Multiple sequence alignment - TraesCS5A01G438400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G438400 chr5A 100.000 2585 0 0 1 2585 619775800 619773216 0.000000e+00 4774.0
1 TraesCS5A01G438400 chr4D 95.275 2180 90 7 411 2585 502108821 502106650 0.000000e+00 3443.0
2 TraesCS5A01G438400 chr4D 82.424 165 29 0 225 389 12340564 12340728 7.460000e-31 145.0
3 TraesCS5A01G438400 chr3D 94.833 2187 96 8 408 2585 553937356 553935178 0.000000e+00 3397.0
4 TraesCS5A01G438400 chr1D 94.783 2185 96 8 409 2585 430108486 430110660 0.000000e+00 3387.0
5 TraesCS5A01G438400 chr2A 94.595 2183 107 9 409 2585 704738836 704736659 0.000000e+00 3367.0
6 TraesCS5A01G438400 chr7A 94.638 2182 99 10 410 2585 661594029 661591860 0.000000e+00 3365.0
7 TraesCS5A01G438400 chr7A 74.941 423 88 13 3 413 562886173 562885757 7.350000e-41 178.0
8 TraesCS5A01G438400 chr6D 93.946 2197 104 11 410 2585 449138063 449135875 0.000000e+00 3293.0
9 TraesCS5A01G438400 chr2D 93.796 2192 110 15 406 2585 498273314 498275491 0.000000e+00 3271.0
10 TraesCS5A01G438400 chr2D 83.051 177 29 1 233 409 591138837 591138662 2.660000e-35 159.0
11 TraesCS5A01G438400 chr3B 93.455 2185 122 9 408 2585 168094224 168096394 0.000000e+00 3223.0
12 TraesCS5A01G438400 chr7D 93.181 2185 129 12 411 2585 85019321 85021495 0.000000e+00 3192.0
13 TraesCS5A01G438400 chr7D 79.384 422 75 3 3 413 351980056 351979636 1.170000e-73 287.0
14 TraesCS5A01G438400 chr5D 91.981 424 23 5 1 413 495788629 495788206 3.710000e-163 584.0
15 TraesCS5A01G438400 chr5B 83.571 420 60 5 3 413 316404517 316404936 4.040000e-103 385.0
16 TraesCS5A01G438400 chr5B 75.135 185 42 3 125 307 337160640 337160822 1.650000e-12 84.2
17 TraesCS5A01G438400 chr4B 81.710 421 62 9 3 413 179841268 179840853 1.150000e-88 337.0
18 TraesCS5A01G438400 chr4B 75.355 422 85 10 3 412 19983142 19982728 4.390000e-43 185.0
19 TraesCS5A01G438400 chr7B 79.812 426 69 12 1 413 458457559 458457138 7.000000e-76 294.0
20 TraesCS5A01G438400 chr3A 78.960 423 76 7 3 413 741747857 741747436 2.530000e-70 276.0
21 TraesCS5A01G438400 chr6A 75.132 378 77 14 3 377 17382256 17382619 7.400000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G438400 chr5A 619773216 619775800 2584 True 4774 4774 100.000 1 2585 1 chr5A.!!$R1 2584
1 TraesCS5A01G438400 chr4D 502106650 502108821 2171 True 3443 3443 95.275 411 2585 1 chr4D.!!$R1 2174
2 TraesCS5A01G438400 chr3D 553935178 553937356 2178 True 3397 3397 94.833 408 2585 1 chr3D.!!$R1 2177
3 TraesCS5A01G438400 chr1D 430108486 430110660 2174 False 3387 3387 94.783 409 2585 1 chr1D.!!$F1 2176
4 TraesCS5A01G438400 chr2A 704736659 704738836 2177 True 3367 3367 94.595 409 2585 1 chr2A.!!$R1 2176
5 TraesCS5A01G438400 chr7A 661591860 661594029 2169 True 3365 3365 94.638 410 2585 1 chr7A.!!$R2 2175
6 TraesCS5A01G438400 chr6D 449135875 449138063 2188 True 3293 3293 93.946 410 2585 1 chr6D.!!$R1 2175
7 TraesCS5A01G438400 chr2D 498273314 498275491 2177 False 3271 3271 93.796 406 2585 1 chr2D.!!$F1 2179
8 TraesCS5A01G438400 chr3B 168094224 168096394 2170 False 3223 3223 93.455 408 2585 1 chr3B.!!$F1 2177
9 TraesCS5A01G438400 chr7D 85019321 85021495 2174 False 3192 3192 93.181 411 2585 1 chr7D.!!$F1 2174

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.028770 CGCTGTCGGAGAGATCTGTC 59.971 60.0 11.39 11.39 36.95 3.51 F
390 391 0.030908 CCTCCCGAGCGAGAACATAC 59.969 60.0 0.00 0.00 30.97 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1048 0.533531 TGCTGCTGCCTGGATTATCG 60.534 55.0 13.47 0.0 38.71 2.92 R
2307 2378 0.322648 TGCTTCTGCTTCAGCTGCTA 59.677 50.0 9.47 0.0 42.66 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.957288 GTTGGTAGGTGACTGGCAT 57.043 52.632 0.00 0.00 43.88 4.40
20 21 3.343941 GTTGGTAGGTGACTGGCATAA 57.656 47.619 0.00 0.00 43.88 1.90
21 22 3.681593 GTTGGTAGGTGACTGGCATAAA 58.318 45.455 0.00 0.00 43.88 1.40
22 23 3.627395 TGGTAGGTGACTGGCATAAAG 57.373 47.619 0.00 0.00 43.88 1.85
23 24 2.289565 GGTAGGTGACTGGCATAAAGC 58.710 52.381 0.00 0.00 43.88 3.51
24 25 2.355716 GGTAGGTGACTGGCATAAAGCA 60.356 50.000 0.00 0.00 44.07 3.91
25 26 3.545703 GTAGGTGACTGGCATAAAGCAT 58.454 45.455 0.00 0.00 44.07 3.79
26 27 3.313526 GTAGGTGACTGGCATAAAGCATG 59.686 47.826 0.00 0.00 44.07 4.06
27 28 3.685265 TAGGTGACTGGCATAAAGCATGG 60.685 47.826 0.00 0.00 44.07 3.66
28 29 6.158005 TAGGTGACTGGCATAAAGCATGGT 62.158 45.833 0.00 0.00 44.07 3.55
29 30 6.866762 TAGGTGACTGGCATAAAGCATGGTA 61.867 44.000 0.00 0.00 44.07 3.25
30 31 8.109161 TAGGTGACTGGCATAAAGCATGGTAT 62.109 42.308 0.00 0.00 44.07 2.73
36 37 3.877064 GCATAAAGCATGGTATGTCGTG 58.123 45.455 0.00 0.00 44.79 4.35
37 38 3.849645 GCATAAAGCATGGTATGTCGTGC 60.850 47.826 0.00 6.29 46.75 5.34
40 41 3.064079 GCATGGTATGTCGTGCTCA 57.936 52.632 0.00 0.00 43.98 4.26
41 42 0.652592 GCATGGTATGTCGTGCTCAC 59.347 55.000 0.00 0.00 43.98 3.51
42 43 1.290203 CATGGTATGTCGTGCTCACC 58.710 55.000 0.00 0.00 0.00 4.02
43 44 0.179111 ATGGTATGTCGTGCTCACCG 60.179 55.000 0.00 0.00 31.64 4.94
44 45 1.245376 TGGTATGTCGTGCTCACCGA 61.245 55.000 0.00 0.00 31.64 4.69
45 46 0.108992 GGTATGTCGTGCTCACCGAA 60.109 55.000 0.00 0.00 35.89 4.30
46 47 1.670674 GGTATGTCGTGCTCACCGAAA 60.671 52.381 0.00 0.00 35.89 3.46
47 48 2.063266 GTATGTCGTGCTCACCGAAAA 58.937 47.619 0.00 0.00 35.89 2.29
48 49 0.865769 ATGTCGTGCTCACCGAAAAC 59.134 50.000 0.00 0.00 35.89 2.43
49 50 0.179094 TGTCGTGCTCACCGAAAACT 60.179 50.000 0.00 0.00 35.89 2.66
50 51 0.507358 GTCGTGCTCACCGAAAACTC 59.493 55.000 0.00 0.00 35.89 3.01
51 52 0.599204 TCGTGCTCACCGAAAACTCC 60.599 55.000 0.00 0.00 0.00 3.85
52 53 1.860078 GTGCTCACCGAAAACTCCG 59.140 57.895 0.00 0.00 0.00 4.63
53 54 1.959226 TGCTCACCGAAAACTCCGC 60.959 57.895 0.00 0.00 0.00 5.54
54 55 1.668151 GCTCACCGAAAACTCCGCT 60.668 57.895 0.00 0.00 0.00 5.52
55 56 1.901650 GCTCACCGAAAACTCCGCTG 61.902 60.000 0.00 0.00 0.00 5.18
56 57 0.600255 CTCACCGAAAACTCCGCTGT 60.600 55.000 0.00 0.00 0.00 4.40
57 58 0.599204 TCACCGAAAACTCCGCTGTC 60.599 55.000 0.00 0.00 0.00 3.51
58 59 1.663702 ACCGAAAACTCCGCTGTCG 60.664 57.895 0.00 0.00 0.00 4.35
69 70 2.102554 CGCTGTCGGAGAGATCTGT 58.897 57.895 6.31 0.00 36.95 3.41
70 71 0.028770 CGCTGTCGGAGAGATCTGTC 59.971 60.000 11.39 11.39 36.95 3.51
71 72 1.098869 GCTGTCGGAGAGATCTGTCA 58.901 55.000 20.47 0.00 36.95 3.58
72 73 1.474478 GCTGTCGGAGAGATCTGTCAA 59.526 52.381 20.47 6.19 36.95 3.18
73 74 2.479389 GCTGTCGGAGAGATCTGTCAAG 60.479 54.545 20.47 13.72 36.95 3.02
74 75 3.013219 CTGTCGGAGAGATCTGTCAAGA 58.987 50.000 20.47 15.59 36.95 3.02
75 76 2.750166 TGTCGGAGAGATCTGTCAAGAC 59.250 50.000 26.55 26.55 36.95 3.01
76 77 2.750166 GTCGGAGAGATCTGTCAAGACA 59.250 50.000 27.48 2.56 36.95 3.41
77 78 2.750166 TCGGAGAGATCTGTCAAGACAC 59.250 50.000 20.47 2.32 36.21 3.67
78 79 2.477021 CGGAGAGATCTGTCAAGACACG 60.477 54.545 20.47 10.24 36.21 4.49
79 80 2.159310 GGAGAGATCTGTCAAGACACGG 60.159 54.545 20.47 0.00 36.21 4.94
80 81 2.490115 GAGAGATCTGTCAAGACACGGT 59.510 50.000 14.73 0.00 36.21 4.83
81 82 2.230025 AGAGATCTGTCAAGACACGGTG 59.770 50.000 0.00 6.58 36.21 4.94
82 83 1.964223 AGATCTGTCAAGACACGGTGT 59.036 47.619 14.66 14.66 36.21 4.16
83 84 2.365617 AGATCTGTCAAGACACGGTGTT 59.634 45.455 15.94 2.81 36.21 3.32
84 85 2.218953 TCTGTCAAGACACGGTGTTC 57.781 50.000 15.94 8.70 36.21 3.18
85 86 0.852777 CTGTCAAGACACGGTGTTCG 59.147 55.000 15.94 7.16 45.88 3.95
86 87 0.528901 TGTCAAGACACGGTGTTCGG 60.529 55.000 15.94 7.82 44.45 4.30
87 88 0.249155 GTCAAGACACGGTGTTCGGA 60.249 55.000 15.94 10.00 44.45 4.55
88 89 0.677288 TCAAGACACGGTGTTCGGAT 59.323 50.000 15.94 0.00 44.45 4.18
89 90 1.887854 TCAAGACACGGTGTTCGGATA 59.112 47.619 15.94 0.00 44.45 2.59
90 91 2.094906 TCAAGACACGGTGTTCGGATAG 60.095 50.000 15.94 2.39 44.45 2.08
91 92 1.542492 AGACACGGTGTTCGGATAGT 58.458 50.000 15.94 0.00 44.45 2.12
92 93 1.471684 AGACACGGTGTTCGGATAGTC 59.528 52.381 15.94 0.00 44.45 2.59
93 94 0.529378 ACACGGTGTTCGGATAGTCC 59.471 55.000 8.21 0.00 44.45 3.85
94 95 0.528924 CACGGTGTTCGGATAGTCCA 59.471 55.000 0.00 0.00 44.45 4.02
95 96 0.815734 ACGGTGTTCGGATAGTCCAG 59.184 55.000 0.00 0.00 44.45 3.86
96 97 0.815734 CGGTGTTCGGATAGTCCAGT 59.184 55.000 0.00 0.00 35.91 4.00
97 98 2.019249 CGGTGTTCGGATAGTCCAGTA 58.981 52.381 0.00 0.00 35.91 2.74
98 99 2.033049 CGGTGTTCGGATAGTCCAGTAG 59.967 54.545 0.00 0.00 35.91 2.57
99 100 2.223758 GGTGTTCGGATAGTCCAGTAGC 60.224 54.545 0.00 0.00 35.91 3.58
100 101 2.426024 GTGTTCGGATAGTCCAGTAGCA 59.574 50.000 0.00 0.00 35.91 3.49
101 102 2.426024 TGTTCGGATAGTCCAGTAGCAC 59.574 50.000 0.00 0.00 35.91 4.40
102 103 1.688772 TCGGATAGTCCAGTAGCACC 58.311 55.000 0.00 0.00 35.91 5.01
103 104 1.064240 TCGGATAGTCCAGTAGCACCA 60.064 52.381 0.00 0.00 35.91 4.17
104 105 1.338337 CGGATAGTCCAGTAGCACCAG 59.662 57.143 0.00 0.00 35.91 4.00
105 106 2.389715 GGATAGTCCAGTAGCACCAGT 58.610 52.381 0.00 0.00 36.28 4.00
106 107 2.101582 GGATAGTCCAGTAGCACCAGTG 59.898 54.545 0.00 0.00 36.28 3.66
107 108 1.557099 TAGTCCAGTAGCACCAGTGG 58.443 55.000 7.91 7.91 39.95 4.00
108 109 0.471971 AGTCCAGTAGCACCAGTGGT 60.472 55.000 9.70 9.70 44.31 4.16
109 110 1.203137 AGTCCAGTAGCACCAGTGGTA 60.203 52.381 16.22 5.63 41.96 3.25
110 111 1.621814 GTCCAGTAGCACCAGTGGTAA 59.378 52.381 16.22 0.19 43.97 2.85
111 112 1.899814 TCCAGTAGCACCAGTGGTAAG 59.100 52.381 16.22 4.68 43.97 2.34
112 113 1.066143 CCAGTAGCACCAGTGGTAAGG 60.066 57.143 16.22 11.89 43.97 2.69
113 114 0.613777 AGTAGCACCAGTGGTAAGGC 59.386 55.000 16.22 14.84 43.97 4.35
114 115 0.323629 GTAGCACCAGTGGTAAGGCA 59.676 55.000 21.46 8.06 43.97 4.75
115 116 1.060729 TAGCACCAGTGGTAAGGCAA 58.939 50.000 21.46 1.26 40.17 4.52
116 117 0.537371 AGCACCAGTGGTAAGGCAAC 60.537 55.000 21.46 4.76 39.83 4.17
117 118 1.524008 GCACCAGTGGTAAGGCAACC 61.524 60.000 16.22 2.29 40.19 3.77
118 119 0.110486 CACCAGTGGTAAGGCAACCT 59.890 55.000 16.22 0.00 40.44 3.50
119 120 0.110486 ACCAGTGGTAAGGCAACCTG 59.890 55.000 14.87 1.96 40.44 4.00
120 121 0.110486 CCAGTGGTAAGGCAACCTGT 59.890 55.000 0.00 0.00 40.44 4.00
121 122 1.349688 CCAGTGGTAAGGCAACCTGTA 59.650 52.381 0.00 0.00 40.44 2.74
122 123 2.615493 CCAGTGGTAAGGCAACCTGTAG 60.615 54.545 0.00 0.00 40.44 2.74
123 124 2.038557 CAGTGGTAAGGCAACCTGTAGT 59.961 50.000 10.01 0.00 40.44 2.73
124 125 2.038557 AGTGGTAAGGCAACCTGTAGTG 59.961 50.000 10.01 0.00 40.44 2.74
125 126 2.051692 TGGTAAGGCAACCTGTAGTGT 58.948 47.619 10.01 0.00 40.44 3.55
126 127 2.038033 TGGTAAGGCAACCTGTAGTGTC 59.962 50.000 10.01 0.00 40.44 3.67
127 128 2.038033 GGTAAGGCAACCTGTAGTGTCA 59.962 50.000 2.05 0.00 36.53 3.58
128 129 2.256117 AAGGCAACCTGTAGTGTCAC 57.744 50.000 0.00 0.00 32.13 3.67
129 130 1.424638 AGGCAACCTGTAGTGTCACT 58.575 50.000 10.99 10.99 29.57 3.41
130 131 1.344763 AGGCAACCTGTAGTGTCACTC 59.655 52.381 9.26 2.26 29.57 3.51
131 132 1.344763 GGCAACCTGTAGTGTCACTCT 59.655 52.381 9.26 0.00 0.00 3.24
132 133 2.610727 GGCAACCTGTAGTGTCACTCTC 60.611 54.545 9.26 5.03 0.00 3.20
133 134 2.297597 GCAACCTGTAGTGTCACTCTCT 59.702 50.000 9.26 0.00 0.00 3.10
134 135 3.858877 GCAACCTGTAGTGTCACTCTCTG 60.859 52.174 9.26 8.11 0.00 3.35
135 136 1.889829 ACCTGTAGTGTCACTCTCTGC 59.110 52.381 9.26 0.00 0.00 4.26
136 137 2.166829 CCTGTAGTGTCACTCTCTGCT 58.833 52.381 9.26 0.00 0.00 4.24
137 138 2.560542 CCTGTAGTGTCACTCTCTGCTT 59.439 50.000 9.26 0.00 0.00 3.91
138 139 3.573598 CTGTAGTGTCACTCTCTGCTTG 58.426 50.000 9.26 0.00 0.00 4.01
139 140 2.288457 TGTAGTGTCACTCTCTGCTTGC 60.288 50.000 9.26 0.00 0.00 4.01
140 141 0.034616 AGTGTCACTCTCTGCTTGCC 59.965 55.000 0.00 0.00 0.00 4.52
141 142 0.952984 GTGTCACTCTCTGCTTGCCC 60.953 60.000 0.00 0.00 0.00 5.36
142 143 1.372683 GTCACTCTCTGCTTGCCCA 59.627 57.895 0.00 0.00 0.00 5.36
143 144 0.250467 GTCACTCTCTGCTTGCCCAA 60.250 55.000 0.00 0.00 0.00 4.12
144 145 0.473755 TCACTCTCTGCTTGCCCAAA 59.526 50.000 0.00 0.00 0.00 3.28
145 146 1.133823 TCACTCTCTGCTTGCCCAAAA 60.134 47.619 0.00 0.00 0.00 2.44
146 147 1.268899 CACTCTCTGCTTGCCCAAAAG 59.731 52.381 0.00 0.00 0.00 2.27
147 148 1.133668 ACTCTCTGCTTGCCCAAAAGT 60.134 47.619 0.00 0.00 0.00 2.66
148 149 2.106511 ACTCTCTGCTTGCCCAAAAGTA 59.893 45.455 0.00 0.00 0.00 2.24
149 150 2.485814 CTCTCTGCTTGCCCAAAAGTAC 59.514 50.000 0.00 0.00 0.00 2.73
150 151 1.197721 CTCTGCTTGCCCAAAAGTACG 59.802 52.381 0.00 0.00 0.00 3.67
151 152 1.202710 TCTGCTTGCCCAAAAGTACGA 60.203 47.619 0.00 0.00 0.00 3.43
152 153 0.948678 TGCTTGCCCAAAAGTACGAC 59.051 50.000 0.00 0.00 0.00 4.34
153 154 0.110373 GCTTGCCCAAAAGTACGACG 60.110 55.000 0.00 0.00 0.00 5.12
154 155 1.504359 CTTGCCCAAAAGTACGACGA 58.496 50.000 0.00 0.00 0.00 4.20
155 156 1.868498 CTTGCCCAAAAGTACGACGAA 59.132 47.619 0.00 0.00 0.00 3.85
156 157 1.950828 TGCCCAAAAGTACGACGAAA 58.049 45.000 0.00 0.00 0.00 3.46
157 158 1.598601 TGCCCAAAAGTACGACGAAAC 59.401 47.619 0.00 0.00 0.00 2.78
158 159 1.869132 GCCCAAAAGTACGACGAAACT 59.131 47.619 0.00 1.42 0.00 2.66
159 160 2.349155 GCCCAAAAGTACGACGAAACTG 60.349 50.000 0.00 0.00 0.00 3.16
160 161 3.125316 CCCAAAAGTACGACGAAACTGA 58.875 45.455 0.00 0.00 0.00 3.41
161 162 3.556775 CCCAAAAGTACGACGAAACTGAA 59.443 43.478 0.00 0.00 0.00 3.02
162 163 4.212636 CCCAAAAGTACGACGAAACTGAAT 59.787 41.667 0.00 0.00 0.00 2.57
163 164 5.406175 CCCAAAAGTACGACGAAACTGAATA 59.594 40.000 0.00 0.00 0.00 1.75
164 165 6.091713 CCCAAAAGTACGACGAAACTGAATAT 59.908 38.462 0.00 0.00 0.00 1.28
165 166 7.360607 CCCAAAAGTACGACGAAACTGAATATT 60.361 37.037 0.00 0.00 0.00 1.28
166 167 7.477422 CCAAAAGTACGACGAAACTGAATATTG 59.523 37.037 0.00 6.42 0.00 1.90
167 168 5.697848 AGTACGACGAAACTGAATATTGC 57.302 39.130 0.00 0.00 0.00 3.56
168 169 5.165676 AGTACGACGAAACTGAATATTGCA 58.834 37.500 0.00 0.00 0.00 4.08
169 170 4.322101 ACGACGAAACTGAATATTGCAC 57.678 40.909 0.00 0.00 0.00 4.57
170 171 3.994392 ACGACGAAACTGAATATTGCACT 59.006 39.130 0.00 0.00 0.00 4.40
171 172 4.143115 ACGACGAAACTGAATATTGCACTG 60.143 41.667 0.00 0.00 0.00 3.66
172 173 4.143115 CGACGAAACTGAATATTGCACTGT 60.143 41.667 0.00 0.00 0.00 3.55
173 174 5.061684 CGACGAAACTGAATATTGCACTGTA 59.938 40.000 0.00 0.00 0.00 2.74
174 175 6.165659 ACGAAACTGAATATTGCACTGTAC 57.834 37.500 0.00 0.00 0.00 2.90
175 176 5.699001 ACGAAACTGAATATTGCACTGTACA 59.301 36.000 0.00 0.00 0.00 2.90
176 177 6.128553 ACGAAACTGAATATTGCACTGTACAG 60.129 38.462 21.44 21.44 0.00 2.74
177 178 6.090763 CGAAACTGAATATTGCACTGTACAGA 59.909 38.462 29.30 7.19 0.00 3.41
178 179 7.201556 CGAAACTGAATATTGCACTGTACAGAT 60.202 37.037 29.30 14.20 0.00 2.90
179 180 7.545362 AACTGAATATTGCACTGTACAGATC 57.455 36.000 29.30 18.63 0.00 2.75
180 181 5.750547 ACTGAATATTGCACTGTACAGATCG 59.249 40.000 29.30 16.81 0.00 3.69
181 182 5.901552 TGAATATTGCACTGTACAGATCGA 58.098 37.500 29.30 18.17 0.00 3.59
182 183 6.337356 TGAATATTGCACTGTACAGATCGAA 58.663 36.000 29.30 15.06 0.00 3.71
183 184 6.816140 TGAATATTGCACTGTACAGATCGAAA 59.184 34.615 29.30 16.77 0.00 3.46
184 185 6.834959 ATATTGCACTGTACAGATCGAAAG 57.165 37.500 29.30 10.14 0.00 2.62
185 186 2.959516 TGCACTGTACAGATCGAAAGG 58.040 47.619 29.30 8.58 0.00 3.11
186 187 1.661112 GCACTGTACAGATCGAAAGGC 59.339 52.381 29.30 13.83 0.00 4.35
187 188 2.271800 CACTGTACAGATCGAAAGGCC 58.728 52.381 29.30 0.00 0.00 5.19
188 189 1.899814 ACTGTACAGATCGAAAGGCCA 59.100 47.619 29.30 0.00 0.00 5.36
189 190 2.501723 ACTGTACAGATCGAAAGGCCAT 59.498 45.455 29.30 0.00 0.00 4.40
190 191 2.868583 CTGTACAGATCGAAAGGCCATG 59.131 50.000 18.45 0.00 0.00 3.66
191 192 2.213499 GTACAGATCGAAAGGCCATGG 58.787 52.381 7.63 7.63 0.00 3.66
192 193 0.911769 ACAGATCGAAAGGCCATGGA 59.088 50.000 18.40 0.00 0.00 3.41
193 194 1.281867 ACAGATCGAAAGGCCATGGAA 59.718 47.619 18.40 0.00 0.00 3.53
194 195 2.290896 ACAGATCGAAAGGCCATGGAAA 60.291 45.455 18.40 0.00 0.00 3.13
195 196 2.098117 CAGATCGAAAGGCCATGGAAAC 59.902 50.000 18.40 4.49 0.00 2.78
213 214 6.785076 TGGAAACAATTAATAGTGGGTCTGA 58.215 36.000 0.00 0.00 37.44 3.27
214 215 7.235079 TGGAAACAATTAATAGTGGGTCTGAA 58.765 34.615 0.00 0.00 37.44 3.02
215 216 7.175990 TGGAAACAATTAATAGTGGGTCTGAAC 59.824 37.037 0.00 0.00 37.44 3.18
216 217 7.175990 GGAAACAATTAATAGTGGGTCTGAACA 59.824 37.037 0.00 0.00 0.00 3.18
217 218 8.472007 AAACAATTAATAGTGGGTCTGAACAA 57.528 30.769 0.00 0.00 0.00 2.83
218 219 8.472007 AACAATTAATAGTGGGTCTGAACAAA 57.528 30.769 0.00 0.00 0.00 2.83
219 220 8.650143 ACAATTAATAGTGGGTCTGAACAAAT 57.350 30.769 0.00 0.00 0.00 2.32
220 221 8.739972 ACAATTAATAGTGGGTCTGAACAAATC 58.260 33.333 0.00 0.00 0.00 2.17
221 222 6.978343 TTAATAGTGGGTCTGAACAAATCG 57.022 37.500 0.00 0.00 0.00 3.34
222 223 4.819105 ATAGTGGGTCTGAACAAATCGA 57.181 40.909 0.00 0.00 0.00 3.59
223 224 3.045601 AGTGGGTCTGAACAAATCGAG 57.954 47.619 0.00 0.00 0.00 4.04
224 225 2.632996 AGTGGGTCTGAACAAATCGAGA 59.367 45.455 0.00 0.00 0.00 4.04
225 226 3.071023 AGTGGGTCTGAACAAATCGAGAA 59.929 43.478 0.00 0.00 0.00 2.87
226 227 3.186613 GTGGGTCTGAACAAATCGAGAAC 59.813 47.826 0.00 0.00 0.00 3.01
227 228 3.181459 TGGGTCTGAACAAATCGAGAACA 60.181 43.478 0.00 0.00 29.61 3.18
228 229 3.813166 GGGTCTGAACAAATCGAGAACAA 59.187 43.478 0.00 0.00 29.61 2.83
229 230 4.083802 GGGTCTGAACAAATCGAGAACAAG 60.084 45.833 0.00 0.00 29.61 3.16
230 231 4.511826 GGTCTGAACAAATCGAGAACAAGT 59.488 41.667 0.00 0.00 0.00 3.16
231 232 5.333416 GGTCTGAACAAATCGAGAACAAGTC 60.333 44.000 0.00 0.00 0.00 3.01
232 233 5.234329 GTCTGAACAAATCGAGAACAAGTCA 59.766 40.000 0.00 0.00 0.00 3.41
233 234 5.463392 TCTGAACAAATCGAGAACAAGTCAG 59.537 40.000 0.00 0.00 0.00 3.51
234 235 4.511454 TGAACAAATCGAGAACAAGTCAGG 59.489 41.667 0.00 0.00 0.00 3.86
235 236 3.403038 ACAAATCGAGAACAAGTCAGGG 58.597 45.455 0.00 0.00 0.00 4.45
236 237 3.071023 ACAAATCGAGAACAAGTCAGGGA 59.929 43.478 0.00 0.00 0.00 4.20
237 238 4.065088 CAAATCGAGAACAAGTCAGGGAA 58.935 43.478 0.00 0.00 0.00 3.97
238 239 3.601443 ATCGAGAACAAGTCAGGGAAG 57.399 47.619 0.00 0.00 0.00 3.46
239 240 1.000955 TCGAGAACAAGTCAGGGAAGC 59.999 52.381 0.00 0.00 0.00 3.86
240 241 1.001406 CGAGAACAAGTCAGGGAAGCT 59.999 52.381 0.00 0.00 0.00 3.74
241 242 2.694213 GAGAACAAGTCAGGGAAGCTC 58.306 52.381 0.00 0.00 0.00 4.09
242 243 2.037772 GAGAACAAGTCAGGGAAGCTCA 59.962 50.000 0.00 0.00 0.00 4.26
243 244 2.641815 AGAACAAGTCAGGGAAGCTCAT 59.358 45.455 0.00 0.00 0.00 2.90
244 245 3.073650 AGAACAAGTCAGGGAAGCTCATT 59.926 43.478 0.00 0.00 0.00 2.57
245 246 3.064900 ACAAGTCAGGGAAGCTCATTC 57.935 47.619 0.00 0.00 37.17 2.67
246 247 2.641815 ACAAGTCAGGGAAGCTCATTCT 59.358 45.455 0.00 0.00 38.07 2.40
247 248 3.073650 ACAAGTCAGGGAAGCTCATTCTT 59.926 43.478 0.00 0.00 38.07 2.52
248 249 4.287067 ACAAGTCAGGGAAGCTCATTCTTA 59.713 41.667 0.00 0.00 38.07 2.10
249 250 4.751767 AGTCAGGGAAGCTCATTCTTAG 57.248 45.455 0.00 0.00 38.07 2.18
250 251 4.357325 AGTCAGGGAAGCTCATTCTTAGA 58.643 43.478 0.00 0.00 38.07 2.10
251 252 4.405358 AGTCAGGGAAGCTCATTCTTAGAG 59.595 45.833 0.00 0.00 38.07 2.43
252 253 3.708631 TCAGGGAAGCTCATTCTTAGAGG 59.291 47.826 0.00 0.00 38.07 3.69
253 254 2.437651 AGGGAAGCTCATTCTTAGAGGC 59.562 50.000 0.00 0.00 38.07 4.70
254 255 2.437651 GGGAAGCTCATTCTTAGAGGCT 59.562 50.000 0.00 0.00 38.07 4.58
255 256 3.494223 GGGAAGCTCATTCTTAGAGGCTC 60.494 52.174 6.34 6.34 38.07 4.70
256 257 3.380142 GAAGCTCATTCTTAGAGGCTCG 58.620 50.000 9.22 0.00 34.86 5.03
257 258 1.686052 AGCTCATTCTTAGAGGCTCGG 59.314 52.381 9.22 3.93 33.72 4.63
258 259 1.410882 GCTCATTCTTAGAGGCTCGGT 59.589 52.381 9.22 0.00 33.72 4.69
259 260 2.623889 GCTCATTCTTAGAGGCTCGGTA 59.376 50.000 9.22 0.00 33.72 4.02
260 261 3.551250 GCTCATTCTTAGAGGCTCGGTAC 60.551 52.174 9.22 0.00 33.72 3.34
261 262 2.957006 TCATTCTTAGAGGCTCGGTACC 59.043 50.000 9.22 0.16 0.00 3.34
262 263 1.772836 TTCTTAGAGGCTCGGTACCC 58.227 55.000 9.22 0.00 0.00 3.69
263 264 0.627451 TCTTAGAGGCTCGGTACCCA 59.373 55.000 9.22 0.00 0.00 4.51
264 265 1.006281 TCTTAGAGGCTCGGTACCCAA 59.994 52.381 9.22 0.00 0.00 4.12
265 266 1.136500 CTTAGAGGCTCGGTACCCAAC 59.864 57.143 9.22 0.00 0.00 3.77
266 267 0.685458 TAGAGGCTCGGTACCCAACC 60.685 60.000 9.22 4.92 45.77 3.77
278 279 4.366684 CCAACCAGGGGTCCAGCC 62.367 72.222 0.00 0.00 33.12 4.85
279 280 3.579302 CAACCAGGGGTCCAGCCA 61.579 66.667 0.00 0.00 39.65 4.75
280 281 2.780924 AACCAGGGGTCCAGCCAA 60.781 61.111 0.00 0.00 39.65 4.52
281 282 2.399607 AACCAGGGGTCCAGCCAAA 61.400 57.895 0.00 0.00 39.65 3.28
282 283 1.955458 AACCAGGGGTCCAGCCAAAA 61.955 55.000 0.00 0.00 39.65 2.44
283 284 1.079073 CCAGGGGTCCAGCCAAAAT 59.921 57.895 0.00 0.00 39.65 1.82
284 285 0.545071 CCAGGGGTCCAGCCAAAATT 60.545 55.000 0.00 0.00 39.65 1.82
285 286 0.609662 CAGGGGTCCAGCCAAAATTG 59.390 55.000 0.00 0.00 39.65 2.32
296 297 2.252535 CCAAAATTGGGTCCCATCCT 57.747 50.000 12.68 0.00 44.70 3.24
297 298 2.110578 CCAAAATTGGGTCCCATCCTC 58.889 52.381 12.68 0.00 44.70 3.71
298 299 2.559478 CCAAAATTGGGTCCCATCCTCA 60.559 50.000 12.68 0.00 44.70 3.86
299 300 3.377573 CAAAATTGGGTCCCATCCTCAT 58.622 45.455 12.68 0.00 31.53 2.90
300 301 3.776417 CAAAATTGGGTCCCATCCTCATT 59.224 43.478 12.68 5.10 31.53 2.57
301 302 3.319031 AATTGGGTCCCATCCTCATTC 57.681 47.619 12.68 0.00 31.53 2.67
302 303 0.926293 TTGGGTCCCATCCTCATTCC 59.074 55.000 12.68 0.00 31.53 3.01
303 304 0.993509 TGGGTCCCATCCTCATTCCC 60.994 60.000 6.47 0.00 0.00 3.97
304 305 0.699231 GGGTCCCATCCTCATTCCCT 60.699 60.000 1.78 0.00 0.00 4.20
305 306 1.416013 GGGTCCCATCCTCATTCCCTA 60.416 57.143 1.78 0.00 0.00 3.53
306 307 2.637165 GGTCCCATCCTCATTCCCTAT 58.363 52.381 0.00 0.00 0.00 2.57
307 308 2.307098 GGTCCCATCCTCATTCCCTATG 59.693 54.545 0.00 0.00 35.45 2.23
308 309 3.251484 GTCCCATCCTCATTCCCTATGA 58.749 50.000 0.00 0.00 40.96 2.15
309 310 3.652869 GTCCCATCCTCATTCCCTATGAA 59.347 47.826 0.00 0.00 42.56 2.57
310 311 3.912528 TCCCATCCTCATTCCCTATGAAG 59.087 47.826 0.00 0.00 42.56 3.02
311 312 3.912528 CCCATCCTCATTCCCTATGAAGA 59.087 47.826 0.00 0.00 42.56 2.87
312 313 4.352001 CCCATCCTCATTCCCTATGAAGAA 59.648 45.833 0.00 0.00 42.56 2.52
313 314 5.514484 CCCATCCTCATTCCCTATGAAGAAG 60.514 48.000 0.00 0.00 42.56 2.85
314 315 5.309020 CCATCCTCATTCCCTATGAAGAAGA 59.691 44.000 0.00 0.00 42.56 2.87
315 316 6.183361 CCATCCTCATTCCCTATGAAGAAGAA 60.183 42.308 0.00 0.00 42.56 2.52
316 317 6.891306 TCCTCATTCCCTATGAAGAAGAAA 57.109 37.500 0.00 0.00 42.56 2.52
317 318 7.457380 TCCTCATTCCCTATGAAGAAGAAAT 57.543 36.000 0.00 0.00 42.56 2.17
318 319 7.876371 TCCTCATTCCCTATGAAGAAGAAATT 58.124 34.615 0.00 0.00 42.56 1.82
319 320 8.339247 TCCTCATTCCCTATGAAGAAGAAATTT 58.661 33.333 0.00 0.00 42.56 1.82
320 321 8.975295 CCTCATTCCCTATGAAGAAGAAATTTT 58.025 33.333 0.00 0.00 42.56 1.82
339 340 4.360951 TTTTTACACGGATGTCCTCCTT 57.639 40.909 0.00 0.00 42.47 3.36
340 341 3.328382 TTTACACGGATGTCCTCCTTG 57.672 47.619 0.00 0.00 46.33 3.61
341 342 2.225382 TACACGGATGTCCTCCTTGA 57.775 50.000 7.52 0.00 44.25 3.02
342 343 1.573108 ACACGGATGTCCTCCTTGAT 58.427 50.000 7.52 0.00 44.25 2.57
343 344 1.482593 ACACGGATGTCCTCCTTGATC 59.517 52.381 7.52 0.00 44.25 2.92
344 345 1.123928 ACGGATGTCCTCCTTGATCC 58.876 55.000 0.00 0.00 42.47 3.36
345 346 1.343478 ACGGATGTCCTCCTTGATCCT 60.343 52.381 0.00 0.00 42.47 3.24
346 347 1.765314 CGGATGTCCTCCTTGATCCTT 59.235 52.381 0.00 0.00 42.47 3.36
347 348 2.171448 CGGATGTCCTCCTTGATCCTTT 59.829 50.000 0.00 0.00 42.47 3.11
348 349 3.549794 GGATGTCCTCCTTGATCCTTTG 58.450 50.000 0.00 0.00 41.29 2.77
349 350 3.549794 GATGTCCTCCTTGATCCTTTGG 58.450 50.000 0.00 0.00 0.00 3.28
350 351 2.631384 TGTCCTCCTTGATCCTTTGGA 58.369 47.619 0.00 0.00 35.55 3.53
351 352 3.192944 TGTCCTCCTTGATCCTTTGGAT 58.807 45.455 0.00 0.00 46.28 3.41
352 353 3.054139 TGTCCTCCTTGATCCTTTGGATG 60.054 47.826 3.57 0.00 43.27 3.51
353 354 3.054065 GTCCTCCTTGATCCTTTGGATGT 60.054 47.826 3.57 0.00 43.27 3.06
354 355 3.054139 TCCTCCTTGATCCTTTGGATGTG 60.054 47.826 3.57 0.00 43.27 3.21
355 356 3.308688 CCTCCTTGATCCTTTGGATGTGT 60.309 47.826 3.57 0.00 43.27 3.72
356 357 3.944015 CTCCTTGATCCTTTGGATGTGTC 59.056 47.826 3.57 0.00 43.27 3.67
357 358 2.679837 CCTTGATCCTTTGGATGTGTCG 59.320 50.000 3.57 0.00 43.27 4.35
358 359 1.737838 TGATCCTTTGGATGTGTCGC 58.262 50.000 3.57 0.00 43.27 5.19
359 360 1.017387 GATCCTTTGGATGTGTCGCC 58.983 55.000 3.57 0.00 43.27 5.54
360 361 0.327924 ATCCTTTGGATGTGTCGCCA 59.672 50.000 0.00 0.00 41.43 5.69
361 362 0.321564 TCCTTTGGATGTGTCGCCAG 60.322 55.000 0.00 0.00 35.23 4.85
362 363 0.321564 CCTTTGGATGTGTCGCCAGA 60.322 55.000 0.00 0.00 35.23 3.86
363 364 1.522668 CTTTGGATGTGTCGCCAGAA 58.477 50.000 0.00 0.00 35.23 3.02
364 365 1.197721 CTTTGGATGTGTCGCCAGAAC 59.802 52.381 0.00 0.00 35.23 3.01
365 366 0.396435 TTGGATGTGTCGCCAGAACT 59.604 50.000 0.00 0.00 35.23 3.01
366 367 0.320683 TGGATGTGTCGCCAGAACTG 60.321 55.000 0.00 0.00 0.00 3.16
367 368 0.320771 GGATGTGTCGCCAGAACTGT 60.321 55.000 1.18 0.00 0.00 3.55
368 369 0.792640 GATGTGTCGCCAGAACTGTG 59.207 55.000 1.18 0.00 0.00 3.66
369 370 0.392706 ATGTGTCGCCAGAACTGTGA 59.607 50.000 1.18 0.00 0.00 3.58
370 371 0.392706 TGTGTCGCCAGAACTGTGAT 59.607 50.000 1.18 0.00 0.00 3.06
371 372 1.071605 GTGTCGCCAGAACTGTGATC 58.928 55.000 1.18 0.00 0.00 2.92
372 373 0.037326 TGTCGCCAGAACTGTGATCC 60.037 55.000 1.18 0.00 0.00 3.36
373 374 0.247736 GTCGCCAGAACTGTGATCCT 59.752 55.000 1.18 0.00 0.00 3.24
374 375 0.532573 TCGCCAGAACTGTGATCCTC 59.467 55.000 1.18 0.00 0.00 3.71
375 376 0.460987 CGCCAGAACTGTGATCCTCC 60.461 60.000 1.18 0.00 0.00 4.30
376 377 0.107459 GCCAGAACTGTGATCCTCCC 60.107 60.000 1.18 0.00 0.00 4.30
377 378 0.176680 CCAGAACTGTGATCCTCCCG 59.823 60.000 1.18 0.00 0.00 5.14
378 379 1.186200 CAGAACTGTGATCCTCCCGA 58.814 55.000 0.00 0.00 0.00 5.14
379 380 1.135915 CAGAACTGTGATCCTCCCGAG 59.864 57.143 0.00 0.00 0.00 4.63
380 381 0.179097 GAACTGTGATCCTCCCGAGC 60.179 60.000 0.00 0.00 0.00 5.03
381 382 1.949847 AACTGTGATCCTCCCGAGCG 61.950 60.000 0.00 0.00 0.00 5.03
382 383 2.044352 TGTGATCCTCCCGAGCGA 60.044 61.111 0.00 0.00 0.00 4.93
383 384 2.069465 CTGTGATCCTCCCGAGCGAG 62.069 65.000 0.00 0.00 0.00 5.03
384 385 1.824329 GTGATCCTCCCGAGCGAGA 60.824 63.158 0.00 0.00 30.97 4.04
385 386 1.076995 TGATCCTCCCGAGCGAGAA 60.077 57.895 0.00 0.00 30.97 2.87
386 387 1.360911 GATCCTCCCGAGCGAGAAC 59.639 63.158 0.00 0.00 30.97 3.01
387 388 1.379977 ATCCTCCCGAGCGAGAACA 60.380 57.895 0.00 0.00 30.97 3.18
388 389 0.757188 ATCCTCCCGAGCGAGAACAT 60.757 55.000 0.00 0.00 30.97 2.71
389 390 0.106868 TCCTCCCGAGCGAGAACATA 60.107 55.000 0.00 0.00 30.97 2.29
390 391 0.030908 CCTCCCGAGCGAGAACATAC 59.969 60.000 0.00 0.00 30.97 2.39
391 392 0.030908 CTCCCGAGCGAGAACATACC 59.969 60.000 0.00 0.00 30.97 2.73
392 393 0.681887 TCCCGAGCGAGAACATACCA 60.682 55.000 0.00 0.00 0.00 3.25
393 394 0.249073 CCCGAGCGAGAACATACCAG 60.249 60.000 0.00 0.00 0.00 4.00
394 395 0.738975 CCGAGCGAGAACATACCAGA 59.261 55.000 0.00 0.00 0.00 3.86
395 396 1.134367 CCGAGCGAGAACATACCAGAA 59.866 52.381 0.00 0.00 0.00 3.02
396 397 2.455032 CGAGCGAGAACATACCAGAAG 58.545 52.381 0.00 0.00 0.00 2.85
397 398 2.097629 CGAGCGAGAACATACCAGAAGA 59.902 50.000 0.00 0.00 0.00 2.87
398 399 3.701241 GAGCGAGAACATACCAGAAGAG 58.299 50.000 0.00 0.00 0.00 2.85
399 400 2.428890 AGCGAGAACATACCAGAAGAGG 59.571 50.000 0.00 0.00 0.00 3.69
400 401 2.815478 CGAGAACATACCAGAAGAGGC 58.185 52.381 0.00 0.00 0.00 4.70
401 402 2.428890 CGAGAACATACCAGAAGAGGCT 59.571 50.000 0.00 0.00 0.00 4.58
402 403 3.490078 CGAGAACATACCAGAAGAGGCTC 60.490 52.174 6.34 6.34 0.00 4.70
403 404 3.445008 AGAACATACCAGAAGAGGCTCA 58.555 45.455 18.26 0.00 0.00 4.26
404 405 3.196685 AGAACATACCAGAAGAGGCTCAC 59.803 47.826 18.26 10.31 0.00 3.51
490 492 0.976073 TTTGGTTGCCCGGTTTTCCA 60.976 50.000 0.00 0.71 40.70 3.53
504 506 1.360185 TTTCCAATTGGGCCTGCATT 58.640 45.000 24.29 0.00 36.21 3.56
556 558 1.447838 GCTGGAAACGCTCGGATCA 60.448 57.895 0.00 0.00 0.00 2.92
699 712 1.674057 CCCCTTTCACTCGCTCACT 59.326 57.895 0.00 0.00 0.00 3.41
868 896 0.618680 TAGTCTGTGCCATGGCTCCT 60.619 55.000 35.53 24.84 42.51 3.69
888 916 0.459934 CCTACGTCGTCCTCGTCTCT 60.460 60.000 0.00 0.00 41.72 3.10
967 996 5.615925 AAGCTAGGTGTAGGATCGATTTT 57.384 39.130 0.00 0.00 0.00 1.82
1039 1068 1.881072 CGATAATCCAGGCAGCAGCAT 60.881 52.381 2.65 0.00 44.61 3.79
1203 1232 0.393944 ACGTCGAGGCTCTGTGGATA 60.394 55.000 13.50 0.00 0.00 2.59
1245 1274 2.038814 TTGCCAGGCTTGTCGAGACA 62.039 55.000 14.15 1.24 35.01 3.41
1291 1320 2.472695 TAGCATCAACACCAGTGTCC 57.527 50.000 3.49 0.00 44.13 4.02
1352 1381 2.409948 CAGAGGTTCTGGGTCATTCC 57.590 55.000 0.00 0.00 40.71 3.01
1374 1403 4.503910 CCAACACGTTCAGGAGATCAATA 58.496 43.478 0.00 0.00 0.00 1.90
1423 1452 0.107654 GCTTTATGCTGTCGGGGAGT 60.108 55.000 0.00 0.00 38.95 3.85
1426 1455 2.107950 TTATGCTGTCGGGGAGTTTG 57.892 50.000 0.00 0.00 0.00 2.93
1577 1609 4.400529 TCAAGTTGAGCACTAACACAGA 57.599 40.909 0.08 0.00 32.94 3.41
1610 1642 4.080413 CCATTTTTAGGATTGCATTGGGGT 60.080 41.667 0.00 0.00 0.00 4.95
1626 1658 5.881923 TTGGGGTAATAGATGGTACTCAC 57.118 43.478 0.00 0.00 0.00 3.51
1688 1720 1.073284 GGGGAGGAAGCACTACACAAA 59.927 52.381 0.00 0.00 0.00 2.83
1692 1724 3.211045 GAGGAAGCACTACACAAACCAA 58.789 45.455 0.00 0.00 0.00 3.67
1782 1814 3.303593 CGCATGATGCTAACATTCTCACC 60.304 47.826 16.17 0.00 42.25 4.02
2177 2209 1.748879 TTGTTAGCTCCGGCCATGC 60.749 57.895 2.24 3.13 39.73 4.06
2271 2303 1.200948 GGTCAGTGCAGGATTTGAAGC 59.799 52.381 0.00 0.00 0.00 3.86
2327 2398 0.322636 AGCAGCTGAAGCAGAAGCAT 60.323 50.000 20.43 0.00 45.49 3.79
2497 2592 3.931468 CAGATTCTGTGTGGTAAGCTCAG 59.069 47.826 5.46 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.343941 TTATGCCAGTCACCTACCAAC 57.656 47.619 0.00 0.00 0.00 3.77
1 2 3.872240 GCTTTATGCCAGTCACCTACCAA 60.872 47.826 0.00 0.00 35.15 3.67
2 3 2.355716 GCTTTATGCCAGTCACCTACCA 60.356 50.000 0.00 0.00 35.15 3.25
5 6 3.544684 CATGCTTTATGCCAGTCACCTA 58.455 45.455 0.00 0.00 42.00 3.08
6 7 2.372264 CATGCTTTATGCCAGTCACCT 58.628 47.619 0.00 0.00 42.00 4.00
7 8 1.406539 CCATGCTTTATGCCAGTCACC 59.593 52.381 0.00 0.00 42.00 4.02
8 9 2.094675 ACCATGCTTTATGCCAGTCAC 58.905 47.619 0.00 0.00 42.00 3.67
9 10 2.512692 ACCATGCTTTATGCCAGTCA 57.487 45.000 0.00 0.00 42.00 3.41
10 11 3.885297 ACATACCATGCTTTATGCCAGTC 59.115 43.478 6.97 0.00 42.00 3.51
11 12 3.885297 GACATACCATGCTTTATGCCAGT 59.115 43.478 6.97 0.00 42.00 4.00
12 13 3.058708 CGACATACCATGCTTTATGCCAG 60.059 47.826 6.97 0.00 42.00 4.85
13 14 2.877786 CGACATACCATGCTTTATGCCA 59.122 45.455 6.97 0.00 42.00 4.92
14 15 2.878406 ACGACATACCATGCTTTATGCC 59.122 45.455 0.00 0.00 42.00 4.40
15 16 3.849645 GCACGACATACCATGCTTTATGC 60.850 47.826 0.00 0.00 43.25 3.14
16 17 3.561310 AGCACGACATACCATGCTTTATG 59.439 43.478 0.00 5.93 46.06 1.90
17 18 3.808728 AGCACGACATACCATGCTTTAT 58.191 40.909 0.00 0.00 46.06 1.40
18 19 3.260475 AGCACGACATACCATGCTTTA 57.740 42.857 0.00 0.00 46.06 1.85
19 20 2.113860 AGCACGACATACCATGCTTT 57.886 45.000 0.00 0.00 46.06 3.51
20 21 3.861341 AGCACGACATACCATGCTT 57.139 47.368 0.00 0.00 46.06 3.91
22 23 0.652592 GTGAGCACGACATACCATGC 59.347 55.000 0.00 0.00 38.39 4.06
23 24 1.290203 GGTGAGCACGACATACCATG 58.710 55.000 0.00 0.00 0.00 3.66
24 25 0.179111 CGGTGAGCACGACATACCAT 60.179 55.000 0.00 0.00 0.00 3.55
25 26 1.214325 CGGTGAGCACGACATACCA 59.786 57.895 0.00 0.00 0.00 3.25
26 27 0.108992 TTCGGTGAGCACGACATACC 60.109 55.000 0.00 0.00 40.45 2.73
27 28 1.705256 TTTCGGTGAGCACGACATAC 58.295 50.000 0.00 0.00 40.45 2.39
28 29 2.063266 GTTTTCGGTGAGCACGACATA 58.937 47.619 0.00 0.00 40.45 2.29
29 30 0.865769 GTTTTCGGTGAGCACGACAT 59.134 50.000 0.00 0.00 40.45 3.06
30 31 0.179094 AGTTTTCGGTGAGCACGACA 60.179 50.000 0.00 0.00 40.45 4.35
31 32 0.507358 GAGTTTTCGGTGAGCACGAC 59.493 55.000 0.00 0.00 40.45 4.34
32 33 0.599204 GGAGTTTTCGGTGAGCACGA 60.599 55.000 0.00 0.00 38.78 4.35
33 34 1.860078 GGAGTTTTCGGTGAGCACG 59.140 57.895 0.00 0.00 0.00 5.34
34 35 1.860078 CGGAGTTTTCGGTGAGCAC 59.140 57.895 0.00 0.00 0.00 4.40
35 36 1.959226 GCGGAGTTTTCGGTGAGCA 60.959 57.895 0.00 0.00 0.00 4.26
36 37 1.668151 AGCGGAGTTTTCGGTGAGC 60.668 57.895 0.00 0.00 36.96 4.26
37 38 4.675404 AGCGGAGTTTTCGGTGAG 57.325 55.556 0.00 0.00 36.96 3.51
40 41 1.663702 CGACAGCGGAGTTTTCGGT 60.664 57.895 0.00 0.00 38.98 4.69
41 42 3.156334 CGACAGCGGAGTTTTCGG 58.844 61.111 0.00 0.00 0.00 4.30
51 52 0.028770 GACAGATCTCTCCGACAGCG 59.971 60.000 0.00 0.00 37.24 5.18
52 53 1.098869 TGACAGATCTCTCCGACAGC 58.901 55.000 0.00 0.00 0.00 4.40
53 54 3.013219 TCTTGACAGATCTCTCCGACAG 58.987 50.000 0.00 0.00 0.00 3.51
54 55 2.750166 GTCTTGACAGATCTCTCCGACA 59.250 50.000 10.56 0.00 0.00 4.35
55 56 2.750166 TGTCTTGACAGATCTCTCCGAC 59.250 50.000 0.00 1.67 0.00 4.79
56 57 2.750166 GTGTCTTGACAGATCTCTCCGA 59.250 50.000 3.45 0.00 0.00 4.55
57 58 2.477021 CGTGTCTTGACAGATCTCTCCG 60.477 54.545 3.45 0.00 0.00 4.63
58 59 2.159310 CCGTGTCTTGACAGATCTCTCC 60.159 54.545 3.45 0.00 0.00 3.71
59 60 2.490115 ACCGTGTCTTGACAGATCTCTC 59.510 50.000 3.45 0.00 0.00 3.20
60 61 2.230025 CACCGTGTCTTGACAGATCTCT 59.770 50.000 3.45 0.00 0.00 3.10
61 62 2.029828 ACACCGTGTCTTGACAGATCTC 60.030 50.000 3.45 0.00 0.00 2.75
62 63 1.964223 ACACCGTGTCTTGACAGATCT 59.036 47.619 3.45 0.00 0.00 2.75
63 64 2.440539 ACACCGTGTCTTGACAGATC 57.559 50.000 3.45 0.00 0.00 2.75
64 65 2.755650 GAACACCGTGTCTTGACAGAT 58.244 47.619 4.23 0.00 0.00 2.90
65 66 1.535226 CGAACACCGTGTCTTGACAGA 60.535 52.381 4.23 0.00 0.00 3.41
66 67 0.852777 CGAACACCGTGTCTTGACAG 59.147 55.000 4.23 0.00 0.00 3.51
67 68 0.528901 CCGAACACCGTGTCTTGACA 60.529 55.000 4.23 0.00 36.31 3.58
68 69 0.249155 TCCGAACACCGTGTCTTGAC 60.249 55.000 4.23 0.00 36.31 3.18
69 70 0.677288 ATCCGAACACCGTGTCTTGA 59.323 50.000 4.23 2.27 36.31 3.02
70 71 2.259618 CTATCCGAACACCGTGTCTTG 58.740 52.381 4.23 0.00 36.31 3.02
71 72 1.891150 ACTATCCGAACACCGTGTCTT 59.109 47.619 4.23 0.00 36.31 3.01
72 73 1.471684 GACTATCCGAACACCGTGTCT 59.528 52.381 4.23 0.00 36.31 3.41
73 74 1.468736 GGACTATCCGAACACCGTGTC 60.469 57.143 4.23 0.00 36.31 3.67
74 75 0.529378 GGACTATCCGAACACCGTGT 59.471 55.000 0.00 0.00 36.31 4.49
75 76 0.528924 TGGACTATCCGAACACCGTG 59.471 55.000 0.00 0.00 40.17 4.94
76 77 0.815734 CTGGACTATCCGAACACCGT 59.184 55.000 0.00 0.00 40.17 4.83
77 78 0.815734 ACTGGACTATCCGAACACCG 59.184 55.000 0.00 0.00 40.17 4.94
78 79 2.223758 GCTACTGGACTATCCGAACACC 60.224 54.545 0.00 0.00 40.17 4.16
79 80 2.426024 TGCTACTGGACTATCCGAACAC 59.574 50.000 0.00 0.00 40.17 3.32
80 81 2.426024 GTGCTACTGGACTATCCGAACA 59.574 50.000 0.00 0.00 40.17 3.18
81 82 2.223758 GGTGCTACTGGACTATCCGAAC 60.224 54.545 0.00 0.00 40.17 3.95
82 83 2.029623 GGTGCTACTGGACTATCCGAA 58.970 52.381 0.00 0.00 40.17 4.30
83 84 1.064240 TGGTGCTACTGGACTATCCGA 60.064 52.381 0.00 0.00 40.17 4.55
84 85 1.338337 CTGGTGCTACTGGACTATCCG 59.662 57.143 0.00 0.00 40.17 4.18
85 86 2.101582 CACTGGTGCTACTGGACTATCC 59.898 54.545 0.00 0.00 36.96 2.59
86 87 2.101582 CCACTGGTGCTACTGGACTATC 59.898 54.545 0.00 0.00 34.78 2.08
87 88 2.111384 CCACTGGTGCTACTGGACTAT 58.889 52.381 0.00 0.00 34.78 2.12
88 89 1.203137 ACCACTGGTGCTACTGGACTA 60.203 52.381 0.00 0.00 32.98 2.59
89 90 0.471971 ACCACTGGTGCTACTGGACT 60.472 55.000 0.00 0.00 32.98 3.85
90 91 1.263356 TACCACTGGTGCTACTGGAC 58.737 55.000 11.32 0.00 36.19 4.02
91 92 1.899814 CTTACCACTGGTGCTACTGGA 59.100 52.381 11.32 0.00 36.19 3.86
92 93 1.066143 CCTTACCACTGGTGCTACTGG 60.066 57.143 11.32 0.64 36.19 4.00
93 94 1.676014 GCCTTACCACTGGTGCTACTG 60.676 57.143 11.32 0.00 36.19 2.74
94 95 0.613777 GCCTTACCACTGGTGCTACT 59.386 55.000 11.32 0.00 36.19 2.57
95 96 0.323629 TGCCTTACCACTGGTGCTAC 59.676 55.000 11.32 0.00 36.19 3.58
96 97 1.060729 TTGCCTTACCACTGGTGCTA 58.939 50.000 11.32 0.18 36.19 3.49
97 98 0.537371 GTTGCCTTACCACTGGTGCT 60.537 55.000 11.32 0.00 36.19 4.40
98 99 1.524008 GGTTGCCTTACCACTGGTGC 61.524 60.000 11.32 6.52 36.19 5.01
99 100 0.110486 AGGTTGCCTTACCACTGGTG 59.890 55.000 11.32 0.00 40.82 4.17
100 101 0.110486 CAGGTTGCCTTACCACTGGT 59.890 55.000 5.88 5.88 40.82 4.00
101 102 0.110486 ACAGGTTGCCTTACCACTGG 59.890 55.000 0.00 0.00 40.82 4.00
102 103 2.038557 ACTACAGGTTGCCTTACCACTG 59.961 50.000 0.00 0.00 40.82 3.66
103 104 2.038557 CACTACAGGTTGCCTTACCACT 59.961 50.000 0.00 0.00 40.82 4.00
104 105 2.224450 ACACTACAGGTTGCCTTACCAC 60.224 50.000 0.00 0.00 40.82 4.16
105 106 2.038033 GACACTACAGGTTGCCTTACCA 59.962 50.000 0.00 0.00 40.82 3.25
106 107 2.038033 TGACACTACAGGTTGCCTTACC 59.962 50.000 0.00 0.00 38.53 2.85
107 108 3.064931 GTGACACTACAGGTTGCCTTAC 58.935 50.000 0.00 0.00 0.00 2.34
108 109 2.969950 AGTGACACTACAGGTTGCCTTA 59.030 45.455 6.24 0.00 0.00 2.69
109 110 1.768870 AGTGACACTACAGGTTGCCTT 59.231 47.619 6.24 0.00 0.00 4.35
110 111 1.344763 GAGTGACACTACAGGTTGCCT 59.655 52.381 8.41 0.00 0.00 4.75
111 112 1.344763 AGAGTGACACTACAGGTTGCC 59.655 52.381 8.41 0.00 0.00 4.52
112 113 2.297597 AGAGAGTGACACTACAGGTTGC 59.702 50.000 8.41 0.00 0.00 4.17
113 114 3.858877 GCAGAGAGTGACACTACAGGTTG 60.859 52.174 8.41 3.29 0.00 3.77
114 115 2.297597 GCAGAGAGTGACACTACAGGTT 59.702 50.000 8.41 0.00 0.00 3.50
115 116 1.889829 GCAGAGAGTGACACTACAGGT 59.110 52.381 8.41 0.00 0.00 4.00
116 117 2.166829 AGCAGAGAGTGACACTACAGG 58.833 52.381 8.41 0.38 0.00 4.00
117 118 3.573598 CAAGCAGAGAGTGACACTACAG 58.426 50.000 8.41 4.40 0.00 2.74
118 119 2.288457 GCAAGCAGAGAGTGACACTACA 60.288 50.000 8.41 0.00 0.00 2.74
119 120 2.333014 GCAAGCAGAGAGTGACACTAC 58.667 52.381 8.41 6.14 0.00 2.73
120 121 1.273606 GGCAAGCAGAGAGTGACACTA 59.726 52.381 8.41 0.00 0.00 2.74
121 122 0.034616 GGCAAGCAGAGAGTGACACT 59.965 55.000 8.12 8.12 0.00 3.55
122 123 0.952984 GGGCAAGCAGAGAGTGACAC 60.953 60.000 0.00 0.00 0.00 3.67
123 124 1.372683 GGGCAAGCAGAGAGTGACA 59.627 57.895 0.00 0.00 0.00 3.58
124 125 0.250467 TTGGGCAAGCAGAGAGTGAC 60.250 55.000 0.00 0.00 0.00 3.67
125 126 0.473755 TTTGGGCAAGCAGAGAGTGA 59.526 50.000 0.00 0.00 0.00 3.41
126 127 1.268899 CTTTTGGGCAAGCAGAGAGTG 59.731 52.381 0.00 0.00 0.00 3.51
127 128 1.133668 ACTTTTGGGCAAGCAGAGAGT 60.134 47.619 0.00 0.00 0.00 3.24
128 129 1.613836 ACTTTTGGGCAAGCAGAGAG 58.386 50.000 0.00 0.00 0.00 3.20
129 130 2.504367 GTACTTTTGGGCAAGCAGAGA 58.496 47.619 0.00 0.00 0.00 3.10
130 131 1.197721 CGTACTTTTGGGCAAGCAGAG 59.802 52.381 0.00 0.00 0.00 3.35
131 132 1.202710 TCGTACTTTTGGGCAAGCAGA 60.203 47.619 0.00 0.00 0.00 4.26
132 133 1.069227 GTCGTACTTTTGGGCAAGCAG 60.069 52.381 0.00 0.00 0.00 4.24
133 134 0.948678 GTCGTACTTTTGGGCAAGCA 59.051 50.000 0.00 0.00 0.00 3.91
134 135 0.110373 CGTCGTACTTTTGGGCAAGC 60.110 55.000 0.00 0.00 0.00 4.01
135 136 1.504359 TCGTCGTACTTTTGGGCAAG 58.496 50.000 0.00 0.00 0.00 4.01
136 137 1.950828 TTCGTCGTACTTTTGGGCAA 58.049 45.000 0.00 0.00 0.00 4.52
137 138 1.598601 GTTTCGTCGTACTTTTGGGCA 59.401 47.619 0.00 0.00 0.00 5.36
138 139 1.869132 AGTTTCGTCGTACTTTTGGGC 59.131 47.619 0.00 0.00 0.00 5.36
139 140 3.125316 TCAGTTTCGTCGTACTTTTGGG 58.875 45.455 0.00 0.00 0.00 4.12
140 141 4.782252 TTCAGTTTCGTCGTACTTTTGG 57.218 40.909 0.00 0.00 0.00 3.28
141 142 7.006210 GCAATATTCAGTTTCGTCGTACTTTTG 59.994 37.037 0.00 0.00 0.00 2.44
142 143 7.013529 GCAATATTCAGTTTCGTCGTACTTTT 58.986 34.615 0.00 0.00 0.00 2.27
143 144 6.146510 TGCAATATTCAGTTTCGTCGTACTTT 59.853 34.615 0.00 0.00 0.00 2.66
144 145 5.636121 TGCAATATTCAGTTTCGTCGTACTT 59.364 36.000 0.00 0.00 0.00 2.24
145 146 5.061808 GTGCAATATTCAGTTTCGTCGTACT 59.938 40.000 0.00 0.00 0.00 2.73
146 147 5.061808 AGTGCAATATTCAGTTTCGTCGTAC 59.938 40.000 0.00 0.00 0.00 3.67
147 148 5.061684 CAGTGCAATATTCAGTTTCGTCGTA 59.938 40.000 0.00 0.00 0.00 3.43
148 149 3.994392 AGTGCAATATTCAGTTTCGTCGT 59.006 39.130 0.00 0.00 0.00 4.34
149 150 4.143115 ACAGTGCAATATTCAGTTTCGTCG 60.143 41.667 0.00 0.00 0.00 5.12
150 151 5.283060 ACAGTGCAATATTCAGTTTCGTC 57.717 39.130 0.00 0.00 0.00 4.20
151 152 5.699001 TGTACAGTGCAATATTCAGTTTCGT 59.301 36.000 0.00 0.00 0.00 3.85
152 153 6.090763 TCTGTACAGTGCAATATTCAGTTTCG 59.909 38.462 21.99 0.00 0.00 3.46
153 154 7.364522 TCTGTACAGTGCAATATTCAGTTTC 57.635 36.000 21.99 0.00 0.00 2.78
154 155 7.201556 CGATCTGTACAGTGCAATATTCAGTTT 60.202 37.037 21.99 0.00 0.00 2.66
155 156 6.256539 CGATCTGTACAGTGCAATATTCAGTT 59.743 38.462 21.99 0.00 0.00 3.16
156 157 5.750547 CGATCTGTACAGTGCAATATTCAGT 59.249 40.000 21.99 0.00 0.00 3.41
157 158 5.979517 TCGATCTGTACAGTGCAATATTCAG 59.020 40.000 21.99 0.00 0.00 3.02
158 159 5.901552 TCGATCTGTACAGTGCAATATTCA 58.098 37.500 21.99 0.00 0.00 2.57
159 160 6.828502 TTCGATCTGTACAGTGCAATATTC 57.171 37.500 21.99 7.11 0.00 1.75
160 161 6.258727 CCTTTCGATCTGTACAGTGCAATATT 59.741 38.462 21.99 0.00 0.00 1.28
161 162 5.755375 CCTTTCGATCTGTACAGTGCAATAT 59.245 40.000 21.99 7.45 0.00 1.28
162 163 5.109210 CCTTTCGATCTGTACAGTGCAATA 58.891 41.667 21.99 2.35 0.00 1.90
163 164 3.935203 CCTTTCGATCTGTACAGTGCAAT 59.065 43.478 21.99 8.57 0.00 3.56
164 165 3.325870 CCTTTCGATCTGTACAGTGCAA 58.674 45.455 21.99 9.43 0.00 4.08
165 166 2.930887 GCCTTTCGATCTGTACAGTGCA 60.931 50.000 21.99 3.90 0.00 4.57
166 167 1.661112 GCCTTTCGATCTGTACAGTGC 59.339 52.381 21.99 13.85 0.00 4.40
167 168 2.271800 GGCCTTTCGATCTGTACAGTG 58.728 52.381 21.99 13.26 0.00 3.66
168 169 1.899814 TGGCCTTTCGATCTGTACAGT 59.100 47.619 21.99 9.95 0.00 3.55
169 170 2.672961 TGGCCTTTCGATCTGTACAG 57.327 50.000 17.17 17.17 0.00 2.74
170 171 2.419990 CCATGGCCTTTCGATCTGTACA 60.420 50.000 3.32 0.00 0.00 2.90
171 172 2.158957 TCCATGGCCTTTCGATCTGTAC 60.159 50.000 6.96 0.00 0.00 2.90
172 173 2.115427 TCCATGGCCTTTCGATCTGTA 58.885 47.619 6.96 0.00 0.00 2.74
173 174 0.911769 TCCATGGCCTTTCGATCTGT 59.088 50.000 6.96 0.00 0.00 3.41
174 175 2.042686 TTCCATGGCCTTTCGATCTG 57.957 50.000 6.96 0.00 0.00 2.90
175 176 2.290896 TGTTTCCATGGCCTTTCGATCT 60.291 45.455 6.96 0.00 0.00 2.75
176 177 2.091541 TGTTTCCATGGCCTTTCGATC 58.908 47.619 6.96 0.00 0.00 3.69
177 178 2.214376 TGTTTCCATGGCCTTTCGAT 57.786 45.000 6.96 0.00 0.00 3.59
178 179 1.988293 TTGTTTCCATGGCCTTTCGA 58.012 45.000 6.96 0.00 0.00 3.71
179 180 3.317603 AATTGTTTCCATGGCCTTTCG 57.682 42.857 6.96 0.00 0.00 3.46
180 181 7.492344 CACTATTAATTGTTTCCATGGCCTTTC 59.508 37.037 6.96 0.00 0.00 2.62
181 182 7.330262 CACTATTAATTGTTTCCATGGCCTTT 58.670 34.615 6.96 0.00 0.00 3.11
182 183 6.127083 CCACTATTAATTGTTTCCATGGCCTT 60.127 38.462 6.96 0.00 0.00 4.35
183 184 5.363580 CCACTATTAATTGTTTCCATGGCCT 59.636 40.000 6.96 0.00 0.00 5.19
184 185 5.453198 CCCACTATTAATTGTTTCCATGGCC 60.453 44.000 6.96 0.00 0.00 5.36
185 186 5.128663 ACCCACTATTAATTGTTTCCATGGC 59.871 40.000 6.96 0.00 0.00 4.40
186 187 6.607198 AGACCCACTATTAATTGTTTCCATGG 59.393 38.462 4.97 4.97 0.00 3.66
187 188 7.339212 TCAGACCCACTATTAATTGTTTCCATG 59.661 37.037 0.00 0.00 0.00 3.66
188 189 7.410174 TCAGACCCACTATTAATTGTTTCCAT 58.590 34.615 0.00 0.00 0.00 3.41
189 190 6.785076 TCAGACCCACTATTAATTGTTTCCA 58.215 36.000 0.00 0.00 0.00 3.53
190 191 7.175990 TGTTCAGACCCACTATTAATTGTTTCC 59.824 37.037 0.00 0.00 0.00 3.13
191 192 8.106247 TGTTCAGACCCACTATTAATTGTTTC 57.894 34.615 0.00 0.00 0.00 2.78
192 193 8.472007 TTGTTCAGACCCACTATTAATTGTTT 57.528 30.769 0.00 0.00 0.00 2.83
193 194 8.472007 TTTGTTCAGACCCACTATTAATTGTT 57.528 30.769 0.00 0.00 0.00 2.83
194 195 8.650143 ATTTGTTCAGACCCACTATTAATTGT 57.350 30.769 0.00 0.00 0.00 2.71
195 196 7.910162 CGATTTGTTCAGACCCACTATTAATTG 59.090 37.037 0.00 0.00 0.00 2.32
196 197 7.827236 TCGATTTGTTCAGACCCACTATTAATT 59.173 33.333 0.00 0.00 0.00 1.40
197 198 7.335627 TCGATTTGTTCAGACCCACTATTAAT 58.664 34.615 0.00 0.00 0.00 1.40
198 199 6.703319 TCGATTTGTTCAGACCCACTATTAA 58.297 36.000 0.00 0.00 0.00 1.40
199 200 6.153851 TCTCGATTTGTTCAGACCCACTATTA 59.846 38.462 0.00 0.00 0.00 0.98
200 201 5.046591 TCTCGATTTGTTCAGACCCACTATT 60.047 40.000 0.00 0.00 0.00 1.73
201 202 4.466370 TCTCGATTTGTTCAGACCCACTAT 59.534 41.667 0.00 0.00 0.00 2.12
202 203 3.830178 TCTCGATTTGTTCAGACCCACTA 59.170 43.478 0.00 0.00 0.00 2.74
203 204 2.632996 TCTCGATTTGTTCAGACCCACT 59.367 45.455 0.00 0.00 0.00 4.00
204 205 3.040147 TCTCGATTTGTTCAGACCCAC 57.960 47.619 0.00 0.00 0.00 4.61
205 206 3.181459 TGTTCTCGATTTGTTCAGACCCA 60.181 43.478 0.00 0.00 0.00 4.51
206 207 3.399330 TGTTCTCGATTTGTTCAGACCC 58.601 45.455 0.00 0.00 0.00 4.46
207 208 4.511826 ACTTGTTCTCGATTTGTTCAGACC 59.488 41.667 0.00 0.00 0.00 3.85
208 209 5.234329 TGACTTGTTCTCGATTTGTTCAGAC 59.766 40.000 0.00 0.00 0.00 3.51
209 210 5.356426 TGACTTGTTCTCGATTTGTTCAGA 58.644 37.500 0.00 0.00 0.00 3.27
210 211 5.333645 CCTGACTTGTTCTCGATTTGTTCAG 60.334 44.000 0.00 0.00 0.00 3.02
211 212 4.511454 CCTGACTTGTTCTCGATTTGTTCA 59.489 41.667 0.00 0.00 0.00 3.18
212 213 4.083802 CCCTGACTTGTTCTCGATTTGTTC 60.084 45.833 0.00 0.00 0.00 3.18
213 214 3.815401 CCCTGACTTGTTCTCGATTTGTT 59.185 43.478 0.00 0.00 0.00 2.83
214 215 3.071023 TCCCTGACTTGTTCTCGATTTGT 59.929 43.478 0.00 0.00 0.00 2.83
215 216 3.664107 TCCCTGACTTGTTCTCGATTTG 58.336 45.455 0.00 0.00 0.00 2.32
216 217 4.319177 CTTCCCTGACTTGTTCTCGATTT 58.681 43.478 0.00 0.00 0.00 2.17
217 218 3.866449 GCTTCCCTGACTTGTTCTCGATT 60.866 47.826 0.00 0.00 0.00 3.34
218 219 2.354203 GCTTCCCTGACTTGTTCTCGAT 60.354 50.000 0.00 0.00 0.00 3.59
219 220 1.000955 GCTTCCCTGACTTGTTCTCGA 59.999 52.381 0.00 0.00 0.00 4.04
220 221 1.001406 AGCTTCCCTGACTTGTTCTCG 59.999 52.381 0.00 0.00 0.00 4.04
221 222 2.037772 TGAGCTTCCCTGACTTGTTCTC 59.962 50.000 0.00 0.00 0.00 2.87
222 223 2.050144 TGAGCTTCCCTGACTTGTTCT 58.950 47.619 0.00 0.00 0.00 3.01
223 224 2.550830 TGAGCTTCCCTGACTTGTTC 57.449 50.000 0.00 0.00 0.00 3.18
224 225 3.073650 AGAATGAGCTTCCCTGACTTGTT 59.926 43.478 0.00 0.00 34.11 2.83
225 226 2.641815 AGAATGAGCTTCCCTGACTTGT 59.358 45.455 0.00 0.00 34.11 3.16
226 227 3.347077 AGAATGAGCTTCCCTGACTTG 57.653 47.619 0.00 0.00 34.11 3.16
227 228 4.780021 TCTAAGAATGAGCTTCCCTGACTT 59.220 41.667 0.00 0.00 34.11 3.01
228 229 4.357325 TCTAAGAATGAGCTTCCCTGACT 58.643 43.478 0.00 0.00 34.11 3.41
229 230 4.442753 CCTCTAAGAATGAGCTTCCCTGAC 60.443 50.000 0.00 0.00 34.11 3.51
230 231 3.708631 CCTCTAAGAATGAGCTTCCCTGA 59.291 47.826 0.00 0.00 34.11 3.86
231 232 3.743899 GCCTCTAAGAATGAGCTTCCCTG 60.744 52.174 0.00 0.00 34.11 4.45
232 233 2.437651 GCCTCTAAGAATGAGCTTCCCT 59.562 50.000 0.00 0.00 34.11 4.20
233 234 2.437651 AGCCTCTAAGAATGAGCTTCCC 59.562 50.000 0.00 0.00 34.11 3.97
234 235 3.727726 GAGCCTCTAAGAATGAGCTTCC 58.272 50.000 0.00 0.00 34.11 3.46
235 236 3.380142 CGAGCCTCTAAGAATGAGCTTC 58.620 50.000 0.00 0.00 0.00 3.86
236 237 2.102252 CCGAGCCTCTAAGAATGAGCTT 59.898 50.000 0.00 0.00 0.00 3.74
237 238 1.686052 CCGAGCCTCTAAGAATGAGCT 59.314 52.381 0.00 0.00 0.00 4.09
238 239 1.410882 ACCGAGCCTCTAAGAATGAGC 59.589 52.381 0.00 0.00 0.00 4.26
239 240 3.004944 GGTACCGAGCCTCTAAGAATGAG 59.995 52.174 0.00 0.00 0.00 2.90
240 241 2.957006 GGTACCGAGCCTCTAAGAATGA 59.043 50.000 0.00 0.00 0.00 2.57
241 242 2.036089 GGGTACCGAGCCTCTAAGAATG 59.964 54.545 5.65 0.00 40.86 2.67
242 243 2.317973 GGGTACCGAGCCTCTAAGAAT 58.682 52.381 5.65 0.00 40.86 2.40
243 244 1.772836 GGGTACCGAGCCTCTAAGAA 58.227 55.000 5.65 0.00 40.86 2.52
244 245 3.509517 GGGTACCGAGCCTCTAAGA 57.490 57.895 5.65 0.00 40.86 2.10
261 262 4.366684 GGCTGGACCCCTGGTTGG 62.367 72.222 0.00 0.00 35.25 3.77
262 263 2.655077 TTTGGCTGGACCCCTGGTTG 62.655 60.000 0.00 0.00 35.25 3.77
263 264 1.955458 TTTTGGCTGGACCCCTGGTT 61.955 55.000 0.00 0.00 35.25 3.67
264 265 1.739608 ATTTTGGCTGGACCCCTGGT 61.740 55.000 0.00 0.00 39.44 4.00
265 266 0.545071 AATTTTGGCTGGACCCCTGG 60.545 55.000 0.00 0.00 37.83 4.45
266 267 0.609662 CAATTTTGGCTGGACCCCTG 59.390 55.000 0.00 0.00 37.83 4.45
267 268 0.545071 CCAATTTTGGCTGGACCCCT 60.545 55.000 0.00 0.00 42.21 4.79
268 269 1.982430 CCAATTTTGGCTGGACCCC 59.018 57.895 0.00 0.00 42.21 4.95
278 279 2.818921 TGAGGATGGGACCCAATTTTG 58.181 47.619 19.58 0.00 36.95 2.44
279 280 3.782413 ATGAGGATGGGACCCAATTTT 57.218 42.857 19.58 0.00 36.95 1.82
280 281 3.630828 GGAATGAGGATGGGACCCAATTT 60.631 47.826 19.58 5.43 36.95 1.82
281 282 2.091111 GGAATGAGGATGGGACCCAATT 60.091 50.000 19.58 12.37 36.95 2.32
282 283 1.500736 GGAATGAGGATGGGACCCAAT 59.499 52.381 19.58 6.64 36.95 3.16
283 284 0.926293 GGAATGAGGATGGGACCCAA 59.074 55.000 19.58 0.00 36.95 4.12
284 285 0.993509 GGGAATGAGGATGGGACCCA 60.994 60.000 17.73 17.73 38.19 4.51
285 286 0.699231 AGGGAATGAGGATGGGACCC 60.699 60.000 2.45 2.45 36.47 4.46
286 287 2.118403 TAGGGAATGAGGATGGGACC 57.882 55.000 0.00 0.00 0.00 4.46
287 288 3.251484 TCATAGGGAATGAGGATGGGAC 58.749 50.000 0.00 0.00 39.77 4.46
288 289 3.654146 TCATAGGGAATGAGGATGGGA 57.346 47.619 0.00 0.00 39.77 4.37
289 290 3.912528 TCTTCATAGGGAATGAGGATGGG 59.087 47.826 0.00 0.00 43.61 4.00
290 291 5.309020 TCTTCTTCATAGGGAATGAGGATGG 59.691 44.000 10.84 4.73 46.59 3.51
291 292 6.430962 TCTTCTTCATAGGGAATGAGGATG 57.569 41.667 1.31 4.32 46.59 3.51
292 293 7.457380 TTTCTTCTTCATAGGGAATGAGGAT 57.543 36.000 1.31 0.00 46.59 3.24
293 294 6.891306 TTTCTTCTTCATAGGGAATGAGGA 57.109 37.500 0.00 0.00 45.95 3.71
294 295 8.530804 AAATTTCTTCTTCATAGGGAATGAGG 57.469 34.615 0.00 0.00 45.32 3.86
327 328 7.169583 ATCCAAAGGATCAAGGAGGACATCC 62.170 48.000 0.00 0.00 43.11 3.51
328 329 3.200825 TCCAAAGGATCAAGGAGGACATC 59.799 47.826 0.00 0.00 0.00 3.06
329 330 3.192944 TCCAAAGGATCAAGGAGGACAT 58.807 45.455 0.00 0.00 0.00 3.06
330 331 2.631384 TCCAAAGGATCAAGGAGGACA 58.369 47.619 0.00 0.00 0.00 4.02
331 332 3.054065 ACATCCAAAGGATCAAGGAGGAC 60.054 47.826 11.75 0.00 40.98 3.85
332 333 3.054139 CACATCCAAAGGATCAAGGAGGA 60.054 47.826 11.75 5.03 40.98 3.71
333 334 3.285484 CACATCCAAAGGATCAAGGAGG 58.715 50.000 0.00 0.14 40.98 4.30
334 335 3.944015 GACACATCCAAAGGATCAAGGAG 59.056 47.826 0.00 0.00 40.98 3.69
335 336 3.619733 CGACACATCCAAAGGATCAAGGA 60.620 47.826 0.00 0.00 40.98 3.36
336 337 2.679837 CGACACATCCAAAGGATCAAGG 59.320 50.000 0.00 0.00 40.98 3.61
337 338 2.096496 GCGACACATCCAAAGGATCAAG 59.904 50.000 0.00 0.00 40.98 3.02
338 339 2.083774 GCGACACATCCAAAGGATCAA 58.916 47.619 0.00 0.00 40.98 2.57
339 340 1.678728 GGCGACACATCCAAAGGATCA 60.679 52.381 0.00 0.00 40.98 2.92
340 341 1.017387 GGCGACACATCCAAAGGATC 58.983 55.000 0.00 0.00 40.98 3.36
341 342 0.327924 TGGCGACACATCCAAAGGAT 59.672 50.000 0.00 0.00 38.15 3.24
342 343 0.321564 CTGGCGACACATCCAAAGGA 60.322 55.000 0.00 0.00 35.60 3.36
343 344 0.321564 TCTGGCGACACATCCAAAGG 60.322 55.000 0.00 0.00 35.60 3.11
344 345 1.197721 GTTCTGGCGACACATCCAAAG 59.802 52.381 0.00 0.00 35.60 2.77
345 346 1.202758 AGTTCTGGCGACACATCCAAA 60.203 47.619 0.00 0.00 35.60 3.28
346 347 0.396435 AGTTCTGGCGACACATCCAA 59.604 50.000 0.00 0.00 35.60 3.53
347 348 0.320683 CAGTTCTGGCGACACATCCA 60.321 55.000 0.00 0.00 35.60 3.41
348 349 0.320771 ACAGTTCTGGCGACACATCC 60.321 55.000 0.00 0.00 35.60 3.51
349 350 0.792640 CACAGTTCTGGCGACACATC 59.207 55.000 0.00 0.00 35.60 3.06
350 351 0.392706 TCACAGTTCTGGCGACACAT 59.607 50.000 0.00 0.00 35.60 3.21
351 352 0.392706 ATCACAGTTCTGGCGACACA 59.607 50.000 0.00 0.00 35.60 3.72
352 353 1.071605 GATCACAGTTCTGGCGACAC 58.928 55.000 0.00 0.00 35.60 3.67
353 354 0.037326 GGATCACAGTTCTGGCGACA 60.037 55.000 0.00 0.00 39.59 4.35
354 355 0.247736 AGGATCACAGTTCTGGCGAC 59.752 55.000 4.82 0.00 0.00 5.19
355 356 0.532573 GAGGATCACAGTTCTGGCGA 59.467 55.000 4.82 1.41 33.17 5.54
356 357 0.460987 GGAGGATCACAGTTCTGGCG 60.461 60.000 4.82 0.00 36.25 5.69
357 358 0.107459 GGGAGGATCACAGTTCTGGC 60.107 60.000 4.82 0.00 39.41 4.85
358 359 0.176680 CGGGAGGATCACAGTTCTGG 59.823 60.000 4.82 0.00 39.81 3.86
359 360 1.135915 CTCGGGAGGATCACAGTTCTG 59.864 57.143 0.00 0.00 39.81 3.02
360 361 1.479709 CTCGGGAGGATCACAGTTCT 58.520 55.000 0.00 0.00 39.81 3.01
361 362 0.179097 GCTCGGGAGGATCACAGTTC 60.179 60.000 0.00 0.00 39.81 3.01
362 363 1.901085 GCTCGGGAGGATCACAGTT 59.099 57.895 0.00 0.00 39.81 3.16
363 364 2.418910 CGCTCGGGAGGATCACAGT 61.419 63.158 0.00 0.00 39.81 3.55
364 365 2.069465 CTCGCTCGGGAGGATCACAG 62.069 65.000 3.29 0.00 39.81 3.66
365 366 2.044352 TCGCTCGGGAGGATCACA 60.044 61.111 0.00 0.00 39.81 3.58
366 367 1.384989 TTCTCGCTCGGGAGGATCAC 61.385 60.000 10.55 0.00 36.25 3.06
367 368 1.076995 TTCTCGCTCGGGAGGATCA 60.077 57.895 10.55 0.00 36.25 2.92
368 369 1.360911 GTTCTCGCTCGGGAGGATC 59.639 63.158 10.55 0.00 34.74 3.36
369 370 0.757188 ATGTTCTCGCTCGGGAGGAT 60.757 55.000 10.55 0.00 34.74 3.24
370 371 0.106868 TATGTTCTCGCTCGGGAGGA 60.107 55.000 10.55 0.00 34.74 3.71
371 372 0.030908 GTATGTTCTCGCTCGGGAGG 59.969 60.000 10.55 0.00 34.74 4.30
372 373 0.030908 GGTATGTTCTCGCTCGGGAG 59.969 60.000 4.76 4.76 35.32 4.30
373 374 0.681887 TGGTATGTTCTCGCTCGGGA 60.682 55.000 0.00 0.00 0.00 5.14
374 375 0.249073 CTGGTATGTTCTCGCTCGGG 60.249 60.000 0.00 0.00 0.00 5.14
375 376 0.738975 TCTGGTATGTTCTCGCTCGG 59.261 55.000 0.00 0.00 0.00 4.63
376 377 2.097629 TCTTCTGGTATGTTCTCGCTCG 59.902 50.000 0.00 0.00 0.00 5.03
377 378 3.490078 CCTCTTCTGGTATGTTCTCGCTC 60.490 52.174 0.00 0.00 0.00 5.03
378 379 2.428890 CCTCTTCTGGTATGTTCTCGCT 59.571 50.000 0.00 0.00 0.00 4.93
379 380 2.815478 CCTCTTCTGGTATGTTCTCGC 58.185 52.381 0.00 0.00 0.00 5.03
380 381 2.428890 AGCCTCTTCTGGTATGTTCTCG 59.571 50.000 0.00 0.00 0.00 4.04
381 382 3.449018 TGAGCCTCTTCTGGTATGTTCTC 59.551 47.826 0.00 0.00 0.00 2.87
382 383 3.196685 GTGAGCCTCTTCTGGTATGTTCT 59.803 47.826 0.00 0.00 0.00 3.01
383 384 3.526534 GTGAGCCTCTTCTGGTATGTTC 58.473 50.000 0.00 0.00 0.00 3.18
384 385 2.237392 GGTGAGCCTCTTCTGGTATGTT 59.763 50.000 0.00 0.00 0.00 2.71
385 386 1.834263 GGTGAGCCTCTTCTGGTATGT 59.166 52.381 0.00 0.00 0.00 2.29
386 387 1.139853 GGGTGAGCCTCTTCTGGTATG 59.860 57.143 0.00 0.00 34.45 2.39
387 388 1.501582 GGGTGAGCCTCTTCTGGTAT 58.498 55.000 0.00 0.00 34.45 2.73
388 389 0.617820 GGGGTGAGCCTCTTCTGGTA 60.618 60.000 0.00 0.00 34.45 3.25
389 390 1.920835 GGGGTGAGCCTCTTCTGGT 60.921 63.158 0.00 0.00 34.45 4.00
390 391 0.325671 TAGGGGTGAGCCTCTTCTGG 60.326 60.000 0.00 0.00 45.18 3.86
391 392 1.484240 CTTAGGGGTGAGCCTCTTCTG 59.516 57.143 0.00 0.00 45.18 3.02
392 393 1.623834 CCTTAGGGGTGAGCCTCTTCT 60.624 57.143 0.00 0.00 45.18 2.85
393 394 0.833949 CCTTAGGGGTGAGCCTCTTC 59.166 60.000 0.00 0.00 45.18 2.87
394 395 0.621862 CCCTTAGGGGTGAGCCTCTT 60.622 60.000 10.02 0.00 45.18 2.85
490 492 1.297364 GTGCAATGCAGGCCCAATT 59.703 52.632 8.73 0.00 40.08 2.32
504 506 1.962822 CTGCTTTGAGGAGCGTGCA 60.963 57.895 0.00 0.00 45.64 4.57
556 558 2.433318 GGCTCGCGAGAAACTGCT 60.433 61.111 38.74 0.00 41.32 4.24
721 736 0.983378 GGTGGTGAGGCAGTAGGGAT 60.983 60.000 0.00 0.00 0.00 3.85
746 761 1.065926 ACAGATCTGAAATCGCAGCCA 60.066 47.619 29.27 0.00 35.86 4.75
868 896 0.459237 GAGACGAGGACGACGTAGGA 60.459 60.000 0.00 0.00 43.97 2.94
967 996 1.008194 CGACGGTTCGTTCAGTGGA 60.008 57.895 0.00 0.00 41.37 4.02
1019 1048 0.533531 TGCTGCTGCCTGGATTATCG 60.534 55.000 13.47 0.00 38.71 2.92
1039 1068 4.641541 CCATGCCTGAATCACACTAATCAA 59.358 41.667 0.00 0.00 0.00 2.57
1245 1274 1.142688 ACAACCCCCTGCTCCTGAAT 61.143 55.000 0.00 0.00 0.00 2.57
1291 1320 0.963962 AACATGGCCACTTGCTCTTG 59.036 50.000 8.16 1.39 40.92 3.02
1352 1381 2.455674 TGATCTCCTGAACGTGTTGG 57.544 50.000 0.00 0.00 0.00 3.77
1416 1445 0.614979 TCTCTCCTCCAAACTCCCCG 60.615 60.000 0.00 0.00 0.00 5.73
1423 1452 3.966006 CTCCTGATCATCTCTCCTCCAAA 59.034 47.826 0.00 0.00 0.00 3.28
1426 1455 3.157087 GTCTCCTGATCATCTCTCCTCC 58.843 54.545 0.00 0.00 0.00 4.30
1495 1524 4.697352 GTCAATGCTCACCTTGAAGTATGT 59.303 41.667 0.00 0.00 33.45 2.29
1577 1609 6.400568 CAATCCTAAAAATGGCATCACAAGT 58.599 36.000 0.00 0.00 0.00 3.16
1626 1658 0.888619 TAGGAACTCTGGCAGTGACG 59.111 55.000 22.25 8.61 41.75 4.35
1688 1720 3.294079 GCAGCAAGCACATTTTGGT 57.706 47.368 0.00 0.00 44.79 3.67
1821 1853 2.334977 TCTCCAAGGTAGAACTTGCCA 58.665 47.619 1.54 0.00 44.98 4.92
1939 1971 5.717178 AGTGTCTGAGATTAAACAGCTCCTA 59.283 40.000 0.00 0.00 37.08 2.94
2177 2209 2.821378 TCATTGTCAAATGCCTCCACAG 59.179 45.455 0.00 0.00 42.55 3.66
2271 2303 4.758674 TGCTTCTTGTTCTTCTTCCATCTG 59.241 41.667 0.00 0.00 0.00 2.90
2303 2374 0.390866 TCTGCTTCAGCTGCTACTGC 60.391 55.000 9.47 7.39 42.66 4.40
2304 2375 2.001159 CTTCTGCTTCAGCTGCTACTG 58.999 52.381 9.47 4.65 42.66 2.74
2305 2376 1.675415 GCTTCTGCTTCAGCTGCTACT 60.675 52.381 9.47 0.00 42.66 2.57
2306 2377 0.726256 GCTTCTGCTTCAGCTGCTAC 59.274 55.000 9.47 0.36 42.66 3.58
2307 2378 0.322648 TGCTTCTGCTTCAGCTGCTA 59.677 50.000 9.47 0.00 42.66 3.49
2327 2398 7.273457 TCTTCCTCTCCTCTTCTTCTACTTA 57.727 40.000 0.00 0.00 0.00 2.24
2443 2538 5.590259 AGCGCCATCTACTTAAACAAATGAT 59.410 36.000 2.29 0.00 0.00 2.45
2497 2592 5.468746 TGTTGTCACCATTTCTAACTAGTGC 59.531 40.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.