67
2065 3053 7.651027 AATGCTAAGTAAATCCTCTTGCAAT 57.349 32.000 0.00 0.00 34.40 3.56
2114 3102 1.679898 GCTAGTGGCACAAGTCCCT 59.320 57.895 21.41 0.00 44.16 4.20
2138 3127 2.503356 ACCCAACACCAAGCATGAAAAA 59.497 40.909 0.00 0.00 0.00 1.94
2151 3140 3.893813 GCATGAAAAATAGGAGAGGCCAT 59.106 43.478 5.01 0.00 40.02 4.40
2153 3142 5.383476 CATGAAAAATAGGAGAGGCCATCT 58.617 41.667 5.01 4.75 42.61 2.90
2173 3162 5.209818 TCTCTAACACACTACAACCAAGG 57.790 43.478 0.00 0.00 0.00 3.61
2213 3207 1.472552 CCGGCATGAGAAATCACCGTA 60.473 52.381 0.00 0.00 38.99 4.02
2224 3218 0.612732 ATCACCGTACCCCGAGAACA 60.613 55.000 0.00 0.00 39.56 3.18
2264 3643 2.489329 CAACACCATCTACAAAGGCAGG 59.511 50.000 0.00 0.00 0.00 4.85
2412 3791 6.882140 ACTAGACGAGGAGATATGGTAATGAG 59.118 42.308 0.00 0.00 0.00 2.90
2438 3817 9.027129 GCGTCTTAATCACATACTATTACACAA 57.973 33.333 0.00 0.00 0.00 3.33
2661 4041 2.172717 AGGTCACTAACAAAGCAGTGGT 59.827 45.455 2.20 0.00 42.01 4.16
2700 4080 3.117246 TCGACCCCTGACCATATTAGACT 60.117 47.826 0.00 0.00 0.00 3.24
2813 4193 2.973316 GCCTAACGGTTGCAACGGG 61.973 63.158 32.41 24.17 33.99 5.28
2814 4194 1.301874 CCTAACGGTTGCAACGGGA 60.302 57.895 32.41 21.86 33.99 5.14
2815 4195 0.885596 CCTAACGGTTGCAACGGGAA 60.886 55.000 32.41 21.66 33.99 3.97
2816 4196 1.161843 CTAACGGTTGCAACGGGAAT 58.838 50.000 32.41 22.60 33.99 3.01
2817 4197 2.348660 CTAACGGTTGCAACGGGAATA 58.651 47.619 32.41 22.53 33.99 1.75
2818 4198 0.876399 AACGGTTGCAACGGGAATAC 59.124 50.000 32.41 14.17 33.99 1.89
2819 4199 1.293267 ACGGTTGCAACGGGAATACG 61.293 55.000 32.41 24.71 40.31 3.06
2873 4253 0.875908 GAGTGATAATCGGCAGCGCA 60.876 55.000 11.47 0.00 0.00 6.09
2928 4308 5.298347 CGAGAGAAGGTTTAAAGAGGTTGT 58.702 41.667 0.00 0.00 0.00 3.32
3133 4514 3.759527 CATCACTGGATGCACTTTCAG 57.240 47.619 0.00 0.00 44.03 3.02
3134 4515 3.340928 CATCACTGGATGCACTTTCAGA 58.659 45.455 2.49 0.00 44.03 3.27
3135 4516 3.490439 TCACTGGATGCACTTTCAGAA 57.510 42.857 2.49 0.00 0.00 3.02
3136 4517 4.025040 TCACTGGATGCACTTTCAGAAT 57.975 40.909 2.49 0.00 0.00 2.40
3138 4519 5.559770 TCACTGGATGCACTTTCAGAATTA 58.440 37.500 2.49 0.00 0.00 1.40
3139 4520 6.182627 TCACTGGATGCACTTTCAGAATTAT 58.817 36.000 2.49 0.00 0.00 1.28
3140 4521 6.094464 TCACTGGATGCACTTTCAGAATTATG 59.906 38.462 2.49 0.00 0.00 1.90
3141 4522 5.163581 ACTGGATGCACTTTCAGAATTATGC 60.164 40.000 2.49 6.79 0.00 3.14
3142 4523 4.705991 TGGATGCACTTTCAGAATTATGCA 59.294 37.500 15.25 15.25 46.19 3.96
3143 4524 5.039333 GGATGCACTTTCAGAATTATGCAC 58.961 41.667 15.23 10.73 45.07 4.57
3224 4612 8.686334 CAAGATTGGCAAATAATAGTAGTGGTT 58.314 33.333 3.01 0.00 0.00 3.67
3226 4614 6.767524 TTGGCAAATAATAGTAGTGGTTGG 57.232 37.500 0.00 0.00 0.00 3.77
3229 4617 6.376018 TGGCAAATAATAGTAGTGGTTGGAAC 59.624 38.462 0.00 0.00 0.00 3.62
3230 4618 6.376018 GGCAAATAATAGTAGTGGTTGGAACA 59.624 38.462 0.00 0.00 0.00 3.18
3231 4619 7.068226 GGCAAATAATAGTAGTGGTTGGAACAT 59.932 37.037 0.00 0.00 39.30 2.71
3232 4620 8.129211 GCAAATAATAGTAGTGGTTGGAACATC 58.871 37.037 0.00 0.00 39.30 3.06
3238 4626 4.313819 GGTTGGAACATCCCGGTC 57.686 61.111 0.00 0.00 42.09 4.79
3239 4627 1.378119 GGTTGGAACATCCCGGTCC 60.378 63.158 0.00 0.00 42.09 4.46
3240 4628 1.683441 GTTGGAACATCCCGGTCCT 59.317 57.895 9.28 0.00 39.30 3.85
3241 4629 0.037734 GTTGGAACATCCCGGTCCTT 59.962 55.000 9.28 0.00 39.30 3.36
3242 4630 0.326927 TTGGAACATCCCGGTCCTTC 59.673 55.000 9.28 0.57 39.30 3.46
3243 4631 1.223763 GGAACATCCCGGTCCTTCC 59.776 63.158 0.00 0.99 0.00 3.46
3244 4632 1.223763 GAACATCCCGGTCCTTCCC 59.776 63.158 0.00 0.00 0.00 3.97
3245 4633 1.229853 AACATCCCGGTCCTTCCCT 60.230 57.895 0.00 0.00 0.00 4.20
3246 4634 0.845102 AACATCCCGGTCCTTCCCTT 60.845 55.000 0.00 0.00 0.00 3.95
3247 4635 1.272554 ACATCCCGGTCCTTCCCTTC 61.273 60.000 0.00 0.00 0.00 3.46
3248 4636 0.983378 CATCCCGGTCCTTCCCTTCT 60.983 60.000 0.00 0.00 0.00 2.85
3249 4637 0.640495 ATCCCGGTCCTTCCCTTCTA 59.360 55.000 0.00 0.00 0.00 2.10
3250 4638 0.325016 TCCCGGTCCTTCCCTTCTAC 60.325 60.000 0.00 0.00 0.00 2.59
3251 4639 0.325390 CCCGGTCCTTCCCTTCTACT 60.325 60.000 0.00 0.00 0.00 2.57
3252 4640 1.063417 CCCGGTCCTTCCCTTCTACTA 60.063 57.143 0.00 0.00 0.00 1.82
3253 4641 2.308690 CCGGTCCTTCCCTTCTACTAG 58.691 57.143 0.00 0.00 0.00 2.57
3254 4642 2.357986 CCGGTCCTTCCCTTCTACTAGT 60.358 54.545 0.00 0.00 0.00 2.57
3255 4643 3.117738 CCGGTCCTTCCCTTCTACTAGTA 60.118 52.174 1.89 1.89 0.00 1.82
3256 4644 4.136051 CGGTCCTTCCCTTCTACTAGTAG 58.864 52.174 21.87 21.87 34.56 2.57
3298 4686 3.452755 TGGTTGTACATATGCTCCTCG 57.547 47.619 1.58 0.00 0.00 4.63
3400 4832 5.967088 CGGTAAAAATAAGGACGCCAATAAC 59.033 40.000 0.00 0.00 0.00 1.89
3408 4840 0.094730 GACGCCAATAACGAGCACAC 59.905 55.000 0.00 0.00 0.00 3.82
3411 4843 1.906994 GCCAATAACGAGCACACGCA 61.907 55.000 0.00 0.00 42.27 5.24
3431 4863 1.512926 AACTTAGCGTGGCTCAGTTG 58.487 50.000 14.40 0.00 46.82 3.16
3433 4865 0.320771 CTTAGCGTGGCTCAGTTGGT 60.321 55.000 0.00 0.00 40.44 3.67
3444 4876 4.338118 TGGCTCAGTTGGTTAAGTTTCTTG 59.662 41.667 0.00 0.00 0.00 3.02
3454 4886 6.126409 TGGTTAAGTTTCTTGTGATGGAACT 58.874 36.000 0.00 0.00 0.00 3.01
3458 4890 8.496751 GTTAAGTTTCTTGTGATGGAACTAGTC 58.503 37.037 0.00 0.00 0.00 2.59
3467 4899 2.369654 GGAACTAGTCCACCGGGTT 58.630 57.895 6.32 0.00 46.97 4.11
3471 4903 3.706086 GGAACTAGTCCACCGGGTTTATA 59.294 47.826 6.32 0.00 46.97 0.98
3474 4906 4.812653 ACTAGTCCACCGGGTTTATATCT 58.187 43.478 6.32 0.00 34.93 1.98
3486 4918 6.488683 CCGGGTTTATATCTTAGATTTGGCAA 59.511 38.462 0.00 0.00 0.00 4.52
3491 4923 9.683069 GTTTATATCTTAGATTTGGCAATGGTG 57.317 33.333 0.00 0.00 0.00 4.17
3518 4950 9.113876 CTCGCGTTTTTCTGAATTTATTTTAGT 57.886 29.630 5.77 0.00 0.00 2.24
3535 4967 9.588774 TTATTTTAGTCTTTTCGACAATGTTCG 57.411 29.630 0.00 0.00 45.32 3.95
3540 4972 5.064198 AGTCTTTTCGACAATGTTCGTTCAA 59.936 36.000 0.00 0.00 45.32 2.69
3544 4976 2.482336 TCGACAATGTTCGTTCAATGGG 59.518 45.455 0.00 0.00 40.07 4.00
3547 4979 3.750371 ACAATGTTCGTTCAATGGGAGA 58.250 40.909 0.00 0.00 0.00 3.71
3555 4987 3.578716 TCGTTCAATGGGAGAAGAAGTCT 59.421 43.478 0.00 0.00 40.25 3.24
3573 5005 0.728129 CTCGTCGACTACAAAGCGCA 60.728 55.000 14.70 0.00 0.00 6.09
3575 5007 0.023732 CGTCGACTACAAAGCGCATG 59.976 55.000 14.70 11.29 0.00 4.06
3578 5010 0.095245 CGACTACAAAGCGCATGTGG 59.905 55.000 23.91 22.97 35.61 4.17
3580 5012 0.874390 ACTACAAAGCGCATGTGGTG 59.126 50.000 26.37 18.21 40.43 4.17
3584 5016 0.311790 CAAAGCGCATGTGGTGACTT 59.688 50.000 12.40 1.30 0.00 3.01
3594 5026 3.469008 TGTGGTGACTTCGTCAATCTT 57.531 42.857 0.00 0.00 44.49 2.40
3602 5034 9.878667 TGGTGACTTCGTCAATCTTAAAATATA 57.121 29.630 0.00 0.00 44.49 0.86
3608 5040 9.318041 CTTCGTCAATCTTAAAATATAATGCCG 57.682 33.333 0.00 0.00 0.00 5.69
3609 5041 8.596271 TCGTCAATCTTAAAATATAATGCCGA 57.404 30.769 0.00 0.00 0.00 5.54
3621 5053 7.993821 AATATAATGCCGACTCATTATCTCG 57.006 36.000 15.67 0.00 44.22 4.04
3625 5057 2.688446 TGCCGACTCATTATCTCGAAGT 59.312 45.455 0.00 0.00 0.00 3.01
3630 5062 4.439449 CGACTCATTATCTCGAAGTTGCTC 59.561 45.833 0.00 0.00 0.00 4.26
3634 5066 7.144661 ACTCATTATCTCGAAGTTGCTCATAG 58.855 38.462 0.00 0.00 0.00 2.23
3635 5067 6.450545 TCATTATCTCGAAGTTGCTCATAGG 58.549 40.000 0.00 0.00 0.00 2.57
3636 5068 3.742433 ATCTCGAAGTTGCTCATAGGG 57.258 47.619 0.00 0.00 0.00 3.53
3640 5072 4.520874 TCTCGAAGTTGCTCATAGGGATAG 59.479 45.833 0.00 0.00 0.00 2.08
3642 5074 4.278669 TCGAAGTTGCTCATAGGGATAGAC 59.721 45.833 0.00 0.00 0.00 2.59
3644 5076 5.563867 CGAAGTTGCTCATAGGGATAGACTC 60.564 48.000 0.00 0.00 0.00 3.36
3646 5078 4.832266 AGTTGCTCATAGGGATAGACTCTG 59.168 45.833 0.00 0.00 0.00 3.35
3648 5080 4.661222 TGCTCATAGGGATAGACTCTGAG 58.339 47.826 2.45 2.45 40.28 3.35
3650 5082 4.458989 GCTCATAGGGATAGACTCTGAGTG 59.541 50.000 16.28 0.00 39.79 3.51
3653 5085 2.383855 AGGGATAGACTCTGAGTGTGC 58.616 52.381 16.28 7.95 0.00 4.57
3659 5091 1.151668 GACTCTGAGTGTGCGCATTT 58.848 50.000 15.91 1.27 0.00 2.32
3663 5095 4.697514 ACTCTGAGTGTGCGCATTTATAT 58.302 39.130 15.91 0.00 0.00 0.86
3668 5100 7.826690 TCTGAGTGTGCGCATTTATATAGATA 58.173 34.615 15.91 0.00 0.00 1.98
3735 5167 4.737765 TGTTAAAGAAAACAAGCGCACATC 59.262 37.500 11.47 0.00 36.45 3.06
3785 5217 2.298300 GAAGTTTCATGCACGTGAACG 58.702 47.619 22.23 0.00 46.33 3.95
3789 5221 0.865111 TTCATGCACGTGAACGAAGG 59.135 50.000 22.23 0.24 43.02 3.46
3793 5225 0.250124 TGCACGTGAACGAAGGGAAT 60.250 50.000 22.23 0.00 43.02 3.01
3800 5232 3.368116 CGTGAACGAAGGGAATCTAGGTT 60.368 47.826 0.00 0.00 43.02 3.50
3801 5233 4.576879 GTGAACGAAGGGAATCTAGGTTT 58.423 43.478 0.00 0.00 0.00 3.27
3802 5234 5.001874 GTGAACGAAGGGAATCTAGGTTTT 58.998 41.667 0.00 0.00 0.00 2.43
3803 5235 5.472478 GTGAACGAAGGGAATCTAGGTTTTT 59.528 40.000 0.00 0.00 0.00 1.94
3824 5256 5.346181 TTTTTGAGGGAACGACCAAATTT 57.654 34.783 0.00 0.00 41.20 1.82
3825 5257 6.466885 TTTTTGAGGGAACGACCAAATTTA 57.533 33.333 0.00 0.00 41.20 1.40
3826 5258 6.658188 TTTTGAGGGAACGACCAAATTTAT 57.342 33.333 0.00 0.00 41.20 1.40
3827 5259 6.658188 TTTGAGGGAACGACCAAATTTATT 57.342 33.333 0.00 0.00 41.20 1.40
3828 5260 5.890424 TGAGGGAACGACCAAATTTATTC 57.110 39.130 0.00 0.00 41.20 1.75
3829 5261 5.317808 TGAGGGAACGACCAAATTTATTCA 58.682 37.500 0.00 0.00 41.20 2.57
3830 5262 5.949354 TGAGGGAACGACCAAATTTATTCAT 59.051 36.000 0.00 0.00 41.20 2.57
3831 5263 6.094881 TGAGGGAACGACCAAATTTATTCATC 59.905 38.462 0.00 0.00 41.20 2.92
3832 5264 5.949354 AGGGAACGACCAAATTTATTCATCA 59.051 36.000 0.00 0.00 41.20 3.07
3833 5265 6.435904 AGGGAACGACCAAATTTATTCATCAA 59.564 34.615 0.00 0.00 41.20 2.57
3834 5266 7.039363 AGGGAACGACCAAATTTATTCATCAAA 60.039 33.333 0.00 0.00 41.20 2.69
3835 5267 7.600752 GGGAACGACCAAATTTATTCATCAAAA 59.399 33.333 0.00 0.00 41.20 2.44
3836 5268 8.647226 GGAACGACCAAATTTATTCATCAAAAG 58.353 33.333 0.00 0.00 38.79 2.27
3837 5269 7.581011 ACGACCAAATTTATTCATCAAAAGC 57.419 32.000 0.00 0.00 0.00 3.51
3838 5270 6.589907 ACGACCAAATTTATTCATCAAAAGCC 59.410 34.615 0.00 0.00 0.00 4.35
3839 5271 6.589523 CGACCAAATTTATTCATCAAAAGCCA 59.410 34.615 0.00 0.00 0.00 4.75
3840 5272 7.411804 CGACCAAATTTATTCATCAAAAGCCAC 60.412 37.037 0.00 0.00 0.00 5.01
3841 5273 7.222872 ACCAAATTTATTCATCAAAAGCCACA 58.777 30.769 0.00 0.00 0.00 4.17
3842 5274 7.718753 ACCAAATTTATTCATCAAAAGCCACAA 59.281 29.630 0.00 0.00 0.00 3.33
3843 5275 8.732531 CCAAATTTATTCATCAAAAGCCACAAT 58.267 29.630 0.00 0.00 0.00 2.71
3862 5294 7.389803 CACAATAAGTGGGATACAATGTTGA 57.610 36.000 0.00 0.00 44.69 3.18
3863 5295 7.999679 CACAATAAGTGGGATACAATGTTGAT 58.000 34.615 0.00 0.00 44.69 2.57
3864 5296 8.131100 CACAATAAGTGGGATACAATGTTGATC 58.869 37.037 0.00 0.00 44.69 2.92
3865 5297 7.833682 ACAATAAGTGGGATACAATGTTGATCA 59.166 33.333 0.00 0.00 39.74 2.92
3866 5298 8.853126 CAATAAGTGGGATACAATGTTGATCAT 58.147 33.333 0.00 0.00 38.57 2.45
3867 5299 6.704289 AAGTGGGATACAATGTTGATCATG 57.296 37.500 0.00 0.00 36.81 3.07
3868 5300 6.005066 AGTGGGATACAATGTTGATCATGA 57.995 37.500 0.00 0.00 36.81 3.07
3869 5301 6.060136 AGTGGGATACAATGTTGATCATGAG 58.940 40.000 0.09 0.00 36.81 2.90
3870 5302 5.240183 GTGGGATACAATGTTGATCATGAGG 59.760 44.000 0.09 0.00 36.81 3.86
3871 5303 5.103982 TGGGATACAATGTTGATCATGAGGT 60.104 40.000 0.09 0.00 36.81 3.85
3872 5304 5.829924 GGGATACAATGTTGATCATGAGGTT 59.170 40.000 0.09 0.00 36.81 3.50
3873 5305 6.238842 GGGATACAATGTTGATCATGAGGTTG 60.239 42.308 0.09 1.14 36.81 3.77
3874 5306 6.238842 GGATACAATGTTGATCATGAGGTTGG 60.239 42.308 0.09 0.00 36.81 3.77
3875 5307 4.410099 ACAATGTTGATCATGAGGTTGGT 58.590 39.130 0.09 0.00 36.81 3.67
3876 5308 4.460382 ACAATGTTGATCATGAGGTTGGTC 59.540 41.667 0.09 0.00 36.81 4.02
3877 5309 3.786368 TGTTGATCATGAGGTTGGTCA 57.214 42.857 0.09 0.00 34.97 4.02
3878 5310 4.097551 TGTTGATCATGAGGTTGGTCAA 57.902 40.909 0.09 2.19 42.84 3.18
3879 5311 4.074259 TGTTGATCATGAGGTTGGTCAAG 58.926 43.478 7.29 0.00 44.98 3.02
3880 5312 2.715046 TGATCATGAGGTTGGTCAAGC 58.285 47.619 0.09 4.89 33.87 4.01
3881 5313 2.019984 GATCATGAGGTTGGTCAAGCC 58.980 52.381 0.09 2.63 39.46 4.35
3882 5314 6.580936 TTGATCATGAGGTTGGTCAAGCCA 62.581 45.833 0.09 7.61 40.80 4.75
3891 5323 2.022764 TGGTCAAGCCATACATGACG 57.977 50.000 0.00 0.00 45.80 4.35
3892 5324 1.552792 TGGTCAAGCCATACATGACGA 59.447 47.619 0.00 0.00 45.80 4.20
3893 5325 1.933853 GGTCAAGCCATACATGACGAC 59.066 52.381 0.00 0.00 45.80 4.34
3894 5326 1.933853 GTCAAGCCATACATGACGACC 59.066 52.381 0.00 0.00 37.26 4.79
3895 5327 1.134521 TCAAGCCATACATGACGACCC 60.135 52.381 0.00 0.00 0.00 4.46
3896 5328 1.134401 CAAGCCATACATGACGACCCT 60.134 52.381 0.00 0.00 0.00 4.34
3897 5329 0.465705 AGCCATACATGACGACCCTG 59.534 55.000 0.00 0.00 0.00 4.45
3898 5330 1.160329 GCCATACATGACGACCCTGC 61.160 60.000 0.00 0.00 0.00 4.85
3899 5331 0.465705 CCATACATGACGACCCTGCT 59.534 55.000 0.00 0.00 0.00 4.24
3900 5332 1.575244 CATACATGACGACCCTGCTG 58.425 55.000 0.00 0.00 0.00 4.41
3901 5333 1.136891 CATACATGACGACCCTGCTGA 59.863 52.381 0.00 0.00 0.00 4.26
3902 5334 1.262417 TACATGACGACCCTGCTGAA 58.738 50.000 0.00 0.00 0.00 3.02
3903 5335 0.036952 ACATGACGACCCTGCTGAAG 60.037 55.000 0.00 0.00 0.00 3.02
3904 5336 1.078848 ATGACGACCCTGCTGAAGC 60.079 57.895 0.00 0.00 42.50 3.86
3905 5337 2.435059 GACGACCCTGCTGAAGCC 60.435 66.667 0.00 0.00 41.18 4.35
3906 5338 2.925170 ACGACCCTGCTGAAGCCT 60.925 61.111 0.00 0.00 41.18 4.58
3907 5339 1.605058 GACGACCCTGCTGAAGCCTA 61.605 60.000 0.00 0.00 41.18 3.93
3908 5340 1.153549 CGACCCTGCTGAAGCCTAC 60.154 63.158 0.00 0.00 41.18 3.18
3909 5341 1.153549 GACCCTGCTGAAGCCTACG 60.154 63.158 0.00 0.00 41.18 3.51
3910 5342 1.605058 GACCCTGCTGAAGCCTACGA 61.605 60.000 0.00 0.00 41.18 3.43
3911 5343 1.142748 CCCTGCTGAAGCCTACGAG 59.857 63.158 0.00 0.00 41.18 4.18
3912 5344 1.323271 CCCTGCTGAAGCCTACGAGA 61.323 60.000 0.00 0.00 41.18 4.04
3913 5345 0.532573 CCTGCTGAAGCCTACGAGAA 59.467 55.000 0.00 0.00 41.18 2.87
3914 5346 1.137872 CCTGCTGAAGCCTACGAGAAT 59.862 52.381 0.00 0.00 41.18 2.40
3915 5347 2.200067 CTGCTGAAGCCTACGAGAATG 58.800 52.381 0.00 0.00 41.18 2.67
3916 5348 1.550524 TGCTGAAGCCTACGAGAATGT 59.449 47.619 0.00 0.00 41.18 2.71
3917 5349 2.028112 TGCTGAAGCCTACGAGAATGTT 60.028 45.455 0.00 0.00 41.18 2.71
3918 5350 3.003480 GCTGAAGCCTACGAGAATGTTT 58.997 45.455 0.00 0.00 34.31 2.83
3919 5351 3.181516 GCTGAAGCCTACGAGAATGTTTG 60.182 47.826 0.00 0.00 34.31 2.93
3920 5352 3.334691 TGAAGCCTACGAGAATGTTTGG 58.665 45.455 0.00 0.00 0.00 3.28
3921 5353 1.739067 AGCCTACGAGAATGTTTGGC 58.261 50.000 0.00 0.00 39.20 4.52
3922 5354 1.279271 AGCCTACGAGAATGTTTGGCT 59.721 47.619 0.00 0.00 42.09 4.75
3923 5355 2.500098 AGCCTACGAGAATGTTTGGCTA 59.500 45.455 0.00 0.00 43.75 3.93
3924 5356 3.055385 AGCCTACGAGAATGTTTGGCTAA 60.055 43.478 0.00 0.00 43.75 3.09
3925 5357 3.687698 GCCTACGAGAATGTTTGGCTAAA 59.312 43.478 0.00 0.00 37.32 1.85
3926 5358 4.201822 GCCTACGAGAATGTTTGGCTAAAG 60.202 45.833 0.00 0.00 37.32 1.85
3927 5359 3.831715 ACGAGAATGTTTGGCTAAAGC 57.168 42.857 0.00 0.00 41.14 3.51
3928 5360 3.146066 ACGAGAATGTTTGGCTAAAGCA 58.854 40.909 4.07 0.00 44.36 3.91
3929 5361 3.758554 ACGAGAATGTTTGGCTAAAGCAT 59.241 39.130 4.07 0.45 44.36 3.79
3930 5362 4.100529 CGAGAATGTTTGGCTAAAGCATG 58.899 43.478 4.07 0.00 44.36 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.889186 GAGCACCATTGAACCACGGT 60.889 55.000 0.00 0.00 0.00 4.83
1 2 0.606401 AGAGCACCATTGAACCACGG 60.606 55.000 0.00 0.00 0.00 4.94
2 3 1.197721 GAAGAGCACCATTGAACCACG 59.802 52.381 0.00 0.00 0.00 4.94
3 4 1.197721 CGAAGAGCACCATTGAACCAC 59.802 52.381 0.00 0.00 0.00 4.16
4 5 1.071542 TCGAAGAGCACCATTGAACCA 59.928 47.619 0.00 0.00 0.00 3.67
5 6 1.808411 TCGAAGAGCACCATTGAACC 58.192 50.000 0.00 0.00 0.00 3.62
22 23 4.023128 CGAAACTTGAGACTCGATACTCG 58.977 47.826 12.18 0.35 42.10 4.18
23 24 4.344448 CCGAAACTTGAGACTCGATACTC 58.656 47.826 10.70 10.70 33.13 2.59
24 25 3.128938 CCCGAAACTTGAGACTCGATACT 59.871 47.826 0.00 0.00 33.13 2.12
25 26 3.119566 ACCCGAAACTTGAGACTCGATAC 60.120 47.826 0.00 0.00 33.13 2.24
26 27 3.087031 ACCCGAAACTTGAGACTCGATA 58.913 45.455 0.00 0.00 33.13 2.92
27 28 1.893801 ACCCGAAACTTGAGACTCGAT 59.106 47.619 0.00 0.00 33.13 3.59
28 29 1.325355 ACCCGAAACTTGAGACTCGA 58.675 50.000 0.00 0.00 33.13 4.04
29 30 1.792949 CAACCCGAAACTTGAGACTCG 59.207 52.381 0.00 0.00 0.00 4.18
30 31 2.835027 ACAACCCGAAACTTGAGACTC 58.165 47.619 0.00 0.00 0.00 3.36
31 32 4.411256 TTACAACCCGAAACTTGAGACT 57.589 40.909 0.00 0.00 0.00 3.24
32 33 4.260907 GGTTTACAACCCGAAACTTGAGAC 60.261 45.833 0.00 0.00 46.12 3.36
33 34 3.878699 GGTTTACAACCCGAAACTTGAGA 59.121 43.478 0.00 0.00 46.12 3.27
34 35 4.219143 GGTTTACAACCCGAAACTTGAG 57.781 45.455 0.00 0.00 46.12 3.02
46 47 5.678955 AGATCAGACCTAGGGTTTACAAC 57.321 43.478 14.81 0.00 35.25 3.32
47 48 6.271391 TGAAAGATCAGACCTAGGGTTTACAA 59.729 38.462 14.81 0.00 35.25 2.41
48 49 5.783360 TGAAAGATCAGACCTAGGGTTTACA 59.217 40.000 14.81 0.00 35.25 2.41
49 50 6.295719 TGAAAGATCAGACCTAGGGTTTAC 57.704 41.667 14.81 0.00 35.25 2.01
50 51 6.443849 ACATGAAAGATCAGACCTAGGGTTTA 59.556 38.462 14.81 0.00 39.39 2.01
51 52 5.251700 ACATGAAAGATCAGACCTAGGGTTT 59.748 40.000 14.81 0.95 39.39 3.27
52 53 4.785376 ACATGAAAGATCAGACCTAGGGTT 59.215 41.667 14.81 0.00 39.39 4.11
53 54 4.366267 ACATGAAAGATCAGACCTAGGGT 58.634 43.478 14.81 0.00 39.39 4.34
54 55 5.365021 AACATGAAAGATCAGACCTAGGG 57.635 43.478 14.81 0.00 39.39 3.53
55 56 7.278868 GTGTAAACATGAAAGATCAGACCTAGG 59.721 40.741 7.41 7.41 39.39 3.02
56 57 8.037758 AGTGTAAACATGAAAGATCAGACCTAG 58.962 37.037 0.00 0.00 39.39 3.02
57 58 7.907389 AGTGTAAACATGAAAGATCAGACCTA 58.093 34.615 0.00 0.00 39.39 3.08
58 59 6.773638 AGTGTAAACATGAAAGATCAGACCT 58.226 36.000 0.00 0.00 39.39 3.85
59 60 7.440523 AAGTGTAAACATGAAAGATCAGACC 57.559 36.000 0.00 0.00 39.39 3.85
60 61 8.345565 ACAAAGTGTAAACATGAAAGATCAGAC 58.654 33.333 0.00 0.00 39.39 3.51
61 62 8.450578 ACAAAGTGTAAACATGAAAGATCAGA 57.549 30.769 0.00 0.00 39.39 3.27
62 63 9.520204 AAACAAAGTGTAAACATGAAAGATCAG 57.480 29.630 0.00 0.00 39.39 2.90
63 64 9.868277 AAAACAAAGTGTAAACATGAAAGATCA 57.132 25.926 0.00 0.00 40.57 2.92
65 66 9.313118 GGAAAACAAAGTGTAAACATGAAAGAT 57.687 29.630 0.00 0.00 0.00 2.40
66 67 8.527810 AGGAAAACAAAGTGTAAACATGAAAGA 58.472 29.630 0.00 0.00 0.00 2.52
67 68 8.702163 AGGAAAACAAAGTGTAAACATGAAAG 57.298 30.769 0.00 0.00 0.00 2.62
68 69 8.930760 CAAGGAAAACAAAGTGTAAACATGAAA 58.069 29.630 0.00 0.00 0.00 2.69
69 70 8.091449 ACAAGGAAAACAAAGTGTAAACATGAA 58.909 29.630 0.00 0.00 0.00 2.57
70 71 7.607250 ACAAGGAAAACAAAGTGTAAACATGA 58.393 30.769 0.00 0.00 0.00 3.07
71 72 7.826260 ACAAGGAAAACAAAGTGTAAACATG 57.174 32.000 0.00 0.00 0.00 3.21
72 73 8.091449 TCAACAAGGAAAACAAAGTGTAAACAT 58.909 29.630 0.00 0.00 0.00 2.71
73 74 7.434492 TCAACAAGGAAAACAAAGTGTAAACA 58.566 30.769 0.00 0.00 0.00 2.83
74 75 7.876896 TCAACAAGGAAAACAAAGTGTAAAC 57.123 32.000 0.00 0.00 0.00 2.01
99 100 1.065564 AGCAATCTCCAAGCAGACTCC 60.066 52.381 0.00 0.00 0.00 3.85
102 103 1.135460 GCAAGCAATCTCCAAGCAGAC 60.135 52.381 0.00 0.00 0.00 3.51
104 105 0.885879 TGCAAGCAATCTCCAAGCAG 59.114 50.000 0.00 0.00 0.00 4.24
119 120 0.183492 ACCTTGAAGAGCAGGTGCAA 59.817 50.000 4.48 0.00 45.16 4.08
120 121 0.535780 CACCTTGAAGAGCAGGTGCA 60.536 55.000 5.78 0.00 44.11 4.57
147 148 7.861872 GGATCTAACTACGAAAGGTCAGATTAC 59.138 40.741 0.00 0.00 0.00 1.89
164 165 1.112113 ATGCGTCACCGGATCTAACT 58.888 50.000 9.46 0.00 41.69 2.24
185 186 6.705863 ATCAATGCATCTAAGAAGGGAAAC 57.294 37.500 0.00 0.00 0.00 2.78
200 201 7.712205 TGATAGAGATTCTTCGAAATCAATGCA 59.288 33.333 11.42 0.00 37.98 3.96
211 212 9.553418 CACACATACTATGATAGAGATTCTTCG 57.447 37.037 6.45 0.00 0.00 3.79
231 232 4.191544 CCATTATCCTTGACGACACACAT 58.808 43.478 0.00 0.00 0.00 3.21
239 240 8.765219 CAATAACTTCTACCATTATCCTTGACG 58.235 37.037 0.00 0.00 0.00 4.35
290 291 5.673029 CAAGCACAAAAAGAATTGCTAAGC 58.327 37.500 0.00 0.00 44.57 3.09
368 379 5.914635 CCAACAGACACACATAAATCACAAC 59.085 40.000 0.00 0.00 0.00 3.32
380 391 1.459450 ACCAACACCAACAGACACAC 58.541 50.000 0.00 0.00 0.00 3.82
386 397 1.543802 ACACACAACCAACACCAACAG 59.456 47.619 0.00 0.00 0.00 3.16
406 417 7.316393 AGTAGGCTAATGCATAGTTTGGATA 57.684 36.000 0.00 0.00 35.87 2.59
421 432 6.707290 ACAACATGAACACATAGTAGGCTAA 58.293 36.000 0.00 0.00 0.00 3.09
422 433 6.294361 ACAACATGAACACATAGTAGGCTA 57.706 37.500 0.00 0.00 0.00 3.93
456 467 7.480542 CGATTTGACTAATTCAAGTTTTACCCG 59.519 37.037 0.00 0.00 45.22 5.28
469 480 2.942376 TGATGCCGCGATTTGACTAATT 59.058 40.909 8.23 0.00 0.00 1.40
474 485 2.287915 AGTAATGATGCCGCGATTTGAC 59.712 45.455 8.23 0.00 0.00 3.18
483 494 0.809636 TGCGGACAGTAATGATGCCG 60.810 55.000 15.53 15.53 39.07 5.69
495 506 7.101054 AGTAGTTAATCTTTGTAATGCGGACA 58.899 34.615 0.00 0.00 0.00 4.02
523 535 1.927487 TGGTTAGGCTTCGGTCTACA 58.073 50.000 0.00 0.00 31.17 2.74
542 554 5.756833 AGAACTGAAAATAGAACCGTCGTTT 59.243 36.000 0.00 0.00 30.30 3.60
548 560 7.275123 GGTACACTAGAACTGAAAATAGAACCG 59.725 40.741 0.00 0.00 0.00 4.44
570 582 7.553334 TGGTCAGTGATATTTTGTCTAGGTAC 58.447 38.462 0.00 0.00 0.00 3.34
578 590 6.207417 CCAGAACTTGGTCAGTGATATTTTGT 59.793 38.462 0.00 0.00 42.41 2.83
660 681 4.332543 CAGTATTTGCGTCTCCAATTGCTA 59.667 41.667 0.00 0.00 0.00 3.49
668 689 3.786635 ACAGATCAGTATTTGCGTCTCC 58.213 45.455 0.00 0.00 0.00 3.71
670 691 3.195610 TGGACAGATCAGTATTTGCGTCT 59.804 43.478 0.00 0.00 0.00 4.18
735 756 3.356290 GAGCTACCCATTTGTGTGGAAT 58.644 45.455 0.00 0.00 42.02 3.01
783 804 7.620880 AGAAGAGTTATGTGCTTGTATGGTAA 58.379 34.615 0.00 0.00 0.00 2.85
785 806 6.054860 AGAAGAGTTATGTGCTTGTATGGT 57.945 37.500 0.00 0.00 0.00 3.55
790 811 5.049129 GCTTGAAGAAGAGTTATGTGCTTGT 60.049 40.000 0.00 0.00 0.00 3.16
802 823 2.224621 TGGGTGGAAGCTTGAAGAAGAG 60.225 50.000 2.10 0.00 0.00 2.85
806 830 0.250901 GCTGGGTGGAAGCTTGAAGA 60.251 55.000 2.10 0.00 37.69 2.87
848 1520 1.329906 GTTATACAGCAGCAGCAGCAG 59.670 52.381 12.92 6.60 45.49 4.24
849 1521 1.372582 GTTATACAGCAGCAGCAGCA 58.627 50.000 12.92 0.00 45.49 4.41
850 1522 0.659957 GGTTATACAGCAGCAGCAGC 59.340 55.000 3.17 0.46 45.49 5.25
897 1569 0.042581 TGTAGGATGCTGAGGGGTCA 59.957 55.000 0.00 0.00 0.00 4.02
972 1646 6.264744 ACGTAGCTAAGGATGCTATTACTCAA 59.735 38.462 11.48 0.00 43.66 3.02
1226 2044 2.104331 CCGACACGCCGCTCTTAT 59.896 61.111 0.00 0.00 0.00 1.73
1244 2062 2.825836 GGGACATGGCCTTCGCTG 60.826 66.667 19.55 0.00 34.44 5.18
1371 2193 0.108992 GGATGAACGCCGTCTGTGTA 60.109 55.000 0.00 0.00 36.45 2.90
1440 2262 0.460987 CAATGGTGTCGAGGAGCCTC 60.461 60.000 6.46 6.46 39.55 4.70
1456 2278 0.821517 TCTATGACGTCGGCACCAAT 59.178 50.000 0.91 0.00 0.00 3.16
1479 2301 3.311110 TCGGAGAACGGCAAGCCT 61.311 61.111 9.73 0.00 44.45 4.58
1665 2487 2.749044 CTGGCTGCAGCGGTGAAT 60.749 61.111 31.19 0.00 43.26 2.57
1695 2517 4.931661 AGAAGACAACTGTTTACCTCGA 57.068 40.909 0.00 0.00 0.00 4.04
1738 2563 4.790651 TGCATGTTACGATTTTTATGCACG 59.209 37.500 0.00 0.00 43.95 5.34
1739 2564 5.275881 GCTGCATGTTACGATTTTTATGCAC 60.276 40.000 0.00 0.00 43.95 4.57
1949 2937 0.109086 ACCAGCTCGATGTCGTTCTG 60.109 55.000 14.66 14.66 40.80 3.02
1970 2958 3.362831 ACTGTTTCGCGTGTTATTAGACG 59.637 43.478 5.77 0.00 43.29 4.18
2016 3004 7.768807 TTATATTGGTTTGGTAGTTTGTGCT 57.231 32.000 0.00 0.00 0.00 4.40
2047 3035 6.316390 CGACCTTATTGCAAGAGGATTTACTT 59.684 38.462 28.78 11.70 34.61 2.24
2065 3053 8.414778 TGCCTTTTTATTTTTCTTTCGACCTTA 58.585 29.630 0.00 0.00 0.00 2.69
2114 3102 2.950781 TCATGCTTGGTGTTGGGTTAA 58.049 42.857 0.00 0.00 0.00 2.01
2151 3140 4.039973 CCCTTGGTTGTAGTGTGTTAGAGA 59.960 45.833 0.00 0.00 0.00 3.10
2153 3142 3.712733 ACCCTTGGTTGTAGTGTGTTAGA 59.287 43.478 0.00 0.00 27.29 2.10
2173 3162 1.104630 CTCCGGTCCTCTTCTGTACC 58.895 60.000 0.00 0.00 0.00 3.34
2224 3218 2.384828 TGTGAGTACCAGGCATACGAT 58.615 47.619 0.00 0.00 0.00 3.73
2264 3643 6.149640 AGCTATTGTGATCTCATTCATCATGC 59.850 38.462 0.00 0.00 32.86 4.06
2412 3791 8.570096 TGTGTAATAGTATGTGATTAAGACGC 57.430 34.615 0.00 0.00 0.00 5.19
2438 3817 5.948162 TCCTGTAACTCCGTTGATACTTACT 59.052 40.000 0.00 0.00 0.00 2.24
2590 3970 3.685139 TCTTGGAGGACAGTCACAATC 57.315 47.619 2.17 0.00 0.00 2.67
2661 4041 2.490115 GTCGATATGCCAAACCCAACAA 59.510 45.455 0.00 0.00 0.00 2.83
2813 4193 3.402628 ACCTGTATGCATCCCGTATTC 57.597 47.619 0.19 0.00 0.00 1.75
2814 4194 3.476552 CAACCTGTATGCATCCCGTATT 58.523 45.455 0.19 0.00 0.00 1.89
2815 4195 2.810400 GCAACCTGTATGCATCCCGTAT 60.810 50.000 0.19 0.00 43.29 3.06
2816 4196 1.474320 GCAACCTGTATGCATCCCGTA 60.474 52.381 0.19 0.00 43.29 4.02
2817 4197 0.748005 GCAACCTGTATGCATCCCGT 60.748 55.000 0.19 0.00 43.29 5.28
2818 4198 2.024918 GCAACCTGTATGCATCCCG 58.975 57.895 0.19 0.00 43.29 5.14
2873 4253 3.237268 TCACCCAACTGCTTTACCATT 57.763 42.857 0.00 0.00 0.00 3.16
2928 4308 1.961394 CAGGCTCCTGGCGTATACTTA 59.039 52.381 8.03 0.00 44.18 2.24
3112 4493 3.008266 TCTGAAAGTGCATCCAGTGATGA 59.992 43.478 6.73 0.00 42.63 2.92
3131 4512 9.102757 AGTTGTAGTCTTATGTGCATAATTCTG 57.897 33.333 5.25 0.00 33.29 3.02
3194 4582 2.957491 TTATTTGCCAATCTTGCCCG 57.043 45.000 0.00 0.00 0.00 6.13
3212 4600 4.383770 CGGGATGTTCCAACCACTACTATT 60.384 45.833 0.00 0.00 38.64 1.73
3218 4606 1.378762 CCGGGATGTTCCAACCACT 59.621 57.895 0.00 0.00 38.64 4.00
3224 4612 1.559065 GGAAGGACCGGGATGTTCCA 61.559 60.000 17.59 0.00 38.64 3.53
3226 4614 1.223763 GGGAAGGACCGGGATGTTC 59.776 63.158 6.32 2.81 40.11 3.18
3229 4617 0.983378 AGAAGGGAAGGACCGGGATG 60.983 60.000 6.32 0.00 40.11 3.51
3230 4618 0.640495 TAGAAGGGAAGGACCGGGAT 59.360 55.000 6.32 0.00 40.11 3.85
3231 4619 0.325016 GTAGAAGGGAAGGACCGGGA 60.325 60.000 6.32 0.00 40.11 5.14
3232 4620 0.325390 AGTAGAAGGGAAGGACCGGG 60.325 60.000 6.32 0.00 40.11 5.73
3233 4621 2.308690 CTAGTAGAAGGGAAGGACCGG 58.691 57.143 0.00 0.00 40.11 5.28
3234 4622 3.015675 ACTAGTAGAAGGGAAGGACCG 57.984 52.381 3.59 0.00 40.11 4.79
3235 4623 3.890756 GCTACTAGTAGAAGGGAAGGACC 59.109 52.174 30.09 6.99 35.21 4.46
3236 4624 4.795469 AGCTACTAGTAGAAGGGAAGGAC 58.205 47.826 30.09 10.62 35.21 3.85
3237 4625 5.469210 AAGCTACTAGTAGAAGGGAAGGA 57.531 43.478 30.09 0.00 35.21 3.36
3238 4626 5.771165 CCTAAGCTACTAGTAGAAGGGAAGG 59.229 48.000 30.09 20.83 35.21 3.46
3239 4627 6.367161 ACCTAAGCTACTAGTAGAAGGGAAG 58.633 44.000 30.35 19.81 35.34 3.46
3240 4628 6.160105 AGACCTAAGCTACTAGTAGAAGGGAA 59.840 42.308 30.35 14.50 35.34 3.97
3241 4629 5.671276 AGACCTAAGCTACTAGTAGAAGGGA 59.329 44.000 30.35 15.36 35.34 4.20
3242 4630 5.944135 AGACCTAAGCTACTAGTAGAAGGG 58.056 45.833 30.35 25.48 35.34 3.95
3243 4631 8.977267 TTTAGACCTAAGCTACTAGTAGAAGG 57.023 38.462 30.09 28.81 36.26 3.46
3255 4643 9.755122 ACCATTTTTCTAATTTAGACCTAAGCT 57.245 29.630 5.62 0.00 33.84 3.74
3278 4666 2.764010 ACGAGGAGCATATGTACAACCA 59.236 45.455 0.00 0.00 0.00 3.67
3353 4785 8.521176 ACCGCATATAAAGTCGATAACTATTCT 58.479 33.333 0.00 0.00 37.17 2.40
3365 4797 9.874215 GTCCTTATTTTTACCGCATATAAAGTC 57.126 33.333 0.00 0.00 0.00 3.01
3400 4832 0.451135 GCTAAGTTTGCGTGTGCTCG 60.451 55.000 0.00 0.00 43.34 5.03
3431 4863 6.635030 AGTTCCATCACAAGAAACTTAACC 57.365 37.500 0.00 0.00 0.00 2.85
3433 4865 7.660208 GGACTAGTTCCATCACAAGAAACTTAA 59.340 37.037 0.00 0.00 45.10 1.85
3454 4886 6.613699 TCTAAGATATAAACCCGGTGGACTA 58.386 40.000 0.00 0.00 34.81 2.59
3458 4890 6.430000 CCAAATCTAAGATATAAACCCGGTGG 59.570 42.308 0.00 0.00 37.80 4.61
3467 4899 7.885297 GCACCATTGCCAAATCTAAGATATAA 58.115 34.615 0.00 0.00 43.66 0.98
3471 4903 4.660789 GCACCATTGCCAAATCTAAGAT 57.339 40.909 0.00 0.00 43.66 2.40
3486 4918 0.238289 CAGAAAAACGCGAGCACCAT 59.762 50.000 15.93 0.00 0.00 3.55
3491 4923 5.992489 AATAAATTCAGAAAAACGCGAGC 57.008 34.783 15.93 0.00 0.00 5.03
3518 4950 5.472320 TTGAACGAACATTGTCGAAAAGA 57.528 34.783 13.15 0.00 43.86 2.52
3555 4987 0.109458 ATGCGCTTTGTAGTCGACGA 60.109 50.000 9.73 0.94 0.00 4.20
3584 5016 8.492748 GTCGGCATTATATTTTAAGATTGACGA 58.507 33.333 3.03 3.03 40.71 4.20
3602 5034 4.202161 ACTTCGAGATAATGAGTCGGCATT 60.202 41.667 0.00 0.00 41.15 3.56
3608 5040 5.344066 TGAGCAACTTCGAGATAATGAGTC 58.656 41.667 0.00 0.00 0.00 3.36
3609 5041 5.330455 TGAGCAACTTCGAGATAATGAGT 57.670 39.130 0.00 0.00 0.00 3.41
3621 5053 5.538433 AGAGTCTATCCCTATGAGCAACTTC 59.462 44.000 0.00 0.00 0.00 3.01
3625 5057 5.066913 TCAGAGTCTATCCCTATGAGCAA 57.933 43.478 0.00 0.00 0.00 3.91
3630 5062 4.022416 GCACACTCAGAGTCTATCCCTATG 60.022 50.000 0.00 0.00 0.00 2.23
3634 5066 1.066303 CGCACACTCAGAGTCTATCCC 59.934 57.143 0.00 0.00 0.00 3.85
3635 5067 1.535015 GCGCACACTCAGAGTCTATCC 60.535 57.143 0.30 0.00 0.00 2.59
3636 5068 1.133216 TGCGCACACTCAGAGTCTATC 59.867 52.381 5.66 0.00 0.00 2.08
3640 5072 1.151668 AAATGCGCACACTCAGAGTC 58.848 50.000 14.90 0.00 0.00 3.36
3642 5074 6.152379 TCTATATAAATGCGCACACTCAGAG 58.848 40.000 14.90 6.24 0.00 3.35
3644 5076 6.957984 ATCTATATAAATGCGCACACTCAG 57.042 37.500 14.90 4.48 0.00 3.35
3646 5078 8.376203 CACTTATCTATATAAATGCGCACACTC 58.624 37.037 14.90 0.00 0.00 3.51
3648 5080 8.018677 ACACTTATCTATATAAATGCGCACAC 57.981 34.615 14.90 0.00 29.76 3.82
3706 5138 7.588488 GTGCGCTTGTTTTCTTTAACATAGTAA 59.412 33.333 9.73 0.00 37.81 2.24
3711 5143 4.677584 TGTGCGCTTGTTTTCTTTAACAT 58.322 34.783 9.73 0.00 37.81 2.71
3719 5151 1.447938 CGTTGATGTGCGCTTGTTTTC 59.552 47.619 9.73 0.00 0.00 2.29
3720 5152 1.476074 CGTTGATGTGCGCTTGTTTT 58.524 45.000 9.73 0.00 0.00 2.43
3735 5167 0.664166 GTTGTTCCATGCTGGCGTTG 60.664 55.000 0.00 0.00 37.47 4.10
3759 5191 0.790866 GTGCATGAAACTTCGCGAGC 60.791 55.000 9.59 7.39 0.00 5.03
3802 5234 5.346181 AAATTTGGTCGTTCCCTCAAAAA 57.654 34.783 0.00 0.00 33.62 1.94
3803 5235 6.658188 ATAAATTTGGTCGTTCCCTCAAAA 57.342 33.333 0.00 0.00 33.62 2.44
3804 5236 6.265649 TGAATAAATTTGGTCGTTCCCTCAAA 59.734 34.615 0.00 0.00 34.28 2.69
3805 5237 5.770663 TGAATAAATTTGGTCGTTCCCTCAA 59.229 36.000 0.00 0.00 34.77 3.02
3806 5238 5.317808 TGAATAAATTTGGTCGTTCCCTCA 58.682 37.500 0.00 0.00 34.77 3.86
3807 5239 5.890424 TGAATAAATTTGGTCGTTCCCTC 57.110 39.130 0.00 0.00 34.77 4.30
3808 5240 5.949354 TGATGAATAAATTTGGTCGTTCCCT 59.051 36.000 0.00 0.00 34.77 4.20
3809 5241 6.202516 TGATGAATAAATTTGGTCGTTCCC 57.797 37.500 0.00 0.00 34.77 3.97
3810 5242 8.527567 TTTTGATGAATAAATTTGGTCGTTCC 57.472 30.769 0.00 0.00 0.00 3.62
3811 5243 8.162245 GCTTTTGATGAATAAATTTGGTCGTTC 58.838 33.333 0.00 1.01 0.00 3.95
3812 5244 7.117667 GGCTTTTGATGAATAAATTTGGTCGTT 59.882 33.333 0.00 0.00 0.00 3.85
3813 5245 6.589907 GGCTTTTGATGAATAAATTTGGTCGT 59.410 34.615 0.00 0.00 0.00 4.34
3814 5246 6.589523 TGGCTTTTGATGAATAAATTTGGTCG 59.410 34.615 0.00 0.00 0.00 4.79
3815 5247 7.387397 TGTGGCTTTTGATGAATAAATTTGGTC 59.613 33.333 0.00 0.00 0.00 4.02
3816 5248 7.222872 TGTGGCTTTTGATGAATAAATTTGGT 58.777 30.769 0.00 0.00 0.00 3.67
3817 5249 7.670009 TGTGGCTTTTGATGAATAAATTTGG 57.330 32.000 0.00 0.00 0.00 3.28
3822 5254 9.421806 CACTTATTGTGGCTTTTGATGAATAAA 57.578 29.630 0.00 0.00 42.68 1.40
3823 5255 8.984891 CACTTATTGTGGCTTTTGATGAATAA 57.015 30.769 0.00 0.00 42.68 1.40
3838 5270 7.389803 TCAACATTGTATCCCACTTATTGTG 57.610 36.000 0.00 0.00 45.80 3.33
3839 5271 7.833682 TGATCAACATTGTATCCCACTTATTGT 59.166 33.333 0.00 0.00 0.00 2.71
3840 5272 8.224389 TGATCAACATTGTATCCCACTTATTG 57.776 34.615 0.00 0.00 0.00 1.90
3841 5273 8.853126 CATGATCAACATTGTATCCCACTTATT 58.147 33.333 0.00 0.00 37.07 1.40
3842 5274 8.219868 TCATGATCAACATTGTATCCCACTTAT 58.780 33.333 0.00 0.00 37.07 1.73
3843 5275 7.572814 TCATGATCAACATTGTATCCCACTTA 58.427 34.615 0.00 0.00 37.07 2.24
3844 5276 6.425735 TCATGATCAACATTGTATCCCACTT 58.574 36.000 0.00 0.00 37.07 3.16
3845 5277 6.005066 TCATGATCAACATTGTATCCCACT 57.995 37.500 0.00 0.00 37.07 4.00
3846 5278 5.240183 CCTCATGATCAACATTGTATCCCAC 59.760 44.000 0.00 0.00 37.07 4.61
3847 5279 5.103982 ACCTCATGATCAACATTGTATCCCA 60.104 40.000 0.00 0.00 37.07 4.37
3848 5280 5.380043 ACCTCATGATCAACATTGTATCCC 58.620 41.667 0.00 0.00 37.07 3.85
3849 5281 6.238842 CCAACCTCATGATCAACATTGTATCC 60.239 42.308 0.00 0.00 37.07 2.59
3850 5282 6.319658 ACCAACCTCATGATCAACATTGTATC 59.680 38.462 0.00 0.00 37.07 2.24
3851 5283 6.189859 ACCAACCTCATGATCAACATTGTAT 58.810 36.000 0.00 0.00 37.07 2.29
3852 5284 5.569355 ACCAACCTCATGATCAACATTGTA 58.431 37.500 0.00 0.00 37.07 2.41
3853 5285 4.410099 ACCAACCTCATGATCAACATTGT 58.590 39.130 0.00 0.00 37.07 2.71
3854 5286 4.460034 TGACCAACCTCATGATCAACATTG 59.540 41.667 0.00 0.77 37.07 2.82
3855 5287 4.665451 TGACCAACCTCATGATCAACATT 58.335 39.130 0.00 0.00 37.07 2.71
3856 5288 4.305539 TGACCAACCTCATGATCAACAT 57.694 40.909 0.00 0.00 40.17 2.71
3857 5289 3.786368 TGACCAACCTCATGATCAACA 57.214 42.857 0.00 0.00 0.00 3.33
3858 5290 3.119708 GCTTGACCAACCTCATGATCAAC 60.120 47.826 0.00 0.00 0.00 3.18
3859 5291 3.084039 GCTTGACCAACCTCATGATCAA 58.916 45.455 0.00 1.25 0.00 2.57
3860 5292 2.618816 GGCTTGACCAACCTCATGATCA 60.619 50.000 0.00 0.00 38.86 2.92
3861 5293 2.019984 GGCTTGACCAACCTCATGATC 58.980 52.381 0.00 0.00 38.86 2.92
3862 5294 2.134789 GGCTTGACCAACCTCATGAT 57.865 50.000 0.00 0.00 38.86 2.45
3863 5295 3.650647 GGCTTGACCAACCTCATGA 57.349 52.632 0.00 0.00 38.86 3.07
3873 5305 1.933853 GTCGTCATGTATGGCTTGACC 59.066 52.381 0.00 0.00 44.60 4.02
3874 5306 1.933853 GGTCGTCATGTATGGCTTGAC 59.066 52.381 0.00 0.00 44.23 3.18
3875 5307 1.134521 GGGTCGTCATGTATGGCTTGA 60.135 52.381 0.00 0.00 0.00 3.02
3876 5308 1.134401 AGGGTCGTCATGTATGGCTTG 60.134 52.381 0.00 0.00 0.00 4.01
3877 5309 1.134401 CAGGGTCGTCATGTATGGCTT 60.134 52.381 0.00 0.00 0.00 4.35
3878 5310 0.465705 CAGGGTCGTCATGTATGGCT 59.534 55.000 0.00 0.00 0.00 4.75
3879 5311 1.160329 GCAGGGTCGTCATGTATGGC 61.160 60.000 0.00 0.00 0.00 4.40
3880 5312 0.465705 AGCAGGGTCGTCATGTATGG 59.534 55.000 0.00 0.00 0.00 2.74
3881 5313 1.136891 TCAGCAGGGTCGTCATGTATG 59.863 52.381 0.00 0.00 0.00 2.39
3882 5314 1.485124 TCAGCAGGGTCGTCATGTAT 58.515 50.000 0.00 0.00 0.00 2.29
3883 5315 1.204704 CTTCAGCAGGGTCGTCATGTA 59.795 52.381 0.00 0.00 0.00 2.29
3884 5316 0.036952 CTTCAGCAGGGTCGTCATGT 60.037 55.000 0.00 0.00 0.00 3.21
3885 5317 1.364626 GCTTCAGCAGGGTCGTCATG 61.365 60.000 0.00 0.00 41.59 3.07
3886 5318 1.078848 GCTTCAGCAGGGTCGTCAT 60.079 57.895 0.00 0.00 41.59 3.06
3887 5319 2.343758 GCTTCAGCAGGGTCGTCA 59.656 61.111 0.00 0.00 41.59 4.35
3888 5320 1.605058 TAGGCTTCAGCAGGGTCGTC 61.605 60.000 0.30 0.00 44.36 4.20
3889 5321 1.609501 TAGGCTTCAGCAGGGTCGT 60.610 57.895 0.30 0.00 44.36 4.34
3890 5322 1.153549 GTAGGCTTCAGCAGGGTCG 60.154 63.158 0.30 0.00 44.36 4.79
3891 5323 1.153549 CGTAGGCTTCAGCAGGGTC 60.154 63.158 0.30 0.00 44.36 4.46
3892 5324 1.608717 CTCGTAGGCTTCAGCAGGGT 61.609 60.000 0.30 0.00 44.36 4.34
3893 5325 1.142748 CTCGTAGGCTTCAGCAGGG 59.857 63.158 0.30 0.00 44.36 4.45
3894 5326 0.532573 TTCTCGTAGGCTTCAGCAGG 59.467 55.000 0.30 0.00 44.36 4.85
3895 5327 2.200067 CATTCTCGTAGGCTTCAGCAG 58.800 52.381 0.30 0.00 44.36 4.24
3896 5328 1.550524 ACATTCTCGTAGGCTTCAGCA 59.449 47.619 0.30 0.00 44.36 4.41
3897 5329 2.301577 ACATTCTCGTAGGCTTCAGC 57.698 50.000 0.00 0.00 41.14 4.26
3898 5330 3.372206 CCAAACATTCTCGTAGGCTTCAG 59.628 47.826 0.00 0.00 0.00 3.02
3899 5331 3.334691 CCAAACATTCTCGTAGGCTTCA 58.665 45.455 0.00 0.00 0.00 3.02
3900 5332 2.096013 GCCAAACATTCTCGTAGGCTTC 59.904 50.000 0.00 0.00 37.28 3.86
3901 5333 2.084546 GCCAAACATTCTCGTAGGCTT 58.915 47.619 0.00 0.00 37.28 4.35
3902 5334 1.279271 AGCCAAACATTCTCGTAGGCT 59.721 47.619 0.00 0.00 42.49 4.58
3903 5335 1.739067 AGCCAAACATTCTCGTAGGC 58.261 50.000 0.00 0.00 39.34 3.93
3904 5336 4.201822 GCTTTAGCCAAACATTCTCGTAGG 60.202 45.833 0.00 0.00 34.31 3.18
3905 5337 4.391830 TGCTTTAGCCAAACATTCTCGTAG 59.608 41.667 0.00 0.00 41.18 3.51
3906 5338 4.320023 TGCTTTAGCCAAACATTCTCGTA 58.680 39.130 0.00 0.00 41.18 3.43
3907 5339 3.146066 TGCTTTAGCCAAACATTCTCGT 58.854 40.909 0.00 0.00 41.18 4.18
3908 5340 3.829886 TGCTTTAGCCAAACATTCTCG 57.170 42.857 0.00 0.00 41.18 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.