Multiple sequence alignment - TraesCS5A01G440100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G440100 chr5A 100.000 3325 0 0 1 3325 621541387 621538063 0.000000e+00 6141.0
1 TraesCS5A01G440100 chr5A 93.878 98 6 0 135 232 458337246 458337343 8.070000e-32 148.0
2 TraesCS5A01G440100 chr5A 88.496 113 13 0 1895 2007 568594815 568594927 1.750000e-28 137.0
3 TraesCS5A01G440100 chr5A 100.000 54 0 0 3555 3608 621537833 621537780 2.290000e-17 100.0
4 TraesCS5A01G440100 chr5A 100.000 28 0 0 118 145 621541156 621541129 7.000000e-03 52.8
5 TraesCS5A01G440100 chr5A 100.000 28 0 0 232 259 621541270 621541243 7.000000e-03 52.8
6 TraesCS5A01G440100 chr5B 93.336 2371 96 28 489 2856 616440213 616437902 0.000000e+00 3446.0
7 TraesCS5A01G440100 chr5B 89.118 340 22 7 2656 2992 616437886 616437559 3.350000e-110 409.0
8 TraesCS5A01G440100 chr5B 87.986 283 15 9 232 512 616440776 616440511 2.090000e-82 316.0
9 TraesCS5A01G440100 chr5B 88.158 152 8 3 3 145 616440899 616440749 4.790000e-39 172.0
10 TraesCS5A01G440100 chr5D 94.638 2238 80 14 644 2860 497493577 497491359 0.000000e+00 3432.0
11 TraesCS5A01G440100 chr5D 91.304 345 23 3 232 574 497497485 497497146 7.060000e-127 464.0
12 TraesCS5A01G440100 chr5D 90.116 172 16 1 2468 2639 497489668 497489498 4.690000e-54 222.0
13 TraesCS5A01G440100 chr5D 90.845 142 12 1 3 144 497497599 497497459 4.760000e-44 189.0
14 TraesCS5A01G440100 chr5D 96.552 87 3 0 145 231 545281808 545281894 1.040000e-30 145.0
15 TraesCS5A01G440100 chr7D 88.217 1621 146 24 997 2591 102902295 102900694 0.000000e+00 1893.0
16 TraesCS5A01G440100 chr7B 87.916 1622 151 24 997 2591 61079177 61077574 0.000000e+00 1868.0
17 TraesCS5A01G440100 chr7A 87.630 1633 154 34 997 2591 107794240 107792618 0.000000e+00 1853.0
18 TraesCS5A01G440100 chr7A 94.898 98 5 0 135 232 66643500 66643403 1.730000e-33 154.0
19 TraesCS5A01G440100 chr7A 95.604 91 4 0 144 234 485195292 485195202 2.900000e-31 147.0
20 TraesCS5A01G440100 chr4D 90.149 335 24 6 2996 3325 40393424 40393754 9.260000e-116 427.0
21 TraesCS5A01G440100 chr4D 76.000 550 110 15 1214 1752 434147301 434146763 7.680000e-67 265.0
22 TraesCS5A01G440100 chr4A 88.988 336 27 5 2996 3325 559519426 559519095 1.210000e-109 407.0
23 TraesCS5A01G440100 chr4A 75.157 636 133 22 1185 1808 35568504 35567882 3.550000e-70 276.0
24 TraesCS5A01G440100 chr4A 73.810 630 139 21 1214 1830 35477812 35477196 3.620000e-55 226.0
25 TraesCS5A01G440100 chr4A 92.553 94 6 1 141 233 396757419 396757326 2.260000e-27 134.0
26 TraesCS5A01G440100 chr2D 72.454 1296 285 56 1201 2454 147968258 147966993 2.060000e-92 350.0
27 TraesCS5A01G440100 chr2D 89.320 103 10 1 137 239 201441559 201441660 1.050000e-25 128.0
28 TraesCS5A01G440100 chr2A 71.960 1291 294 51 1201 2451 154413986 154415248 2.090000e-82 316.0
29 TraesCS5A01G440100 chr4B 75.281 623 131 16 1197 1808 532720585 532719975 3.550000e-70 276.0
30 TraesCS5A01G440100 chr1D 75.601 541 118 12 1198 1730 483972817 483973351 4.620000e-64 255.0
31 TraesCS5A01G440100 chr1A 75.468 534 119 11 1203 1730 580988492 580989019 2.150000e-62 250.0
32 TraesCS5A01G440100 chr3B 92.857 98 7 0 135 232 9287013 9287110 3.760000e-30 143.0
33 TraesCS5A01G440100 chr6A 91.837 98 8 0 135 232 15468410 15468507 1.750000e-28 137.0
34 TraesCS5A01G440100 chr6A 93.333 90 6 0 143 232 1090372 1090283 2.260000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G440100 chr5A 621537780 621541387 3607 True 1586.65 6141 100.00000 1 3608 4 chr5A.!!$R1 3607
1 TraesCS5A01G440100 chr5B 616437559 616440899 3340 True 1085.75 3446 89.64950 3 2992 4 chr5B.!!$R1 2989
2 TraesCS5A01G440100 chr5D 497489498 497497599 8101 True 1076.75 3432 91.72575 3 2860 4 chr5D.!!$R1 2857
3 TraesCS5A01G440100 chr7D 102900694 102902295 1601 True 1893.00 1893 88.21700 997 2591 1 chr7D.!!$R1 1594
4 TraesCS5A01G440100 chr7B 61077574 61079177 1603 True 1868.00 1868 87.91600 997 2591 1 chr7B.!!$R1 1594
5 TraesCS5A01G440100 chr7A 107792618 107794240 1622 True 1853.00 1853 87.63000 997 2591 1 chr7A.!!$R2 1594
6 TraesCS5A01G440100 chr4D 434146763 434147301 538 True 265.00 265 76.00000 1214 1752 1 chr4D.!!$R1 538
7 TraesCS5A01G440100 chr4A 35567882 35568504 622 True 276.00 276 75.15700 1185 1808 1 chr4A.!!$R2 623
8 TraesCS5A01G440100 chr4A 35477196 35477812 616 True 226.00 226 73.81000 1214 1830 1 chr4A.!!$R1 616
9 TraesCS5A01G440100 chr2D 147966993 147968258 1265 True 350.00 350 72.45400 1201 2454 1 chr2D.!!$R1 1253
10 TraesCS5A01G440100 chr2A 154413986 154415248 1262 False 316.00 316 71.96000 1201 2451 1 chr2A.!!$F1 1250
11 TraesCS5A01G440100 chr4B 532719975 532720585 610 True 276.00 276 75.28100 1197 1808 1 chr4B.!!$R1 611
12 TraesCS5A01G440100 chr1D 483972817 483973351 534 False 255.00 255 75.60100 1198 1730 1 chr1D.!!$F1 532
13 TraesCS5A01G440100 chr1A 580988492 580989019 527 False 250.00 250 75.46800 1203 1730 1 chr1A.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 4578 0.665298 TGATCCGCTCTGATCTGACG 59.335 55.0 13.59 13.59 41.42 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2651 6554 1.447838 ACTACGGCCATGCGAAGTG 60.448 57.895 2.24 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.072211 TCCGTGTCCGACATATAGCTAG 58.928 50.000 4.13 0.00 35.63 3.42
72 73 3.501062 CCGTGTCCGACATATAGCTAGAA 59.499 47.826 4.13 0.00 35.63 2.10
78 79 7.815068 GTGTCCGACATATAGCTAGAATGATTT 59.185 37.037 20.25 3.88 0.00 2.17
79 80 7.814587 TGTCCGACATATAGCTAGAATGATTTG 59.185 37.037 20.25 4.74 0.00 2.32
115 124 2.837291 GCCTTGCACCCACCAACA 60.837 61.111 0.00 0.00 0.00 3.33
120 129 1.326213 TTGCACCCACCAACAGGTTG 61.326 55.000 5.19 5.19 40.13 3.77
121 130 1.454847 GCACCCACCAACAGGTTGA 60.455 57.895 13.47 0.00 42.93 3.18
122 131 0.827507 GCACCCACCAACAGGTTGAT 60.828 55.000 13.47 0.00 42.93 2.57
123 132 1.703411 CACCCACCAACAGGTTGATT 58.297 50.000 13.47 0.00 42.93 2.57
124 133 2.038659 CACCCACCAACAGGTTGATTT 58.961 47.619 13.47 0.00 42.93 2.17
125 134 2.038659 ACCCACCAACAGGTTGATTTG 58.961 47.619 13.47 7.38 42.93 2.32
126 135 2.315176 CCCACCAACAGGTTGATTTGA 58.685 47.619 13.47 0.00 42.93 2.69
127 136 2.899256 CCCACCAACAGGTTGATTTGAT 59.101 45.455 13.47 0.00 42.93 2.57
128 137 3.324556 CCCACCAACAGGTTGATTTGATT 59.675 43.478 13.47 0.00 42.93 2.57
129 138 4.309099 CCACCAACAGGTTGATTTGATTG 58.691 43.478 13.47 0.00 42.93 2.67
130 139 4.039004 CCACCAACAGGTTGATTTGATTGA 59.961 41.667 13.47 0.00 42.93 2.57
131 140 5.224888 CACCAACAGGTTGATTTGATTGAG 58.775 41.667 13.47 0.00 42.93 3.02
132 141 4.895297 ACCAACAGGTTGATTTGATTGAGT 59.105 37.500 13.47 0.00 42.93 3.41
133 142 5.221303 ACCAACAGGTTGATTTGATTGAGTG 60.221 40.000 13.47 0.00 42.93 3.51
134 143 5.224888 CAACAGGTTGATTTGATTGAGTGG 58.775 41.667 6.29 0.00 42.93 4.00
135 144 4.728772 ACAGGTTGATTTGATTGAGTGGA 58.271 39.130 0.00 0.00 0.00 4.02
136 145 5.327732 ACAGGTTGATTTGATTGAGTGGAT 58.672 37.500 0.00 0.00 0.00 3.41
137 146 5.184479 ACAGGTTGATTTGATTGAGTGGATG 59.816 40.000 0.00 0.00 0.00 3.51
138 147 4.159135 AGGTTGATTTGATTGAGTGGATGC 59.841 41.667 0.00 0.00 0.00 3.91
139 148 4.082081 GGTTGATTTGATTGAGTGGATGCA 60.082 41.667 0.00 0.00 0.00 3.96
140 149 5.472148 GTTGATTTGATTGAGTGGATGCAA 58.528 37.500 0.00 0.00 0.00 4.08
141 150 5.725325 TGATTTGATTGAGTGGATGCAAA 57.275 34.783 0.00 0.00 0.00 3.68
142 151 6.099159 TGATTTGATTGAGTGGATGCAAAA 57.901 33.333 0.00 0.00 0.00 2.44
143 152 6.703319 TGATTTGATTGAGTGGATGCAAAAT 58.297 32.000 0.00 0.00 0.00 1.82
144 153 7.838884 TGATTTGATTGAGTGGATGCAAAATA 58.161 30.769 0.00 0.00 0.00 1.40
145 154 7.760794 TGATTTGATTGAGTGGATGCAAAATAC 59.239 33.333 0.00 0.00 0.00 1.89
146 155 6.839124 TTGATTGAGTGGATGCAAAATACT 57.161 33.333 0.00 0.00 0.00 2.12
147 156 7.936496 TTGATTGAGTGGATGCAAAATACTA 57.064 32.000 0.00 0.00 0.00 1.82
148 157 7.320443 TGATTGAGTGGATGCAAAATACTAC 57.680 36.000 0.00 0.00 0.00 2.73
149 158 7.112122 TGATTGAGTGGATGCAAAATACTACT 58.888 34.615 0.00 0.00 0.00 2.57
150 159 6.985188 TTGAGTGGATGCAAAATACTACTC 57.015 37.500 13.28 13.28 39.87 2.59
151 160 5.428253 TGAGTGGATGCAAAATACTACTCC 58.572 41.667 15.62 6.35 39.12 3.85
152 161 4.781934 AGTGGATGCAAAATACTACTCCC 58.218 43.478 0.00 0.00 0.00 4.30
153 162 4.475016 AGTGGATGCAAAATACTACTCCCT 59.525 41.667 0.00 0.00 0.00 4.20
154 163 4.816925 GTGGATGCAAAATACTACTCCCTC 59.183 45.833 0.00 0.00 0.00 4.30
155 164 4.721776 TGGATGCAAAATACTACTCCCTCT 59.278 41.667 0.00 0.00 0.00 3.69
156 165 5.059833 GGATGCAAAATACTACTCCCTCTG 58.940 45.833 0.00 0.00 0.00 3.35
157 166 5.396884 GGATGCAAAATACTACTCCCTCTGT 60.397 44.000 0.00 0.00 0.00 3.41
158 167 5.086104 TGCAAAATACTACTCCCTCTGTC 57.914 43.478 0.00 0.00 0.00 3.51
159 168 4.081087 TGCAAAATACTACTCCCTCTGTCC 60.081 45.833 0.00 0.00 0.00 4.02
160 169 4.683671 GCAAAATACTACTCCCTCTGTCCC 60.684 50.000 0.00 0.00 0.00 4.46
161 170 4.348020 AAATACTACTCCCTCTGTCCCA 57.652 45.455 0.00 0.00 0.00 4.37
162 171 4.561254 AATACTACTCCCTCTGTCCCAT 57.439 45.455 0.00 0.00 0.00 4.00
163 172 5.681494 AATACTACTCCCTCTGTCCCATA 57.319 43.478 0.00 0.00 0.00 2.74
164 173 5.681494 ATACTACTCCCTCTGTCCCATAA 57.319 43.478 0.00 0.00 0.00 1.90
165 174 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
166 175 5.681494 ACTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
167 176 6.234404 ACTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
168 177 7.358255 ACTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
169 178 7.776745 ACTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
170 179 7.896496 ACTACTCCCTCTGTCCCATAATATAAG 59.104 40.741 0.00 0.00 0.00 1.73
171 180 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
172 181 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
173 182 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
174 183 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
175 184 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
176 185 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
177 186 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
178 187 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
179 188 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
206 215 5.391060 CTAGTATAGTGCCAAAAACGCTC 57.609 43.478 0.00 0.00 32.85 5.03
207 216 3.939066 AGTATAGTGCCAAAAACGCTCT 58.061 40.909 0.00 0.00 34.63 4.09
208 217 4.324267 AGTATAGTGCCAAAAACGCTCTT 58.676 39.130 0.00 0.00 32.65 2.85
209 218 5.484715 AGTATAGTGCCAAAAACGCTCTTA 58.515 37.500 0.00 0.00 32.65 2.10
210 219 6.113411 AGTATAGTGCCAAAAACGCTCTTAT 58.887 36.000 0.00 0.00 32.65 1.73
211 220 7.270047 AGTATAGTGCCAAAAACGCTCTTATA 58.730 34.615 0.00 0.00 32.65 0.98
212 221 6.995511 ATAGTGCCAAAAACGCTCTTATAA 57.004 33.333 0.00 0.00 32.65 0.98
213 222 5.897377 AGTGCCAAAAACGCTCTTATAAT 57.103 34.783 0.00 0.00 0.00 1.28
214 223 6.995511 AGTGCCAAAAACGCTCTTATAATA 57.004 33.333 0.00 0.00 0.00 0.98
215 224 7.568199 AGTGCCAAAAACGCTCTTATAATAT 57.432 32.000 0.00 0.00 0.00 1.28
216 225 7.417612 AGTGCCAAAAACGCTCTTATAATATG 58.582 34.615 0.00 0.00 0.00 1.78
217 226 7.282224 AGTGCCAAAAACGCTCTTATAATATGA 59.718 33.333 0.00 0.00 0.00 2.15
218 227 7.587757 GTGCCAAAAACGCTCTTATAATATGAG 59.412 37.037 0.00 0.00 34.20 2.90
219 228 7.497579 TGCCAAAAACGCTCTTATAATATGAGA 59.502 33.333 4.78 0.24 33.20 3.27
220 229 7.798982 GCCAAAAACGCTCTTATAATATGAGAC 59.201 37.037 4.78 0.00 33.20 3.36
221 230 8.004344 CCAAAAACGCTCTTATAATATGAGACG 58.996 37.037 11.96 11.96 36.53 4.18
222 231 7.639162 AAAACGCTCTTATAATATGAGACGG 57.361 36.000 15.38 4.91 35.72 4.79
223 232 6.570672 AACGCTCTTATAATATGAGACGGA 57.429 37.500 15.38 0.00 35.72 4.69
224 233 6.184580 ACGCTCTTATAATATGAGACGGAG 57.815 41.667 15.38 5.63 35.72 4.63
225 234 5.124138 ACGCTCTTATAATATGAGACGGAGG 59.876 44.000 15.38 0.58 35.72 4.30
226 235 5.449314 CGCTCTTATAATATGAGACGGAGGG 60.449 48.000 4.78 0.00 33.20 4.30
227 236 5.652891 GCTCTTATAATATGAGACGGAGGGA 59.347 44.000 4.78 0.00 33.20 4.20
228 237 6.183360 GCTCTTATAATATGAGACGGAGGGAG 60.183 46.154 4.78 0.00 33.20 4.30
229 238 6.791371 TCTTATAATATGAGACGGAGGGAGT 58.209 40.000 0.00 0.00 0.00 3.85
230 239 7.925622 TCTTATAATATGAGACGGAGGGAGTA 58.074 38.462 0.00 0.00 0.00 2.59
231 240 8.047911 TCTTATAATATGAGACGGAGGGAGTAG 58.952 40.741 0.00 0.00 0.00 2.57
232 241 4.456662 AATATGAGACGGAGGGAGTAGT 57.543 45.455 0.00 0.00 0.00 2.73
233 242 2.830651 ATGAGACGGAGGGAGTAGTT 57.169 50.000 0.00 0.00 0.00 2.24
280 289 8.816640 AATAGTTGATTTGATTGTTTGTGTCC 57.183 30.769 0.00 0.00 0.00 4.02
282 291 4.235939 TGATTTGATTGTTTGTGTCCGG 57.764 40.909 0.00 0.00 0.00 5.14
296 305 3.255888 TGTGTCCGGCATATAGCTAGAAG 59.744 47.826 0.00 0.00 44.79 2.85
304 313 6.344500 CGGCATATAGCTAGAAGGATTTGAT 58.656 40.000 0.00 0.00 44.79 2.57
305 314 6.820656 CGGCATATAGCTAGAAGGATTTGATT 59.179 38.462 0.00 0.00 44.79 2.57
306 315 7.335422 CGGCATATAGCTAGAAGGATTTGATTT 59.665 37.037 0.00 0.00 44.79 2.17
307 316 9.672673 GGCATATAGCTAGAAGGATTTGATTTA 57.327 33.333 0.00 0.00 44.79 1.40
350 359 5.499004 TGCAATTACCTTTCTCACCTACT 57.501 39.130 0.00 0.00 0.00 2.57
360 369 3.689872 TCTCACCTACTAATGGAGGCT 57.310 47.619 0.00 0.00 36.17 4.58
383 392 7.041098 GGCTCTTCAAAAGATTTGACTTGACTA 60.041 37.037 5.09 0.00 36.82 2.59
392 402 7.706281 AGATTTGACTTGACTAAGATATGCG 57.294 36.000 0.00 0.00 37.36 4.73
418 429 1.597461 GGGAGGGAAGACTTCACCG 59.403 63.158 13.98 0.00 31.94 4.94
442 453 4.873259 ACGAAAACCCCAAATTTCAGTTTG 59.127 37.500 9.37 0.00 38.50 2.93
469 480 7.639945 AGAGCTTGTTTCTAATGTTGTAACAC 58.360 34.615 0.00 0.00 42.51 3.32
574 906 2.719376 ACAGCGCCTGTGTTTCATT 58.281 47.368 2.29 0.00 43.63 2.57
576 908 1.535462 ACAGCGCCTGTGTTTCATTAC 59.465 47.619 2.29 0.00 43.63 1.89
577 909 0.796312 AGCGCCTGTGTTTCATTACG 59.204 50.000 2.29 0.00 0.00 3.18
628 4247 4.437239 AGATTGCCTGTAGAAGAATCGTG 58.563 43.478 0.00 0.00 0.00 4.35
650 4495 2.101582 CTGGACGGGTCTCTTCTTATGG 59.898 54.545 0.00 0.00 0.00 2.74
661 4506 6.325286 GGTCTCTTCTTATGGTCTTATCCACT 59.675 42.308 0.00 0.00 40.51 4.00
664 4509 6.202331 TCTTCTTATGGTCTTATCCACTGGA 58.798 40.000 0.00 0.00 40.51 3.86
719 4565 0.671781 GGATGGATTCCGCTGATCCG 60.672 60.000 4.50 0.00 37.29 4.18
730 4576 0.672889 GCTGATCCGCTCTGATCTGA 59.327 55.000 14.47 2.03 40.93 3.27
732 4578 0.665298 TGATCCGCTCTGATCTGACG 59.335 55.000 13.59 13.59 41.42 4.35
789 4635 3.419943 TGCATGCATCAAGTCAAGGTTA 58.580 40.909 18.46 0.00 0.00 2.85
797 4643 5.106673 GCATCAAGTCAAGGTTAGTTGGTAC 60.107 44.000 0.00 0.00 0.00 3.34
966 4812 5.063564 CCTGCCATTTCTAGTAGTTCGTTTC 59.936 44.000 0.00 0.00 0.00 2.78
967 4813 5.790593 TGCCATTTCTAGTAGTTCGTTTCT 58.209 37.500 0.00 0.00 0.00 2.52
968 4814 5.867716 TGCCATTTCTAGTAGTTCGTTTCTC 59.132 40.000 0.00 0.00 0.00 2.87
969 4815 6.100668 GCCATTTCTAGTAGTTCGTTTCTCT 58.899 40.000 0.00 0.00 0.00 3.10
970 4816 6.253942 GCCATTTCTAGTAGTTCGTTTCTCTC 59.746 42.308 0.00 0.00 0.00 3.20
1135 4993 4.500703 GGTACGTGATCAGAACGAAATG 57.499 45.455 10.77 0.00 43.68 2.32
1136 4994 3.306166 GGTACGTGATCAGAACGAAATGG 59.694 47.826 10.77 0.00 43.68 3.16
1137 4995 3.313012 ACGTGATCAGAACGAAATGGA 57.687 42.857 10.77 0.00 43.68 3.41
1138 4996 3.254060 ACGTGATCAGAACGAAATGGAG 58.746 45.455 10.77 0.00 43.68 3.86
1161 5019 0.317160 CATGCATGCATGTCCATCCC 59.683 55.000 40.30 9.65 46.20 3.85
1164 5022 1.461091 GCATGCATGTCCATCCCCTG 61.461 60.000 26.79 0.00 0.00 4.45
1724 5609 3.503363 GTGGCTCGTCATGCAGGC 61.503 66.667 0.00 5.95 35.76 4.85
1812 5697 3.918220 GCGGACATCAAGAGCGCG 61.918 66.667 0.00 0.00 0.00 6.86
1891 5794 2.143122 GCGTGTTGAAGGAGATGTTCA 58.857 47.619 0.00 0.00 31.98 3.18
1893 5796 3.932710 GCGTGTTGAAGGAGATGTTCATA 59.067 43.478 0.00 0.00 33.95 2.15
1980 5883 4.222847 GGGATCGAGGCCGTGGTC 62.223 72.222 0.00 0.00 37.05 4.02
2043 5946 1.741401 CAACAAGATCCTCGCGGCA 60.741 57.895 6.13 0.00 0.00 5.69
2049 5952 1.819632 GATCCTCGCGGCAACCATT 60.820 57.895 6.13 0.00 0.00 3.16
2064 5967 4.715523 ATTGGGGTGGGCGTGACG 62.716 66.667 0.00 0.00 0.00 4.35
2788 6894 3.554259 TTGTAGTAGCTGTCGTGAGTG 57.446 47.619 0.00 0.00 0.00 3.51
2816 6922 7.647715 TGACAAGAAATTTCCAAAACGATCTTC 59.352 33.333 14.61 0.00 0.00 2.87
2820 6926 7.588512 AGAAATTTCCAAAACGATCTTCAGAG 58.411 34.615 14.61 0.00 0.00 3.35
2863 6969 6.483307 TGGGAAATGTTTATATCTCGCTTCAG 59.517 38.462 0.00 0.00 0.00 3.02
2888 6997 2.217038 TGCTCCTTCGGTCTGCCTT 61.217 57.895 0.00 0.00 0.00 4.35
2898 7007 1.301677 GGTCTGCCTTGAAGCTTCGG 61.302 60.000 21.11 17.42 0.00 4.30
2939 7048 1.895231 GGCCCGTTCCGTCTGTTTT 60.895 57.895 0.00 0.00 0.00 2.43
2971 7080 0.604243 TCCATGGTGTTTCGTTCCGG 60.604 55.000 12.58 0.00 0.00 5.14
2993 8275 4.378459 GGTTCATTGAGTTTAGTTCGCTGG 60.378 45.833 0.00 0.00 0.00 4.85
2995 8277 3.007506 TCATTGAGTTTAGTTCGCTGGGA 59.992 43.478 0.00 0.00 0.00 4.37
2996 8278 3.478857 TTGAGTTTAGTTCGCTGGGAA 57.521 42.857 2.72 2.72 0.00 3.97
2999 8281 2.084546 AGTTTAGTTCGCTGGGAATGC 58.915 47.619 10.46 0.00 36.92 3.56
3000 8282 2.084546 GTTTAGTTCGCTGGGAATGCT 58.915 47.619 10.46 6.62 36.92 3.79
3003 8285 0.462759 AGTTCGCTGGGAATGCTAGC 60.463 55.000 8.10 8.10 36.92 3.42
3004 8286 0.462759 GTTCGCTGGGAATGCTAGCT 60.463 55.000 17.23 0.00 36.92 3.32
3005 8287 0.462581 TTCGCTGGGAATGCTAGCTG 60.463 55.000 17.23 2.46 35.36 4.24
3007 8289 1.153005 GCTGGGAATGCTAGCTGCT 60.153 57.895 17.23 7.57 43.37 4.24
3011 8293 1.144936 GGAATGCTAGCTGCTCGGT 59.855 57.895 17.23 0.00 43.37 4.69
3012 8294 0.462759 GGAATGCTAGCTGCTCGGTT 60.463 55.000 17.23 0.00 43.37 4.44
3013 8295 0.654683 GAATGCTAGCTGCTCGGTTG 59.345 55.000 17.23 0.00 43.37 3.77
3014 8296 0.250234 AATGCTAGCTGCTCGGTTGA 59.750 50.000 17.23 0.00 43.37 3.18
3015 8297 0.250234 ATGCTAGCTGCTCGGTTGAA 59.750 50.000 17.23 0.00 43.37 2.69
3016 8298 0.034756 TGCTAGCTGCTCGGTTGAAA 59.965 50.000 17.23 0.00 43.37 2.69
3017 8299 0.444260 GCTAGCTGCTCGGTTGAAAC 59.556 55.000 4.91 0.00 38.95 2.78
3018 8300 1.079503 CTAGCTGCTCGGTTGAAACC 58.920 55.000 4.91 1.88 45.76 3.27
3030 8312 4.322080 GGTTGAAACCTTTCCTTTCCAG 57.678 45.455 4.92 0.00 45.75 3.86
3031 8313 3.958147 GGTTGAAACCTTTCCTTTCCAGA 59.042 43.478 4.92 0.00 45.75 3.86
3033 8315 4.788925 TGAAACCTTTCCTTTCCAGAGA 57.211 40.909 0.00 0.00 36.36 3.10
3034 8316 5.324832 TGAAACCTTTCCTTTCCAGAGAT 57.675 39.130 0.00 0.00 36.36 2.75
3035 8317 5.705400 TGAAACCTTTCCTTTCCAGAGATT 58.295 37.500 0.00 0.00 36.36 2.40
3037 8319 6.942576 TGAAACCTTTCCTTTCCAGAGATTAG 59.057 38.462 0.00 0.00 36.36 1.73
3038 8320 6.704056 AACCTTTCCTTTCCAGAGATTAGA 57.296 37.500 0.00 0.00 0.00 2.10
3039 8321 6.306643 ACCTTTCCTTTCCAGAGATTAGAG 57.693 41.667 0.00 0.00 0.00 2.43
3040 8322 6.026186 ACCTTTCCTTTCCAGAGATTAGAGA 58.974 40.000 0.00 0.00 0.00 3.10
3042 8324 6.156083 CCTTTCCTTTCCAGAGATTAGAGACT 59.844 42.308 0.00 0.00 0.00 3.24
3043 8325 6.783708 TTCCTTTCCAGAGATTAGAGACTC 57.216 41.667 0.00 0.00 0.00 3.36
3044 8326 5.832221 TCCTTTCCAGAGATTAGAGACTCA 58.168 41.667 5.02 0.00 35.83 3.41
3045 8327 6.256819 TCCTTTCCAGAGATTAGAGACTCAA 58.743 40.000 5.02 0.00 35.83 3.02
3047 8329 7.041107 CCTTTCCAGAGATTAGAGACTCAAAG 58.959 42.308 5.02 2.00 35.83 2.77
3048 8330 7.310361 CCTTTCCAGAGATTAGAGACTCAAAGT 60.310 40.741 5.02 0.00 35.83 2.66
3049 8331 6.522625 TCCAGAGATTAGAGACTCAAAGTG 57.477 41.667 5.02 0.00 35.83 3.16
3050 8332 5.105554 TCCAGAGATTAGAGACTCAAAGTGC 60.106 44.000 5.02 0.00 35.83 4.40
3052 8334 4.461081 AGAGATTAGAGACTCAAAGTGCGT 59.539 41.667 5.02 0.00 35.83 5.24
3053 8335 5.047660 AGAGATTAGAGACTCAAAGTGCGTT 60.048 40.000 5.02 0.00 35.83 4.84
3054 8336 5.164954 AGATTAGAGACTCAAAGTGCGTTC 58.835 41.667 5.02 0.00 0.00 3.95
3055 8337 2.156343 AGAGACTCAAAGTGCGTTCC 57.844 50.000 5.02 0.00 0.00 3.62
3056 8338 1.149148 GAGACTCAAAGTGCGTTCCC 58.851 55.000 0.00 0.00 0.00 3.97
3057 8339 0.468226 AGACTCAAAGTGCGTTCCCA 59.532 50.000 0.00 0.00 0.00 4.37
3058 8340 1.072331 AGACTCAAAGTGCGTTCCCAT 59.928 47.619 0.00 0.00 0.00 4.00
3059 8341 1.464997 GACTCAAAGTGCGTTCCCATC 59.535 52.381 0.00 0.00 0.00 3.51
3060 8342 1.202758 ACTCAAAGTGCGTTCCCATCA 60.203 47.619 0.00 0.00 0.00 3.07
3062 8344 0.523072 CAAAGTGCGTTCCCATCAGG 59.477 55.000 0.00 0.00 0.00 3.86
3075 8357 3.325293 CCATCAGGGAGGATAATCACG 57.675 52.381 0.00 0.00 40.01 4.35
3076 8358 2.027745 CCATCAGGGAGGATAATCACGG 60.028 54.545 0.00 0.00 40.01 4.94
3077 8359 2.767644 TCAGGGAGGATAATCACGGA 57.232 50.000 0.00 0.00 0.00 4.69
3078 8360 2.317040 TCAGGGAGGATAATCACGGAC 58.683 52.381 0.00 0.00 0.00 4.79
3080 8362 2.434336 CAGGGAGGATAATCACGGACAA 59.566 50.000 0.00 0.00 0.00 3.18
3081 8363 3.071602 CAGGGAGGATAATCACGGACAAT 59.928 47.826 0.00 0.00 0.00 2.71
3082 8364 3.071602 AGGGAGGATAATCACGGACAATG 59.928 47.826 0.00 0.00 0.00 2.82
3083 8365 3.181454 GGGAGGATAATCACGGACAATGT 60.181 47.826 0.00 0.00 0.00 2.71
3084 8366 4.451900 GGAGGATAATCACGGACAATGTT 58.548 43.478 0.00 0.00 0.00 2.71
3086 8368 6.231211 GGAGGATAATCACGGACAATGTTAT 58.769 40.000 0.00 0.00 0.00 1.89
3087 8369 7.383687 GGAGGATAATCACGGACAATGTTATA 58.616 38.462 0.00 0.00 0.00 0.98
3088 8370 7.331193 GGAGGATAATCACGGACAATGTTATAC 59.669 40.741 0.00 0.00 0.00 1.47
3089 8371 7.963532 AGGATAATCACGGACAATGTTATACT 58.036 34.615 0.00 0.00 0.00 2.12
3090 8372 9.085645 AGGATAATCACGGACAATGTTATACTA 57.914 33.333 0.00 0.00 0.00 1.82
3091 8373 9.355215 GGATAATCACGGACAATGTTATACTAG 57.645 37.037 0.00 0.00 0.00 2.57
3092 8374 9.909644 GATAATCACGGACAATGTTATACTAGT 57.090 33.333 0.00 0.00 0.00 2.57
3093 8375 9.692749 ATAATCACGGACAATGTTATACTAGTG 57.307 33.333 5.39 0.00 0.00 2.74
3094 8376 5.898174 TCACGGACAATGTTATACTAGTGG 58.102 41.667 5.39 0.00 0.00 4.00
3095 8377 4.506654 CACGGACAATGTTATACTAGTGGC 59.493 45.833 5.39 0.00 0.00 5.01
3096 8378 4.404715 ACGGACAATGTTATACTAGTGGCT 59.595 41.667 5.39 0.00 0.00 4.75
3098 8380 6.097270 ACGGACAATGTTATACTAGTGGCTTA 59.903 38.462 5.39 0.00 0.00 3.09
3099 8381 7.152645 CGGACAATGTTATACTAGTGGCTTAT 58.847 38.462 5.39 0.00 0.00 1.73
3101 8383 8.148351 GGACAATGTTATACTAGTGGCTTATGA 58.852 37.037 5.39 0.00 0.00 2.15
3102 8384 9.542462 GACAATGTTATACTAGTGGCTTATGAA 57.458 33.333 5.39 0.00 0.00 2.57
3110 8392 6.791867 ACTAGTGGCTTATGAATGTCTACA 57.208 37.500 0.00 0.00 0.00 2.74
3112 8394 5.420725 AGTGGCTTATGAATGTCTACACA 57.579 39.130 0.00 0.00 36.78 3.72
3113 8395 5.178797 AGTGGCTTATGAATGTCTACACAC 58.821 41.667 0.00 0.00 34.48 3.82
3114 8396 4.032900 GTGGCTTATGAATGTCTACACACG 59.967 45.833 0.00 0.00 34.48 4.49
3115 8397 4.081917 TGGCTTATGAATGTCTACACACGA 60.082 41.667 0.00 0.00 34.48 4.35
3116 8398 5.050490 GGCTTATGAATGTCTACACACGAT 58.950 41.667 0.00 0.00 34.48 3.73
3117 8399 5.050769 GGCTTATGAATGTCTACACACGATG 60.051 44.000 0.00 0.00 34.48 3.84
3118 8400 5.748630 GCTTATGAATGTCTACACACGATGA 59.251 40.000 0.00 0.00 34.48 2.92
3119 8401 6.255670 GCTTATGAATGTCTACACACGATGAA 59.744 38.462 0.00 0.00 34.48 2.57
3120 8402 7.201522 GCTTATGAATGTCTACACACGATGAAA 60.202 37.037 0.00 0.00 34.48 2.69
3121 8403 8.541133 TTATGAATGTCTACACACGATGAAAA 57.459 30.769 0.00 0.00 34.48 2.29
3122 8404 6.852858 TGAATGTCTACACACGATGAAAAA 57.147 33.333 0.00 0.00 34.48 1.94
3123 8405 6.887368 TGAATGTCTACACACGATGAAAAAG 58.113 36.000 0.00 0.00 34.48 2.27
3124 8406 6.704050 TGAATGTCTACACACGATGAAAAAGA 59.296 34.615 0.00 0.00 34.48 2.52
3125 8407 6.712241 ATGTCTACACACGATGAAAAAGAG 57.288 37.500 0.00 0.00 34.48 2.85
3128 8410 6.420903 TGTCTACACACGATGAAAAAGAGAAG 59.579 38.462 0.00 0.00 0.00 2.85
3129 8411 5.926542 TCTACACACGATGAAAAAGAGAAGG 59.073 40.000 0.00 0.00 0.00 3.46
3130 8412 4.703897 ACACACGATGAAAAAGAGAAGGA 58.296 39.130 0.00 0.00 0.00 3.36
3131 8413 5.123227 ACACACGATGAAAAAGAGAAGGAA 58.877 37.500 0.00 0.00 0.00 3.36
3132 8414 5.588648 ACACACGATGAAAAAGAGAAGGAAA 59.411 36.000 0.00 0.00 0.00 3.13
3135 8417 6.318900 ACACGATGAAAAAGAGAAGGAAAAGT 59.681 34.615 0.00 0.00 0.00 2.66
3136 8418 7.497909 ACACGATGAAAAAGAGAAGGAAAAGTA 59.502 33.333 0.00 0.00 0.00 2.24
3138 8420 8.899771 ACGATGAAAAAGAGAAGGAAAAGTAAA 58.100 29.630 0.00 0.00 0.00 2.01
3139 8421 9.730420 CGATGAAAAAGAGAAGGAAAAGTAAAA 57.270 29.630 0.00 0.00 0.00 1.52
3145 8427 9.817809 AAAAGAGAAGGAAAAGTAAAATTGGTC 57.182 29.630 0.00 0.00 0.00 4.02
3146 8428 8.768501 AAGAGAAGGAAAAGTAAAATTGGTCT 57.231 30.769 0.00 0.00 0.00 3.85
3150 8432 9.588096 AGAAGGAAAAGTAAAATTGGTCTATGT 57.412 29.630 0.00 0.00 0.00 2.29
3153 8435 7.451566 AGGAAAAGTAAAATTGGTCTATGTGCT 59.548 33.333 0.00 0.00 0.00 4.40
3154 8436 7.542130 GGAAAAGTAAAATTGGTCTATGTGCTG 59.458 37.037 0.00 0.00 0.00 4.41
3155 8437 7.524717 AAAGTAAAATTGGTCTATGTGCTGT 57.475 32.000 0.00 0.00 0.00 4.40
3157 8439 6.237901 AGTAAAATTGGTCTATGTGCTGTGA 58.762 36.000 0.00 0.00 0.00 3.58
3159 8441 5.633830 AAATTGGTCTATGTGCTGTGAAG 57.366 39.130 0.00 0.00 0.00 3.02
3160 8442 2.099141 TGGTCTATGTGCTGTGAAGC 57.901 50.000 0.00 0.00 0.00 3.86
3161 8443 1.625315 TGGTCTATGTGCTGTGAAGCT 59.375 47.619 0.00 0.00 35.49 3.74
3162 8444 2.038952 TGGTCTATGTGCTGTGAAGCTT 59.961 45.455 0.00 0.00 35.49 3.74
3163 8445 2.417933 GGTCTATGTGCTGTGAAGCTTG 59.582 50.000 2.10 0.00 35.49 4.01
3165 8447 3.937706 GTCTATGTGCTGTGAAGCTTGAT 59.062 43.478 2.10 0.00 35.49 2.57
3166 8448 5.111989 GTCTATGTGCTGTGAAGCTTGATA 58.888 41.667 2.10 0.00 35.49 2.15
3167 8449 5.757320 GTCTATGTGCTGTGAAGCTTGATAT 59.243 40.000 2.10 0.00 35.49 1.63
3168 8450 4.895224 ATGTGCTGTGAAGCTTGATATG 57.105 40.909 2.10 0.00 35.49 1.78
3169 8451 2.421073 TGTGCTGTGAAGCTTGATATGC 59.579 45.455 2.10 2.08 35.49 3.14
3171 8453 3.066342 GTGCTGTGAAGCTTGATATGCAT 59.934 43.478 2.10 3.79 35.49 3.96
3172 8454 4.274214 GTGCTGTGAAGCTTGATATGCATA 59.726 41.667 9.27 9.27 35.49 3.14
3173 8455 4.883006 TGCTGTGAAGCTTGATATGCATAA 59.117 37.500 11.13 0.00 35.49 1.90
3174 8456 5.357596 TGCTGTGAAGCTTGATATGCATAAA 59.642 36.000 11.13 0.34 35.49 1.40
3175 8457 5.913514 GCTGTGAAGCTTGATATGCATAAAG 59.086 40.000 11.13 11.71 0.00 1.85
3176 8458 5.824429 TGTGAAGCTTGATATGCATAAAGC 58.176 37.500 25.70 25.70 45.78 3.51
3191 8473 6.525121 GCATAAAGCGTATGATAGTGTTGA 57.475 37.500 12.94 0.00 0.00 3.18
3194 8476 7.531871 GCATAAAGCGTATGATAGTGTTGAATG 59.468 37.037 12.94 0.00 0.00 2.67
3196 8478 4.380531 AGCGTATGATAGTGTTGAATGGG 58.619 43.478 0.00 0.00 0.00 4.00
3197 8479 3.498397 GCGTATGATAGTGTTGAATGGGG 59.502 47.826 0.00 0.00 0.00 4.96
3198 8480 4.703897 CGTATGATAGTGTTGAATGGGGT 58.296 43.478 0.00 0.00 0.00 4.95
3200 8482 5.588648 CGTATGATAGTGTTGAATGGGGTTT 59.411 40.000 0.00 0.00 0.00 3.27
3202 8484 6.933514 ATGATAGTGTTGAATGGGGTTTTT 57.066 33.333 0.00 0.00 0.00 1.94
3225 8507 3.520187 GCAATCCTTGGCAAGTTGG 57.480 52.632 24.57 11.79 0.00 3.77
3229 8511 0.190815 ATCCTTGGCAAGTTGGGGTT 59.809 50.000 24.57 3.55 0.00 4.11
3230 8512 0.469144 TCCTTGGCAAGTTGGGGTTC 60.469 55.000 24.57 0.00 0.00 3.62
3232 8514 0.821711 CTTGGCAAGTTGGGGTTCGA 60.822 55.000 19.07 0.00 0.00 3.71
3233 8515 0.178975 TTGGCAAGTTGGGGTTCGAT 60.179 50.000 4.75 0.00 0.00 3.59
3235 8517 0.608035 GGCAAGTTGGGGTTCGATGA 60.608 55.000 4.75 0.00 0.00 2.92
3236 8518 0.804989 GCAAGTTGGGGTTCGATGAG 59.195 55.000 4.75 0.00 0.00 2.90
3238 8520 0.673644 AAGTTGGGGTTCGATGAGCG 60.674 55.000 0.00 0.00 42.69 5.03
3248 8530 2.888834 TCGATGAGCGATGAATTGGA 57.111 45.000 0.00 0.00 45.59 3.53
3249 8531 2.473816 TCGATGAGCGATGAATTGGAC 58.526 47.619 0.00 0.00 45.59 4.02
3250 8532 2.101415 TCGATGAGCGATGAATTGGACT 59.899 45.455 0.00 0.00 45.59 3.85
3251 8533 3.317993 TCGATGAGCGATGAATTGGACTA 59.682 43.478 0.00 0.00 45.59 2.59
3252 8534 4.051237 CGATGAGCGATGAATTGGACTAA 58.949 43.478 0.00 0.00 44.57 2.24
3255 8537 5.022282 TGAGCGATGAATTGGACTAATCA 57.978 39.130 0.00 0.00 0.00 2.57
3256 8538 5.614308 TGAGCGATGAATTGGACTAATCAT 58.386 37.500 0.00 0.00 0.00 2.45
3259 8541 5.468072 AGCGATGAATTGGACTAATCATGTC 59.532 40.000 0.00 0.00 0.00 3.06
3260 8542 5.237127 GCGATGAATTGGACTAATCATGTCA 59.763 40.000 0.00 0.00 36.26 3.58
3261 8543 6.072838 GCGATGAATTGGACTAATCATGTCAT 60.073 38.462 0.00 0.00 36.26 3.06
3262 8544 7.118245 GCGATGAATTGGACTAATCATGTCATA 59.882 37.037 0.00 0.00 36.26 2.15
3263 8545 9.159364 CGATGAATTGGACTAATCATGTCATAT 57.841 33.333 0.00 0.00 36.26 1.78
3266 8548 9.059260 TGAATTGGACTAATCATGTCATATGTG 57.941 33.333 1.90 0.00 36.26 3.21
3280 8562 4.777463 TCATATGTGACCTCTGTCGAGTA 58.223 43.478 1.90 0.00 44.86 2.59
3281 8563 5.377478 TCATATGTGACCTCTGTCGAGTAT 58.623 41.667 1.90 0.00 44.86 2.12
3282 8564 6.531021 TCATATGTGACCTCTGTCGAGTATA 58.469 40.000 1.90 0.00 44.86 1.47
3283 8565 6.996282 TCATATGTGACCTCTGTCGAGTATAA 59.004 38.462 1.90 0.00 44.86 0.98
3284 8566 5.759506 ATGTGACCTCTGTCGAGTATAAG 57.240 43.478 0.00 0.00 44.86 1.73
3285 8567 3.945921 TGTGACCTCTGTCGAGTATAAGG 59.054 47.826 0.00 0.00 44.86 2.69
3286 8568 3.946558 GTGACCTCTGTCGAGTATAAGGT 59.053 47.826 4.98 4.98 44.86 3.50
3287 8569 4.816786 GACCTCTGTCGAGTATAAGGTC 57.183 50.000 13.45 13.45 44.16 3.85
3288 8570 3.553904 ACCTCTGTCGAGTATAAGGTCC 58.446 50.000 0.00 0.00 35.43 4.46
3289 8571 2.548904 CCTCTGTCGAGTATAAGGTCCG 59.451 54.545 0.00 0.00 35.43 4.79
3290 8572 2.548904 CTCTGTCGAGTATAAGGTCCGG 59.451 54.545 0.00 0.00 32.47 5.14
3291 8573 2.092753 TCTGTCGAGTATAAGGTCCGGT 60.093 50.000 0.00 0.00 0.00 5.28
3292 8574 2.686915 CTGTCGAGTATAAGGTCCGGTT 59.313 50.000 0.00 0.00 0.00 4.44
3293 8575 2.684881 TGTCGAGTATAAGGTCCGGTTC 59.315 50.000 0.00 0.00 0.00 3.62
3294 8576 2.684881 GTCGAGTATAAGGTCCGGTTCA 59.315 50.000 0.00 0.00 0.00 3.18
3295 8577 3.129287 GTCGAGTATAAGGTCCGGTTCAA 59.871 47.826 0.00 0.00 0.00 2.69
3296 8578 3.129287 TCGAGTATAAGGTCCGGTTCAAC 59.871 47.826 0.00 0.00 0.00 3.18
3297 8579 3.129988 CGAGTATAAGGTCCGGTTCAACT 59.870 47.826 0.00 0.00 0.00 3.16
3298 8580 4.680702 GAGTATAAGGTCCGGTTCAACTC 58.319 47.826 0.00 3.49 0.00 3.01
3299 8581 4.351127 AGTATAAGGTCCGGTTCAACTCT 58.649 43.478 0.00 0.00 0.00 3.24
3300 8582 5.513233 AGTATAAGGTCCGGTTCAACTCTA 58.487 41.667 0.00 0.00 0.00 2.43
3303 8585 3.611766 AGGTCCGGTTCAACTCTAATG 57.388 47.619 0.00 0.00 0.00 1.90
3304 8586 3.170717 AGGTCCGGTTCAACTCTAATGA 58.829 45.455 0.00 0.00 0.00 2.57
3305 8587 3.581332 AGGTCCGGTTCAACTCTAATGAA 59.419 43.478 0.00 0.00 34.56 2.57
3306 8588 4.041198 AGGTCCGGTTCAACTCTAATGAAA 59.959 41.667 0.00 0.00 38.44 2.69
3308 8590 4.753107 GTCCGGTTCAACTCTAATGAAACA 59.247 41.667 0.00 0.00 43.18 2.83
3309 8591 4.994852 TCCGGTTCAACTCTAATGAAACAG 59.005 41.667 0.00 0.00 43.18 3.16
3310 8592 4.994852 CCGGTTCAACTCTAATGAAACAGA 59.005 41.667 0.00 0.00 43.18 3.41
3311 8593 5.643777 CCGGTTCAACTCTAATGAAACAGAT 59.356 40.000 0.00 0.00 43.18 2.90
3312 8594 6.149474 CCGGTTCAACTCTAATGAAACAGATT 59.851 38.462 0.00 0.00 43.18 2.40
3313 8595 7.237173 CGGTTCAACTCTAATGAAACAGATTC 58.763 38.462 5.30 0.00 43.18 2.52
3314 8596 7.237173 GGTTCAACTCTAATGAAACAGATTCG 58.763 38.462 0.00 0.00 42.68 3.34
3315 8597 7.095187 GGTTCAACTCTAATGAAACAGATTCGT 60.095 37.037 0.00 0.00 42.68 3.85
3316 8598 7.962964 TCAACTCTAATGAAACAGATTCGTT 57.037 32.000 3.59 3.59 46.49 3.85
3317 8599 8.378172 TCAACTCTAATGAAACAGATTCGTTT 57.622 30.769 3.41 6.40 43.21 3.60
3318 8600 8.282592 TCAACTCTAATGAAACAGATTCGTTTG 58.717 33.333 3.41 2.56 43.21 2.93
3322 8604 7.581476 TCTAATGAAACAGATTCGTTTGTTCC 58.419 34.615 3.41 0.00 43.21 3.62
3324 8606 7.504924 AATGAAACAGATTCGTTTGTTCCTA 57.495 32.000 10.05 0.00 43.21 2.94
3575 8857 2.898729 TCTTGCTATGTGCTAGGAGC 57.101 50.000 0.00 0.00 43.12 4.70
3597 8879 2.420058 GGGGGAGGAATACAAGTGTG 57.580 55.000 0.00 0.00 0.00 3.82
3598 8880 1.633945 GGGGGAGGAATACAAGTGTGT 59.366 52.381 0.00 0.00 42.09 3.72
3599 8881 2.355818 GGGGGAGGAATACAAGTGTGTC 60.356 54.545 0.00 0.00 39.30 3.67
3600 8882 2.618053 GGGAGGAATACAAGTGTGTCG 58.382 52.381 0.00 0.00 39.30 4.35
3601 8883 2.028385 GGGAGGAATACAAGTGTGTCGT 60.028 50.000 0.00 0.00 39.30 4.34
3602 8884 2.993899 GGAGGAATACAAGTGTGTCGTG 59.006 50.000 0.00 0.00 39.30 4.35
3603 8885 3.305813 GGAGGAATACAAGTGTGTCGTGA 60.306 47.826 0.00 0.00 39.30 4.35
3604 8886 4.495422 GAGGAATACAAGTGTGTCGTGAT 58.505 43.478 0.00 0.00 39.30 3.06
3605 8887 4.894784 AGGAATACAAGTGTGTCGTGATT 58.105 39.130 0.00 0.00 39.30 2.57
3606 8888 4.929808 AGGAATACAAGTGTGTCGTGATTC 59.070 41.667 0.00 0.00 39.30 2.52
3607 8889 4.092968 GGAATACAAGTGTGTCGTGATTCC 59.907 45.833 5.91 5.91 39.30 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 6.040209 AGGCAATTGCATTAACTCAATTCA 57.960 33.333 30.32 0.00 39.92 2.57
79 80 6.768078 CAAGGCAATTGCATTAACTCAATTC 58.232 36.000 27.87 8.06 43.72 2.17
115 124 4.159135 GCATCCACTCAATCAAATCAACCT 59.841 41.667 0.00 0.00 0.00 3.50
120 129 7.977853 AGTATTTTGCATCCACTCAATCAAATC 59.022 33.333 0.00 0.00 0.00 2.17
121 130 7.844009 AGTATTTTGCATCCACTCAATCAAAT 58.156 30.769 0.00 0.00 0.00 2.32
122 131 7.230849 AGTATTTTGCATCCACTCAATCAAA 57.769 32.000 0.00 0.00 0.00 2.69
123 132 6.839124 AGTATTTTGCATCCACTCAATCAA 57.161 33.333 0.00 0.00 0.00 2.57
124 133 7.112122 AGTAGTATTTTGCATCCACTCAATCA 58.888 34.615 0.00 0.00 0.00 2.57
125 134 7.254932 GGAGTAGTATTTTGCATCCACTCAATC 60.255 40.741 0.00 0.00 34.27 2.67
126 135 6.543831 GGAGTAGTATTTTGCATCCACTCAAT 59.456 38.462 0.00 0.00 34.27 2.57
127 136 5.880332 GGAGTAGTATTTTGCATCCACTCAA 59.120 40.000 0.00 0.00 34.27 3.02
128 137 5.428253 GGAGTAGTATTTTGCATCCACTCA 58.572 41.667 0.00 0.00 34.27 3.41
129 138 4.816925 GGGAGTAGTATTTTGCATCCACTC 59.183 45.833 0.00 0.00 0.00 3.51
130 139 4.475016 AGGGAGTAGTATTTTGCATCCACT 59.525 41.667 0.00 0.00 0.00 4.00
131 140 4.781934 AGGGAGTAGTATTTTGCATCCAC 58.218 43.478 0.00 0.00 0.00 4.02
132 141 4.721776 AGAGGGAGTAGTATTTTGCATCCA 59.278 41.667 0.00 0.00 0.00 3.41
133 142 5.059833 CAGAGGGAGTAGTATTTTGCATCC 58.940 45.833 0.00 0.00 0.00 3.51
134 143 5.675538 ACAGAGGGAGTAGTATTTTGCATC 58.324 41.667 0.00 0.00 0.00 3.91
135 144 5.396884 GGACAGAGGGAGTAGTATTTTGCAT 60.397 44.000 0.00 0.00 0.00 3.96
136 145 4.081087 GGACAGAGGGAGTAGTATTTTGCA 60.081 45.833 0.00 0.00 0.00 4.08
137 146 4.443621 GGACAGAGGGAGTAGTATTTTGC 58.556 47.826 0.00 0.00 0.00 3.68
138 147 4.469945 TGGGACAGAGGGAGTAGTATTTTG 59.530 45.833 0.00 0.00 0.00 2.44
139 148 4.695606 TGGGACAGAGGGAGTAGTATTTT 58.304 43.478 0.00 0.00 0.00 1.82
140 149 4.348020 TGGGACAGAGGGAGTAGTATTT 57.652 45.455 0.00 0.00 0.00 1.40
183 192 4.828829 AGCGTTTTTGGCACTATACTAGT 58.171 39.130 0.00 0.00 40.28 2.57
184 193 5.109903 AGAGCGTTTTTGGCACTATACTAG 58.890 41.667 0.00 0.00 29.39 2.57
185 194 5.080969 AGAGCGTTTTTGGCACTATACTA 57.919 39.130 0.00 0.00 29.39 1.82
186 195 3.939066 AGAGCGTTTTTGGCACTATACT 58.061 40.909 0.00 0.00 29.39 2.12
187 196 4.680171 AAGAGCGTTTTTGGCACTATAC 57.320 40.909 0.00 0.00 31.01 1.47
188 197 8.671384 ATTATAAGAGCGTTTTTGGCACTATA 57.329 30.769 0.00 0.00 31.01 1.31
189 198 6.995511 TTATAAGAGCGTTTTTGGCACTAT 57.004 33.333 0.00 0.00 31.01 2.12
190 199 6.995511 ATTATAAGAGCGTTTTTGGCACTA 57.004 33.333 0.00 0.00 31.01 2.74
191 200 5.897377 ATTATAAGAGCGTTTTTGGCACT 57.103 34.783 0.00 0.00 32.60 4.40
192 201 7.414436 TCATATTATAAGAGCGTTTTTGGCAC 58.586 34.615 0.00 0.00 0.00 5.01
193 202 7.497579 TCTCATATTATAAGAGCGTTTTTGGCA 59.502 33.333 0.10 0.00 0.00 4.92
194 203 7.798982 GTCTCATATTATAAGAGCGTTTTTGGC 59.201 37.037 0.10 0.00 0.00 4.52
195 204 8.004344 CGTCTCATATTATAAGAGCGTTTTTGG 58.996 37.037 10.61 0.00 0.00 3.28
196 205 8.004344 CCGTCTCATATTATAAGAGCGTTTTTG 58.996 37.037 14.64 2.86 31.69 2.44
197 206 7.924412 TCCGTCTCATATTATAAGAGCGTTTTT 59.076 33.333 14.64 0.00 31.69 1.94
198 207 7.431249 TCCGTCTCATATTATAAGAGCGTTTT 58.569 34.615 14.64 0.00 31.69 2.43
199 208 6.978338 TCCGTCTCATATTATAAGAGCGTTT 58.022 36.000 14.64 0.00 31.69 3.60
200 209 6.349445 CCTCCGTCTCATATTATAAGAGCGTT 60.349 42.308 14.64 0.00 31.69 4.84
201 210 5.124138 CCTCCGTCTCATATTATAAGAGCGT 59.876 44.000 14.64 0.00 31.69 5.07
202 211 5.449314 CCCTCCGTCTCATATTATAAGAGCG 60.449 48.000 11.35 11.35 0.00 5.03
203 212 5.652891 TCCCTCCGTCTCATATTATAAGAGC 59.347 44.000 0.10 0.00 0.00 4.09
204 213 6.887545 ACTCCCTCCGTCTCATATTATAAGAG 59.112 42.308 0.00 0.00 0.00 2.85
205 214 6.791371 ACTCCCTCCGTCTCATATTATAAGA 58.209 40.000 0.00 0.00 0.00 2.10
206 215 7.830201 ACTACTCCCTCCGTCTCATATTATAAG 59.170 40.741 0.00 0.00 0.00 1.73
207 216 7.696981 ACTACTCCCTCCGTCTCATATTATAA 58.303 38.462 0.00 0.00 0.00 0.98
208 217 7.268212 ACTACTCCCTCCGTCTCATATTATA 57.732 40.000 0.00 0.00 0.00 0.98
209 218 6.142259 ACTACTCCCTCCGTCTCATATTAT 57.858 41.667 0.00 0.00 0.00 1.28
210 219 5.579753 ACTACTCCCTCCGTCTCATATTA 57.420 43.478 0.00 0.00 0.00 0.98
211 220 4.456662 ACTACTCCCTCCGTCTCATATT 57.543 45.455 0.00 0.00 0.00 1.28
212 221 4.141228 TCAACTACTCCCTCCGTCTCATAT 60.141 45.833 0.00 0.00 0.00 1.78
213 222 3.201487 TCAACTACTCCCTCCGTCTCATA 59.799 47.826 0.00 0.00 0.00 2.15
214 223 2.025226 TCAACTACTCCCTCCGTCTCAT 60.025 50.000 0.00 0.00 0.00 2.90
215 224 1.353358 TCAACTACTCCCTCCGTCTCA 59.647 52.381 0.00 0.00 0.00 3.27
216 225 2.125773 TCAACTACTCCCTCCGTCTC 57.874 55.000 0.00 0.00 0.00 3.36
217 226 2.830651 ATCAACTACTCCCTCCGTCT 57.169 50.000 0.00 0.00 0.00 4.18
218 227 3.194968 TCAAATCAACTACTCCCTCCGTC 59.805 47.826 0.00 0.00 0.00 4.79
219 228 3.170717 TCAAATCAACTACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
220 229 3.887621 TCAAATCAACTACTCCCTCCG 57.112 47.619 0.00 0.00 0.00 4.63
221 230 5.745227 TCAATCAAATCAACTACTCCCTCC 58.255 41.667 0.00 0.00 0.00 4.30
222 231 6.314896 CACTCAATCAAATCAACTACTCCCTC 59.685 42.308 0.00 0.00 0.00 4.30
223 232 6.176183 CACTCAATCAAATCAACTACTCCCT 58.824 40.000 0.00 0.00 0.00 4.20
224 233 5.355350 CCACTCAATCAAATCAACTACTCCC 59.645 44.000 0.00 0.00 0.00 4.30
225 234 6.173339 TCCACTCAATCAAATCAACTACTCC 58.827 40.000 0.00 0.00 0.00 3.85
226 235 7.678218 GCATCCACTCAATCAAATCAACTACTC 60.678 40.741 0.00 0.00 0.00 2.59
227 236 6.094603 GCATCCACTCAATCAAATCAACTACT 59.905 38.462 0.00 0.00 0.00 2.57
228 237 6.127925 TGCATCCACTCAATCAAATCAACTAC 60.128 38.462 0.00 0.00 0.00 2.73
229 238 5.945191 TGCATCCACTCAATCAAATCAACTA 59.055 36.000 0.00 0.00 0.00 2.24
230 239 4.768448 TGCATCCACTCAATCAAATCAACT 59.232 37.500 0.00 0.00 0.00 3.16
231 240 5.063180 TGCATCCACTCAATCAAATCAAC 57.937 39.130 0.00 0.00 0.00 3.18
232 241 5.725325 TTGCATCCACTCAATCAAATCAA 57.275 34.783 0.00 0.00 0.00 2.57
233 242 5.725325 TTTGCATCCACTCAATCAAATCA 57.275 34.783 0.00 0.00 0.00 2.57
274 283 2.871453 TCTAGCTATATGCCGGACACA 58.129 47.619 5.05 0.00 44.23 3.72
280 289 5.724328 TCAAATCCTTCTAGCTATATGCCG 58.276 41.667 0.00 0.00 44.23 5.69
307 316 9.715121 ATTGCATTAACTCAATCAAGTCAAATT 57.285 25.926 0.00 0.00 0.00 1.82
308 317 9.715121 AATTGCATTAACTCAATCAAGTCAAAT 57.285 25.926 0.00 0.00 32.27 2.32
350 359 6.947733 TCAAATCTTTTGAAGAGCCTCCATTA 59.052 34.615 0.37 0.00 41.61 1.90
360 369 9.613428 TCTTAGTCAAGTCAAATCTTTTGAAGA 57.387 29.630 4.37 1.82 36.14 2.87
383 392 1.445942 CCCACGTCCCGCATATCTT 59.554 57.895 0.00 0.00 0.00 2.40
392 402 3.400054 CTTCCCTCCCCACGTCCC 61.400 72.222 0.00 0.00 0.00 4.46
418 429 4.316205 ACTGAAATTTGGGGTTTTCGTC 57.684 40.909 0.00 0.00 35.15 4.20
442 453 5.948992 ACAACATTAGAAACAAGCTCTCC 57.051 39.130 0.00 0.00 0.00 3.71
469 480 3.002656 AGCTGTTCATCGTCACAAACTTG 59.997 43.478 0.00 0.00 0.00 3.16
487 819 4.806247 GGTACACTAGAAGCATTACAGCTG 59.194 45.833 13.48 13.48 45.89 4.24
574 906 4.771903 TGGCATCCAGCTTTATTAACGTA 58.228 39.130 0.00 0.00 44.79 3.57
576 908 4.275689 TGATGGCATCCAGCTTTATTAACG 59.724 41.667 23.92 0.00 41.01 3.18
577 909 5.772825 TGATGGCATCCAGCTTTATTAAC 57.227 39.130 23.92 0.00 41.01 2.01
628 4247 1.183549 TAAGAAGAGACCCGTCCAGC 58.816 55.000 0.00 0.00 0.00 4.85
650 4495 7.420800 CAAAATAAGCATCCAGTGGATAAGAC 58.579 38.462 24.40 13.75 40.98 3.01
661 4506 4.329638 TTCCTCCCAAAATAAGCATCCA 57.670 40.909 0.00 0.00 0.00 3.41
664 4509 5.583932 AGTCTTTCCTCCCAAAATAAGCAT 58.416 37.500 0.00 0.00 0.00 3.79
719 4565 1.427592 GCCTTGCGTCAGATCAGAGC 61.428 60.000 0.00 0.00 0.00 4.09
730 4576 1.384525 TTTACTGTGTTGCCTTGCGT 58.615 45.000 0.00 0.00 0.00 5.24
732 4578 3.920412 GCTAATTTACTGTGTTGCCTTGC 59.080 43.478 0.00 0.00 0.00 4.01
797 4643 0.764369 TCTCGGGATTCAGATGGGGG 60.764 60.000 0.00 0.00 0.00 5.40
940 4786 4.708421 ACGAACTACTAGAAATGGCAGGTA 59.292 41.667 0.00 0.00 0.00 3.08
966 4812 2.430694 TCCGAGTCAGAGAGAGAGAGAG 59.569 54.545 0.00 0.00 0.00 3.20
967 4813 2.430694 CTCCGAGTCAGAGAGAGAGAGA 59.569 54.545 0.00 0.00 32.86 3.10
968 4814 2.483714 CCTCCGAGTCAGAGAGAGAGAG 60.484 59.091 4.86 0.00 32.86 3.20
969 4815 1.484653 CCTCCGAGTCAGAGAGAGAGA 59.515 57.143 4.86 0.00 32.86 3.10
970 4816 1.475034 CCCTCCGAGTCAGAGAGAGAG 60.475 61.905 4.86 0.00 32.86 3.20
1161 5019 7.116948 CACATCTAACTTCACTTACAGAACAGG 59.883 40.741 0.00 0.00 0.00 4.00
1164 5022 7.652105 TCACACATCTAACTTCACTTACAGAAC 59.348 37.037 0.00 0.00 0.00 3.01
1891 5794 3.830192 GGTCGGCGTCGGGTGTAT 61.830 66.667 10.62 0.00 36.95 2.29
1980 5883 3.214250 GATCCGCGGGCTGTAGAGG 62.214 68.421 27.83 0.00 0.00 3.69
2064 5967 2.345641 CGTCATGATGAACACCGTCTTC 59.654 50.000 9.46 0.00 0.00 2.87
2508 6411 1.841103 GATCTCCTCCAGGGGCCTC 60.841 68.421 0.84 0.00 35.00 4.70
2651 6554 1.447838 ACTACGGCCATGCGAAGTG 60.448 57.895 2.24 0.00 0.00 3.16
2696 6802 8.735315 TGCAGCACTATTTGTAATAAAAAGCTA 58.265 29.630 0.00 0.00 0.00 3.32
2697 6803 7.542130 GTGCAGCACTATTTGTAATAAAAAGCT 59.458 33.333 18.92 0.00 0.00 3.74
2698 6804 7.542130 AGTGCAGCACTATTTGTAATAAAAAGC 59.458 33.333 27.22 0.00 43.46 3.51
2699 6805 8.970691 AGTGCAGCACTATTTGTAATAAAAAG 57.029 30.769 27.22 0.00 43.46 2.27
2700 6806 9.757227 AAAGTGCAGCACTATTTGTAATAAAAA 57.243 25.926 28.48 0.00 44.62 1.94
2788 6894 6.879188 TCGTTTTGGAAATTTCTTGTCAAC 57.121 33.333 17.42 11.79 0.00 3.18
2816 6922 7.342799 TCCCATAAAATTCCCATTCTTTCTCTG 59.657 37.037 0.00 0.00 0.00 3.35
2820 6926 9.112725 CATTTCCCATAAAATTCCCATTCTTTC 57.887 33.333 0.00 0.00 0.00 2.62
2857 6963 0.888285 AGGAGCACTTGCACTGAAGC 60.888 55.000 3.62 0.00 45.16 3.86
2898 7007 2.202892 GTAGCTACAGTGCGGGGC 60.203 66.667 19.15 0.00 38.13 5.80
2946 7055 2.436417 ACGAAACACCATGGATGAAGG 58.564 47.619 21.47 5.89 0.00 3.46
2971 7080 4.378459 CCCAGCGAACTAAACTCAATGAAC 60.378 45.833 0.00 0.00 0.00 3.18
2999 8281 1.079503 GGTTTCAACCGAGCAGCTAG 58.920 55.000 0.00 0.00 39.66 3.42
3000 8282 3.226884 GGTTTCAACCGAGCAGCTA 57.773 52.632 0.00 0.00 39.66 3.32
3011 8293 5.124036 TCTCTGGAAAGGAAAGGTTTCAA 57.876 39.130 4.89 0.00 38.92 2.69
3012 8294 4.788925 TCTCTGGAAAGGAAAGGTTTCA 57.211 40.909 4.89 0.00 38.92 2.69
3013 8295 7.168905 TCTAATCTCTGGAAAGGAAAGGTTTC 58.831 38.462 0.00 0.00 36.46 2.78
3014 8296 7.017651 TCTCTAATCTCTGGAAAGGAAAGGTTT 59.982 37.037 0.00 0.00 0.00 3.27
3015 8297 6.502158 TCTCTAATCTCTGGAAAGGAAAGGTT 59.498 38.462 0.00 0.00 0.00 3.50
3016 8298 6.026186 TCTCTAATCTCTGGAAAGGAAAGGT 58.974 40.000 0.00 0.00 0.00 3.50
3017 8299 6.156083 AGTCTCTAATCTCTGGAAAGGAAAGG 59.844 42.308 0.00 0.00 0.00 3.11
3018 8300 7.093552 TGAGTCTCTAATCTCTGGAAAGGAAAG 60.094 40.741 0.65 0.00 0.00 2.62
3019 8301 6.726299 TGAGTCTCTAATCTCTGGAAAGGAAA 59.274 38.462 0.65 0.00 0.00 3.13
3021 8303 5.832221 TGAGTCTCTAATCTCTGGAAAGGA 58.168 41.667 0.65 0.00 0.00 3.36
3022 8304 6.537453 TTGAGTCTCTAATCTCTGGAAAGG 57.463 41.667 0.65 0.00 0.00 3.11
3025 8307 6.573289 GCACTTTGAGTCTCTAATCTCTGGAA 60.573 42.308 0.65 0.00 0.00 3.53
3026 8308 5.105554 GCACTTTGAGTCTCTAATCTCTGGA 60.106 44.000 0.65 0.00 0.00 3.86
3027 8309 5.108517 GCACTTTGAGTCTCTAATCTCTGG 58.891 45.833 0.65 0.00 0.00 3.86
3028 8310 4.797868 CGCACTTTGAGTCTCTAATCTCTG 59.202 45.833 0.65 0.00 0.00 3.35
3029 8311 4.461081 ACGCACTTTGAGTCTCTAATCTCT 59.539 41.667 0.65 0.00 0.00 3.10
3030 8312 4.739195 ACGCACTTTGAGTCTCTAATCTC 58.261 43.478 0.65 0.00 0.00 2.75
3031 8313 4.792521 ACGCACTTTGAGTCTCTAATCT 57.207 40.909 0.65 0.00 0.00 2.40
3033 8315 4.246458 GGAACGCACTTTGAGTCTCTAAT 58.754 43.478 0.65 0.00 27.87 1.73
3034 8316 3.554337 GGGAACGCACTTTGAGTCTCTAA 60.554 47.826 0.65 0.00 27.87 2.10
3035 8317 2.029290 GGGAACGCACTTTGAGTCTCTA 60.029 50.000 0.65 0.00 27.87 2.43
3037 8319 1.149148 GGGAACGCACTTTGAGTCTC 58.851 55.000 0.00 0.00 27.87 3.36
3038 8320 0.468226 TGGGAACGCACTTTGAGTCT 59.532 50.000 0.00 0.00 27.87 3.24
3039 8321 1.464997 GATGGGAACGCACTTTGAGTC 59.535 52.381 0.00 0.00 27.87 3.36
3040 8322 1.202758 TGATGGGAACGCACTTTGAGT 60.203 47.619 0.00 0.00 29.66 3.41
3042 8324 1.522668 CTGATGGGAACGCACTTTGA 58.477 50.000 0.00 0.00 0.00 2.69
3043 8325 0.523072 CCTGATGGGAACGCACTTTG 59.477 55.000 0.00 0.00 37.23 2.77
3044 8326 2.946947 CCTGATGGGAACGCACTTT 58.053 52.632 0.00 0.00 37.23 2.66
3045 8327 4.722193 CCTGATGGGAACGCACTT 57.278 55.556 0.00 0.00 37.23 3.16
3055 8337 2.027745 CCGTGATTATCCTCCCTGATGG 60.028 54.545 0.00 0.00 0.00 3.51
3056 8338 2.899900 TCCGTGATTATCCTCCCTGATG 59.100 50.000 0.00 0.00 0.00 3.07
3057 8339 2.900546 GTCCGTGATTATCCTCCCTGAT 59.099 50.000 0.00 0.00 0.00 2.90
3058 8340 2.317040 GTCCGTGATTATCCTCCCTGA 58.683 52.381 0.00 0.00 0.00 3.86
3059 8341 2.039418 TGTCCGTGATTATCCTCCCTG 58.961 52.381 0.00 0.00 0.00 4.45
3060 8342 2.471815 TGTCCGTGATTATCCTCCCT 57.528 50.000 0.00 0.00 0.00 4.20
3062 8344 4.073293 ACATTGTCCGTGATTATCCTCC 57.927 45.455 0.00 0.00 0.00 4.30
3063 8345 8.088981 AGTATAACATTGTCCGTGATTATCCTC 58.911 37.037 0.00 0.00 0.00 3.71
3065 8347 9.355215 CTAGTATAACATTGTCCGTGATTATCC 57.645 37.037 0.00 0.00 0.00 2.59
3067 8349 9.692749 CACTAGTATAACATTGTCCGTGATTAT 57.307 33.333 0.00 0.00 0.00 1.28
3068 8350 8.139350 CCACTAGTATAACATTGTCCGTGATTA 58.861 37.037 0.00 0.00 0.00 1.75
3069 8351 6.984474 CCACTAGTATAACATTGTCCGTGATT 59.016 38.462 0.00 0.00 0.00 2.57
3073 8355 4.404715 AGCCACTAGTATAACATTGTCCGT 59.595 41.667 0.00 0.00 0.00 4.69
3074 8356 4.945246 AGCCACTAGTATAACATTGTCCG 58.055 43.478 0.00 0.00 0.00 4.79
3075 8357 8.148351 TCATAAGCCACTAGTATAACATTGTCC 58.852 37.037 0.00 0.00 0.00 4.02
3076 8358 9.542462 TTCATAAGCCACTAGTATAACATTGTC 57.458 33.333 0.00 0.00 0.00 3.18
3080 8362 9.712305 GACATTCATAAGCCACTAGTATAACAT 57.288 33.333 0.00 0.00 0.00 2.71
3081 8363 8.924303 AGACATTCATAAGCCACTAGTATAACA 58.076 33.333 0.00 0.00 0.00 2.41
3084 8366 9.582648 TGTAGACATTCATAAGCCACTAGTATA 57.417 33.333 0.00 0.00 0.00 1.47
3086 8368 7.340999 TGTGTAGACATTCATAAGCCACTAGTA 59.659 37.037 0.00 0.00 0.00 1.82
3087 8369 6.154534 TGTGTAGACATTCATAAGCCACTAGT 59.845 38.462 0.00 0.00 0.00 2.57
3088 8370 6.477033 GTGTGTAGACATTCATAAGCCACTAG 59.523 42.308 0.00 0.00 33.63 2.57
3089 8371 6.338146 GTGTGTAGACATTCATAAGCCACTA 58.662 40.000 0.00 0.00 33.63 2.74
3090 8372 5.178797 GTGTGTAGACATTCATAAGCCACT 58.821 41.667 0.00 0.00 33.63 4.00
3091 8373 4.032900 CGTGTGTAGACATTCATAAGCCAC 59.967 45.833 0.00 0.00 33.63 5.01
3092 8374 4.081917 TCGTGTGTAGACATTCATAAGCCA 60.082 41.667 0.00 0.00 33.63 4.75
3093 8375 4.430007 TCGTGTGTAGACATTCATAAGCC 58.570 43.478 0.00 0.00 33.63 4.35
3094 8376 5.748630 TCATCGTGTGTAGACATTCATAAGC 59.251 40.000 0.00 0.00 33.63 3.09
3095 8377 7.755582 TTCATCGTGTGTAGACATTCATAAG 57.244 36.000 0.00 0.00 33.63 1.73
3096 8378 8.541133 TTTTCATCGTGTGTAGACATTCATAA 57.459 30.769 0.00 0.00 33.63 1.90
3098 8380 7.387673 TCTTTTTCATCGTGTGTAGACATTCAT 59.612 33.333 0.00 0.00 33.63 2.57
3099 8381 6.704050 TCTTTTTCATCGTGTGTAGACATTCA 59.296 34.615 0.00 0.00 33.63 2.57
3101 8383 6.929049 TCTCTTTTTCATCGTGTGTAGACATT 59.071 34.615 0.00 0.00 33.63 2.71
3102 8384 6.455647 TCTCTTTTTCATCGTGTGTAGACAT 58.544 36.000 0.00 0.00 33.63 3.06
3104 8386 6.128795 CCTTCTCTTTTTCATCGTGTGTAGAC 60.129 42.308 0.00 0.00 0.00 2.59
3108 8390 4.703897 TCCTTCTCTTTTTCATCGTGTGT 58.296 39.130 0.00 0.00 0.00 3.72
3109 8391 5.673337 TTCCTTCTCTTTTTCATCGTGTG 57.327 39.130 0.00 0.00 0.00 3.82
3110 8392 6.318900 ACTTTTCCTTCTCTTTTTCATCGTGT 59.681 34.615 0.00 0.00 0.00 4.49
3112 8394 6.944234 ACTTTTCCTTCTCTTTTTCATCGT 57.056 33.333 0.00 0.00 0.00 3.73
3113 8395 9.730420 TTTTACTTTTCCTTCTCTTTTTCATCG 57.270 29.630 0.00 0.00 0.00 3.84
3119 8401 9.817809 GACCAATTTTACTTTTCCTTCTCTTTT 57.182 29.630 0.00 0.00 0.00 2.27
3120 8402 9.201989 AGACCAATTTTACTTTTCCTTCTCTTT 57.798 29.630 0.00 0.00 0.00 2.52
3121 8403 8.768501 AGACCAATTTTACTTTTCCTTCTCTT 57.231 30.769 0.00 0.00 0.00 2.85
3124 8406 9.588096 ACATAGACCAATTTTACTTTTCCTTCT 57.412 29.630 0.00 0.00 0.00 2.85
3125 8407 9.626045 CACATAGACCAATTTTACTTTTCCTTC 57.374 33.333 0.00 0.00 0.00 3.46
3128 8410 7.542130 CAGCACATAGACCAATTTTACTTTTCC 59.458 37.037 0.00 0.00 0.00 3.13
3129 8411 8.082242 ACAGCACATAGACCAATTTTACTTTTC 58.918 33.333 0.00 0.00 0.00 2.29
3130 8412 7.867403 CACAGCACATAGACCAATTTTACTTTT 59.133 33.333 0.00 0.00 0.00 2.27
3131 8413 7.230510 TCACAGCACATAGACCAATTTTACTTT 59.769 33.333 0.00 0.00 0.00 2.66
3132 8414 6.714810 TCACAGCACATAGACCAATTTTACTT 59.285 34.615 0.00 0.00 0.00 2.24
3135 8417 6.349280 GCTTCACAGCACATAGACCAATTTTA 60.349 38.462 0.00 0.00 46.49 1.52
3136 8418 5.565439 GCTTCACAGCACATAGACCAATTTT 60.565 40.000 0.00 0.00 46.49 1.82
3138 8420 3.441572 GCTTCACAGCACATAGACCAATT 59.558 43.478 0.00 0.00 46.49 2.32
3139 8421 3.012518 GCTTCACAGCACATAGACCAAT 58.987 45.455 0.00 0.00 46.49 3.16
3140 8422 2.426522 GCTTCACAGCACATAGACCAA 58.573 47.619 0.00 0.00 46.49 3.67
3141 8423 2.099141 GCTTCACAGCACATAGACCA 57.901 50.000 0.00 0.00 46.49 4.02
3150 8432 9.743790 GCTTTATGCATATCAAGCTTCACAGCA 62.744 40.741 25.73 11.11 44.71 4.41
3153 8435 5.504501 CGCTTTATGCATATCAAGCTTCACA 60.505 40.000 28.03 2.73 39.99 3.58
3154 8436 4.908156 CGCTTTATGCATATCAAGCTTCAC 59.092 41.667 28.03 10.25 39.99 3.18
3155 8437 4.576053 ACGCTTTATGCATATCAAGCTTCA 59.424 37.500 28.03 3.80 39.99 3.02
3157 8439 6.427853 TCATACGCTTTATGCATATCAAGCTT 59.572 34.615 28.03 24.01 39.99 3.74
3159 8441 6.169419 TCATACGCTTTATGCATATCAAGC 57.831 37.500 24.19 24.19 43.06 4.01
3160 8442 9.091784 ACTATCATACGCTTTATGCATATCAAG 57.908 33.333 7.36 10.24 43.06 3.02
3161 8443 8.872845 CACTATCATACGCTTTATGCATATCAA 58.127 33.333 7.36 0.00 43.06 2.57
3162 8444 8.034804 ACACTATCATACGCTTTATGCATATCA 58.965 33.333 7.36 0.00 43.06 2.15
3163 8445 8.412608 ACACTATCATACGCTTTATGCATATC 57.587 34.615 7.36 0.00 43.06 1.63
3165 8447 7.870445 TCAACACTATCATACGCTTTATGCATA 59.130 33.333 1.16 1.16 43.06 3.14
3166 8448 6.705825 TCAACACTATCATACGCTTTATGCAT 59.294 34.615 3.79 3.79 43.06 3.96
3167 8449 6.045955 TCAACACTATCATACGCTTTATGCA 58.954 36.000 0.00 0.00 43.06 3.96
3168 8450 6.525121 TCAACACTATCATACGCTTTATGC 57.475 37.500 0.00 0.00 38.57 3.14
3169 8451 8.011673 CCATTCAACACTATCATACGCTTTATG 58.988 37.037 0.00 0.00 0.00 1.90
3171 8453 6.481976 CCCATTCAACACTATCATACGCTTTA 59.518 38.462 0.00 0.00 0.00 1.85
3172 8454 5.296780 CCCATTCAACACTATCATACGCTTT 59.703 40.000 0.00 0.00 0.00 3.51
3173 8455 4.816385 CCCATTCAACACTATCATACGCTT 59.184 41.667 0.00 0.00 0.00 4.68
3174 8456 4.380531 CCCATTCAACACTATCATACGCT 58.619 43.478 0.00 0.00 0.00 5.07
3175 8457 3.498397 CCCCATTCAACACTATCATACGC 59.502 47.826 0.00 0.00 0.00 4.42
3176 8458 4.703897 ACCCCATTCAACACTATCATACG 58.296 43.478 0.00 0.00 0.00 3.06
3177 8459 7.404671 AAAACCCCATTCAACACTATCATAC 57.595 36.000 0.00 0.00 0.00 2.39
3179 8461 6.933514 AAAAACCCCATTCAACACTATCAT 57.066 33.333 0.00 0.00 0.00 2.45
3210 8492 0.190815 AACCCCAACTTGCCAAGGAT 59.809 50.000 9.64 0.00 0.00 3.24
3211 8493 0.469144 GAACCCCAACTTGCCAAGGA 60.469 55.000 9.64 0.00 0.00 3.36
3212 8494 1.805428 CGAACCCCAACTTGCCAAGG 61.805 60.000 9.64 0.00 0.00 3.61
3213 8495 0.821711 TCGAACCCCAACTTGCCAAG 60.822 55.000 2.11 2.11 0.00 3.61
3214 8496 0.178975 ATCGAACCCCAACTTGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
3215 8497 0.893270 CATCGAACCCCAACTTGCCA 60.893 55.000 0.00 0.00 0.00 4.92
3218 8500 0.804989 GCTCATCGAACCCCAACTTG 59.195 55.000 0.00 0.00 0.00 3.16
3220 8502 1.079127 CGCTCATCGAACCCCAACT 60.079 57.895 0.00 0.00 41.67 3.16
3221 8503 1.079405 TCGCTCATCGAACCCCAAC 60.079 57.895 0.00 0.00 45.36 3.77
3222 8504 3.383229 TCGCTCATCGAACCCCAA 58.617 55.556 0.00 0.00 45.36 4.12
3230 8512 2.477825 AGTCCAATTCATCGCTCATCG 58.522 47.619 0.00 0.00 40.15 3.84
3232 8514 5.614308 TGATTAGTCCAATTCATCGCTCAT 58.386 37.500 0.00 0.00 0.00 2.90
3233 8515 5.022282 TGATTAGTCCAATTCATCGCTCA 57.978 39.130 0.00 0.00 0.00 4.26
3235 8517 5.371526 ACATGATTAGTCCAATTCATCGCT 58.628 37.500 0.00 0.00 0.00 4.93
3236 8518 5.237127 TGACATGATTAGTCCAATTCATCGC 59.763 40.000 0.00 0.00 35.15 4.58
3239 8521 9.803507 ACATATGACATGATTAGTCCAATTCAT 57.196 29.630 10.38 0.00 35.15 2.57
3240 8522 9.059260 CACATATGACATGATTAGTCCAATTCA 57.941 33.333 10.38 0.00 35.15 2.57
3241 8523 9.276590 TCACATATGACATGATTAGTCCAATTC 57.723 33.333 10.38 0.00 35.15 2.17
3272 8554 2.425143 ACCGGACCTTATACTCGACA 57.575 50.000 9.46 0.00 0.00 4.35
3273 8555 2.684881 TGAACCGGACCTTATACTCGAC 59.315 50.000 9.46 0.00 0.00 4.20
3274 8556 3.003394 TGAACCGGACCTTATACTCGA 57.997 47.619 9.46 0.00 0.00 4.04
3277 8559 4.351127 AGAGTTGAACCGGACCTTATACT 58.649 43.478 9.46 1.43 0.00 2.12
3278 8560 4.732672 AGAGTTGAACCGGACCTTATAC 57.267 45.455 9.46 0.00 0.00 1.47
3280 8562 5.424252 TCATTAGAGTTGAACCGGACCTTAT 59.576 40.000 9.46 0.00 0.00 1.73
3281 8563 4.773674 TCATTAGAGTTGAACCGGACCTTA 59.226 41.667 9.46 0.00 0.00 2.69
3282 8564 3.581332 TCATTAGAGTTGAACCGGACCTT 59.419 43.478 9.46 0.00 0.00 3.50
3283 8565 3.170717 TCATTAGAGTTGAACCGGACCT 58.829 45.455 9.46 0.00 0.00 3.85
3284 8566 3.604875 TCATTAGAGTTGAACCGGACC 57.395 47.619 9.46 0.00 0.00 4.46
3285 8567 4.753107 TGTTTCATTAGAGTTGAACCGGAC 59.247 41.667 9.46 1.77 33.03 4.79
3286 8568 4.963373 TGTTTCATTAGAGTTGAACCGGA 58.037 39.130 9.46 0.00 33.03 5.14
3287 8569 4.994852 TCTGTTTCATTAGAGTTGAACCGG 59.005 41.667 0.00 0.00 33.03 5.28
3288 8570 6.727824 ATCTGTTTCATTAGAGTTGAACCG 57.272 37.500 0.00 0.00 33.03 4.44
3289 8571 7.095187 ACGAATCTGTTTCATTAGAGTTGAACC 60.095 37.037 0.00 0.00 33.03 3.62
3290 8572 7.797819 ACGAATCTGTTTCATTAGAGTTGAAC 58.202 34.615 0.00 0.00 33.03 3.18
3291 8573 7.962964 ACGAATCTGTTTCATTAGAGTTGAA 57.037 32.000 0.00 0.00 33.66 2.69
3292 8574 7.962964 AACGAATCTGTTTCATTAGAGTTGA 57.037 32.000 0.00 0.00 33.66 3.18
3293 8575 8.070171 ACAAACGAATCTGTTTCATTAGAGTTG 58.930 33.333 0.00 0.00 39.94 3.16
3294 8576 8.154649 ACAAACGAATCTGTTTCATTAGAGTT 57.845 30.769 0.00 0.00 39.94 3.01
3295 8577 7.730364 ACAAACGAATCTGTTTCATTAGAGT 57.270 32.000 0.00 0.00 39.94 3.24
3296 8578 7.746475 GGAACAAACGAATCTGTTTCATTAGAG 59.254 37.037 0.00 0.00 39.94 2.43
3297 8579 7.444183 AGGAACAAACGAATCTGTTTCATTAGA 59.556 33.333 0.00 0.00 39.94 2.10
3298 8580 7.584987 AGGAACAAACGAATCTGTTTCATTAG 58.415 34.615 0.00 0.00 39.94 1.73
3299 8581 7.504924 AGGAACAAACGAATCTGTTTCATTA 57.495 32.000 0.00 0.00 39.94 1.90
3300 8582 6.391227 AGGAACAAACGAATCTGTTTCATT 57.609 33.333 0.00 0.75 39.94 2.57
3578 8860 1.633945 ACACACTTGTATTCCTCCCCC 59.366 52.381 0.00 0.00 32.60 5.40
3579 8861 2.677037 CGACACACTTGTATTCCTCCCC 60.677 54.545 0.00 0.00 35.47 4.81
3580 8862 2.028385 ACGACACACTTGTATTCCTCCC 60.028 50.000 0.00 0.00 35.47 4.30
3581 8863 2.993899 CACGACACACTTGTATTCCTCC 59.006 50.000 0.00 0.00 35.47 4.30
3582 8864 3.909430 TCACGACACACTTGTATTCCTC 58.091 45.455 0.00 0.00 35.47 3.71
3583 8865 4.537135 ATCACGACACACTTGTATTCCT 57.463 40.909 0.00 0.00 35.47 3.36
3584 8866 4.092968 GGAATCACGACACACTTGTATTCC 59.907 45.833 0.00 0.00 35.47 3.01
3585 8867 5.204673 GGAATCACGACACACTTGTATTC 57.795 43.478 0.00 0.00 35.47 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.