Multiple sequence alignment - TraesCS5A01G440600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G440600 chr5A 100.000 4162 0 0 1 4162 621855882 621851721 0.000000e+00 7686
1 TraesCS5A01G440600 chr5D 94.670 4203 166 19 1 4162 497829191 497825006 0.000000e+00 6468
2 TraesCS5A01G440600 chr5B 95.625 3817 134 9 374 4162 616972133 616968322 0.000000e+00 6093
3 TraesCS5A01G440600 chr5B 89.205 352 23 6 1 346 616972471 616972129 3.850000e-115 425


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G440600 chr5A 621851721 621855882 4161 True 7686 7686 100.000 1 4162 1 chr5A.!!$R1 4161
1 TraesCS5A01G440600 chr5D 497825006 497829191 4185 True 6468 6468 94.670 1 4162 1 chr5D.!!$R1 4161
2 TraesCS5A01G440600 chr5B 616968322 616972471 4149 True 3259 6093 92.415 1 4162 2 chr5B.!!$R1 4161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 363 0.036732 TCCGAGATGCATATTGGGGC 59.963 55.0 24.38 0.0 0.00 5.80 F
551 559 0.703488 TGGCACAATTGGAGGATGGA 59.297 50.0 10.83 0.0 31.92 3.41 F
1701 1753 0.721718 GGCGTTCGGAGATGAACAAG 59.278 55.0 7.33 0.0 46.77 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1753 1.918609 GAGACCGAAGTTCATGCGTAC 59.081 52.381 3.32 0.00 0.0 3.67 R
2024 2076 1.926426 AAGGGGGTGTCCTAGCATGC 61.926 60.000 10.51 10.51 35.8 4.06 R
3418 3470 0.037590 TGTACCCAACCCATGCAGTC 59.962 55.000 0.00 0.00 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.056607 GTCCATGGTGCATTTATATGGCC 60.057 47.826 12.58 0.00 38.49 5.36
66 67 4.448720 TGCCATCTGAATCCATCATTCT 57.551 40.909 0.00 0.00 41.58 2.40
130 132 1.625818 TCTTCTTGCCCTCTTCAGGAC 59.374 52.381 0.00 0.00 43.65 3.85
165 167 0.749649 CAGGCTAGGCTACAGTCTGG 59.250 60.000 19.78 0.00 41.16 3.86
177 179 1.203313 ACAGTCTGGTCCCCACTGTAT 60.203 52.381 17.56 0.00 38.51 2.29
208 210 6.228273 TGATAACTTCTTGTTTCAAGCTCG 57.772 37.500 4.82 0.00 39.89 5.03
234 236 9.983804 GTATTTATTTCGTACTCTTCCTTTTGG 57.016 33.333 0.00 0.00 42.21 3.28
278 283 2.923020 CAGTCAAACATTTTATGCGCCC 59.077 45.455 4.18 0.00 0.00 6.13
343 350 6.124340 TCTGGTATGTTTACTGTATCCGAGA 58.876 40.000 0.00 0.00 0.00 4.04
356 363 0.036732 TCCGAGATGCATATTGGGGC 59.963 55.000 24.38 0.00 0.00 5.80
377 384 2.541346 CTGTATACTTGTCATGCAGCCG 59.459 50.000 4.17 0.00 30.93 5.52
524 532 8.621532 TGTCAGCATTTCATATAAGATTACCC 57.378 34.615 0.00 0.00 0.00 3.69
550 558 0.819582 GTGGCACAATTGGAGGATGG 59.180 55.000 13.86 0.00 44.16 3.51
551 559 0.703488 TGGCACAATTGGAGGATGGA 59.297 50.000 10.83 0.00 31.92 3.41
552 560 1.288633 TGGCACAATTGGAGGATGGAT 59.711 47.619 10.83 0.00 31.92 3.41
553 561 1.684983 GGCACAATTGGAGGATGGATG 59.315 52.381 10.83 0.00 0.00 3.51
570 578 2.102252 GGATGAGAGTAGCAAGGACAGG 59.898 54.545 0.00 0.00 0.00 4.00
610 620 2.488347 CCTTTCCCTTTCCTGAACCGAA 60.488 50.000 0.00 0.00 0.00 4.30
692 717 3.756117 GTTCTCCAACCAAGGAATGTCT 58.244 45.455 0.00 0.00 37.20 3.41
705 730 4.858850 AGGAATGTCTACATGCATCCAAA 58.141 39.130 12.57 0.00 34.67 3.28
732 757 4.827284 CCAAAAGAATAGTGTGGTCCAGTT 59.173 41.667 0.00 0.00 0.00 3.16
745 770 2.427506 GTCCAGTTTACTCTTGGGCTG 58.572 52.381 0.00 0.00 0.00 4.85
757 782 5.269991 ACTCTTGGGCTGTAGTAGTATTGA 58.730 41.667 0.00 0.00 0.00 2.57
834 859 2.376518 TCTCCCAATTCTGGCTGAAAGT 59.623 45.455 10.95 0.00 41.99 2.66
871 906 6.938596 CCATCTGCTCATCACCATTTATCTTA 59.061 38.462 0.00 0.00 0.00 2.10
872 907 7.610692 CCATCTGCTCATCACCATTTATCTTAT 59.389 37.037 0.00 0.00 0.00 1.73
902 937 8.214364 AGGTTCTTAACTTCTCTTTCTTCACAT 58.786 33.333 0.00 0.00 0.00 3.21
932 974 9.902196 TTTTCCGTTTCTACATAATTTCTTTCC 57.098 29.630 0.00 0.00 0.00 3.13
959 1001 9.937175 CGTTAACTTCTTTTCTTCTCTGAAATT 57.063 29.630 3.71 0.00 36.07 1.82
1005 1047 1.794714 TACCTCCTCTCAGAATGGGC 58.205 55.000 0.00 0.00 35.62 5.36
1008 1050 2.203126 CCTCTCAGAATGGGCGCC 60.203 66.667 21.18 21.18 35.62 6.53
1356 1398 9.499479 TGTATTTACTTGGGTAAACGTTTGATA 57.501 29.630 23.46 0.24 46.46 2.15
1408 1450 6.835488 AGCAGATATTTTGGAGAAATTAGGCA 59.165 34.615 0.00 0.00 0.00 4.75
1484 1526 8.298030 GCTACTGCAAAGTTAATTTTGACAAT 57.702 30.769 23.16 14.11 39.79 2.71
1485 1527 8.216453 GCTACTGCAAAGTTAATTTTGACAATG 58.784 33.333 23.16 13.10 39.79 2.82
1487 1529 6.762661 ACTGCAAAGTTAATTTTGACAATGCT 59.237 30.769 23.16 5.15 39.79 3.79
1701 1753 0.721718 GGCGTTCGGAGATGAACAAG 59.278 55.000 7.33 0.00 46.77 3.16
1753 1805 7.657761 GTGGGTTTCTGTATCTGATACTTATGG 59.342 40.741 23.96 11.77 36.70 2.74
1824 1876 8.430063 CAAATTATCACACTGTTGCTGAATTTC 58.570 33.333 0.00 0.00 0.00 2.17
2024 2076 3.076621 TGACAAAGCTTGCAGTATCCTG 58.923 45.455 0.00 0.00 41.91 3.86
2219 2271 1.599542 GGTCGCCTATTGAATGCTGAC 59.400 52.381 0.00 0.00 0.00 3.51
2252 2304 4.349342 AGACACTGGAAGAAAGTTCTGGAT 59.651 41.667 0.00 0.00 37.65 3.41
2378 2430 1.407258 TGGCGTTTTGAACCTCAAAGG 59.593 47.619 2.39 0.00 45.77 3.11
2579 2631 1.799548 GCTCGGAATGTCTCGAAGGAC 60.800 57.143 0.00 0.00 34.87 3.85
2771 2823 7.012138 CCAGATGATGTATTCAAGAAGTCCAAG 59.988 40.741 0.00 0.00 38.03 3.61
2795 2847 1.069765 CCGTGTGCTGGACTTGAGT 59.930 57.895 0.00 0.00 0.00 3.41
2898 2950 3.587923 CCGTGGCAAACATCATTGATTT 58.412 40.909 0.00 0.00 31.84 2.17
2906 2958 7.311364 GCAAACATCATTGATTTGGCTTTAT 57.689 32.000 12.38 0.00 34.55 1.40
2988 3040 6.494883 CTTCCTGCAAACATGAAGAGGAACT 61.495 44.000 0.00 0.00 45.96 3.01
3050 3102 1.865865 CCACGATATCTGGTTTCGGG 58.134 55.000 5.79 0.96 37.20 5.14
3150 3202 7.500559 AGGAGATGAAAAATATTAGTGGACAGC 59.499 37.037 0.00 0.00 0.00 4.40
3152 3204 9.547753 GAGATGAAAAATATTAGTGGACAGCTA 57.452 33.333 0.00 0.00 0.00 3.32
3214 3266 2.697654 CAGCTAATGCCTGCCTAGATC 58.302 52.381 0.00 0.00 40.80 2.75
3225 3277 1.066215 TGCCTAGATCGCAAAGAGCAA 60.066 47.619 0.00 0.00 46.13 3.91
3229 3281 3.873361 CCTAGATCGCAAAGAGCAAATCA 59.127 43.478 0.00 0.00 46.13 2.57
3285 3337 7.475840 CAAGGGCTTTAACTTCTGATATTGAC 58.524 38.462 0.00 0.00 0.00 3.18
3307 3359 0.321919 TGATGTGCTCAGTGCCCTTC 60.322 55.000 0.00 0.00 42.00 3.46
3317 3369 3.691342 TGCCCTTCGACCTCACCG 61.691 66.667 0.00 0.00 0.00 4.94
3319 3371 2.261671 CCCTTCGACCTCACCGTG 59.738 66.667 0.00 0.00 0.00 4.94
3320 3372 2.261671 CCTTCGACCTCACCGTGG 59.738 66.667 0.00 0.00 0.00 4.94
3327 3379 2.523440 ACCTCACCGTGGTCTTGAA 58.477 52.632 0.00 0.00 31.03 2.69
3356 3408 7.339177 TGAAGATCATTGGATATGGAGGAAT 57.661 36.000 0.00 0.00 32.67 3.01
3418 3470 5.163774 GCATTGAGTTCTTTAGCTCTTGAGG 60.164 44.000 0.00 0.00 33.22 3.86
3450 3502 0.611062 GGGTACAGTTGCCCCCTTTC 60.611 60.000 0.00 0.00 41.91 2.62
3480 3532 4.998671 TCCTCTGCTCAAGTATCTTGAG 57.001 45.455 25.74 25.74 46.42 3.02
3510 3562 3.991367 CATGCATGCTGTCAGAGAGATA 58.009 45.455 20.33 0.00 0.00 1.98
3538 3590 4.708177 AGAATTCTATGGGAATGGTGACG 58.292 43.478 6.06 0.00 43.17 4.35
3549 3601 2.579410 ATGGTGACGTAAAGGGCTTT 57.421 45.000 0.00 0.00 36.63 3.51
3585 3637 5.048013 AGACATGATATTTGATGGCATGCTG 60.048 40.000 18.92 5.41 39.82 4.41
3633 3685 4.525912 AGATGGTTCTTTGTTTCCATGC 57.474 40.909 0.00 0.00 40.24 4.06
3642 3694 4.648762 TCTTTGTTTCCATGCCTTGAAAGA 59.351 37.500 0.00 0.00 31.55 2.52
3800 3852 6.045955 GGTTGATCTTTCTAGTTAGCTCCTG 58.954 44.000 0.00 0.00 0.00 3.86
3946 3998 4.154195 GGATCAGCAACTGTTCAACGTTAT 59.846 41.667 0.00 0.00 33.36 1.89
3988 4040 8.292448 CAGAAGCAGTTGACACATATTTACTTT 58.708 33.333 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.394077 CCATATAAATGCACCATGGACTTATCA 59.606 37.037 21.47 6.77 38.77 2.15
33 34 2.094597 TCAGATGGCAAAATTCAAGCGG 60.095 45.455 0.00 0.00 0.00 5.52
66 67 5.878332 TTTCAGCGCATAGAAAATGAGAA 57.122 34.783 11.47 0.00 31.35 2.87
143 145 0.747852 GACTGTAGCCTAGCCTGGTC 59.252 60.000 0.00 0.00 0.00 4.02
144 146 0.336737 AGACTGTAGCCTAGCCTGGT 59.663 55.000 0.00 0.00 0.00 4.00
145 147 0.749649 CAGACTGTAGCCTAGCCTGG 59.250 60.000 0.00 0.00 0.00 4.45
177 179 4.085357 ACAAGAAGTTATCAGCACACCA 57.915 40.909 0.00 0.00 0.00 4.17
185 187 5.758296 ACGAGCTTGAAACAAGAAGTTATCA 59.242 36.000 8.31 0.00 40.26 2.15
208 210 9.983804 CCAAAAGGAAGAGTACGAAATAAATAC 57.016 33.333 0.00 0.00 0.00 1.89
234 236 6.016718 TGCGCGTTTACTAAAACACATATTC 58.983 36.000 8.43 0.00 44.37 1.75
254 259 2.026742 CGCATAAAATGTTTGACTGCGC 59.973 45.455 0.00 0.00 43.39 6.09
293 300 9.632638 AATTATATTGTACCAAAGCATCTGTCT 57.367 29.630 0.00 0.00 0.00 3.41
325 332 5.276461 TGCATCTCGGATACAGTAAACAT 57.724 39.130 0.00 0.00 0.00 2.71
343 350 4.934797 AGTATACAGCCCCAATATGCAT 57.065 40.909 3.79 3.79 0.00 3.96
356 363 2.541346 CGGCTGCATGACAAGTATACAG 59.459 50.000 5.50 0.00 0.00 2.74
376 383 9.974750 GAAAGAATCTCACCTTTTATTTCTACG 57.025 33.333 0.00 0.00 33.23 3.51
524 532 1.411977 TCCAATTGTGCCACAAACCAG 59.588 47.619 15.17 4.30 41.96 4.00
550 558 3.027412 TCCTGTCCTTGCTACTCTCATC 58.973 50.000 0.00 0.00 0.00 2.92
551 559 3.107402 TCCTGTCCTTGCTACTCTCAT 57.893 47.619 0.00 0.00 0.00 2.90
552 560 2.563179 GTTCCTGTCCTTGCTACTCTCA 59.437 50.000 0.00 0.00 0.00 3.27
553 561 2.093921 GGTTCCTGTCCTTGCTACTCTC 60.094 54.545 0.00 0.00 0.00 3.20
570 578 5.774498 AAGGTCTGAAAAGTCAATGGTTC 57.226 39.130 0.00 0.00 31.88 3.62
689 714 4.009675 TGGAAGTTTGGATGCATGTAGAC 58.990 43.478 2.46 0.00 0.00 2.59
691 716 5.389859 TTTGGAAGTTTGGATGCATGTAG 57.610 39.130 2.46 0.00 0.00 2.74
692 717 5.538053 TCTTTTGGAAGTTTGGATGCATGTA 59.462 36.000 2.46 0.00 34.41 2.29
705 730 5.070685 GGACCACACTATTCTTTTGGAAGT 58.929 41.667 0.00 0.00 37.36 3.01
732 757 6.893554 TCAATACTACTACAGCCCAAGAGTAA 59.106 38.462 0.00 0.00 0.00 2.24
834 859 0.462581 GCAGATGGATGCGACCTTGA 60.463 55.000 0.00 0.00 36.28 3.02
871 906 8.201242 AGAAAGAGAAGTTAAGAACCTGAGAT 57.799 34.615 0.00 0.00 0.00 2.75
872 907 7.604657 AGAAAGAGAAGTTAAGAACCTGAGA 57.395 36.000 0.00 0.00 0.00 3.27
914 949 9.729281 AGTTAACGGGAAAGAAATTATGTAGAA 57.271 29.630 0.00 0.00 0.00 2.10
915 950 9.729281 AAGTTAACGGGAAAGAAATTATGTAGA 57.271 29.630 0.00 0.00 0.00 2.59
916 951 9.983804 GAAGTTAACGGGAAAGAAATTATGTAG 57.016 33.333 0.00 0.00 0.00 2.74
917 952 9.729281 AGAAGTTAACGGGAAAGAAATTATGTA 57.271 29.630 0.00 0.00 0.00 2.29
918 953 8.631480 AGAAGTTAACGGGAAAGAAATTATGT 57.369 30.769 0.00 0.00 0.00 2.29
919 954 9.908152 AAAGAAGTTAACGGGAAAGAAATTATG 57.092 29.630 0.00 0.00 0.00 1.90
932 974 7.478520 TTCAGAGAAGAAAAGAAGTTAACGG 57.521 36.000 0.00 0.00 0.00 4.44
988 1030 1.445095 CGCCCATTCTGAGAGGAGG 59.555 63.158 0.00 0.00 0.00 4.30
1005 1047 0.986992 CCGTAACAGTTAGTTCGGCG 59.013 55.000 0.00 0.00 40.92 6.46
1008 1050 2.331194 CACCCCGTAACAGTTAGTTCG 58.669 52.381 0.00 0.00 41.64 3.95
1356 1398 2.125673 CGGAATTCGTCGGCACCT 60.126 61.111 0.00 0.00 0.00 4.00
1375 1417 5.367937 TCTCCAAAATATCTGCTAGCTTCCT 59.632 40.000 17.23 0.66 0.00 3.36
1408 1450 4.697352 GGTATCTGCTGTTGTCTTGACAAT 59.303 41.667 17.56 4.55 31.79 2.71
1474 1516 4.677182 AGGGGAAGTAGCATTGTCAAAAT 58.323 39.130 0.00 0.00 0.00 1.82
1476 1518 3.806949 AGGGGAAGTAGCATTGTCAAA 57.193 42.857 0.00 0.00 0.00 2.69
1477 1519 3.806949 AAGGGGAAGTAGCATTGTCAA 57.193 42.857 0.00 0.00 0.00 3.18
1478 1520 3.073798 TCAAAGGGGAAGTAGCATTGTCA 59.926 43.478 0.00 0.00 0.00 3.58
1479 1521 3.686016 TCAAAGGGGAAGTAGCATTGTC 58.314 45.455 0.00 0.00 0.00 3.18
1480 1522 3.806949 TCAAAGGGGAAGTAGCATTGT 57.193 42.857 0.00 0.00 0.00 2.71
1481 1523 3.445096 CCTTCAAAGGGGAAGTAGCATTG 59.555 47.826 0.50 0.00 42.14 2.82
1484 1526 2.344592 TCCTTCAAAGGGGAAGTAGCA 58.655 47.619 8.89 0.00 46.47 3.49
1485 1527 3.434940 TTCCTTCAAAGGGGAAGTAGC 57.565 47.619 8.89 0.00 46.47 3.58
1487 1529 5.773176 GTGATTTTCCTTCAAAGGGGAAGTA 59.227 40.000 8.89 0.00 46.47 2.24
1701 1753 1.918609 GAGACCGAAGTTCATGCGTAC 59.081 52.381 3.32 0.00 0.00 3.67
1848 1900 9.351570 GAGAAATTTCTTTCCAGCTATCTTTTG 57.648 33.333 21.33 0.00 41.46 2.44
2024 2076 1.926426 AAGGGGGTGTCCTAGCATGC 61.926 60.000 10.51 10.51 35.80 4.06
2219 2271 3.007290 TCTTCCAGTGTCTGACATCCAAG 59.993 47.826 14.37 12.93 32.44 3.61
2231 2283 4.713792 ATCCAGAACTTTCTTCCAGTGT 57.286 40.909 0.00 0.00 34.74 3.55
2285 2337 3.577805 AAGTGCTGGTAACTCAACCTT 57.422 42.857 0.00 0.00 40.44 3.50
2378 2430 2.229543 TGCAATCCACATTTCAGTGAGC 59.770 45.455 0.00 0.00 42.05 4.26
2579 2631 4.935205 TCATTTTCAACCCTGACATACTCG 59.065 41.667 0.00 0.00 0.00 4.18
2795 2847 3.976704 CCTATCCAGGCAACAACCA 57.023 52.632 0.00 0.00 41.41 3.67
2988 3040 7.500141 AGGAAAGCTTTTCTTAATTTGAGCAA 58.500 30.769 14.64 0.00 33.88 3.91
3050 3102 1.608283 CCACGGAGAAGAGTTTGTCCC 60.608 57.143 0.00 0.00 42.34 4.46
3168 3220 5.065235 TCTTGCTGATGTTCAACATTCTCA 58.935 37.500 4.04 0.00 39.27 3.27
3197 3249 1.001293 TGCGATCTAGGCAGGCATTAG 59.999 52.381 0.00 0.00 35.04 1.73
3214 3266 6.310956 TCCAAATATTTGATTTGCTCTTTGCG 59.689 34.615 26.32 7.23 41.76 4.85
3225 3277 8.421249 TCCACTCAAGTTCCAAATATTTGATT 57.579 30.769 26.32 13.64 40.55 2.57
3229 3281 5.774690 TGCTCCACTCAAGTTCCAAATATTT 59.225 36.000 0.00 0.00 0.00 1.40
3317 3369 0.868406 CTTCAGCCGTTCAAGACCAC 59.132 55.000 0.00 0.00 0.00 4.16
3319 3371 2.003301 GATCTTCAGCCGTTCAAGACC 58.997 52.381 0.00 0.00 0.00 3.85
3320 3372 2.688507 TGATCTTCAGCCGTTCAAGAC 58.311 47.619 0.00 0.00 0.00 3.01
3327 3379 4.321718 CATATCCAATGATCTTCAGCCGT 58.678 43.478 0.00 0.00 32.18 5.68
3331 3383 6.370186 TCCTCCATATCCAATGATCTTCAG 57.630 41.667 0.00 0.00 32.18 3.02
3379 3431 2.629137 TCAATGCAGTCAGCCAATTTGT 59.371 40.909 0.00 0.00 44.83 2.83
3418 3470 0.037590 TGTACCCAACCCATGCAGTC 59.962 55.000 0.00 0.00 0.00 3.51
3450 3502 1.153667 GAGCAGAGGAAGCTGACCG 60.154 63.158 0.00 0.00 43.58 4.79
3504 3556 7.309091 TCCCATAGAATTCTTGACCTATCTCT 58.691 38.462 14.36 0.00 0.00 3.10
3505 3557 7.546250 TCCCATAGAATTCTTGACCTATCTC 57.454 40.000 14.36 0.00 0.00 2.75
3510 3562 5.194537 ACCATTCCCATAGAATTCTTGACCT 59.805 40.000 14.36 0.00 42.86 3.85
3585 3637 0.393537 CAGACCAGCCATCCCAGTTC 60.394 60.000 0.00 0.00 0.00 3.01
3633 3685 5.029014 CGTGATACGAGTAGTCTTTCAAGG 58.971 45.833 0.00 0.00 46.05 3.61
3642 3694 2.012673 GGACACCGTGATACGAGTAGT 58.987 52.381 5.28 1.79 46.05 2.73
3775 3827 5.961421 AGGAGCTAACTAGAAAGATCAACCT 59.039 40.000 13.58 0.00 29.70 3.50
3800 3852 2.739379 GTTAGGTCACTCAAGAAGCTGC 59.261 50.000 0.00 0.00 0.00 5.25
3946 3998 4.039124 TGCTTCTGTACTGACTGATGACAA 59.961 41.667 1.37 0.00 33.96 3.18
3988 4040 5.635278 TCAATATGGCAAAGAGATGGAGA 57.365 39.130 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.