Multiple sequence alignment - TraesCS5A01G438700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G438700 chr5A 100.000 4270 0 0 1 4270 619966540 619970809 0.000000e+00 7886.0
1 TraesCS5A01G438700 chr5A 82.099 972 128 26 1201 2146 619956993 619957944 0.000000e+00 789.0
2 TraesCS5A01G438700 chr5A 77.322 1292 214 43 2975 4240 619853049 619854287 0.000000e+00 689.0
3 TraesCS5A01G438700 chr5A 81.972 710 111 13 2991 3695 620167709 620168406 1.920000e-163 586.0
4 TraesCS5A01G438700 chr5A 100.000 280 0 0 4515 4794 619971054 619971333 7.110000e-143 518.0
5 TraesCS5A01G438700 chr5A 77.749 782 123 24 2177 2911 619852295 619853072 2.650000e-117 433.0
6 TraesCS5A01G438700 chr5A 83.117 231 39 0 914 1144 619962210 619962440 1.350000e-50 211.0
7 TraesCS5A01G438700 chr5A 89.167 120 8 4 1 115 619960998 619961117 1.390000e-30 145.0
8 TraesCS5A01G438700 chr5B 95.216 1923 69 8 1211 3120 613652726 613654638 0.000000e+00 3020.0
9 TraesCS5A01G438700 chr5B 87.793 1065 96 16 3223 4263 614053034 614054088 0.000000e+00 1216.0
10 TraesCS5A01G438700 chr5B 85.938 1088 109 28 2176 3229 614051931 614053008 0.000000e+00 1122.0
11 TraesCS5A01G438700 chr5B 87.329 876 88 12 1206 2076 614050987 614051844 0.000000e+00 981.0
12 TraesCS5A01G438700 chr5B 88.042 853 54 21 328 1136 613651387 613652235 0.000000e+00 966.0
13 TraesCS5A01G438700 chr5B 84.528 795 91 18 1367 2155 613630686 613631454 0.000000e+00 758.0
14 TraesCS5A01G438700 chr5B 77.494 1293 214 39 2975 4240 613283894 613285136 0.000000e+00 704.0
15 TraesCS5A01G438700 chr5B 83.417 796 92 17 1373 2163 613641888 613642648 0.000000e+00 702.0
16 TraesCS5A01G438700 chr5B 84.364 550 58 17 3736 4263 614341387 614341930 9.200000e-142 514.0
17 TraesCS5A01G438700 chr5B 78.811 774 123 24 2175 2911 613642714 613643483 2.590000e-132 483.0
18 TraesCS5A01G438700 chr5B 83.943 492 57 10 2176 2646 613648115 613648605 7.320000e-123 451.0
19 TraesCS5A01G438700 chr5B 93.818 275 15 2 1138 1412 613652454 613652726 3.450000e-111 412.0
20 TraesCS5A01G438700 chr5B 76.910 602 77 34 569 1126 614050184 614050767 7.850000e-73 285.0
21 TraesCS5A01G438700 chr5B 90.230 174 11 5 4091 4263 613654644 613654812 6.240000e-54 222.0
22 TraesCS5A01G438700 chr5B 89.375 160 11 3 1 154 613651039 613651198 3.790000e-46 196.0
23 TraesCS5A01G438700 chr5D 96.640 1607 43 4 1090 2695 496152197 496153793 0.000000e+00 2658.0
24 TraesCS5A01G438700 chr5D 85.833 1927 186 48 2176 4045 496217411 496219307 0.000000e+00 1965.0
25 TraesCS5A01G438700 chr5D 97.233 1048 28 1 2851 3898 496154991 496156037 0.000000e+00 1773.0
26 TraesCS5A01G438700 chr5D 81.100 1582 226 34 1373 2899 496280302 496281865 0.000000e+00 1197.0
27 TraesCS5A01G438700 chr5D 86.857 875 87 15 1206 2076 496216474 496217324 0.000000e+00 953.0
28 TraesCS5A01G438700 chr5D 77.424 1289 218 39 2975 4240 496076720 496077958 0.000000e+00 701.0
29 TraesCS5A01G438700 chr5D 89.505 505 33 8 321 814 496151287 496151782 5.270000e-174 621.0
30 TraesCS5A01G438700 chr5D 86.871 556 70 3 1367 1921 496072599 496073152 1.900000e-173 619.0
31 TraesCS5A01G438700 chr5D 81.320 712 116 13 2991 3695 496281900 496282601 3.240000e-156 562.0
32 TraesCS5A01G438700 chr5D 79.578 759 91 22 2182 2896 495906617 495907355 7.210000e-133 484.0
33 TraesCS5A01G438700 chr5D 80.114 699 95 26 2175 2841 496135186 496135872 9.330000e-132 481.0
34 TraesCS5A01G438700 chr5D 77.593 781 124 31 2177 2911 496075968 496076743 4.430000e-115 425.0
35 TraesCS5A01G438700 chr5D 83.673 294 44 4 835 1126 496215879 496216170 1.700000e-69 274.0
36 TraesCS5A01G438700 chr5D 90.816 196 12 4 4070 4263 496223886 496224077 1.710000e-64 257.0
37 TraesCS5A01G438700 chr5D 95.098 102 5 0 2765 2866 496153788 496153889 1.380000e-35 161.0
38 TraesCS5A01G438700 chr5D 84.354 147 15 5 112 252 496214776 496214920 2.330000e-28 137.0
39 TraesCS5A01G438700 chr5D 87.156 109 10 2 50 154 496150967 496151075 2.340000e-23 121.0
40 TraesCS5A01G438700 chr5D 100.000 31 0 0 1 31 496150935 496150965 1.860000e-04 58.4
41 TraesCS5A01G438700 chrUn 82.419 711 95 20 3001 3698 338057378 338056685 1.150000e-165 593.0
42 TraesCS5A01G438700 chrUn 84.364 550 58 17 3736 4263 338056681 338056138 9.200000e-142 514.0
43 TraesCS5A01G438700 chr4A 81.761 477 68 12 2176 2634 126859383 126859858 9.740000e-102 381.0
44 TraesCS5A01G438700 chr6D 81.395 86 14 1 1046 1131 451312467 451312550 8.610000e-08 69.4
45 TraesCS5A01G438700 chr6B 86.792 53 7 0 1046 1098 685549254 685549306 5.180000e-05 60.2
46 TraesCS5A01G438700 chr4B 78.125 96 19 2 3519 3613 68362216 68362310 5.180000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G438700 chr5A 619966540 619971333 4793 False 4202.000000 7886 100.000000 1 4794 2 chr5A.!!$F4 4793
1 TraesCS5A01G438700 chr5A 620167709 620168406 697 False 586.000000 586 81.972000 2991 3695 1 chr5A.!!$F1 704
2 TraesCS5A01G438700 chr5A 619852295 619854287 1992 False 561.000000 689 77.535500 2177 4240 2 chr5A.!!$F2 2063
3 TraesCS5A01G438700 chr5A 619956993 619962440 5447 False 381.666667 789 84.794333 1 2146 3 chr5A.!!$F3 2145
4 TraesCS5A01G438700 chr5B 614050184 614054088 3904 False 901.000000 1216 84.492500 569 4263 4 chr5B.!!$F6 3694
5 TraesCS5A01G438700 chr5B 613648115 613654812 6697 False 877.833333 3020 90.104000 1 4263 6 chr5B.!!$F5 4262
6 TraesCS5A01G438700 chr5B 613630686 613631454 768 False 758.000000 758 84.528000 1367 2155 1 chr5B.!!$F2 788
7 TraesCS5A01G438700 chr5B 613283894 613285136 1242 False 704.000000 704 77.494000 2975 4240 1 chr5B.!!$F1 1265
8 TraesCS5A01G438700 chr5B 613641888 613643483 1595 False 592.500000 702 81.114000 1373 2911 2 chr5B.!!$F4 1538
9 TraesCS5A01G438700 chr5B 614341387 614341930 543 False 514.000000 514 84.364000 3736 4263 1 chr5B.!!$F3 527
10 TraesCS5A01G438700 chr5D 496150935 496156037 5102 False 898.733333 2658 94.272000 1 3898 6 chr5D.!!$F5 3897
11 TraesCS5A01G438700 chr5D 496280302 496282601 2299 False 879.500000 1197 81.210000 1373 3695 2 chr5D.!!$F7 2322
12 TraesCS5A01G438700 chr5D 496214776 496219307 4531 False 832.250000 1965 85.179250 112 4045 4 chr5D.!!$F6 3933
13 TraesCS5A01G438700 chr5D 496072599 496077958 5359 False 581.666667 701 80.629333 1367 4240 3 chr5D.!!$F4 2873
14 TraesCS5A01G438700 chr5D 495906617 495907355 738 False 484.000000 484 79.578000 2182 2896 1 chr5D.!!$F1 714
15 TraesCS5A01G438700 chr5D 496135186 496135872 686 False 481.000000 481 80.114000 2175 2841 1 chr5D.!!$F2 666
16 TraesCS5A01G438700 chrUn 338056138 338057378 1240 True 553.500000 593 83.391500 3001 4263 2 chrUn.!!$R1 1262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 3132 0.098552 TTGTCTGCACTGCACAAACG 59.901 50.000 0.0 0.0 33.79 3.60 F
589 3918 0.460987 CGGCCTTCGCATTCTTCTCT 60.461 55.000 0.0 0.0 36.38 3.10 F
767 4117 0.676782 CCCTTCGGCCTGTTTGTAGG 60.677 60.000 0.0 0.0 40.95 3.18 F
2320 8913 1.866925 GTTTCAAGGGCGAGTTCCG 59.133 57.895 0.0 0.0 42.21 4.30 F
2779 9451 4.889409 TCCCTTGCAAACCATTCTCATATC 59.111 41.667 0.0 0.0 0.00 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1098 4611 2.128035 GTTACCATCGCATCTCGGAAG 58.872 52.381 0.00 0.0 39.05 3.46 R
1460 5429 2.343101 GCAACCACAATAGCGTGACTA 58.657 47.619 0.00 0.0 39.34 2.59 R
2588 9214 2.734755 TGGGCTGAGGATGTAAATGG 57.265 50.000 0.00 0.0 0.00 3.16 R
3457 11361 0.381089 GCAGCTGAAGATCCATGTGC 59.619 55.000 20.43 0.0 0.00 4.57 R
4616 14027 0.107831 AAGCTGTTCAGGCCGTTGTA 59.892 50.000 0.00 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 2957 4.622740 GCGATTTTCACCATCTTTTCCTTG 59.377 41.667 0.00 0.00 0.00 3.61
33 2958 5.163513 CGATTTTCACCATCTTTTCCTTGG 58.836 41.667 0.00 0.00 36.56 3.61
34 2959 4.953940 TTTTCACCATCTTTTCCTTGGG 57.046 40.909 0.00 0.00 34.72 4.12
36 2961 3.154827 TCACCATCTTTTCCTTGGGTC 57.845 47.619 0.00 0.00 34.72 4.46
37 2962 2.716424 TCACCATCTTTTCCTTGGGTCT 59.284 45.455 0.00 0.00 34.72 3.85
38 2963 3.140144 TCACCATCTTTTCCTTGGGTCTT 59.860 43.478 0.00 0.00 34.72 3.01
47 2977 0.609131 CCTTGGGTCTTGGCGTGATT 60.609 55.000 0.00 0.00 0.00 2.57
62 2992 2.541346 CGTGATTCTGGATCCAACATCG 59.459 50.000 17.00 11.76 33.60 3.84
68 2998 1.262417 CTGGATCCAACATCGCATTCG 59.738 52.381 17.00 0.00 0.00 3.34
73 3003 2.284190 TCCAACATCGCATTCGCATAA 58.716 42.857 0.00 0.00 38.40 1.90
79 3009 2.605837 TCGCATTCGCATAACCCTTA 57.394 45.000 0.00 0.00 38.40 2.69
86 3016 3.746045 TCGCATAACCCTTACTCCATC 57.254 47.619 0.00 0.00 0.00 3.51
123 3057 1.173043 ACATTTATGCGTGTGTGGGG 58.827 50.000 0.00 0.00 0.00 4.96
184 3122 4.030452 GCCACGCCTTGTCTGCAC 62.030 66.667 0.00 0.00 0.00 4.57
185 3123 2.281070 CCACGCCTTGTCTGCACT 60.281 61.111 0.00 0.00 0.00 4.40
186 3124 2.610694 CCACGCCTTGTCTGCACTG 61.611 63.158 0.00 0.00 0.00 3.66
187 3125 2.974698 ACGCCTTGTCTGCACTGC 60.975 61.111 0.00 0.00 0.00 4.40
188 3126 2.974148 CGCCTTGTCTGCACTGCA 60.974 61.111 3.11 3.11 36.92 4.41
189 3127 2.641559 GCCTTGTCTGCACTGCAC 59.358 61.111 0.00 0.00 33.79 4.57
190 3128 2.188829 GCCTTGTCTGCACTGCACA 61.189 57.895 0.00 0.00 33.79 4.57
191 3129 1.727511 GCCTTGTCTGCACTGCACAA 61.728 55.000 0.00 3.35 33.79 3.33
192 3130 0.740149 CCTTGTCTGCACTGCACAAA 59.260 50.000 0.00 0.00 33.79 2.83
193 3131 1.534595 CCTTGTCTGCACTGCACAAAC 60.535 52.381 0.00 0.00 33.79 2.93
194 3132 0.098552 TTGTCTGCACTGCACAAACG 59.901 50.000 0.00 0.00 33.79 3.60
195 3133 1.655350 GTCTGCACTGCACAAACGC 60.655 57.895 0.00 0.00 33.79 4.84
196 3134 2.723271 CTGCACTGCACAAACGCG 60.723 61.111 3.53 3.53 33.79 6.01
197 3135 4.903355 TGCACTGCACAAACGCGC 62.903 61.111 5.73 0.00 31.71 6.86
198 3136 4.612536 GCACTGCACAAACGCGCT 62.613 61.111 5.73 0.00 33.35 5.92
199 3137 2.425773 CACTGCACAAACGCGCTC 60.426 61.111 5.73 0.00 33.35 5.03
200 3138 2.588877 ACTGCACAAACGCGCTCT 60.589 55.556 5.73 0.00 33.35 4.09
201 3139 2.171940 CTGCACAAACGCGCTCTC 59.828 61.111 5.73 0.00 33.35 3.20
202 3140 3.620187 CTGCACAAACGCGCTCTCG 62.620 63.158 5.73 0.00 39.07 4.04
203 3141 3.403057 GCACAAACGCGCTCTCGA 61.403 61.111 5.73 0.00 38.10 4.04
280 3330 2.053865 ATCGGGGCGACGTTAGGAA 61.054 57.895 0.00 0.00 39.18 3.36
319 3385 1.118838 CGGCCAGAGGAGAGAAATCT 58.881 55.000 2.24 0.00 0.00 2.40
325 3393 2.836981 CAGAGGAGAGAAATCTGGTGGT 59.163 50.000 0.00 0.00 37.41 4.16
326 3394 3.103742 AGAGGAGAGAAATCTGGTGGTC 58.896 50.000 0.00 0.00 0.00 4.02
441 3524 3.101643 AGAAAATACCTTTCCCCTGCC 57.898 47.619 0.00 0.00 43.98 4.85
447 3534 1.423584 ACCTTTCCCCTGCCAAAAAG 58.576 50.000 0.00 0.00 0.00 2.27
448 3535 1.062505 ACCTTTCCCCTGCCAAAAAGA 60.063 47.619 0.00 0.00 31.81 2.52
449 3536 2.046292 CCTTTCCCCTGCCAAAAAGAA 58.954 47.619 0.00 0.00 31.81 2.52
450 3537 2.437651 CCTTTCCCCTGCCAAAAAGAAA 59.562 45.455 0.00 0.00 31.81 2.52
451 3538 3.118075 CCTTTCCCCTGCCAAAAAGAAAA 60.118 43.478 0.00 0.00 31.81 2.29
452 3539 4.446167 CCTTTCCCCTGCCAAAAAGAAAAT 60.446 41.667 0.00 0.00 31.81 1.82
494 3795 6.713903 CACAAATCCATGGCAGATCTAGTTAT 59.286 38.462 6.96 0.00 0.00 1.89
509 3810 7.724506 AGATCTAGTTATCCACAATACTTCCGA 59.275 37.037 0.00 0.00 0.00 4.55
589 3918 0.460987 CGGCCTTCGCATTCTTCTCT 60.461 55.000 0.00 0.00 36.38 3.10
593 3922 1.012841 CTTCGCATTCTTCTCTGGGC 58.987 55.000 0.00 0.00 0.00 5.36
642 3971 1.880819 CTGGTGTCCCCTTGCAATGC 61.881 60.000 0.00 0.00 0.00 3.56
714 4044 4.617875 GCAGGTGCGGTATCAAGT 57.382 55.556 0.00 0.00 0.00 3.16
724 4054 2.418197 GCGGTATCAAGTTAGGCTCACA 60.418 50.000 1.11 0.00 0.00 3.58
726 4056 3.130516 CGGTATCAAGTTAGGCTCACAGA 59.869 47.826 1.11 0.00 0.00 3.41
767 4117 0.676782 CCCTTCGGCCTGTTTGTAGG 60.677 60.000 0.00 0.00 40.95 3.18
821 4212 6.598064 GGTTAATTTACAGCTTCTAGCCTTCA 59.402 38.462 0.00 0.00 43.77 3.02
863 4254 8.876275 TGAAGAAAGAATTGAAGTTCCAAATG 57.124 30.769 0.00 0.00 0.00 2.32
871 4262 4.669206 TGAAGTTCCAAATGCACATTGT 57.331 36.364 11.81 0.00 0.00 2.71
877 4268 2.296752 TCCAAATGCACATTGTGGAGTG 59.703 45.455 18.05 15.85 37.30 3.51
887 4281 2.212812 TTGTGGAGTGCATGGCATTA 57.787 45.000 0.00 0.00 41.91 1.90
902 4296 4.323417 TGGCATTAGGTCAAGTACAACAG 58.677 43.478 0.00 0.00 0.00 3.16
1044 4444 3.832490 TGAACCTATGGGATGAGTATCGG 59.168 47.826 0.25 0.00 35.15 4.18
1098 4611 1.904287 TGGTGCTTATGTTGGGTGAC 58.096 50.000 0.00 0.00 0.00 3.67
1254 5012 7.708752 CAGGTAAGATCTACACTCATTTTCCTC 59.291 40.741 0.00 0.00 0.00 3.71
1317 5280 9.216117 ACAAAGATACACCTTGATTGTAACTAC 57.784 33.333 0.00 0.00 32.95 2.73
1335 5298 7.990886 TGTAACTACTGTCTTTTGGATCTTGTT 59.009 33.333 0.00 0.00 0.00 2.83
1336 5299 7.881775 AACTACTGTCTTTTGGATCTTGTTT 57.118 32.000 0.00 0.00 0.00 2.83
1566 5535 7.963532 TCTACAGATGGGTGATTCCTTAATAC 58.036 38.462 0.00 0.00 36.25 1.89
1744 5719 3.266772 TCATGCCTTCATTTCCTGGTACT 59.733 43.478 0.00 0.00 0.00 2.73
2106 8616 4.579454 ATTTGATGCCTGGATTGAATCG 57.421 40.909 0.00 0.00 0.00 3.34
2112 8622 1.952296 GCCTGGATTGAATCGAGCATT 59.048 47.619 11.17 0.00 34.25 3.56
2320 8913 1.866925 GTTTCAAGGGCGAGTTCCG 59.133 57.895 0.00 0.00 42.21 4.30
2340 8933 6.384258 TCCGAAGAGAGATGATACTTGAAG 57.616 41.667 0.00 0.00 0.00 3.02
2779 9451 4.889409 TCCCTTGCAAACCATTCTCATATC 59.111 41.667 0.00 0.00 0.00 1.63
2781 9453 5.009410 CCCTTGCAAACCATTCTCATATCTC 59.991 44.000 0.00 0.00 0.00 2.75
3457 11361 3.760580 AAATATCTTGGAGAGGAGCCG 57.239 47.619 0.00 0.00 0.00 5.52
3464 11368 2.202987 GAGAGGAGCCGCACATGG 60.203 66.667 0.00 0.00 0.00 3.66
3648 11558 4.437239 GTCTATATCATCCCTGCGAATGG 58.563 47.826 0.00 0.00 0.00 3.16
3772 11682 0.586802 CGCGTGATCCTGACTCGATA 59.413 55.000 0.00 0.00 0.00 2.92
3800 11711 6.647212 TTCGCATCACTAATTAACACTGAG 57.353 37.500 0.00 0.00 0.00 3.35
3900 11829 0.039165 GTTTTTGCGCTCTGGGGAAG 60.039 55.000 9.73 0.00 0.00 3.46
3901 11830 0.467290 TTTTTGCGCTCTGGGGAAGT 60.467 50.000 9.73 0.00 0.00 3.01
3912 11845 1.521681 GGGGAAGTCAAGCGATCCG 60.522 63.158 0.00 0.00 32.56 4.18
4057 12065 8.328146 GTTTTAGCTGCTTTTTAGTTTCCTTTG 58.672 33.333 7.79 0.00 0.00 2.77
4068 12076 0.178964 TTTCCTTTGGCACCTCTGGG 60.179 55.000 0.00 0.00 38.88 4.45
4084 12092 0.975040 TGGGTGCTGCTTTTGTGGTT 60.975 50.000 0.00 0.00 0.00 3.67
4087 12095 0.459934 GTGCTGCTTTTGTGGTTGCA 60.460 50.000 0.00 0.00 0.00 4.08
4108 12122 7.067532 TGCAGTTTTATTTCGTTATCGTGAT 57.932 32.000 0.00 0.00 38.33 3.06
4109 12123 6.958752 TGCAGTTTTATTTCGTTATCGTGATG 59.041 34.615 0.00 0.00 38.33 3.07
4110 12124 7.148557 TGCAGTTTTATTTCGTTATCGTGATGA 60.149 33.333 0.00 0.00 38.33 2.92
4124 12138 4.464947 TCGTGATGATGATAGTGGAGTCT 58.535 43.478 0.00 0.00 0.00 3.24
4139 12153 2.041922 TCTGGTCCTATGCGGCCT 60.042 61.111 0.00 0.00 32.24 5.19
4142 12156 1.077787 TGGTCCTATGCGGCCTTTG 60.078 57.895 0.00 0.00 32.24 2.77
4144 12158 1.223487 GTCCTATGCGGCCTTTGGA 59.777 57.895 0.00 0.00 0.00 3.53
4242 13653 3.146066 TCATGTTGGTGGTAGTGCTTTC 58.854 45.455 0.00 0.00 0.00 2.62
4264 13675 1.518325 TGTTGGTTCGTGAATCGCAT 58.482 45.000 0.00 0.00 39.67 4.73
4265 13676 1.876799 TGTTGGTTCGTGAATCGCATT 59.123 42.857 0.00 0.00 39.67 3.56
4267 13678 3.498777 TGTTGGTTCGTGAATCGCATTTA 59.501 39.130 0.00 0.00 39.67 1.40
4269 13680 3.067833 TGGTTCGTGAATCGCATTTACA 58.932 40.909 0.00 0.00 39.67 2.41
4534 13945 3.815856 ACTTCATCGATGCAGTCATCT 57.184 42.857 22.63 2.35 45.32 2.90
4535 13946 3.715495 ACTTCATCGATGCAGTCATCTC 58.285 45.455 22.63 0.00 45.32 2.75
4536 13947 2.808523 TCATCGATGCAGTCATCTCC 57.191 50.000 20.81 0.00 45.32 3.71
4537 13948 2.314246 TCATCGATGCAGTCATCTCCT 58.686 47.619 20.81 0.00 45.32 3.69
4538 13949 2.697229 TCATCGATGCAGTCATCTCCTT 59.303 45.455 20.81 0.00 45.32 3.36
4539 13950 2.591571 TCGATGCAGTCATCTCCTTG 57.408 50.000 0.00 0.00 45.32 3.61
4540 13951 2.102578 TCGATGCAGTCATCTCCTTGA 58.897 47.619 0.00 0.00 45.32 3.02
4546 13957 3.056628 GTCATCTCCTTGACGGCAG 57.943 57.895 0.00 0.00 36.93 4.85
4547 13958 1.086634 GTCATCTCCTTGACGGCAGC 61.087 60.000 0.00 0.00 36.93 5.25
4548 13959 2.169789 CATCTCCTTGACGGCAGCG 61.170 63.158 0.00 0.00 0.00 5.18
4550 13961 2.564553 ATCTCCTTGACGGCAGCGAC 62.565 60.000 0.00 0.00 0.00 5.19
4551 13962 4.373116 TCCTTGACGGCAGCGACC 62.373 66.667 0.00 0.00 0.00 4.79
4553 13964 3.414700 CTTGACGGCAGCGACCAC 61.415 66.667 0.00 0.00 0.00 4.16
4554 13965 3.865929 CTTGACGGCAGCGACCACT 62.866 63.158 0.00 0.00 0.00 4.00
4555 13966 3.858868 TTGACGGCAGCGACCACTC 62.859 63.158 0.00 0.00 0.00 3.51
4559 13970 4.767255 GGCAGCGACCACTCCTGG 62.767 72.222 0.00 0.00 44.26 4.45
4560 13971 4.767255 GCAGCGACCACTCCTGGG 62.767 72.222 0.00 0.00 42.74 4.45
4561 13972 2.997315 CAGCGACCACTCCTGGGA 60.997 66.667 0.00 0.00 42.74 4.37
4562 13973 2.203788 AGCGACCACTCCTGGGAA 60.204 61.111 0.00 0.00 42.74 3.97
4563 13974 2.266055 GCGACCACTCCTGGGAAG 59.734 66.667 0.00 0.00 42.74 3.46
4564 13975 2.283529 GCGACCACTCCTGGGAAGA 61.284 63.158 0.00 0.00 42.74 2.87
4566 13977 0.247736 CGACCACTCCTGGGAAGAAG 59.752 60.000 0.00 0.00 42.74 2.85
4567 13978 1.645710 GACCACTCCTGGGAAGAAGA 58.354 55.000 0.00 0.00 42.74 2.87
4568 13979 1.978580 GACCACTCCTGGGAAGAAGAA 59.021 52.381 0.00 0.00 42.74 2.52
4569 13980 1.981495 ACCACTCCTGGGAAGAAGAAG 59.019 52.381 0.00 0.00 42.74 2.85
4570 13981 2.260822 CCACTCCTGGGAAGAAGAAGA 58.739 52.381 0.00 0.00 33.23 2.87
4571 13982 2.639839 CCACTCCTGGGAAGAAGAAGAA 59.360 50.000 0.00 0.00 33.23 2.52
4572 13983 3.307339 CCACTCCTGGGAAGAAGAAGAAG 60.307 52.174 0.00 0.00 33.23 2.85
4573 13984 2.304470 ACTCCTGGGAAGAAGAAGAAGC 59.696 50.000 0.00 0.00 0.00 3.86
4575 13986 2.304180 TCCTGGGAAGAAGAAGAAGCAG 59.696 50.000 0.00 0.00 0.00 4.24
4576 13987 2.617532 CCTGGGAAGAAGAAGAAGCAGG 60.618 54.545 0.00 0.00 0.00 4.85
4577 13988 1.271597 TGGGAAGAAGAAGAAGCAGGC 60.272 52.381 0.00 0.00 0.00 4.85
4580 13991 2.487372 GGAAGAAGAAGAAGCAGGCAAG 59.513 50.000 0.00 0.00 0.00 4.01
4581 13992 2.197283 AGAAGAAGAAGCAGGCAAGG 57.803 50.000 0.00 0.00 0.00 3.61
4582 13993 0.525311 GAAGAAGAAGCAGGCAAGGC 59.475 55.000 0.00 0.00 0.00 4.35
4583 13994 1.239968 AAGAAGAAGCAGGCAAGGCG 61.240 55.000 0.00 0.00 36.08 5.52
4584 13995 2.674380 AAGAAGCAGGCAAGGCGG 60.674 61.111 0.00 0.00 36.08 6.13
4594 14005 3.869272 CAAGGCGGCTGCGACATC 61.869 66.667 14.21 0.00 44.10 3.06
4595 14006 4.087892 AAGGCGGCTGCGACATCT 62.088 61.111 14.21 0.00 44.10 2.90
4596 14007 3.612247 AAGGCGGCTGCGACATCTT 62.612 57.895 14.21 5.76 44.10 2.40
4597 14008 3.567797 GGCGGCTGCGACATCTTC 61.568 66.667 12.29 0.00 44.10 2.87
4605 14016 3.081133 CGACATCTTCGTTGGCCG 58.919 61.111 0.00 0.00 43.24 6.13
4606 14017 2.452813 CGACATCTTCGTTGGCCGG 61.453 63.158 0.00 0.00 43.24 6.13
4608 14019 1.635663 GACATCTTCGTTGGCCGGTG 61.636 60.000 1.90 0.00 37.11 4.94
4609 14020 2.746277 ATCTTCGTTGGCCGGTGC 60.746 61.111 1.90 0.00 37.11 5.01
4611 14022 3.423154 CTTCGTTGGCCGGTGCTC 61.423 66.667 1.90 0.00 37.74 4.26
4612 14023 3.883744 CTTCGTTGGCCGGTGCTCT 62.884 63.158 1.90 0.00 37.74 4.09
4613 14024 4.680237 TCGTTGGCCGGTGCTCTG 62.680 66.667 1.90 0.00 37.74 3.35
4620 14031 2.662596 CCGGTGCTCTGGCTACAA 59.337 61.111 0.00 0.00 39.59 2.41
4621 14032 1.741770 CCGGTGCTCTGGCTACAAC 60.742 63.158 0.00 0.00 39.59 3.32
4623 14034 1.741770 GGTGCTCTGGCTACAACGG 60.742 63.158 0.00 0.00 39.59 4.44
4624 14035 2.047274 TGCTCTGGCTACAACGGC 60.047 61.111 0.00 0.00 39.59 5.68
4630 14041 3.574780 GGCTACAACGGCCTGAAC 58.425 61.111 0.00 0.00 45.57 3.18
4631 14042 1.302192 GGCTACAACGGCCTGAACA 60.302 57.895 0.00 0.00 45.57 3.18
4632 14043 1.298859 GGCTACAACGGCCTGAACAG 61.299 60.000 0.00 0.00 45.57 3.16
4633 14044 1.912371 GCTACAACGGCCTGAACAGC 61.912 60.000 0.00 0.00 0.00 4.40
4635 14046 0.107831 TACAACGGCCTGAACAGCTT 59.892 50.000 0.00 0.00 0.00 3.74
4636 14047 1.166531 ACAACGGCCTGAACAGCTTC 61.167 55.000 0.00 0.00 0.00 3.86
4638 14049 1.166531 AACGGCCTGAACAGCTTCAC 61.167 55.000 0.00 0.00 32.68 3.18
4641 14052 1.294659 GGCCTGAACAGCTTCACTCG 61.295 60.000 0.00 0.00 32.68 4.18
4643 14054 1.871080 CCTGAACAGCTTCACTCGTT 58.129 50.000 0.00 0.00 32.68 3.85
4644 14055 2.213499 CCTGAACAGCTTCACTCGTTT 58.787 47.619 0.00 0.00 32.68 3.60
4645 14056 2.032549 CCTGAACAGCTTCACTCGTTTG 60.033 50.000 0.00 0.00 32.68 2.93
4646 14057 2.866156 CTGAACAGCTTCACTCGTTTGA 59.134 45.455 0.00 0.00 32.68 2.69
4647 14058 3.466836 TGAACAGCTTCACTCGTTTGAT 58.533 40.909 0.00 0.00 31.00 2.57
4649 14060 4.335315 TGAACAGCTTCACTCGTTTGATTT 59.665 37.500 0.00 0.00 31.00 2.17
4650 14061 4.474226 ACAGCTTCACTCGTTTGATTTC 57.526 40.909 0.00 0.00 0.00 2.17
4651 14062 3.251004 ACAGCTTCACTCGTTTGATTTCC 59.749 43.478 0.00 0.00 0.00 3.13
4652 14063 3.499918 CAGCTTCACTCGTTTGATTTCCT 59.500 43.478 0.00 0.00 0.00 3.36
4653 14064 3.499918 AGCTTCACTCGTTTGATTTCCTG 59.500 43.478 0.00 0.00 0.00 3.86
4655 14066 4.776743 CTTCACTCGTTTGATTTCCTGTG 58.223 43.478 0.00 0.00 0.00 3.66
4656 14067 3.804036 TCACTCGTTTGATTTCCTGTGT 58.196 40.909 0.00 0.00 0.00 3.72
4657 14068 4.196193 TCACTCGTTTGATTTCCTGTGTT 58.804 39.130 0.00 0.00 0.00 3.32
4658 14069 5.361427 TCACTCGTTTGATTTCCTGTGTTA 58.639 37.500 0.00 0.00 0.00 2.41
4660 14071 6.147164 TCACTCGTTTGATTTCCTGTGTTATC 59.853 38.462 0.00 0.00 0.00 1.75
4662 14073 6.369065 ACTCGTTTGATTTCCTGTGTTATCTC 59.631 38.462 0.00 0.00 0.00 2.75
4664 14075 6.368791 TCGTTTGATTTCCTGTGTTATCTCTG 59.631 38.462 0.00 0.00 0.00 3.35
4668 14079 7.672983 TGATTTCCTGTGTTATCTCTGTTTC 57.327 36.000 0.00 0.00 0.00 2.78
4670 14081 7.939039 TGATTTCCTGTGTTATCTCTGTTTCTT 59.061 33.333 0.00 0.00 0.00 2.52
4671 14082 9.436957 GATTTCCTGTGTTATCTCTGTTTCTTA 57.563 33.333 0.00 0.00 0.00 2.10
4672 14083 9.965902 ATTTCCTGTGTTATCTCTGTTTCTTAT 57.034 29.630 0.00 0.00 0.00 1.73
4673 14084 8.777865 TTCCTGTGTTATCTCTGTTTCTTATG 57.222 34.615 0.00 0.00 0.00 1.90
4674 14085 7.331026 TCCTGTGTTATCTCTGTTTCTTATGG 58.669 38.462 0.00 0.00 0.00 2.74
4675 14086 7.180229 TCCTGTGTTATCTCTGTTTCTTATGGA 59.820 37.037 0.00 0.00 0.00 3.41
4676 14087 7.989741 CCTGTGTTATCTCTGTTTCTTATGGAT 59.010 37.037 0.00 0.00 0.00 3.41
4678 14089 9.739276 TGTGTTATCTCTGTTTCTTATGGATTT 57.261 29.630 0.00 0.00 0.00 2.17
4685 14096 7.716998 TCTCTGTTTCTTATGGATTTAGCCATC 59.283 37.037 2.24 0.00 45.36 3.51
4688 14099 9.342308 CTGTTTCTTATGGATTTAGCCATCTTA 57.658 33.333 2.24 0.00 45.36 2.10
4692 14103 9.920946 TTCTTATGGATTTAGCCATCTTAAGTT 57.079 29.630 2.24 0.00 45.36 2.66
4693 14104 9.342308 TCTTATGGATTTAGCCATCTTAAGTTG 57.658 33.333 2.24 4.43 45.36 3.16
4694 14105 6.966534 ATGGATTTAGCCATCTTAAGTTGG 57.033 37.500 23.14 23.14 45.36 3.77
4697 14108 7.125391 TGGATTTAGCCATCTTAAGTTGGAAT 58.875 34.615 29.11 20.89 37.12 3.01
4698 14109 7.068593 TGGATTTAGCCATCTTAAGTTGGAATG 59.931 37.037 29.11 13.65 37.12 2.67
4700 14111 7.775053 TTTAGCCATCTTAAGTTGGAATGTT 57.225 32.000 29.11 14.28 37.12 2.71
4701 14112 8.871629 TTTAGCCATCTTAAGTTGGAATGTTA 57.128 30.769 29.11 13.53 37.12 2.41
4702 14113 8.506168 TTAGCCATCTTAAGTTGGAATGTTAG 57.494 34.615 29.11 7.13 37.12 2.34
4703 14114 6.721318 AGCCATCTTAAGTTGGAATGTTAGA 58.279 36.000 29.11 0.00 37.12 2.10
4704 14115 6.825721 AGCCATCTTAAGTTGGAATGTTAGAG 59.174 38.462 29.11 5.95 37.12 2.43
4705 14116 6.038714 GCCATCTTAAGTTGGAATGTTAGAGG 59.961 42.308 29.11 5.54 37.12 3.69
4707 14118 7.281100 CCATCTTAAGTTGGAATGTTAGAGGTC 59.719 40.741 23.09 0.00 37.12 3.85
4708 14119 7.554959 TCTTAAGTTGGAATGTTAGAGGTCT 57.445 36.000 1.63 0.00 0.00 3.85
4709 14120 7.974504 TCTTAAGTTGGAATGTTAGAGGTCTT 58.025 34.615 1.63 0.00 0.00 3.01
4711 14122 6.884280 AAGTTGGAATGTTAGAGGTCTTTG 57.116 37.500 0.00 0.00 0.00 2.77
4712 14123 4.762251 AGTTGGAATGTTAGAGGTCTTTGC 59.238 41.667 0.00 0.00 0.00 3.68
4713 14124 4.365514 TGGAATGTTAGAGGTCTTTGCA 57.634 40.909 0.00 0.00 0.00 4.08
4714 14125 4.724399 TGGAATGTTAGAGGTCTTTGCAA 58.276 39.130 0.00 0.00 0.00 4.08
4716 14127 5.774690 TGGAATGTTAGAGGTCTTTGCAATT 59.225 36.000 0.00 0.00 0.00 2.32
4717 14128 6.071952 TGGAATGTTAGAGGTCTTTGCAATTC 60.072 38.462 0.00 0.00 0.00 2.17
4718 14129 6.071952 GGAATGTTAGAGGTCTTTGCAATTCA 60.072 38.462 0.00 0.00 0.00 2.57
4719 14130 5.947228 TGTTAGAGGTCTTTGCAATTCAG 57.053 39.130 0.00 0.00 0.00 3.02
4720 14131 4.216257 TGTTAGAGGTCTTTGCAATTCAGC 59.784 41.667 0.00 0.00 0.00 4.26
4721 14132 2.165998 AGAGGTCTTTGCAATTCAGCC 58.834 47.619 0.00 1.20 0.00 4.85
4722 14133 1.888512 GAGGTCTTTGCAATTCAGCCA 59.111 47.619 0.00 0.00 0.00 4.75
4723 14134 2.297033 GAGGTCTTTGCAATTCAGCCAA 59.703 45.455 0.00 0.00 0.00 4.52
4724 14135 2.298163 AGGTCTTTGCAATTCAGCCAAG 59.702 45.455 0.00 0.00 38.29 3.61
4725 14136 2.297033 GGTCTTTGCAATTCAGCCAAGA 59.703 45.455 0.00 0.00 42.03 3.02
4726 14137 3.572584 GTCTTTGCAATTCAGCCAAGAG 58.427 45.455 0.00 0.00 44.00 2.85
4727 14138 2.559668 TCTTTGCAATTCAGCCAAGAGG 59.440 45.455 0.00 0.00 40.18 3.69
4729 14140 1.830279 TGCAATTCAGCCAAGAGGAG 58.170 50.000 0.00 0.00 36.89 3.69
4730 14141 1.352017 TGCAATTCAGCCAAGAGGAGA 59.648 47.619 0.00 0.00 36.89 3.71
4732 14143 2.617774 GCAATTCAGCCAAGAGGAGATC 59.382 50.000 0.00 0.00 36.89 2.75
4733 14144 3.882444 CAATTCAGCCAAGAGGAGATCA 58.118 45.455 0.00 0.00 36.89 2.92
4734 14145 3.842007 ATTCAGCCAAGAGGAGATCAG 57.158 47.619 0.00 0.00 36.89 2.90
4735 14146 2.244486 TCAGCCAAGAGGAGATCAGT 57.756 50.000 0.00 0.00 36.89 3.41
4736 14147 2.106566 TCAGCCAAGAGGAGATCAGTC 58.893 52.381 0.00 0.00 36.89 3.51
4738 14149 2.435069 CAGCCAAGAGGAGATCAGTCAT 59.565 50.000 0.00 0.00 36.89 3.06
4739 14150 2.435069 AGCCAAGAGGAGATCAGTCATG 59.565 50.000 0.00 0.00 36.89 3.07
4740 14151 2.433604 GCCAAGAGGAGATCAGTCATGA 59.566 50.000 0.00 0.00 37.10 3.07
4741 14152 3.493002 GCCAAGAGGAGATCAGTCATGAG 60.493 52.174 0.00 0.00 36.38 2.90
4742 14153 3.069872 CCAAGAGGAGATCAGTCATGAGG 59.930 52.174 0.00 0.00 36.38 3.86
4744 14155 7.187439 CCAAGAGGAGATCAGTCATGAGGAC 62.187 52.000 0.00 0.00 41.65 3.85
4752 14163 3.165606 GTCATGAGGACTGCCCAAG 57.834 57.895 0.00 0.00 43.46 3.61
4754 14165 0.615331 TCATGAGGACTGCCCAAGAC 59.385 55.000 0.00 0.00 37.41 3.01
4755 14166 0.393537 CATGAGGACTGCCCAAGACC 60.394 60.000 0.00 0.00 40.66 3.85
4759 14170 2.948386 GGACTGCCCAAGACCTTTC 58.052 57.895 0.00 0.00 37.70 2.62
4760 14171 0.609406 GGACTGCCCAAGACCTTTCC 60.609 60.000 0.00 0.00 37.70 3.13
4762 14173 0.111253 ACTGCCCAAGACCTTTCCTG 59.889 55.000 0.00 0.00 0.00 3.86
4765 14176 1.777878 TGCCCAAGACCTTTCCTGTAA 59.222 47.619 0.00 0.00 0.00 2.41
4766 14177 2.378547 TGCCCAAGACCTTTCCTGTAAT 59.621 45.455 0.00 0.00 0.00 1.89
4767 14178 2.755103 GCCCAAGACCTTTCCTGTAATG 59.245 50.000 0.00 0.00 0.00 1.90
4768 14179 3.814316 GCCCAAGACCTTTCCTGTAATGT 60.814 47.826 0.00 0.00 0.00 2.71
4769 14180 3.758554 CCCAAGACCTTTCCTGTAATGTG 59.241 47.826 0.00 0.00 0.00 3.21
4770 14181 3.758554 CCAAGACCTTTCCTGTAATGTGG 59.241 47.826 0.00 0.00 0.00 4.17
4772 14183 4.724279 AGACCTTTCCTGTAATGTGGTT 57.276 40.909 0.00 0.00 0.00 3.67
4773 14184 5.061721 AGACCTTTCCTGTAATGTGGTTT 57.938 39.130 0.00 0.00 0.00 3.27
4774 14185 4.827284 AGACCTTTCCTGTAATGTGGTTTG 59.173 41.667 0.00 0.00 0.00 2.93
4776 14187 3.573967 CCTTTCCTGTAATGTGGTTTGCT 59.426 43.478 0.00 0.00 0.00 3.91
4777 14188 4.039124 CCTTTCCTGTAATGTGGTTTGCTT 59.961 41.667 0.00 0.00 0.00 3.91
4778 14189 4.582701 TTCCTGTAATGTGGTTTGCTTG 57.417 40.909 0.00 0.00 0.00 4.01
4779 14190 2.295909 TCCTGTAATGTGGTTTGCTTGC 59.704 45.455 0.00 0.00 0.00 4.01
4780 14191 2.035704 CCTGTAATGTGGTTTGCTTGCA 59.964 45.455 0.00 0.00 0.00 4.08
4781 14192 3.492309 CCTGTAATGTGGTTTGCTTGCAA 60.492 43.478 3.70 3.70 0.00 4.08
4783 14194 3.382865 TGTAATGTGGTTTGCTTGCAAGA 59.617 39.130 30.39 12.25 0.00 3.02
4785 14196 3.540314 ATGTGGTTTGCTTGCAAGAAA 57.460 38.095 30.39 23.58 0.00 2.52
4788 14199 5.016051 TGTGGTTTGCTTGCAAGAAATTA 57.984 34.783 30.39 9.14 0.00 1.40
4789 14200 5.423015 TGTGGTTTGCTTGCAAGAAATTAA 58.577 33.333 30.39 8.35 0.00 1.40
4790 14201 5.523188 TGTGGTTTGCTTGCAAGAAATTAAG 59.477 36.000 30.39 1.48 0.00 1.85
4793 14204 6.991531 TGGTTTGCTTGCAAGAAATTAAGATT 59.008 30.769 30.39 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 2957 1.026718 CCAGAATCACGCCAAGACCC 61.027 60.000 0.00 0.00 0.00 4.46
33 2958 0.036388 TCCAGAATCACGCCAAGACC 60.036 55.000 0.00 0.00 0.00 3.85
34 2959 1.936547 GATCCAGAATCACGCCAAGAC 59.063 52.381 0.00 0.00 34.26 3.01
36 2961 1.303309 GGATCCAGAATCACGCCAAG 58.697 55.000 6.95 0.00 35.96 3.61
37 2962 0.617935 TGGATCCAGAATCACGCCAA 59.382 50.000 11.44 0.00 35.96 4.52
38 2963 0.617935 TTGGATCCAGAATCACGCCA 59.382 50.000 15.53 0.00 35.96 5.69
47 2977 2.564771 GAATGCGATGTTGGATCCAGA 58.435 47.619 15.53 6.26 0.00 3.86
62 2992 2.548480 GGAGTAAGGGTTATGCGAATGC 59.452 50.000 0.00 0.00 43.20 3.56
68 2998 4.423625 ACTGATGGAGTAAGGGTTATGC 57.576 45.455 0.00 0.00 30.86 3.14
79 3009 6.769512 ACTTGTGTTACATTACTGATGGAGT 58.230 36.000 0.00 0.00 40.21 3.85
123 3057 2.202756 GACGCATGTCCCTCGTCC 60.203 66.667 10.56 0.00 44.62 4.79
175 3113 0.098552 CGTTTGTGCAGTGCAGACAA 59.901 50.000 20.42 17.25 40.08 3.18
179 3117 2.723271 CGCGTTTGTGCAGTGCAG 60.723 61.111 20.42 7.56 40.08 4.41
187 3125 1.057822 CATCGAGAGCGCGTTTGTG 59.942 57.895 8.43 0.00 37.46 3.33
188 3126 2.094659 CCATCGAGAGCGCGTTTGT 61.095 57.895 8.43 0.00 37.46 2.83
189 3127 2.697425 CCATCGAGAGCGCGTTTG 59.303 61.111 8.43 0.00 37.46 2.93
190 3128 2.509336 CCCATCGAGAGCGCGTTT 60.509 61.111 8.43 0.00 37.46 3.60
191 3129 4.514577 CCCCATCGAGAGCGCGTT 62.515 66.667 8.43 0.00 37.46 4.84
224 3188 3.853330 CCGATTCGCCTGCGTGTG 61.853 66.667 11.68 0.71 40.74 3.82
254 3237 4.812476 TCGCCCCGATGCTCGTTG 62.812 66.667 5.15 0.00 38.40 4.10
272 3322 2.126228 TCACGCCGCTTCCTAACG 60.126 61.111 0.00 0.00 0.00 3.18
274 3324 1.823169 AACCTCACGCCGCTTCCTAA 61.823 55.000 0.00 0.00 0.00 2.69
302 3368 2.618442 CCAGATTTCTCTCCTCTGGC 57.382 55.000 4.99 0.00 46.89 4.85
308 3374 3.103742 AGAGACCACCAGATTTCTCTCC 58.896 50.000 0.00 0.00 40.72 3.71
326 3394 7.211966 ACAAGAACAAAAATCTCCATGAGAG 57.788 36.000 0.00 0.00 42.26 3.20
430 3513 3.836365 TTTCTTTTTGGCAGGGGAAAG 57.164 42.857 7.82 7.82 0.00 2.62
441 3524 6.128661 GCGGCTAGGGTTTTATTTTCTTTTTG 60.129 38.462 0.00 0.00 0.00 2.44
447 3534 2.100252 GGGCGGCTAGGGTTTTATTTTC 59.900 50.000 9.56 0.00 0.00 2.29
448 3535 2.104967 GGGCGGCTAGGGTTTTATTTT 58.895 47.619 9.56 0.00 0.00 1.82
449 3536 1.687054 GGGGCGGCTAGGGTTTTATTT 60.687 52.381 9.56 0.00 0.00 1.40
450 3537 0.106369 GGGGCGGCTAGGGTTTTATT 60.106 55.000 9.56 0.00 0.00 1.40
451 3538 1.283381 TGGGGCGGCTAGGGTTTTAT 61.283 55.000 9.56 0.00 0.00 1.40
452 3539 1.924423 TGGGGCGGCTAGGGTTTTA 60.924 57.895 9.56 0.00 0.00 1.52
473 3560 5.549228 TGGATAACTAGATCTGCCATGGATT 59.451 40.000 18.40 0.00 0.00 3.01
494 3795 2.933495 CGACTCGGAAGTATTGTGGA 57.067 50.000 0.00 0.00 35.28 4.02
589 3918 3.286751 GCACGAGCTGTTTGCCCA 61.287 61.111 0.00 0.00 44.23 5.36
593 3922 2.671177 CCGAGGCACGAGCTGTTTG 61.671 63.158 5.74 0.00 45.77 2.93
767 4117 1.195674 GCACCTCTTGACGAAGAAAGC 59.804 52.381 0.00 0.00 37.77 3.51
839 4230 7.439056 TGCATTTGGAACTTCAATTCTTTCTTC 59.561 33.333 0.00 0.00 0.00 2.87
842 4233 6.479660 TGTGCATTTGGAACTTCAATTCTTTC 59.520 34.615 0.00 0.00 0.00 2.62
844 4235 5.916318 TGTGCATTTGGAACTTCAATTCTT 58.084 33.333 0.00 0.00 0.00 2.52
846 4237 6.203338 ACAATGTGCATTTGGAACTTCAATTC 59.797 34.615 14.53 0.00 0.00 2.17
847 4238 6.017770 CACAATGTGCATTTGGAACTTCAATT 60.018 34.615 14.53 0.00 0.00 2.32
848 4239 5.467399 CACAATGTGCATTTGGAACTTCAAT 59.533 36.000 14.53 0.00 0.00 2.57
849 4240 4.809958 CACAATGTGCATTTGGAACTTCAA 59.190 37.500 14.53 0.00 0.00 2.69
850 4241 4.370049 CACAATGTGCATTTGGAACTTCA 58.630 39.130 14.53 0.00 0.00 3.02
851 4242 3.742369 CCACAATGTGCATTTGGAACTTC 59.258 43.478 8.05 0.00 34.15 3.01
871 4262 0.625316 ACCTAATGCCATGCACTCCA 59.375 50.000 0.00 0.00 43.04 3.86
877 4268 3.278574 TGTACTTGACCTAATGCCATGC 58.721 45.455 0.00 0.00 0.00 4.06
1013 4413 7.348274 ACTCATCCCATAGGTTCAATCTTTCTA 59.652 37.037 0.00 0.00 0.00 2.10
1014 4414 6.159398 ACTCATCCCATAGGTTCAATCTTTCT 59.841 38.462 0.00 0.00 0.00 2.52
1044 4444 6.655003 TCTCCTCATCATCCAAAAGTTTGTAC 59.345 38.462 3.26 0.00 36.45 2.90
1098 4611 2.128035 GTTACCATCGCATCTCGGAAG 58.872 52.381 0.00 0.00 39.05 3.46
1163 4893 7.819900 ACGCAGAATTGAAAGTAGAAGATAGTT 59.180 33.333 0.00 0.00 0.00 2.24
1281 5043 9.166173 TCAAGGTGTATCTTTGTCTTTATGATG 57.834 33.333 0.00 0.00 35.15 3.07
1335 5298 7.815383 AGATTGGATGGATGGACAGTTTATAA 58.185 34.615 0.00 0.00 0.00 0.98
1336 5299 7.392766 AGATTGGATGGATGGACAGTTTATA 57.607 36.000 0.00 0.00 0.00 0.98
1369 5332 7.379059 TCTGGGAATATCTGCAGAAAGATAA 57.621 36.000 22.50 3.39 41.35 1.75
1370 5333 7.290948 TCTTCTGGGAATATCTGCAGAAAGATA 59.709 37.037 22.50 8.98 42.03 1.98
1460 5429 2.343101 GCAACCACAATAGCGTGACTA 58.657 47.619 0.00 0.00 39.34 2.59
1566 5535 5.418840 ACTGGCAGTTCCCATTGTATTTTAG 59.581 40.000 15.88 0.00 33.64 1.85
1744 5719 7.869937 TGCAAAATCCATTCGAAGTGAAATTTA 59.130 29.630 3.35 0.00 40.71 1.40
1921 5896 4.666512 AGGAGTGTTACTGCATTTGGAAT 58.333 39.130 3.38 0.00 39.19 3.01
1922 5897 4.098914 AGGAGTGTTACTGCATTTGGAA 57.901 40.909 3.38 0.00 39.19 3.53
1923 5898 3.788227 AGGAGTGTTACTGCATTTGGA 57.212 42.857 3.38 0.00 39.19 3.53
1924 5899 4.853924 AAAGGAGTGTTACTGCATTTGG 57.146 40.909 3.38 0.00 39.19 3.28
1925 5900 8.081633 TGATAAAAAGGAGTGTTACTGCATTTG 58.918 33.333 4.84 0.00 36.66 2.32
1926 5901 8.177119 TGATAAAAAGGAGTGTTACTGCATTT 57.823 30.769 3.38 1.14 38.71 2.32
1927 5902 7.448469 ACTGATAAAAAGGAGTGTTACTGCATT 59.552 33.333 3.38 0.00 39.19 3.56
1928 5903 6.942576 ACTGATAAAAAGGAGTGTTACTGCAT 59.057 34.615 3.38 0.00 39.19 3.96
2081 8591 7.014518 TCGATTCAATCCAGGCATCAAATTAAT 59.985 33.333 0.00 0.00 0.00 1.40
2106 8616 3.012518 ACCTGAATGTGCTACAATGCTC 58.987 45.455 0.00 0.00 0.00 4.26
2320 8913 7.840342 TTTGCTTCAAGTATCATCTCTCTTC 57.160 36.000 0.00 0.00 0.00 2.87
2460 9055 5.102953 TGGGAGTTTCCATTGTATCTGAG 57.897 43.478 0.00 0.00 38.64 3.35
2588 9214 2.734755 TGGGCTGAGGATGTAAATGG 57.265 50.000 0.00 0.00 0.00 3.16
3457 11361 0.381089 GCAGCTGAAGATCCATGTGC 59.619 55.000 20.43 0.00 0.00 4.57
3464 11368 1.132643 CTTGCCAAGCAGCTGAAGATC 59.867 52.381 20.43 0.00 40.61 2.75
3648 11558 3.332034 ACACCTGCCGAGTAATTGTAAC 58.668 45.455 0.00 0.00 0.00 2.50
3800 11711 4.202461 TGGGGTAACATCATCTTCATAGCC 60.202 45.833 0.00 0.00 39.74 3.93
3880 11809 1.460273 TTCCCCAGAGCGCAAAAACC 61.460 55.000 11.47 0.00 0.00 3.27
3912 11845 3.951775 ACAGAGCCCTTATGATCGATC 57.048 47.619 18.72 18.72 0.00 3.69
4068 12076 0.459934 TGCAACCACAAAAGCAGCAC 60.460 50.000 0.00 0.00 32.48 4.40
4084 12092 6.469139 TCACGATAACGAAATAAAACTGCA 57.531 33.333 0.00 0.00 42.66 4.41
4087 12095 9.093970 TCATCATCACGATAACGAAATAAAACT 57.906 29.630 0.00 0.00 42.66 2.66
4108 12122 3.052566 AGGACCAGACTCCACTATCATCA 60.053 47.826 0.00 0.00 31.94 3.07
4109 12123 3.571590 AGGACCAGACTCCACTATCATC 58.428 50.000 0.00 0.00 31.94 2.92
4110 12124 3.697190 AGGACCAGACTCCACTATCAT 57.303 47.619 0.00 0.00 31.94 2.45
4156 12176 4.401022 ACATGGCATATCGATCAATTGGT 58.599 39.130 0.00 0.00 0.00 3.67
4242 13653 1.932160 CGATTCACGAACCAACAACG 58.068 50.000 0.00 0.00 45.77 4.10
4525 13936 3.056628 CCGTCAAGGAGATGACTGC 57.943 57.895 5.96 0.00 45.98 4.40
4527 13938 0.534412 CTGCCGTCAAGGAGATGACT 59.466 55.000 5.96 0.00 45.98 3.41
4528 13939 1.086634 GCTGCCGTCAAGGAGATGAC 61.087 60.000 0.00 0.00 45.00 3.06
4529 13940 1.219124 GCTGCCGTCAAGGAGATGA 59.781 57.895 0.00 0.00 45.00 2.92
4530 13941 2.169789 CGCTGCCGTCAAGGAGATG 61.170 63.158 0.00 0.00 45.00 2.90
4531 13942 2.185350 CGCTGCCGTCAAGGAGAT 59.815 61.111 0.00 0.00 45.00 2.75
4532 13943 2.989253 TCGCTGCCGTCAAGGAGA 60.989 61.111 0.00 0.00 45.00 3.71
4533 13944 2.811317 GTCGCTGCCGTCAAGGAG 60.811 66.667 0.00 0.00 45.00 3.69
4534 13945 4.373116 GGTCGCTGCCGTCAAGGA 62.373 66.667 0.00 0.00 45.00 3.36
4535 13946 4.680237 TGGTCGCTGCCGTCAAGG 62.680 66.667 0.00 0.00 44.97 3.61
4536 13947 3.414700 GTGGTCGCTGCCGTCAAG 61.415 66.667 0.00 0.00 35.54 3.02
4537 13948 3.858868 GAGTGGTCGCTGCCGTCAA 62.859 63.158 0.00 0.00 35.54 3.18
4538 13949 4.357947 GAGTGGTCGCTGCCGTCA 62.358 66.667 0.00 0.00 35.54 4.35
4542 13953 4.767255 CCAGGAGTGGTCGCTGCC 62.767 72.222 0.00 0.00 39.30 4.85
4543 13954 4.767255 CCCAGGAGTGGTCGCTGC 62.767 72.222 0.00 0.00 43.23 5.25
4546 13957 1.827399 TTCTTCCCAGGAGTGGTCGC 61.827 60.000 0.00 0.00 43.23 5.19
4547 13958 0.247736 CTTCTTCCCAGGAGTGGTCG 59.752 60.000 0.00 0.00 43.23 4.79
4548 13959 1.645710 TCTTCTTCCCAGGAGTGGTC 58.354 55.000 0.00 0.00 43.23 4.02
4550 13961 2.260822 TCTTCTTCTTCCCAGGAGTGG 58.739 52.381 0.00 0.00 44.56 4.00
4551 13962 3.867984 GCTTCTTCTTCTTCCCAGGAGTG 60.868 52.174 0.00 0.00 0.00 3.51
4553 13964 2.304180 TGCTTCTTCTTCTTCCCAGGAG 59.696 50.000 0.00 0.00 0.00 3.69
4554 13965 2.304180 CTGCTTCTTCTTCTTCCCAGGA 59.696 50.000 0.00 0.00 0.00 3.86
4555 13966 2.617532 CCTGCTTCTTCTTCTTCCCAGG 60.618 54.545 0.00 0.00 33.47 4.45
4556 13967 2.709213 CCTGCTTCTTCTTCTTCCCAG 58.291 52.381 0.00 0.00 0.00 4.45
4558 13969 1.271597 TGCCTGCTTCTTCTTCTTCCC 60.272 52.381 0.00 0.00 0.00 3.97
4559 13970 2.191128 TGCCTGCTTCTTCTTCTTCC 57.809 50.000 0.00 0.00 0.00 3.46
4560 13971 2.487372 CCTTGCCTGCTTCTTCTTCTTC 59.513 50.000 0.00 0.00 0.00 2.87
4561 13972 2.512705 CCTTGCCTGCTTCTTCTTCTT 58.487 47.619 0.00 0.00 0.00 2.52
4562 13973 1.885790 GCCTTGCCTGCTTCTTCTTCT 60.886 52.381 0.00 0.00 0.00 2.85
4563 13974 0.525311 GCCTTGCCTGCTTCTTCTTC 59.475 55.000 0.00 0.00 0.00 2.87
4564 13975 1.239968 CGCCTTGCCTGCTTCTTCTT 61.240 55.000 0.00 0.00 0.00 2.52
4566 13977 2.694760 CCGCCTTGCCTGCTTCTTC 61.695 63.158 0.00 0.00 0.00 2.87
4567 13978 2.674380 CCGCCTTGCCTGCTTCTT 60.674 61.111 0.00 0.00 0.00 2.52
4577 13988 3.869272 GATGTCGCAGCCGCCTTG 61.869 66.667 0.00 0.00 33.11 3.61
4580 13991 3.567797 GAAGATGTCGCAGCCGCC 61.568 66.667 0.00 0.00 33.11 6.13
4581 13992 3.918220 CGAAGATGTCGCAGCCGC 61.918 66.667 0.00 0.00 44.14 6.53
4603 14014 1.741770 GTTGTAGCCAGAGCACCGG 60.742 63.158 0.00 0.00 43.56 5.28
4604 14015 2.094659 CGTTGTAGCCAGAGCACCG 61.095 63.158 0.00 0.00 43.56 4.94
4605 14016 1.741770 CCGTTGTAGCCAGAGCACC 60.742 63.158 0.00 0.00 43.56 5.01
4606 14017 2.391389 GCCGTTGTAGCCAGAGCAC 61.391 63.158 0.00 0.00 43.56 4.40
4614 14025 1.912371 GCTGTTCAGGCCGTTGTAGC 61.912 60.000 0.00 2.53 0.00 3.58
4615 14026 0.320771 AGCTGTTCAGGCCGTTGTAG 60.321 55.000 0.00 0.00 0.00 2.74
4616 14027 0.107831 AAGCTGTTCAGGCCGTTGTA 59.892 50.000 0.00 0.00 0.00 2.41
4617 14028 1.152963 AAGCTGTTCAGGCCGTTGT 60.153 52.632 0.00 0.00 0.00 3.32
4618 14029 1.165907 TGAAGCTGTTCAGGCCGTTG 61.166 55.000 0.00 0.00 37.79 4.10
4620 14031 1.598130 GTGAAGCTGTTCAGGCCGT 60.598 57.895 0.00 0.00 43.55 5.68
4621 14032 1.294659 GAGTGAAGCTGTTCAGGCCG 61.295 60.000 0.00 0.00 43.55 6.13
4623 14034 0.601311 ACGAGTGAAGCTGTTCAGGC 60.601 55.000 0.00 0.00 43.55 4.85
4624 14035 1.871080 AACGAGTGAAGCTGTTCAGG 58.129 50.000 0.00 0.00 43.55 3.86
4625 14036 2.866156 TCAAACGAGTGAAGCTGTTCAG 59.134 45.455 0.00 0.00 43.55 3.02
4626 14037 2.899976 TCAAACGAGTGAAGCTGTTCA 58.100 42.857 0.00 0.00 40.55 3.18
4627 14038 4.474226 AATCAAACGAGTGAAGCTGTTC 57.526 40.909 0.00 0.00 0.00 3.18
4630 14041 3.499918 AGGAAATCAAACGAGTGAAGCTG 59.500 43.478 0.00 0.00 0.00 4.24
4631 14042 3.499918 CAGGAAATCAAACGAGTGAAGCT 59.500 43.478 0.00 0.00 0.00 3.74
4632 14043 3.251004 ACAGGAAATCAAACGAGTGAAGC 59.749 43.478 0.00 0.00 0.00 3.86
4633 14044 4.273480 ACACAGGAAATCAAACGAGTGAAG 59.727 41.667 0.00 0.00 0.00 3.02
4635 14046 3.804036 ACACAGGAAATCAAACGAGTGA 58.196 40.909 0.00 0.00 0.00 3.41
4636 14047 4.552166 AACACAGGAAATCAAACGAGTG 57.448 40.909 0.00 0.00 0.00 3.51
4638 14049 6.591834 AGAGATAACACAGGAAATCAAACGAG 59.408 38.462 0.00 0.00 0.00 4.18
4641 14052 7.440523 ACAGAGATAACACAGGAAATCAAAC 57.559 36.000 0.00 0.00 0.00 2.93
4643 14054 7.939039 AGAAACAGAGATAACACAGGAAATCAA 59.061 33.333 0.00 0.00 0.00 2.57
4644 14055 7.453393 AGAAACAGAGATAACACAGGAAATCA 58.547 34.615 0.00 0.00 0.00 2.57
4645 14056 7.913674 AGAAACAGAGATAACACAGGAAATC 57.086 36.000 0.00 0.00 0.00 2.17
4646 14057 9.965902 ATAAGAAACAGAGATAACACAGGAAAT 57.034 29.630 0.00 0.00 0.00 2.17
4647 14058 9.219603 CATAAGAAACAGAGATAACACAGGAAA 57.780 33.333 0.00 0.00 0.00 3.13
4649 14060 7.180229 TCCATAAGAAACAGAGATAACACAGGA 59.820 37.037 0.00 0.00 0.00 3.86
4650 14061 7.331026 TCCATAAGAAACAGAGATAACACAGG 58.669 38.462 0.00 0.00 0.00 4.00
4651 14062 8.954950 ATCCATAAGAAACAGAGATAACACAG 57.045 34.615 0.00 0.00 0.00 3.66
4652 14063 9.739276 AAATCCATAAGAAACAGAGATAACACA 57.261 29.630 0.00 0.00 0.00 3.72
4656 14067 9.561069 GGCTAAATCCATAAGAAACAGAGATAA 57.439 33.333 0.00 0.00 0.00 1.75
4657 14068 8.713971 TGGCTAAATCCATAAGAAACAGAGATA 58.286 33.333 0.00 0.00 0.00 1.98
4658 14069 7.577303 TGGCTAAATCCATAAGAAACAGAGAT 58.423 34.615 0.00 0.00 0.00 2.75
4660 14071 7.718753 AGATGGCTAAATCCATAAGAAACAGAG 59.281 37.037 0.00 0.00 46.29 3.35
4662 14073 7.814264 AGATGGCTAAATCCATAAGAAACAG 57.186 36.000 0.00 0.00 46.29 3.16
4668 14079 8.571336 CCAACTTAAGATGGCTAAATCCATAAG 58.429 37.037 17.78 0.00 46.29 1.73
4670 14081 7.811282 TCCAACTTAAGATGGCTAAATCCATA 58.189 34.615 23.40 3.17 46.29 2.74
4672 14083 6.073447 TCCAACTTAAGATGGCTAAATCCA 57.927 37.500 23.40 4.48 37.82 3.41
4673 14084 7.068716 ACATTCCAACTTAAGATGGCTAAATCC 59.931 37.037 23.40 0.00 37.82 3.01
4674 14085 8.000780 ACATTCCAACTTAAGATGGCTAAATC 57.999 34.615 23.40 0.00 37.82 2.17
4675 14086 7.961326 ACATTCCAACTTAAGATGGCTAAAT 57.039 32.000 23.40 16.06 37.82 1.40
4676 14087 7.775053 AACATTCCAACTTAAGATGGCTAAA 57.225 32.000 23.40 14.71 37.82 1.85
4678 14089 7.857456 TCTAACATTCCAACTTAAGATGGCTA 58.143 34.615 23.40 15.29 37.82 3.93
4681 14092 7.112779 ACCTCTAACATTCCAACTTAAGATGG 58.887 38.462 22.48 22.48 39.10 3.51
4684 14095 7.554959 AGACCTCTAACATTCCAACTTAAGA 57.445 36.000 10.09 0.00 0.00 2.10
4685 14096 8.507249 CAAAGACCTCTAACATTCCAACTTAAG 58.493 37.037 0.00 0.00 0.00 1.85
4688 14099 5.241728 GCAAAGACCTCTAACATTCCAACTT 59.758 40.000 0.00 0.00 0.00 2.66
4690 14101 4.518970 TGCAAAGACCTCTAACATTCCAAC 59.481 41.667 0.00 0.00 0.00 3.77
4692 14103 4.365514 TGCAAAGACCTCTAACATTCCA 57.634 40.909 0.00 0.00 0.00 3.53
4693 14104 5.904362 ATTGCAAAGACCTCTAACATTCC 57.096 39.130 1.71 0.00 0.00 3.01
4694 14105 6.913170 TGAATTGCAAAGACCTCTAACATTC 58.087 36.000 1.71 0.00 0.00 2.67
4697 14108 4.216257 GCTGAATTGCAAAGACCTCTAACA 59.784 41.667 1.71 0.00 0.00 2.41
4698 14109 4.379918 GGCTGAATTGCAAAGACCTCTAAC 60.380 45.833 1.71 0.00 34.04 2.34
4700 14111 3.244875 TGGCTGAATTGCAAAGACCTCTA 60.245 43.478 1.71 0.00 34.04 2.43
4701 14112 2.165998 GGCTGAATTGCAAAGACCTCT 58.834 47.619 1.71 0.00 34.04 3.69
4702 14113 1.888512 TGGCTGAATTGCAAAGACCTC 59.111 47.619 1.71 0.00 34.04 3.85
4703 14114 1.999648 TGGCTGAATTGCAAAGACCT 58.000 45.000 1.71 0.00 34.04 3.85
4704 14115 2.297033 TCTTGGCTGAATTGCAAAGACC 59.703 45.455 1.71 3.40 45.10 3.85
4705 14116 3.572584 CTCTTGGCTGAATTGCAAAGAC 58.427 45.455 1.71 0.00 45.10 3.01
4707 14118 2.559668 TCCTCTTGGCTGAATTGCAAAG 59.440 45.455 1.71 0.00 43.43 2.77
4708 14119 2.559668 CTCCTCTTGGCTGAATTGCAAA 59.440 45.455 1.71 0.00 34.04 3.68
4709 14120 2.165167 CTCCTCTTGGCTGAATTGCAA 58.835 47.619 0.00 0.00 34.04 4.08
4711 14122 2.119801 TCTCCTCTTGGCTGAATTGC 57.880 50.000 0.00 0.00 0.00 3.56
4712 14123 3.878103 CTGATCTCCTCTTGGCTGAATTG 59.122 47.826 0.00 0.00 0.00 2.32
4713 14124 3.522750 ACTGATCTCCTCTTGGCTGAATT 59.477 43.478 0.00 0.00 0.00 2.17
4714 14125 3.113824 ACTGATCTCCTCTTGGCTGAAT 58.886 45.455 0.00 0.00 0.00 2.57
4716 14127 2.106566 GACTGATCTCCTCTTGGCTGA 58.893 52.381 0.00 0.00 0.00 4.26
4717 14128 1.829849 TGACTGATCTCCTCTTGGCTG 59.170 52.381 0.00 0.00 0.00 4.85
4718 14129 2.244486 TGACTGATCTCCTCTTGGCT 57.756 50.000 0.00 0.00 0.00 4.75
4719 14130 2.433604 TCATGACTGATCTCCTCTTGGC 59.566 50.000 0.00 0.00 0.00 4.52
4720 14131 3.069872 CCTCATGACTGATCTCCTCTTGG 59.930 52.174 0.00 0.00 0.00 3.61
4721 14132 3.959449 TCCTCATGACTGATCTCCTCTTG 59.041 47.826 0.00 0.00 0.00 3.02
4722 14133 3.960102 GTCCTCATGACTGATCTCCTCTT 59.040 47.826 0.00 0.00 41.03 2.85
4723 14134 3.565307 GTCCTCATGACTGATCTCCTCT 58.435 50.000 0.00 0.00 41.03 3.69
4734 14145 0.615331 TCTTGGGCAGTCCTCATGAC 59.385 55.000 0.00 0.00 44.82 3.06
4735 14146 0.615331 GTCTTGGGCAGTCCTCATGA 59.385 55.000 0.00 0.00 36.20 3.07
4736 14147 0.393537 GGTCTTGGGCAGTCCTCATG 60.394 60.000 0.00 0.00 36.20 3.07
4738 14149 0.768221 AAGGTCTTGGGCAGTCCTCA 60.768 55.000 0.00 0.00 39.94 3.86
4739 14150 0.402121 AAAGGTCTTGGGCAGTCCTC 59.598 55.000 0.00 0.00 39.94 3.71
4740 14151 0.402121 GAAAGGTCTTGGGCAGTCCT 59.598 55.000 0.00 0.00 42.44 3.85
4741 14152 0.609406 GGAAAGGTCTTGGGCAGTCC 60.609 60.000 0.00 0.00 0.00 3.85
4742 14153 0.402121 AGGAAAGGTCTTGGGCAGTC 59.598 55.000 0.00 0.00 0.00 3.51
4744 14155 0.111253 ACAGGAAAGGTCTTGGGCAG 59.889 55.000 0.00 0.00 35.20 4.85
4745 14156 1.440618 TACAGGAAAGGTCTTGGGCA 58.559 50.000 0.00 0.00 35.20 5.36
4746 14157 2.579410 TTACAGGAAAGGTCTTGGGC 57.421 50.000 0.00 0.00 35.20 5.36
4749 14160 4.398319 ACCACATTACAGGAAAGGTCTTG 58.602 43.478 0.00 0.00 36.91 3.02
4750 14161 4.724279 ACCACATTACAGGAAAGGTCTT 57.276 40.909 0.00 0.00 0.00 3.01
4752 14163 4.558697 GCAAACCACATTACAGGAAAGGTC 60.559 45.833 0.00 0.00 0.00 3.85
4754 14165 3.573967 AGCAAACCACATTACAGGAAAGG 59.426 43.478 0.00 0.00 0.00 3.11
4755 14166 4.853924 AGCAAACCACATTACAGGAAAG 57.146 40.909 0.00 0.00 0.00 2.62
4756 14167 4.739137 GCAAGCAAACCACATTACAGGAAA 60.739 41.667 0.00 0.00 0.00 3.13
4757 14168 3.243704 GCAAGCAAACCACATTACAGGAA 60.244 43.478 0.00 0.00 0.00 3.36
4758 14169 2.295909 GCAAGCAAACCACATTACAGGA 59.704 45.455 0.00 0.00 0.00 3.86
4759 14170 2.035704 TGCAAGCAAACCACATTACAGG 59.964 45.455 0.00 0.00 0.00 4.00
4760 14171 3.367992 TGCAAGCAAACCACATTACAG 57.632 42.857 0.00 0.00 0.00 2.74
4762 14173 3.976169 TCTTGCAAGCAAACCACATTAC 58.024 40.909 21.99 0.00 35.33 1.89
4765 14176 3.540314 TTTCTTGCAAGCAAACCACAT 57.460 38.095 21.99 0.00 35.33 3.21
4766 14177 3.540314 ATTTCTTGCAAGCAAACCACA 57.460 38.095 21.99 0.00 35.33 4.17
4767 14178 5.752955 TCTTAATTTCTTGCAAGCAAACCAC 59.247 36.000 21.99 0.00 35.33 4.16
4768 14179 5.911752 TCTTAATTTCTTGCAAGCAAACCA 58.088 33.333 21.99 10.76 35.33 3.67
4769 14180 7.425577 AATCTTAATTTCTTGCAAGCAAACC 57.574 32.000 21.99 0.00 35.33 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.