Multiple sequence alignment - TraesCS5A01G437900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G437900 chr5A 100.000 4270 0 0 712 4981 619689366 619693635 0.000000e+00 7886.0
1 TraesCS5A01G437900 chr5A 100.000 195 0 0 1 195 619688655 619688849 1.320000e-95 361.0
2 TraesCS5A01G437900 chr5A 93.985 133 3 4 2913 3040 619691428 619691560 3.930000e-46 196.0
3 TraesCS5A01G437900 chr5A 93.985 133 3 4 2774 2906 619691567 619691694 3.930000e-46 196.0
4 TraesCS5A01G437900 chr5A 97.674 86 2 0 2611 2696 619691182 619691267 1.120000e-31 148.0
5 TraesCS5A01G437900 chr5A 97.674 86 2 0 2528 2613 619691265 619691350 1.120000e-31 148.0
6 TraesCS5A01G437900 chr5A 93.878 98 6 0 2774 2871 619691336 619691433 1.120000e-31 148.0
7 TraesCS5A01G437900 chr5A 93.878 98 6 0 2682 2779 619691428 619691525 1.120000e-31 148.0
8 TraesCS5A01G437900 chr5A 91.176 102 4 2 2909 3005 619691332 619691433 3.130000e-27 134.0
9 TraesCS5A01G437900 chr5A 91.176 102 4 2 2678 2779 619691563 619691659 3.130000e-27 134.0
10 TraesCS5A01G437900 chr5D 92.120 2132 92 34 2909 4981 495627787 495629901 0.000000e+00 2937.0
11 TraesCS5A01G437900 chr5D 80.254 866 88 35 1047 1882 495626175 495626987 4.320000e-160 575.0
12 TraesCS5A01G437900 chr5D 79.032 496 70 21 2204 2684 495627353 495627829 4.840000e-80 309.0
13 TraesCS5A01G437900 chr5D 95.070 142 7 0 2638 2779 495627747 495627888 1.800000e-54 224.0
14 TraesCS5A01G437900 chr5D 94.737 133 7 0 2774 2906 495627791 495627923 1.820000e-49 207.0
15 TraesCS5A01G437900 chr5D 90.833 120 6 5 2606 2720 495627674 495627793 6.680000e-34 156.0
16 TraesCS5A01G437900 chr5D 93.220 59 4 0 2555 2613 495627747 495627805 2.470000e-13 87.9
17 TraesCS5A01G437900 chr5B 87.474 2435 181 68 2204 4563 612681058 612683443 0.000000e+00 2693.0
18 TraesCS5A01G437900 chr5B 81.071 1569 129 73 800 2268 612679543 612681043 0.000000e+00 1098.0
19 TraesCS5A01G437900 chr5B 89.381 226 17 6 2555 2779 612681503 612681722 1.370000e-70 278.0
20 TraesCS5A01G437900 chr5B 78.533 368 49 23 2555 2906 612681542 612681895 1.090000e-51 215.0
21 TraesCS5A01G437900 chr5B 92.593 135 4 3 2909 3038 612681621 612681754 6.580000e-44 189.0
22 TraesCS5A01G437900 chr5B 95.098 102 5 0 2678 2779 612681759 612681860 1.430000e-35 161.0
23 TraesCS5A01G437900 chr5B 84.118 170 17 9 2555 2720 612681464 612681627 6.680000e-34 156.0
24 TraesCS5A01G437900 chr5B 87.379 103 8 3 2638 2735 612681464 612681566 4.080000e-21 113.0
25 TraesCS5A01G437900 chr5B 94.915 59 3 0 2555 2613 612681581 612681639 5.310000e-15 93.5
26 TraesCS5A01G437900 chr1D 80.507 631 61 34 977 1578 417544194 417544791 1.280000e-115 427.0
27 TraesCS5A01G437900 chr3D 79.814 644 66 33 994 1608 579610034 579610642 1.290000e-110 411.0
28 TraesCS5A01G437900 chr3D 80.699 544 66 22 1047 1575 120908348 120908867 2.170000e-103 387.0
29 TraesCS5A01G437900 chr3D 75.648 193 41 6 1107 1296 308985783 308985594 1.910000e-14 91.6
30 TraesCS5A01G437900 chr7B 76.586 662 84 38 977 1608 59233533 59234153 1.050000e-76 298.0
31 TraesCS5A01G437900 chr2D 78.540 452 90 6 3226 3672 37612935 37613384 1.750000e-74 291.0
32 TraesCS5A01G437900 chr2A 77.876 452 93 6 3226 3672 42475204 42475653 1.770000e-69 274.0
33 TraesCS5A01G437900 chr7A 86.266 233 15 10 998 1216 663745034 663744805 2.320000e-58 237.0
34 TraesCS5A01G437900 chr4D 84.000 250 35 4 1067 1314 447639110 447639356 8.340000e-58 235.0
35 TraesCS5A01G437900 chr4B 84.211 247 34 4 1067 1312 560012806 560013048 8.340000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G437900 chr5A 619688655 619693635 4980 False 949.900000 7886 95.342600 1 4981 10 chr5A.!!$F1 4980
1 TraesCS5A01G437900 chr5D 495626175 495629901 3726 False 642.271429 2937 89.323714 1047 4981 7 chr5D.!!$F1 3934
2 TraesCS5A01G437900 chr5B 612679543 612683443 3900 False 555.166667 2693 87.840222 800 4563 9 chr5B.!!$F1 3763
3 TraesCS5A01G437900 chr1D 417544194 417544791 597 False 427.000000 427 80.507000 977 1578 1 chr1D.!!$F1 601
4 TraesCS5A01G437900 chr3D 579610034 579610642 608 False 411.000000 411 79.814000 994 1608 1 chr3D.!!$F2 614
5 TraesCS5A01G437900 chr3D 120908348 120908867 519 False 387.000000 387 80.699000 1047 1575 1 chr3D.!!$F1 528
6 TraesCS5A01G437900 chr7B 59233533 59234153 620 False 298.000000 298 76.586000 977 1608 1 chr7B.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.037590 TGTGGTCTATGTTGGCCCAC 59.962 55.0 0.00 0.0 44.61 4.61 F
740 741 0.038310 CTTCCAGAACCTTCCACCCC 59.962 60.0 0.00 0.0 0.00 4.95 F
1474 1542 0.107897 TTGCCTCGTGTTCACACAGT 60.108 50.0 10.61 0.0 46.75 3.55 F
1656 1725 0.251209 GGGGTGAAAAGGAGGTCCAC 60.251 60.0 0.00 0.0 38.89 4.02 F
2296 2492 0.466124 GATAGTGTGGGACTGAGGGC 59.534 60.0 0.00 0.0 35.96 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1876 0.109723 TTGGGCACTTAGGTGGACAC 59.890 55.0 7.15 0.00 43.18 3.67 R
1989 2083 0.320771 ACGAACTACCAGCTGGCTTG 60.321 55.0 33.06 23.22 39.32 4.01 R
3416 3700 0.252479 CCATCAAGAGCTGCCTGTCT 59.748 55.0 0.00 0.00 0.00 3.41 R
3580 3864 0.042431 ACTCTGGGAGAGCAGATGGT 59.958 55.0 0.33 0.00 46.12 3.55 R
4228 4516 0.309922 CTTTGCACAGCAGACAGTGG 59.690 55.0 0.00 0.00 40.61 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.280186 GCTCCGGCCCGTTATCTG 60.280 66.667 0.85 0.00 0.00 2.90
19 20 3.090219 GCTCCGGCCCGTTATCTGT 62.090 63.158 0.85 0.00 0.00 3.41
20 21 1.227263 CTCCGGCCCGTTATCTGTG 60.227 63.158 0.85 0.00 0.00 3.66
21 22 2.203015 CCGGCCCGTTATCTGTGG 60.203 66.667 0.85 0.00 0.00 4.17
22 23 2.582436 CGGCCCGTTATCTGTGGT 59.418 61.111 0.00 0.00 0.00 4.16
23 24 1.520787 CGGCCCGTTATCTGTGGTC 60.521 63.158 0.00 0.00 0.00 4.02
24 25 1.905512 GGCCCGTTATCTGTGGTCT 59.094 57.895 0.00 0.00 0.00 3.85
25 26 1.117150 GGCCCGTTATCTGTGGTCTA 58.883 55.000 0.00 0.00 0.00 2.59
26 27 1.692519 GGCCCGTTATCTGTGGTCTAT 59.307 52.381 0.00 0.00 0.00 1.98
27 28 2.548067 GGCCCGTTATCTGTGGTCTATG 60.548 54.545 0.00 0.00 0.00 2.23
28 29 2.102588 GCCCGTTATCTGTGGTCTATGT 59.897 50.000 0.00 0.00 0.00 2.29
29 30 3.431766 GCCCGTTATCTGTGGTCTATGTT 60.432 47.826 0.00 0.00 0.00 2.71
30 31 4.119862 CCCGTTATCTGTGGTCTATGTTG 58.880 47.826 0.00 0.00 0.00 3.33
31 32 4.119862 CCGTTATCTGTGGTCTATGTTGG 58.880 47.826 0.00 0.00 0.00 3.77
32 33 3.555956 CGTTATCTGTGGTCTATGTTGGC 59.444 47.826 0.00 0.00 0.00 4.52
33 34 2.717639 ATCTGTGGTCTATGTTGGCC 57.282 50.000 0.00 0.00 0.00 5.36
34 35 0.618458 TCTGTGGTCTATGTTGGCCC 59.382 55.000 0.00 0.00 0.00 5.80
35 36 0.327924 CTGTGGTCTATGTTGGCCCA 59.672 55.000 0.00 0.00 0.00 5.36
36 37 0.037590 TGTGGTCTATGTTGGCCCAC 59.962 55.000 0.00 0.00 44.61 4.61
37 38 0.679960 GTGGTCTATGTTGGCCCACC 60.680 60.000 4.19 0.00 39.71 4.61
64 65 3.799672 CCCGGACCGGCCCATTTA 61.800 66.667 28.37 0.00 46.86 1.40
65 66 2.513895 CCGGACCGGCCCATTTAT 59.486 61.111 22.37 0.00 41.17 1.40
66 67 1.599797 CCGGACCGGCCCATTTATC 60.600 63.158 22.37 0.00 41.17 1.75
67 68 1.599797 CGGACCGGCCCATTTATCC 60.600 63.158 7.85 0.00 0.00 2.59
68 69 1.599797 GGACCGGCCCATTTATCCG 60.600 63.158 0.00 0.00 42.58 4.18
69 70 1.147600 GACCGGCCCATTTATCCGT 59.852 57.895 0.00 0.00 41.46 4.69
70 71 1.153046 ACCGGCCCATTTATCCGTG 60.153 57.895 0.00 0.00 41.46 4.94
71 72 1.896660 CCGGCCCATTTATCCGTGG 60.897 63.158 0.00 0.00 41.46 4.94
72 73 1.153046 CGGCCCATTTATCCGTGGT 60.153 57.895 0.00 0.00 38.47 4.16
73 74 1.164041 CGGCCCATTTATCCGTGGTC 61.164 60.000 0.00 0.00 38.47 4.02
74 75 0.182775 GGCCCATTTATCCGTGGTCT 59.817 55.000 0.00 0.00 33.55 3.85
75 76 1.418637 GGCCCATTTATCCGTGGTCTA 59.581 52.381 0.00 0.00 33.55 2.59
76 77 2.039879 GGCCCATTTATCCGTGGTCTAT 59.960 50.000 0.00 0.00 33.55 1.98
77 78 3.074412 GCCCATTTATCCGTGGTCTATG 58.926 50.000 0.00 0.00 33.55 2.23
78 79 3.496160 GCCCATTTATCCGTGGTCTATGT 60.496 47.826 0.00 0.00 33.55 2.29
79 80 4.714632 CCCATTTATCCGTGGTCTATGTT 58.285 43.478 0.00 0.00 33.55 2.71
80 81 4.515191 CCCATTTATCCGTGGTCTATGTTG 59.485 45.833 0.00 0.00 33.55 3.33
81 82 4.515191 CCATTTATCCGTGGTCTATGTTGG 59.485 45.833 0.00 0.00 0.00 3.77
82 83 2.902705 TATCCGTGGTCTATGTTGGC 57.097 50.000 0.00 0.00 0.00 4.52
83 84 0.180406 ATCCGTGGTCTATGTTGGCC 59.820 55.000 0.00 0.00 0.00 5.36
84 85 1.451387 CCGTGGTCTATGTTGGCCC 60.451 63.158 0.00 0.00 0.00 5.80
85 86 1.298340 CGTGGTCTATGTTGGCCCA 59.702 57.895 0.00 0.00 0.00 5.36
86 87 1.024579 CGTGGTCTATGTTGGCCCAC 61.025 60.000 0.00 0.00 41.69 4.61
87 88 0.679960 GTGGTCTATGTTGGCCCACC 60.680 60.000 4.19 0.00 39.71 4.61
108 109 4.564110 GCCCGGCCCATGTACCTC 62.564 72.222 0.00 0.00 0.00 3.85
109 110 3.873812 CCCGGCCCATGTACCTCC 61.874 72.222 0.00 0.00 0.00 4.30
110 111 3.873812 CCGGCCCATGTACCTCCC 61.874 72.222 0.00 0.00 0.00 4.30
111 112 3.873812 CGGCCCATGTACCTCCCC 61.874 72.222 0.00 0.00 0.00 4.81
112 113 3.873812 GGCCCATGTACCTCCCCG 61.874 72.222 0.00 0.00 0.00 5.73
113 114 3.873812 GCCCATGTACCTCCCCGG 61.874 72.222 0.00 0.00 39.35 5.73
140 141 4.104417 GCGTCGCGTCTCTGTCCT 62.104 66.667 5.77 0.00 0.00 3.85
141 142 2.098680 CGTCGCGTCTCTGTCCTC 59.901 66.667 5.77 0.00 0.00 3.71
142 143 2.392181 CGTCGCGTCTCTGTCCTCT 61.392 63.158 5.77 0.00 0.00 3.69
143 144 1.426223 GTCGCGTCTCTGTCCTCTC 59.574 63.158 5.77 0.00 0.00 3.20
144 145 1.022451 GTCGCGTCTCTGTCCTCTCT 61.022 60.000 5.77 0.00 0.00 3.10
145 146 1.021920 TCGCGTCTCTGTCCTCTCTG 61.022 60.000 5.77 0.00 0.00 3.35
146 147 1.021920 CGCGTCTCTGTCCTCTCTGA 61.022 60.000 0.00 0.00 0.00 3.27
147 148 1.388547 GCGTCTCTGTCCTCTCTGAT 58.611 55.000 0.00 0.00 0.00 2.90
148 149 1.333619 GCGTCTCTGTCCTCTCTGATC 59.666 57.143 0.00 0.00 0.00 2.92
149 150 1.597195 CGTCTCTGTCCTCTCTGATCG 59.403 57.143 0.00 0.00 0.00 3.69
150 151 1.946768 GTCTCTGTCCTCTCTGATCGG 59.053 57.143 0.00 0.00 0.00 4.18
151 152 1.840635 TCTCTGTCCTCTCTGATCGGA 59.159 52.381 3.71 3.71 0.00 4.55
152 153 2.158827 TCTCTGTCCTCTCTGATCGGAG 60.159 54.545 23.48 23.48 34.14 4.63
153 154 1.840635 TCTGTCCTCTCTGATCGGAGA 59.159 52.381 28.49 28.49 45.75 3.71
162 163 4.594970 TCTCTGATCGGAGAGGATAATCC 58.405 47.826 27.16 0.00 43.63 3.01
163 164 3.699038 CTCTGATCGGAGAGGATAATCCC 59.301 52.174 24.92 0.00 43.63 3.85
164 165 2.763448 CTGATCGGAGAGGATAATCCCC 59.237 54.545 0.00 0.00 43.63 4.81
165 166 2.111792 TGATCGGAGAGGATAATCCCCA 59.888 50.000 0.00 0.00 43.63 4.96
166 167 2.011122 TCGGAGAGGATAATCCCCAC 57.989 55.000 0.00 0.00 37.19 4.61
167 168 0.603569 CGGAGAGGATAATCCCCACG 59.396 60.000 0.00 0.00 37.19 4.94
168 169 0.321996 GGAGAGGATAATCCCCACGC 59.678 60.000 0.00 0.00 37.19 5.34
169 170 0.321996 GAGAGGATAATCCCCACGCC 59.678 60.000 0.00 0.00 37.19 5.68
170 171 0.399949 AGAGGATAATCCCCACGCCA 60.400 55.000 0.00 0.00 37.19 5.69
171 172 0.250338 GAGGATAATCCCCACGCCAC 60.250 60.000 0.00 0.00 37.19 5.01
172 173 0.986019 AGGATAATCCCCACGCCACA 60.986 55.000 0.00 0.00 37.19 4.17
173 174 0.818040 GGATAATCCCCACGCCACAC 60.818 60.000 0.00 0.00 0.00 3.82
174 175 0.107410 GATAATCCCCACGCCACACA 60.107 55.000 0.00 0.00 0.00 3.72
175 176 0.550914 ATAATCCCCACGCCACACAT 59.449 50.000 0.00 0.00 0.00 3.21
176 177 0.393673 TAATCCCCACGCCACACATG 60.394 55.000 0.00 0.00 0.00 3.21
177 178 2.424842 AATCCCCACGCCACACATGT 62.425 55.000 0.00 0.00 0.00 3.21
178 179 2.819984 ATCCCCACGCCACACATGTC 62.820 60.000 0.00 0.00 0.00 3.06
179 180 3.055719 CCCACGCCACACATGTCC 61.056 66.667 0.00 0.00 0.00 4.02
180 181 2.281414 CCACGCCACACATGTCCA 60.281 61.111 0.00 0.00 0.00 4.02
181 182 2.616330 CCACGCCACACATGTCCAC 61.616 63.158 0.00 0.00 0.00 4.02
182 183 2.281484 ACGCCACACATGTCCACC 60.281 61.111 0.00 0.00 0.00 4.61
183 184 3.422303 CGCCACACATGTCCACCG 61.422 66.667 0.00 0.00 0.00 4.94
184 185 3.737172 GCCACACATGTCCACCGC 61.737 66.667 0.00 0.00 0.00 5.68
185 186 2.032528 CCACACATGTCCACCGCT 59.967 61.111 0.00 0.00 0.00 5.52
186 187 1.600636 CCACACATGTCCACCGCTT 60.601 57.895 0.00 0.00 0.00 4.68
187 188 1.577328 CCACACATGTCCACCGCTTC 61.577 60.000 0.00 0.00 0.00 3.86
188 189 1.302511 ACACATGTCCACCGCTTCC 60.303 57.895 0.00 0.00 0.00 3.46
189 190 1.003355 CACATGTCCACCGCTTCCT 60.003 57.895 0.00 0.00 0.00 3.36
190 191 1.021390 CACATGTCCACCGCTTCCTC 61.021 60.000 0.00 0.00 0.00 3.71
191 192 1.296392 CATGTCCACCGCTTCCTCA 59.704 57.895 0.00 0.00 0.00 3.86
192 193 0.321564 CATGTCCACCGCTTCCTCAA 60.322 55.000 0.00 0.00 0.00 3.02
193 194 0.400213 ATGTCCACCGCTTCCTCAAA 59.600 50.000 0.00 0.00 0.00 2.69
194 195 0.181587 TGTCCACCGCTTCCTCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
731 732 3.423154 CGCACCGCTTCCAGAACC 61.423 66.667 0.00 0.00 0.00 3.62
732 733 2.032681 GCACCGCTTCCAGAACCT 59.967 61.111 0.00 0.00 0.00 3.50
733 734 1.600916 GCACCGCTTCCAGAACCTT 60.601 57.895 0.00 0.00 0.00 3.50
734 735 1.578206 GCACCGCTTCCAGAACCTTC 61.578 60.000 0.00 0.00 0.00 3.46
735 736 0.955919 CACCGCTTCCAGAACCTTCC 60.956 60.000 0.00 0.00 0.00 3.46
736 737 1.374947 CCGCTTCCAGAACCTTCCA 59.625 57.895 0.00 0.00 0.00 3.53
737 738 0.955919 CCGCTTCCAGAACCTTCCAC 60.956 60.000 0.00 0.00 0.00 4.02
738 739 0.955919 CGCTTCCAGAACCTTCCACC 60.956 60.000 0.00 0.00 0.00 4.61
739 740 0.609406 GCTTCCAGAACCTTCCACCC 60.609 60.000 0.00 0.00 0.00 4.61
740 741 0.038310 CTTCCAGAACCTTCCACCCC 59.962 60.000 0.00 0.00 0.00 4.95
741 742 1.432023 TTCCAGAACCTTCCACCCCC 61.432 60.000 0.00 0.00 0.00 5.40
755 756 2.999063 CCCCCAAGCCAAGCCAAG 60.999 66.667 0.00 0.00 0.00 3.61
756 757 3.698820 CCCCAAGCCAAGCCAAGC 61.699 66.667 0.00 0.00 0.00 4.01
757 758 3.698820 CCCAAGCCAAGCCAAGCC 61.699 66.667 0.00 0.00 0.00 4.35
758 759 2.918802 CCAAGCCAAGCCAAGCCA 60.919 61.111 0.00 0.00 0.00 4.75
759 760 2.509651 CCAAGCCAAGCCAAGCCAA 61.510 57.895 0.00 0.00 0.00 4.52
760 761 1.005394 CAAGCCAAGCCAAGCCAAG 60.005 57.895 0.00 0.00 0.00 3.61
761 762 2.875804 AAGCCAAGCCAAGCCAAGC 61.876 57.895 0.00 0.00 0.00 4.01
762 763 4.383861 GCCAAGCCAAGCCAAGCC 62.384 66.667 0.00 0.00 0.00 4.35
763 764 2.918802 CCAAGCCAAGCCAAGCCA 60.919 61.111 0.00 0.00 0.00 4.75
764 765 2.509651 CCAAGCCAAGCCAAGCCAA 61.510 57.895 0.00 0.00 0.00 4.52
765 766 1.005394 CAAGCCAAGCCAAGCCAAG 60.005 57.895 0.00 0.00 0.00 3.61
766 767 2.875804 AAGCCAAGCCAAGCCAAGC 61.876 57.895 0.00 0.00 0.00 4.01
767 768 4.383861 GCCAAGCCAAGCCAAGCC 62.384 66.667 0.00 0.00 0.00 4.35
768 769 2.918802 CCAAGCCAAGCCAAGCCA 60.919 61.111 0.00 0.00 0.00 4.75
769 770 2.509651 CCAAGCCAAGCCAAGCCAA 61.510 57.895 0.00 0.00 0.00 4.52
770 771 1.005394 CAAGCCAAGCCAAGCCAAG 60.005 57.895 0.00 0.00 0.00 3.61
771 772 1.458209 AAGCCAAGCCAAGCCAAGT 60.458 52.632 0.00 0.00 0.00 3.16
772 773 1.751349 AAGCCAAGCCAAGCCAAGTG 61.751 55.000 0.00 0.00 0.00 3.16
773 774 3.053828 CCAAGCCAAGCCAAGTGG 58.946 61.111 0.00 0.00 39.33 4.00
795 796 3.693245 CGCTGCTACGGCTACAAG 58.307 61.111 0.00 0.00 39.59 3.16
796 797 1.153823 CGCTGCTACGGCTACAAGT 60.154 57.895 0.00 0.00 39.59 3.16
797 798 1.140407 CGCTGCTACGGCTACAAGTC 61.140 60.000 0.00 0.00 39.59 3.01
798 799 0.173708 GCTGCTACGGCTACAAGTCT 59.826 55.000 0.00 0.00 39.59 3.24
803 804 2.645802 CTACGGCTACAAGTCTCTCCT 58.354 52.381 0.00 0.00 0.00 3.69
814 815 4.527583 CTCTCCTCCAGCGCTGCC 62.528 72.222 31.96 0.00 0.00 4.85
851 857 3.681835 GTGCCTCGTCACGGGTCT 61.682 66.667 0.00 0.00 0.00 3.85
857 863 3.834799 CGTCACGGGTCTAGGCCC 61.835 72.222 23.62 23.62 45.21 5.80
944 954 2.907917 CACGGGCGAAAAACCCCA 60.908 61.111 0.00 0.00 45.37 4.96
945 955 2.116556 ACGGGCGAAAAACCCCAT 59.883 55.556 0.00 0.00 45.37 4.00
946 956 1.974875 ACGGGCGAAAAACCCCATC 60.975 57.895 0.00 0.00 45.37 3.51
947 957 2.706834 CGGGCGAAAAACCCCATCC 61.707 63.158 0.00 0.00 45.37 3.51
948 958 2.355986 GGGCGAAAAACCCCATCCC 61.356 63.158 0.00 0.00 42.01 3.85
949 959 1.608046 GGCGAAAAACCCCATCCCA 60.608 57.895 0.00 0.00 0.00 4.37
950 960 0.975556 GGCGAAAAACCCCATCCCAT 60.976 55.000 0.00 0.00 0.00 4.00
951 961 0.459899 GCGAAAAACCCCATCCCATC 59.540 55.000 0.00 0.00 0.00 3.51
952 962 1.959989 GCGAAAAACCCCATCCCATCT 60.960 52.381 0.00 0.00 0.00 2.90
953 963 2.024414 CGAAAAACCCCATCCCATCTC 58.976 52.381 0.00 0.00 0.00 2.75
954 964 2.388735 GAAAAACCCCATCCCATCTCC 58.611 52.381 0.00 0.00 0.00 3.71
955 965 0.258774 AAAACCCCATCCCATCTCCG 59.741 55.000 0.00 0.00 0.00 4.63
956 966 1.645402 AAACCCCATCCCATCTCCGG 61.645 60.000 0.00 0.00 0.00 5.14
959 969 2.111878 CCATCCCATCTCCGGTGC 59.888 66.667 0.00 0.00 0.00 5.01
962 972 2.446848 ATCCCATCTCCGGTGCCAG 61.447 63.158 0.00 0.00 0.00 4.85
1022 1035 0.839277 AGCCACCGGATGATGATGAA 59.161 50.000 9.46 0.00 0.00 2.57
1042 1055 4.760047 CGGTGAAGGTGGAGGGCG 62.760 72.222 0.00 0.00 0.00 6.13
1043 1056 3.319198 GGTGAAGGTGGAGGGCGA 61.319 66.667 0.00 0.00 0.00 5.54
1044 1057 2.670148 GGTGAAGGTGGAGGGCGAT 61.670 63.158 0.00 0.00 0.00 4.58
1045 1058 1.450312 GTGAAGGTGGAGGGCGATG 60.450 63.158 0.00 0.00 0.00 3.84
1047 1060 3.406595 GAAGGTGGAGGGCGATGGG 62.407 68.421 0.00 0.00 0.00 4.00
1137 1171 2.007049 GCCAAGACCTACGACATGGTG 61.007 57.143 0.00 0.00 36.59 4.17
1249 1283 1.352156 GCCGAGGTACTTCAAGCACG 61.352 60.000 10.92 0.00 41.55 5.34
1308 1356 6.657541 CCTATGTAAGTATCAGACCTCTCCTC 59.342 46.154 0.00 0.00 0.00 3.71
1321 1369 0.952497 TCTCCTCGCTGCTTTGCTTG 60.952 55.000 0.00 0.00 0.00 4.01
1323 1371 2.126580 CTCGCTGCTTTGCTTGGC 60.127 61.111 0.00 0.00 0.00 4.52
1324 1372 3.621892 CTCGCTGCTTTGCTTGGCC 62.622 63.158 0.00 0.00 0.00 5.36
1326 1374 3.308705 GCTGCTTTGCTTGGCCCT 61.309 61.111 0.00 0.00 0.00 5.19
1327 1375 2.875804 GCTGCTTTGCTTGGCCCTT 61.876 57.895 0.00 0.00 0.00 3.95
1329 1377 0.601841 CTGCTTTGCTTGGCCCTTTG 60.602 55.000 0.00 0.00 0.00 2.77
1332 1380 0.881600 CTTTGCTTGGCCCTTTGTGC 60.882 55.000 0.00 0.00 0.00 4.57
1341 1389 0.321564 GCCCTTTGTGCCCCAAAATC 60.322 55.000 1.02 0.00 42.31 2.17
1353 1401 3.694734 CCCCAAAATCGATTCGTTGATG 58.305 45.455 19.49 11.99 0.00 3.07
1354 1402 3.108144 CCCAAAATCGATTCGTTGATGC 58.892 45.455 19.49 0.00 0.00 3.91
1355 1403 3.108144 CCAAAATCGATTCGTTGATGCC 58.892 45.455 19.49 0.00 0.00 4.40
1358 1421 4.637483 AAATCGATTCGTTGATGCCAAT 57.363 36.364 11.83 0.00 34.39 3.16
1360 1423 3.403613 TCGATTCGTTGATGCCAATTG 57.596 42.857 5.89 0.00 34.39 2.32
1387 1450 3.055094 GGTTAGGAATGAGTGGAGCTTGA 60.055 47.826 0.00 0.00 0.00 3.02
1388 1451 4.384647 GGTTAGGAATGAGTGGAGCTTGAT 60.385 45.833 0.00 0.00 0.00 2.57
1389 1452 3.278668 AGGAATGAGTGGAGCTTGATG 57.721 47.619 0.00 0.00 0.00 3.07
1445 1513 6.730507 ACCCTGGGATTACTGAAATTTTGATT 59.269 34.615 22.23 0.00 0.00 2.57
1446 1514 7.093333 ACCCTGGGATTACTGAAATTTTGATTC 60.093 37.037 22.23 0.00 0.00 2.52
1452 1520 9.525409 GGATTACTGAAATTTTGATTCATCCAG 57.475 33.333 0.00 0.00 36.30 3.86
1471 1539 1.400494 AGTTTTGCCTCGTGTTCACAC 59.600 47.619 0.00 0.00 43.15 3.82
1472 1540 1.131504 GTTTTGCCTCGTGTTCACACA 59.868 47.619 10.61 0.00 46.75 3.72
1473 1541 1.013596 TTTGCCTCGTGTTCACACAG 58.986 50.000 10.61 6.70 46.75 3.66
1474 1542 0.107897 TTGCCTCGTGTTCACACAGT 60.108 50.000 10.61 0.00 46.75 3.55
1476 1544 1.222115 GCCTCGTGTTCACACAGTCC 61.222 60.000 10.61 0.00 46.75 3.85
1477 1545 0.389391 CCTCGTGTTCACACAGTCCT 59.611 55.000 10.61 0.00 46.75 3.85
1478 1546 1.491670 CTCGTGTTCACACAGTCCTG 58.508 55.000 10.61 0.00 46.75 3.86
1479 1547 1.067060 CTCGTGTTCACACAGTCCTGA 59.933 52.381 10.61 0.00 46.75 3.86
1480 1548 1.202371 TCGTGTTCACACAGTCCTGAC 60.202 52.381 10.61 0.00 46.75 3.51
1481 1549 1.209128 GTGTTCACACAGTCCTGACG 58.791 55.000 5.16 0.00 45.75 4.35
1482 1550 1.107945 TGTTCACACAGTCCTGACGA 58.892 50.000 0.40 0.00 36.20 4.20
1493 1561 2.278206 CTGACGACTCCGATGCCG 60.278 66.667 0.00 0.00 39.50 5.69
1519 1587 1.946768 TGTTGGCTGTAGTTCACAAGC 59.053 47.619 0.00 0.00 36.48 4.01
1544 1612 1.762957 GCAGGGGAACAGCTACAGATA 59.237 52.381 0.00 0.00 0.00 1.98
1578 1646 3.669939 AATTAGGGGGTGATTGACAGG 57.330 47.619 0.00 0.00 0.00 4.00
1579 1647 2.352561 TTAGGGGGTGATTGACAGGA 57.647 50.000 0.00 0.00 0.00 3.86
1580 1648 1.580059 TAGGGGGTGATTGACAGGAC 58.420 55.000 0.00 0.00 0.00 3.85
1581 1649 0.475632 AGGGGGTGATTGACAGGACA 60.476 55.000 0.00 0.00 0.00 4.02
1582 1650 0.625849 GGGGGTGATTGACAGGACAT 59.374 55.000 0.00 0.00 0.00 3.06
1588 1656 3.181465 GGTGATTGACAGGACATCCGTAT 60.181 47.826 0.00 0.00 42.08 3.06
1589 1657 4.038763 GGTGATTGACAGGACATCCGTATA 59.961 45.833 0.00 0.00 42.08 1.47
1616 1685 0.607489 GAGGTCACAGTGGCATTGCT 60.607 55.000 10.18 0.00 0.00 3.91
1634 1703 3.373565 GCGGCTTGGGGACTTTGG 61.374 66.667 0.00 0.00 0.00 3.28
1656 1725 0.251209 GGGGTGAAAAGGAGGTCCAC 60.251 60.000 0.00 0.00 38.89 4.02
1668 1751 1.604278 GAGGTCCACTGCAGTTCAAAC 59.396 52.381 18.94 12.38 0.00 2.93
1672 1755 3.489229 GGTCCACTGCAGTTCAAACTTTC 60.489 47.826 18.94 0.52 37.08 2.62
1676 1759 2.423538 ACTGCAGTTCAAACTTTCGCTT 59.576 40.909 15.25 0.00 37.08 4.68
1686 1769 6.325919 TCAAACTTTCGCTTCCATTAACAT 57.674 33.333 0.00 0.00 0.00 2.71
1697 1780 6.478588 GCTTCCATTAACATCAAAGTACTCG 58.521 40.000 0.00 0.00 0.00 4.18
1718 1812 7.516452 ACTCGTATAGACAAATACTCCCTACT 58.484 38.462 0.00 0.00 31.38 2.57
1722 1816 9.060347 CGTATAGACAAATACTCCCTACTTACA 57.940 37.037 0.00 0.00 31.38 2.41
1729 1823 6.936968 AATACTCCCTACTTACATCCATCC 57.063 41.667 0.00 0.00 0.00 3.51
1733 1827 5.839606 ACTCCCTACTTACATCCATCCTTAC 59.160 44.000 0.00 0.00 0.00 2.34
1734 1828 5.152934 TCCCTACTTACATCCATCCTTACC 58.847 45.833 0.00 0.00 0.00 2.85
1775 1869 7.500141 TCACTCAAGTTATGCTGCAAGATATA 58.500 34.615 6.36 0.00 34.07 0.86
1782 1876 8.783833 AGTTATGCTGCAAGATATAACATAGG 57.216 34.615 19.41 0.00 42.70 2.57
1786 1880 5.991606 TGCTGCAAGATATAACATAGGTGTC 59.008 40.000 0.00 0.00 34.12 3.67
1799 1893 4.716003 GTGTCCACCTAAGTGCCC 57.284 61.111 0.00 0.00 43.09 5.36
1814 1908 4.388577 AGTGCCCAAGAAGAAATAACCT 57.611 40.909 0.00 0.00 0.00 3.50
1815 1909 4.082125 AGTGCCCAAGAAGAAATAACCTG 58.918 43.478 0.00 0.00 0.00 4.00
1823 1917 6.543831 CCAAGAAGAAATAACCTGTAGGATGG 59.456 42.308 4.64 0.00 38.94 3.51
1839 1933 2.548067 GGATGGTAGCCGATACTTGGTG 60.548 54.545 0.00 0.00 34.56 4.17
1907 2001 3.358111 TCCTCGAATTATGGCAACCAA 57.642 42.857 0.00 0.00 36.95 3.67
1912 2006 5.291614 CCTCGAATTATGGCAACCAAAATTG 59.708 40.000 0.00 0.00 36.95 2.32
1913 2007 5.788450 TCGAATTATGGCAACCAAAATTGT 58.212 33.333 0.00 0.00 36.95 2.71
1914 2008 6.925211 TCGAATTATGGCAACCAAAATTGTA 58.075 32.000 0.00 0.00 36.95 2.41
1915 2009 7.378966 TCGAATTATGGCAACCAAAATTGTAA 58.621 30.769 0.00 0.00 36.95 2.41
1916 2010 7.543868 TCGAATTATGGCAACCAAAATTGTAAG 59.456 33.333 0.00 0.00 36.95 2.34
1917 2011 7.330700 CGAATTATGGCAACCAAAATTGTAAGT 59.669 33.333 0.00 0.00 36.95 2.24
1918 2012 8.916628 AATTATGGCAACCAAAATTGTAAGTT 57.083 26.923 0.00 0.00 36.95 2.66
1919 2013 7.721286 TTATGGCAACCAAAATTGTAAGTTG 57.279 32.000 0.00 6.41 40.55 3.16
1920 2014 5.091261 TGGCAACCAAAATTGTAAGTTGT 57.909 34.783 10.74 0.00 39.92 3.32
1921 2015 4.872691 TGGCAACCAAAATTGTAAGTTGTG 59.127 37.500 10.74 0.00 39.92 3.33
1922 2016 5.112686 GGCAACCAAAATTGTAAGTTGTGA 58.887 37.500 10.74 0.00 39.92 3.58
1923 2017 5.234116 GGCAACCAAAATTGTAAGTTGTGAG 59.766 40.000 10.74 0.00 39.92 3.51
1924 2018 5.810074 GCAACCAAAATTGTAAGTTGTGAGT 59.190 36.000 10.74 0.00 39.92 3.41
1925 2019 6.975772 GCAACCAAAATTGTAAGTTGTGAGTA 59.024 34.615 10.74 0.00 39.92 2.59
1926 2020 7.489757 GCAACCAAAATTGTAAGTTGTGAGTAA 59.510 33.333 10.74 0.00 39.92 2.24
1927 2021 9.360093 CAACCAAAATTGTAAGTTGTGAGTAAA 57.640 29.630 3.53 0.00 34.51 2.01
1949 2043 6.959639 AAATTTTCAAGCCTACAGAGTCAA 57.040 33.333 0.00 0.00 0.00 3.18
1968 2062 9.471702 AGAGTCAATTGATATCAACTTGGAATT 57.528 29.630 20.19 6.36 38.86 2.17
1978 2072 5.295431 TCAACTTGGAATTTACGAGCATG 57.705 39.130 0.00 0.00 0.00 4.06
1985 2079 7.283127 ACTTGGAATTTACGAGCATGTGATAAT 59.717 33.333 0.00 0.00 0.00 1.28
1989 2083 8.012241 GGAATTTACGAGCATGTGATAATCTTC 58.988 37.037 0.00 0.00 0.00 2.87
2015 2111 1.901650 GCTGGTAGTTCGTGTGCTGC 61.902 60.000 0.00 0.00 0.00 5.25
2029 2125 4.682787 GTGTGCTGCTTTTCTTTTTAGGT 58.317 39.130 0.00 0.00 0.00 3.08
2038 2134 6.603997 TGCTTTTCTTTTTAGGTAGTGGTTCA 59.396 34.615 0.00 0.00 0.00 3.18
2077 2173 2.233431 ACCAAAGTTGCAAGTGCTTGAA 59.767 40.909 16.79 2.15 42.93 2.69
2133 2229 7.117523 GTGCAATTTGGAATTTACAAGCACATA 59.882 33.333 22.61 0.00 42.33 2.29
2163 2264 7.651027 ATTGAAAGATAAAGAAGGTGATGGG 57.349 36.000 0.00 0.00 0.00 4.00
2171 2272 1.774254 AGAAGGTGATGGGTGTGTTCA 59.226 47.619 0.00 0.00 0.00 3.18
2175 2276 1.880027 GGTGATGGGTGTGTTCAGAAC 59.120 52.381 6.32 6.32 0.00 3.01
2178 2279 3.003689 GTGATGGGTGTGTTCAGAACTTG 59.996 47.826 14.51 0.00 0.00 3.16
2179 2280 3.118075 TGATGGGTGTGTTCAGAACTTGA 60.118 43.478 14.51 0.00 0.00 3.02
2197 2298 8.699130 AGAACTTGAGAAGATGGACAAAATTTT 58.301 29.630 0.00 0.00 0.00 1.82
2207 2308 7.154656 AGATGGACAAAATTTTAAGCCTTGAC 58.845 34.615 2.44 0.00 0.00 3.18
2223 2410 4.060205 CCTTGACATTTTGGCCAAAAGAG 58.940 43.478 38.50 33.88 42.72 2.85
2249 2436 7.201741 GCAGAAAGAGTAAAAGAGGAAGTTTGT 60.202 37.037 0.00 0.00 0.00 2.83
2266 2462 7.871463 GGAAGTTTGTTATACTACTGTCTGTGT 59.129 37.037 0.00 0.00 0.00 3.72
2276 2472 3.131709 ACTGTCTGTGTTAGCATTGCT 57.868 42.857 16.63 16.63 43.41 3.91
2291 2487 2.768253 TTGCTGATAGTGTGGGACTG 57.232 50.000 0.00 0.00 35.96 3.51
2292 2488 1.937191 TGCTGATAGTGTGGGACTGA 58.063 50.000 0.00 0.00 35.96 3.41
2296 2492 0.466124 GATAGTGTGGGACTGAGGGC 59.534 60.000 0.00 0.00 35.96 5.19
2337 2533 2.557924 TCTTACCGTAGAAACTTGCGGA 59.442 45.455 9.44 0.00 46.33 5.54
2408 2623 7.878127 AGAACCTTCAGATTTTACGAGATTTGA 59.122 33.333 0.00 0.00 0.00 2.69
2416 2631 8.986847 CAGATTTTACGAGATTTGAGCTATGAT 58.013 33.333 0.00 0.00 0.00 2.45
2423 2638 8.316640 ACGAGATTTGAGCTATGATTTAATCC 57.683 34.615 2.22 0.00 0.00 3.01
2437 2652 3.337694 TTAATCCGTGGGTGGTAGTTG 57.662 47.619 0.00 0.00 0.00 3.16
2452 2667 8.048514 GGGTGGTAGTTGTATTGACCTTATAAA 58.951 37.037 0.00 0.00 32.87 1.40
2469 2684 7.137426 CCTTATAAATCTTTGAGAGCATGTGC 58.863 38.462 0.00 0.00 42.49 4.57
2491 2707 2.639327 GCCGCCAACTGGATGCTTT 61.639 57.895 0.00 0.00 37.39 3.51
2492 2708 1.508088 CCGCCAACTGGATGCTTTC 59.492 57.895 0.00 0.00 37.39 2.62
2493 2709 1.243342 CCGCCAACTGGATGCTTTCA 61.243 55.000 0.00 0.00 37.39 2.69
2494 2710 0.813184 CGCCAACTGGATGCTTTCAT 59.187 50.000 0.00 0.00 37.39 2.57
2556 2811 6.587273 AGTTAGGCTATCACCTGATCTTTTC 58.413 40.000 5.46 0.00 41.34 2.29
2573 2828 9.003658 TGATCTTTTCAGTAAAATCTTCCAGTC 57.996 33.333 0.00 0.00 34.18 3.51
2576 2831 7.713507 TCTTTTCAGTAAAATCTTCCAGTCGAA 59.286 33.333 0.00 0.00 34.18 3.71
2610 2865 6.097554 TGTTTGCCTTGAGTAAAATCTTCCAA 59.902 34.615 0.00 0.00 31.40 3.53
2613 2868 6.924111 TGCCTTGAGTAAAATCTTCCAATTC 58.076 36.000 0.00 0.00 0.00 2.17
2614 2869 6.721208 TGCCTTGAGTAAAATCTTCCAATTCT 59.279 34.615 0.00 0.00 0.00 2.40
2615 2870 7.888021 TGCCTTGAGTAAAATCTTCCAATTCTA 59.112 33.333 0.00 0.00 0.00 2.10
2616 2871 8.401709 GCCTTGAGTAAAATCTTCCAATTCTAG 58.598 37.037 0.00 0.00 0.00 2.43
2617 2872 9.454859 CCTTGAGTAAAATCTTCCAATTCTAGT 57.545 33.333 0.00 0.00 0.00 2.57
2622 2877 9.397280 AGTAAAATCTTCCAATTCTAGTTAGGC 57.603 33.333 0.00 0.00 0.00 3.93
2626 2881 9.785982 AAATCTTCCAATTCTAGTTAGGCTATC 57.214 33.333 0.00 0.00 0.00 2.08
2627 2882 7.914427 TCTTCCAATTCTAGTTAGGCTATCA 57.086 36.000 5.46 0.00 0.00 2.15
2628 2883 7.727181 TCTTCCAATTCTAGTTAGGCTATCAC 58.273 38.462 5.46 0.00 0.00 3.06
2629 2884 6.420913 TCCAATTCTAGTTAGGCTATCACC 57.579 41.667 5.46 0.00 0.00 4.02
2630 2885 6.143915 TCCAATTCTAGTTAGGCTATCACCT 58.856 40.000 5.46 0.00 44.31 4.00
2631 2886 6.042093 TCCAATTCTAGTTAGGCTATCACCTG 59.958 42.308 5.46 0.00 41.34 4.00
2632 2887 6.042093 CCAATTCTAGTTAGGCTATCACCTGA 59.958 42.308 5.46 0.00 41.34 3.86
2633 2888 7.256475 CCAATTCTAGTTAGGCTATCACCTGAT 60.256 40.741 5.46 0.00 41.34 2.90
2634 2889 6.902771 TTCTAGTTAGGCTATCACCTGATC 57.097 41.667 5.46 0.00 41.34 2.92
2635 2890 6.207509 TCTAGTTAGGCTATCACCTGATCT 57.792 41.667 5.46 0.00 41.34 2.75
2636 2891 6.615617 TCTAGTTAGGCTATCACCTGATCTT 58.384 40.000 5.46 0.00 41.34 2.40
2639 2894 6.587273 AGTTAGGCTATCACCTGATCTTTTC 58.413 40.000 5.46 0.00 41.34 2.29
2656 2911 9.003658 TGATCTTTTCAGTAAAATCTTCCAGTC 57.996 33.333 0.00 0.00 34.18 3.51
2674 2929 5.088739 CCAGTCGATACTTCATTTGTTTGC 58.911 41.667 0.00 0.00 31.97 3.68
2688 2943 6.928492 TCATTTGTTTGCCTTGAGTAAAATCC 59.072 34.615 0.00 0.00 31.40 3.01
2693 2948 4.380843 TGCCTTGAGTAAAATCCTCCAA 57.619 40.909 0.00 0.00 0.00 3.53
2709 2964 9.880157 AAATCCTCCAATTGATACTTCATTTTG 57.120 29.630 7.12 0.00 0.00 2.44
2711 2966 8.055279 TCCTCCAATTGATACTTCATTTTGTC 57.945 34.615 7.12 0.00 0.00 3.18
2712 2967 7.890127 TCCTCCAATTGATACTTCATTTTGTCT 59.110 33.333 7.12 0.00 0.00 3.41
2713 2968 8.526147 CCTCCAATTGATACTTCATTTTGTCTT 58.474 33.333 7.12 0.00 0.00 3.01
2714 2969 9.350357 CTCCAATTGATACTTCATTTTGTCTTG 57.650 33.333 7.12 0.00 0.00 3.02
2715 2970 9.076781 TCCAATTGATACTTCATTTTGTCTTGA 57.923 29.630 7.12 0.00 0.00 3.02
2716 2971 9.350357 CCAATTGATACTTCATTTTGTCTTGAG 57.650 33.333 7.12 0.00 0.00 3.02
2717 2972 9.903682 CAATTGATACTTCATTTTGTCTTGAGT 57.096 29.630 0.00 0.00 0.00 3.41
2721 2976 8.721478 TGATACTTCATTTTGTCTTGAGTAAGC 58.279 33.333 0.00 0.00 33.82 3.09
2722 2977 8.854614 ATACTTCATTTTGTCTTGAGTAAGCT 57.145 30.769 0.00 0.00 33.82 3.74
2723 2978 7.195839 ACTTCATTTTGTCTTGAGTAAGCTC 57.804 36.000 0.00 0.00 41.97 4.09
2724 2979 6.205658 ACTTCATTTTGTCTTGAGTAAGCTCC 59.794 38.462 0.00 0.00 40.95 4.70
2725 2980 5.003804 TCATTTTGTCTTGAGTAAGCTCCC 58.996 41.667 0.00 0.00 40.95 4.30
2726 2981 4.431416 TTTTGTCTTGAGTAAGCTCCCA 57.569 40.909 0.00 0.00 40.95 4.37
2727 2982 3.685139 TTGTCTTGAGTAAGCTCCCAG 57.315 47.619 0.00 0.00 40.95 4.45
2728 2983 2.609747 TGTCTTGAGTAAGCTCCCAGT 58.390 47.619 0.00 0.00 40.95 4.00
2729 2984 2.972713 TGTCTTGAGTAAGCTCCCAGTT 59.027 45.455 0.00 0.00 40.95 3.16
2730 2985 3.006967 TGTCTTGAGTAAGCTCCCAGTTC 59.993 47.826 0.00 0.00 40.95 3.01
2731 2986 3.006967 GTCTTGAGTAAGCTCCCAGTTCA 59.993 47.826 0.00 0.00 40.95 3.18
2732 2987 3.840666 TCTTGAGTAAGCTCCCAGTTCAT 59.159 43.478 0.00 0.00 40.95 2.57
2733 2988 5.023452 TCTTGAGTAAGCTCCCAGTTCATA 58.977 41.667 0.00 0.00 40.95 2.15
2734 2989 4.737855 TGAGTAAGCTCCCAGTTCATAC 57.262 45.455 0.00 0.00 40.95 2.39
2735 2990 4.093743 TGAGTAAGCTCCCAGTTCATACA 58.906 43.478 0.00 0.00 40.95 2.29
2736 2991 4.530553 TGAGTAAGCTCCCAGTTCATACAA 59.469 41.667 0.00 0.00 40.95 2.41
2737 2992 5.189736 TGAGTAAGCTCCCAGTTCATACAAT 59.810 40.000 0.00 0.00 40.95 2.71
2738 2993 6.382859 TGAGTAAGCTCCCAGTTCATACAATA 59.617 38.462 0.00 0.00 40.95 1.90
2739 2994 7.071196 TGAGTAAGCTCCCAGTTCATACAATAT 59.929 37.037 0.00 0.00 40.95 1.28
2740 2995 7.806180 AGTAAGCTCCCAGTTCATACAATATT 58.194 34.615 0.00 0.00 0.00 1.28
2741 2996 8.934697 AGTAAGCTCCCAGTTCATACAATATTA 58.065 33.333 0.00 0.00 0.00 0.98
2742 2997 9.555727 GTAAGCTCCCAGTTCATACAATATTAA 57.444 33.333 0.00 0.00 0.00 1.40
2744 2999 8.682936 AGCTCCCAGTTCATACAATATTAAAG 57.317 34.615 0.00 0.00 0.00 1.85
2745 3000 7.721399 AGCTCCCAGTTCATACAATATTAAAGG 59.279 37.037 0.00 0.00 0.00 3.11
2746 3001 7.719633 GCTCCCAGTTCATACAATATTAAAGGA 59.280 37.037 0.00 0.00 0.00 3.36
2747 3002 9.799106 CTCCCAGTTCATACAATATTAAAGGAT 57.201 33.333 0.00 0.00 0.00 3.24
2748 3003 9.573166 TCCCAGTTCATACAATATTAAAGGATG 57.427 33.333 0.00 0.00 0.00 3.51
2749 3004 9.573166 CCCAGTTCATACAATATTAAAGGATGA 57.427 33.333 0.00 0.00 0.00 2.92
2764 3019 8.798859 TTAAAGGATGAAGATGAAGAGGAAAG 57.201 34.615 0.00 0.00 0.00 2.62
2765 3020 6.385766 AAGGATGAAGATGAAGAGGAAAGT 57.614 37.500 0.00 0.00 0.00 2.66
2766 3021 6.385766 AGGATGAAGATGAAGAGGAAAGTT 57.614 37.500 0.00 0.00 0.00 2.66
2767 3022 6.179040 AGGATGAAGATGAAGAGGAAAGTTG 58.821 40.000 0.00 0.00 0.00 3.16
2768 3023 6.013032 AGGATGAAGATGAAGAGGAAAGTTGA 60.013 38.462 0.00 0.00 0.00 3.18
2769 3024 6.093357 GGATGAAGATGAAGAGGAAAGTTGAC 59.907 42.308 0.00 0.00 0.00 3.18
2770 3025 5.928976 TGAAGATGAAGAGGAAAGTTGACA 58.071 37.500 0.00 0.00 0.00 3.58
2771 3026 6.356556 TGAAGATGAAGAGGAAAGTTGACAA 58.643 36.000 0.00 0.00 0.00 3.18
2772 3027 6.828273 TGAAGATGAAGAGGAAAGTTGACAAA 59.172 34.615 0.00 0.00 0.00 2.83
2777 3032 9.617975 GATGAAGAGGAAAGTTGACAAATAAAG 57.382 33.333 0.00 0.00 0.00 1.85
2799 3054 7.872113 AAGTCTTCCAATTGATACTCCATTC 57.128 36.000 7.12 0.00 0.00 2.67
2831 3086 8.486210 TGAGTAAGCTTCCAGTTCATACAATAT 58.514 33.333 0.00 0.00 0.00 1.28
2923 3178 9.739276 AATGTATCAAGTGAGTAAAATCTTCCA 57.261 29.630 0.00 0.00 0.00 3.53
3000 3260 7.830099 AGATGAAGAGGAAAGTTGACAAATT 57.170 32.000 0.00 0.00 0.00 1.82
3094 3354 9.732130 AAATTAGATATTCTTACAGGCTCATCC 57.268 33.333 0.00 0.00 0.00 3.51
3104 3364 0.980231 AGGCTCATCCTCTCCACACC 60.980 60.000 0.00 0.00 43.20 4.16
3113 3397 1.272985 CCTCTCCACACCCTCTCTCTT 60.273 57.143 0.00 0.00 0.00 2.85
3118 3402 2.777692 TCCACACCCTCTCTCTTTTTGT 59.222 45.455 0.00 0.00 0.00 2.83
3119 3403 3.202151 TCCACACCCTCTCTCTTTTTGTT 59.798 43.478 0.00 0.00 0.00 2.83
3163 3447 6.991938 TCTGAATGGTTAATTTTCTGTTGGG 58.008 36.000 0.00 0.00 0.00 4.12
3201 3485 9.974980 TTTGCCTTATTTAATTATCCGATTTCC 57.025 29.630 0.00 0.00 0.00 3.13
3217 3501 4.331443 CGATTTCCGACATGGTTGTTATCA 59.669 41.667 0.00 0.00 41.76 2.15
3392 3676 2.557452 GGTGGGGAACTTTGGACATGAT 60.557 50.000 0.00 0.00 0.00 2.45
3416 3700 9.334947 GATGTGGAGATAGATCATTTGAAAAGA 57.665 33.333 0.00 0.00 0.00 2.52
3421 3705 9.044150 GGAGATAGATCATTTGAAAAGAGACAG 57.956 37.037 0.00 0.00 0.00 3.51
3566 3850 2.397252 GCGCGAGTCATGCAGAAC 59.603 61.111 12.10 0.00 0.00 3.01
3584 3868 3.756082 AACCCCATGTTCATACACCAT 57.244 42.857 0.00 0.00 37.03 3.55
3588 3872 2.620115 CCCATGTTCATACACCATCTGC 59.380 50.000 0.00 0.00 37.03 4.26
3606 3890 0.104671 GCTCTCCCAGAGTGAGATGC 59.895 60.000 2.57 0.00 44.12 3.91
3935 4219 2.045536 GAGGAGGCCAGCAACCTG 60.046 66.667 5.01 0.00 37.77 4.00
3993 4277 1.819288 TGGACTAGCTCGACTCAAAGG 59.181 52.381 0.00 0.00 0.00 3.11
3996 4280 1.469308 ACTAGCTCGACTCAAAGGACG 59.531 52.381 0.00 0.00 0.00 4.79
4029 4313 6.092670 CGGACAATAATCCATCGCATTCTATT 59.907 38.462 0.00 0.00 38.87 1.73
4159 4447 7.341805 GTGATGATGCCACCCTATTATCTTAT 58.658 38.462 0.00 0.00 0.00 1.73
4165 4453 5.305902 TGCCACCCTATTATCTTATTGTCGA 59.694 40.000 0.00 0.00 0.00 4.20
4220 4508 2.764269 TCTGGGAGGATTCTAGTTGGG 58.236 52.381 0.00 0.00 0.00 4.12
4223 4511 2.576191 TGGGAGGATTCTAGTTGGGTTG 59.424 50.000 0.00 0.00 0.00 3.77
4224 4512 2.644676 GGAGGATTCTAGTTGGGTTGC 58.355 52.381 0.00 0.00 0.00 4.17
4227 4515 3.690460 AGGATTCTAGTTGGGTTGCTTG 58.310 45.455 0.00 0.00 0.00 4.01
4228 4516 2.164422 GGATTCTAGTTGGGTTGCTTGC 59.836 50.000 0.00 0.00 0.00 4.01
4229 4517 1.616159 TTCTAGTTGGGTTGCTTGCC 58.384 50.000 0.00 0.00 0.00 4.52
4230 4518 0.476338 TCTAGTTGGGTTGCTTGCCA 59.524 50.000 0.00 0.00 0.00 4.92
4231 4519 0.598065 CTAGTTGGGTTGCTTGCCAC 59.402 55.000 0.00 0.00 0.00 5.01
4232 4520 0.184933 TAGTTGGGTTGCTTGCCACT 59.815 50.000 0.00 0.00 0.00 4.00
4233 4521 1.067916 GTTGGGTTGCTTGCCACTG 59.932 57.895 0.00 0.00 0.00 3.66
4234 4522 1.381056 TTGGGTTGCTTGCCACTGT 60.381 52.632 0.00 0.00 0.00 3.55
4235 4523 1.391157 TTGGGTTGCTTGCCACTGTC 61.391 55.000 0.00 0.00 0.00 3.51
4236 4524 1.529244 GGGTTGCTTGCCACTGTCT 60.529 57.895 0.00 0.00 0.00 3.41
4291 4611 8.018537 TGTATGCCTAGTTTTCTGATAGCTAA 57.981 34.615 0.00 0.00 0.00 3.09
4395 4773 6.074835 CGATGTACAGTAGTATCATGTTGTGC 60.075 42.308 0.33 0.00 31.84 4.57
4409 4787 5.123661 TCATGTTGTGCCTATGTGTAATGTG 59.876 40.000 0.00 0.00 0.00 3.21
4454 4835 2.930950 ACTGTGCTTGTTGCTTCCTTA 58.069 42.857 0.00 0.00 43.37 2.69
4510 4891 9.667107 TCACTAAGGAATTGGTATCTAAAGTTG 57.333 33.333 0.00 0.00 0.00 3.16
4528 4909 9.736023 CTAAAGTTGCTCACATTAAGAAAGTTT 57.264 29.630 0.00 0.00 38.15 2.66
4615 5001 6.640518 AGTTTATCACGGAGTATGTCACAAT 58.359 36.000 0.00 0.00 41.61 2.71
4621 5007 6.693466 TCACGGAGTATGTCACAATTTTCTA 58.307 36.000 0.00 0.00 41.61 2.10
4641 5027 7.750229 TTCTATTGTTTTCTCTCACATTGCT 57.250 32.000 0.00 0.00 0.00 3.91
4644 5030 9.283768 TCTATTGTTTTCTCTCACATTGCTTTA 57.716 29.630 0.00 0.00 0.00 1.85
4651 5037 5.702865 TCTCTCACATTGCTTTATTTGTGC 58.297 37.500 0.00 0.00 39.39 4.57
4652 5038 4.475028 TCTCACATTGCTTTATTTGTGCG 58.525 39.130 0.00 0.00 39.39 5.34
4764 5150 8.321353 AGCTTATACATTGCTTACCATATAGCA 58.679 33.333 0.00 0.00 45.06 3.49
4765 5151 8.607459 GCTTATACATTGCTTACCATATAGCAG 58.393 37.037 0.00 0.00 46.95 4.24
4766 5152 6.992063 ATACATTGCTTACCATATAGCAGC 57.008 37.500 0.00 0.00 46.95 5.25
4782 5168 8.657729 CATATAGCAGCTAATGAAGAGTTGATG 58.342 37.037 6.13 0.00 0.00 3.07
4788 5174 7.518052 GCAGCTAATGAAGAGTTGATGTATGTC 60.518 40.741 0.00 0.00 0.00 3.06
4810 5197 7.782049 TGTCCTCGTTGTTTATCTTCTGATAT 58.218 34.615 0.00 0.00 35.36 1.63
4811 5198 8.909923 TGTCCTCGTTGTTTATCTTCTGATATA 58.090 33.333 0.00 0.00 35.36 0.86
4864 5251 4.342378 AGCCAGTCGCCAGGTATATATATG 59.658 45.833 5.44 0.00 38.78 1.78
4865 5252 4.099573 GCCAGTCGCCAGGTATATATATGT 59.900 45.833 5.44 0.00 0.00 2.29
4866 5253 5.301045 GCCAGTCGCCAGGTATATATATGTA 59.699 44.000 5.44 0.00 0.00 2.29
4867 5254 6.515200 GCCAGTCGCCAGGTATATATATGTAG 60.515 46.154 5.44 0.00 0.00 2.74
4931 5318 1.342555 CAATGCTGCGTTGAACATGG 58.657 50.000 26.26 0.31 32.66 3.66
4933 5320 0.523072 ATGCTGCGTTGAACATGGTC 59.477 50.000 2.98 2.98 0.00 4.02
4955 5343 7.087639 GGTCTATCATAGAACAGATGCAGTAC 58.912 42.308 4.70 0.00 42.13 2.73
4962 5350 7.708322 TCATAGAACAGATGCAGTACAATCTTC 59.292 37.037 0.00 0.00 0.00 2.87
4974 5362 7.013178 TGCAGTACAATCTTCTTCAAAATGTGA 59.987 33.333 0.00 0.00 0.00 3.58
4975 5363 7.862372 GCAGTACAATCTTCTTCAAAATGTGAA 59.138 33.333 0.00 0.00 44.20 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.727392 CCACAGATAACGGGCCGGA 61.727 63.158 31.78 18.47 0.00 5.14
4 5 2.203015 CCACAGATAACGGGCCGG 60.203 66.667 31.78 13.71 0.00 6.13
5 6 1.520787 GACCACAGATAACGGGCCG 60.521 63.158 27.06 27.06 0.00 6.13
6 7 1.117150 TAGACCACAGATAACGGGCC 58.883 55.000 0.00 0.00 0.00 5.80
7 8 2.102588 ACATAGACCACAGATAACGGGC 59.897 50.000 0.00 0.00 0.00 6.13
8 9 4.119862 CAACATAGACCACAGATAACGGG 58.880 47.826 0.00 0.00 0.00 5.28
9 10 4.119862 CCAACATAGACCACAGATAACGG 58.880 47.826 0.00 0.00 0.00 4.44
10 11 3.555956 GCCAACATAGACCACAGATAACG 59.444 47.826 0.00 0.00 0.00 3.18
11 12 3.877508 GGCCAACATAGACCACAGATAAC 59.122 47.826 0.00 0.00 0.00 1.89
12 13 3.118038 GGGCCAACATAGACCACAGATAA 60.118 47.826 4.39 0.00 0.00 1.75
13 14 2.438021 GGGCCAACATAGACCACAGATA 59.562 50.000 4.39 0.00 0.00 1.98
14 15 1.212935 GGGCCAACATAGACCACAGAT 59.787 52.381 4.39 0.00 0.00 2.90
15 16 0.618458 GGGCCAACATAGACCACAGA 59.382 55.000 4.39 0.00 0.00 3.41
16 17 0.327924 TGGGCCAACATAGACCACAG 59.672 55.000 2.13 0.00 0.00 3.66
17 18 2.469162 TGGGCCAACATAGACCACA 58.531 52.632 2.13 0.00 0.00 4.17
18 19 2.868253 GTGGGCCAACATAGACCAC 58.132 57.895 8.40 0.00 43.98 4.16
19 20 1.136961 TGGTGGGCCAACATAGACCA 61.137 55.000 23.07 13.35 42.83 4.02
20 21 1.688811 TGGTGGGCCAACATAGACC 59.311 57.895 23.07 10.44 42.83 3.85
49 50 1.599797 GGATAAATGGGCCGGTCCG 60.600 63.158 22.68 3.60 34.94 4.79
50 51 1.599797 CGGATAAATGGGCCGGTCC 60.600 63.158 21.35 21.35 41.29 4.46
51 52 4.058797 CGGATAAATGGGCCGGTC 57.941 61.111 1.90 0.00 41.29 4.79
54 55 3.522354 AGACCACGGATAAATGGGCCG 62.522 57.143 0.00 0.00 46.27 6.13
55 56 0.182775 AGACCACGGATAAATGGGCC 59.817 55.000 0.00 0.00 46.27 5.80
56 57 2.922740 TAGACCACGGATAAATGGGC 57.077 50.000 0.00 0.00 45.33 5.36
57 58 4.351874 ACATAGACCACGGATAAATGGG 57.648 45.455 0.00 0.00 40.59 4.00
58 59 4.515191 CCAACATAGACCACGGATAAATGG 59.485 45.833 0.00 0.00 42.13 3.16
59 60 4.024048 GCCAACATAGACCACGGATAAATG 60.024 45.833 0.00 0.00 0.00 2.32
60 61 4.134563 GCCAACATAGACCACGGATAAAT 58.865 43.478 0.00 0.00 0.00 1.40
61 62 3.537580 GCCAACATAGACCACGGATAAA 58.462 45.455 0.00 0.00 0.00 1.40
62 63 2.158871 GGCCAACATAGACCACGGATAA 60.159 50.000 0.00 0.00 0.00 1.75
63 64 1.414919 GGCCAACATAGACCACGGATA 59.585 52.381 0.00 0.00 0.00 2.59
64 65 0.180406 GGCCAACATAGACCACGGAT 59.820 55.000 0.00 0.00 0.00 4.18
65 66 1.600107 GGCCAACATAGACCACGGA 59.400 57.895 0.00 0.00 0.00 4.69
66 67 1.451387 GGGCCAACATAGACCACGG 60.451 63.158 4.39 0.00 0.00 4.94
67 68 1.024579 GTGGGCCAACATAGACCACG 61.025 60.000 8.40 0.00 41.73 4.94
68 69 2.868253 GTGGGCCAACATAGACCAC 58.132 57.895 8.40 0.00 43.98 4.16
69 70 1.136961 TGGTGGGCCAACATAGACCA 61.137 55.000 23.07 13.35 42.83 4.02
70 71 1.688811 TGGTGGGCCAACATAGACC 59.311 57.895 23.07 10.44 42.83 3.85
91 92 4.564110 GAGGTACATGGGCCGGGC 62.564 72.222 22.00 22.00 0.00 6.13
92 93 3.873812 GGAGGTACATGGGCCGGG 61.874 72.222 2.18 0.00 0.00 5.73
93 94 3.873812 GGGAGGTACATGGGCCGG 61.874 72.222 0.00 0.00 0.00 6.13
94 95 3.873812 GGGGAGGTACATGGGCCG 61.874 72.222 0.00 0.00 0.00 6.13
95 96 3.873812 CGGGGAGGTACATGGGCC 61.874 72.222 0.00 0.00 0.00 5.80
96 97 3.873812 CCGGGGAGGTACATGGGC 61.874 72.222 0.00 0.00 34.51 5.36
123 124 4.104417 AGGACAGAGACGCGACGC 62.104 66.667 15.93 10.49 0.00 5.19
124 125 2.098680 GAGGACAGAGACGCGACG 59.901 66.667 15.93 0.00 0.00 5.12
125 126 1.022451 AGAGAGGACAGAGACGCGAC 61.022 60.000 15.93 6.86 0.00 5.19
126 127 1.021920 CAGAGAGGACAGAGACGCGA 61.022 60.000 15.93 0.00 0.00 5.87
127 128 1.021920 TCAGAGAGGACAGAGACGCG 61.022 60.000 3.53 3.53 0.00 6.01
128 129 1.333619 GATCAGAGAGGACAGAGACGC 59.666 57.143 0.00 0.00 0.00 5.19
129 130 1.597195 CGATCAGAGAGGACAGAGACG 59.403 57.143 0.00 0.00 0.00 4.18
130 131 1.946768 CCGATCAGAGAGGACAGAGAC 59.053 57.143 0.00 0.00 0.00 3.36
131 132 1.840635 TCCGATCAGAGAGGACAGAGA 59.159 52.381 0.00 0.00 0.00 3.10
132 133 2.158827 TCTCCGATCAGAGAGGACAGAG 60.159 54.545 4.45 0.00 37.98 3.35
133 134 1.840635 TCTCCGATCAGAGAGGACAGA 59.159 52.381 4.45 0.00 37.98 3.41
134 135 2.340210 TCTCCGATCAGAGAGGACAG 57.660 55.000 4.45 0.00 37.98 3.51
140 141 4.568804 GGGATTATCCTCTCCGATCAGAGA 60.569 50.000 11.40 8.37 42.44 3.10
141 142 3.699038 GGGATTATCCTCTCCGATCAGAG 59.301 52.174 11.40 0.00 39.89 3.35
142 143 3.564571 GGGGATTATCCTCTCCGATCAGA 60.565 52.174 11.40 0.00 33.02 3.27
143 144 2.763448 GGGGATTATCCTCTCCGATCAG 59.237 54.545 11.40 0.00 33.02 2.90
144 145 2.111792 TGGGGATTATCCTCTCCGATCA 59.888 50.000 12.87 0.00 38.07 2.92
145 146 2.498078 GTGGGGATTATCCTCTCCGATC 59.502 54.545 12.87 0.00 38.07 3.69
146 147 2.541466 GTGGGGATTATCCTCTCCGAT 58.459 52.381 12.87 0.00 38.07 4.18
147 148 1.822062 CGTGGGGATTATCCTCTCCGA 60.822 57.143 12.87 0.00 38.07 4.55
148 149 0.603569 CGTGGGGATTATCCTCTCCG 59.396 60.000 12.87 10.55 38.07 4.63
149 150 0.321996 GCGTGGGGATTATCCTCTCC 59.678 60.000 12.87 5.43 38.07 3.71
150 151 0.321996 GGCGTGGGGATTATCCTCTC 59.678 60.000 12.87 7.89 38.07 3.20
151 152 0.399949 TGGCGTGGGGATTATCCTCT 60.400 55.000 12.87 0.00 38.07 3.69
152 153 0.250338 GTGGCGTGGGGATTATCCTC 60.250 60.000 11.40 7.81 37.60 3.71
153 154 0.986019 TGTGGCGTGGGGATTATCCT 60.986 55.000 11.40 0.00 36.57 3.24
154 155 0.818040 GTGTGGCGTGGGGATTATCC 60.818 60.000 1.91 1.91 35.23 2.59
155 156 0.107410 TGTGTGGCGTGGGGATTATC 60.107 55.000 0.00 0.00 0.00 1.75
156 157 0.550914 ATGTGTGGCGTGGGGATTAT 59.449 50.000 0.00 0.00 0.00 1.28
157 158 0.393673 CATGTGTGGCGTGGGGATTA 60.394 55.000 0.00 0.00 0.00 1.75
158 159 1.678635 CATGTGTGGCGTGGGGATT 60.679 57.895 0.00 0.00 0.00 3.01
159 160 2.045045 CATGTGTGGCGTGGGGAT 60.045 61.111 0.00 0.00 0.00 3.85
160 161 3.545124 GACATGTGTGGCGTGGGGA 62.545 63.158 1.15 0.00 38.39 4.81
161 162 3.055719 GACATGTGTGGCGTGGGG 61.056 66.667 1.15 0.00 38.39 4.96
162 163 3.055719 GGACATGTGTGGCGTGGG 61.056 66.667 1.15 0.00 38.39 4.61
163 164 2.281414 TGGACATGTGTGGCGTGG 60.281 61.111 1.15 0.00 38.39 4.94
164 165 2.616330 GGTGGACATGTGTGGCGTG 61.616 63.158 1.15 0.00 39.90 5.34
165 166 2.281484 GGTGGACATGTGTGGCGT 60.281 61.111 1.15 0.00 32.55 5.68
166 167 3.422303 CGGTGGACATGTGTGGCG 61.422 66.667 1.15 0.00 32.55 5.69
167 168 3.737172 GCGGTGGACATGTGTGGC 61.737 66.667 1.15 0.00 0.00 5.01
168 169 1.577328 GAAGCGGTGGACATGTGTGG 61.577 60.000 1.15 0.00 0.00 4.17
169 170 1.577328 GGAAGCGGTGGACATGTGTG 61.577 60.000 1.15 0.00 0.00 3.82
170 171 1.302511 GGAAGCGGTGGACATGTGT 60.303 57.895 1.15 0.00 0.00 3.72
171 172 1.003355 AGGAAGCGGTGGACATGTG 60.003 57.895 1.15 0.00 0.00 3.21
172 173 1.296715 GAGGAAGCGGTGGACATGT 59.703 57.895 0.00 0.00 0.00 3.21
173 174 0.321564 TTGAGGAAGCGGTGGACATG 60.322 55.000 0.00 0.00 0.00 3.21
174 175 0.400213 TTTGAGGAAGCGGTGGACAT 59.600 50.000 0.00 0.00 0.00 3.06
175 176 0.181587 TTTTGAGGAAGCGGTGGACA 59.818 50.000 0.00 0.00 0.00 4.02
176 177 3.015516 TTTTGAGGAAGCGGTGGAC 57.984 52.632 0.00 0.00 0.00 4.02
714 715 3.423154 GGTTCTGGAAGCGGTGCG 61.423 66.667 0.00 0.00 0.00 5.34
715 716 1.578206 GAAGGTTCTGGAAGCGGTGC 61.578 60.000 6.84 0.00 43.06 5.01
716 717 0.955919 GGAAGGTTCTGGAAGCGGTG 60.956 60.000 6.84 0.00 43.06 4.94
717 718 1.375326 GGAAGGTTCTGGAAGCGGT 59.625 57.895 6.84 0.00 43.06 5.68
718 719 0.955919 GTGGAAGGTTCTGGAAGCGG 60.956 60.000 6.84 0.00 43.06 5.52
719 720 0.955919 GGTGGAAGGTTCTGGAAGCG 60.956 60.000 6.84 0.00 43.06 4.68
720 721 0.609406 GGGTGGAAGGTTCTGGAAGC 60.609 60.000 4.58 4.58 38.96 3.86
721 722 0.038310 GGGGTGGAAGGTTCTGGAAG 59.962 60.000 0.00 0.00 0.00 3.46
722 723 1.432023 GGGGGTGGAAGGTTCTGGAA 61.432 60.000 0.00 0.00 0.00 3.53
723 724 1.850755 GGGGGTGGAAGGTTCTGGA 60.851 63.158 0.00 0.00 0.00 3.86
724 725 2.763902 GGGGGTGGAAGGTTCTGG 59.236 66.667 0.00 0.00 0.00 3.86
738 739 2.999063 CTTGGCTTGGCTTGGGGG 60.999 66.667 0.00 0.00 0.00 5.40
739 740 3.698820 GCTTGGCTTGGCTTGGGG 61.699 66.667 0.00 0.00 0.00 4.96
740 741 3.698820 GGCTTGGCTTGGCTTGGG 61.699 66.667 0.00 0.00 0.00 4.12
741 742 2.444700 CTTGGCTTGGCTTGGCTTGG 62.445 60.000 5.64 0.00 0.00 3.61
742 743 1.005394 CTTGGCTTGGCTTGGCTTG 60.005 57.895 5.64 0.00 0.00 4.01
743 744 2.875804 GCTTGGCTTGGCTTGGCTT 61.876 57.895 5.64 0.00 0.00 4.35
744 745 3.308705 GCTTGGCTTGGCTTGGCT 61.309 61.111 5.64 0.00 0.00 4.75
745 746 4.383861 GGCTTGGCTTGGCTTGGC 62.384 66.667 0.00 0.00 0.00 4.52
746 747 2.444700 CTTGGCTTGGCTTGGCTTGG 62.445 60.000 5.64 0.00 0.00 3.61
747 748 1.005394 CTTGGCTTGGCTTGGCTTG 60.005 57.895 5.64 0.00 0.00 4.01
748 749 2.875804 GCTTGGCTTGGCTTGGCTT 61.876 57.895 5.64 0.00 0.00 4.35
749 750 3.308705 GCTTGGCTTGGCTTGGCT 61.309 61.111 5.64 0.00 0.00 4.75
750 751 4.383861 GGCTTGGCTTGGCTTGGC 62.384 66.667 0.00 0.00 0.00 4.52
751 752 2.444700 CTTGGCTTGGCTTGGCTTGG 62.445 60.000 5.64 0.00 0.00 3.61
752 753 1.005394 CTTGGCTTGGCTTGGCTTG 60.005 57.895 5.64 0.00 0.00 4.01
753 754 1.458209 ACTTGGCTTGGCTTGGCTT 60.458 52.632 5.64 0.00 0.00 4.35
754 755 2.199535 ACTTGGCTTGGCTTGGCT 59.800 55.556 5.64 0.00 0.00 4.75
755 756 2.341176 CACTTGGCTTGGCTTGGC 59.659 61.111 0.00 0.00 0.00 4.52
756 757 3.053828 CCACTTGGCTTGGCTTGG 58.946 61.111 0.00 0.00 0.00 3.61
778 779 1.140407 GACTTGTAGCCGTAGCAGCG 61.140 60.000 0.00 0.00 43.56 5.18
779 780 0.173708 AGACTTGTAGCCGTAGCAGC 59.826 55.000 0.00 0.00 43.56 5.25
780 781 1.746220 AGAGACTTGTAGCCGTAGCAG 59.254 52.381 0.00 0.00 43.56 4.24
781 782 1.743958 GAGAGACTTGTAGCCGTAGCA 59.256 52.381 0.00 0.00 43.56 3.49
782 783 1.065851 GGAGAGACTTGTAGCCGTAGC 59.934 57.143 0.00 0.00 40.32 3.58
783 784 2.614983 GAGGAGAGACTTGTAGCCGTAG 59.385 54.545 0.00 0.00 0.00 3.51
784 785 2.641305 GAGGAGAGACTTGTAGCCGTA 58.359 52.381 0.00 0.00 0.00 4.02
785 786 1.465794 GAGGAGAGACTTGTAGCCGT 58.534 55.000 0.00 0.00 0.00 5.68
786 787 0.741915 GGAGGAGAGACTTGTAGCCG 59.258 60.000 0.00 0.00 0.00 5.52
787 788 1.754226 CTGGAGGAGAGACTTGTAGCC 59.246 57.143 0.00 0.00 0.00 3.93
788 789 1.136110 GCTGGAGGAGAGACTTGTAGC 59.864 57.143 0.00 0.00 0.00 3.58
789 790 1.403679 CGCTGGAGGAGAGACTTGTAG 59.596 57.143 0.00 0.00 0.00 2.74
790 791 1.464734 CGCTGGAGGAGAGACTTGTA 58.535 55.000 0.00 0.00 0.00 2.41
791 792 1.882989 GCGCTGGAGGAGAGACTTGT 61.883 60.000 0.00 0.00 0.00 3.16
792 793 1.153667 GCGCTGGAGGAGAGACTTG 60.154 63.158 0.00 0.00 0.00 3.16
793 794 1.304879 AGCGCTGGAGGAGAGACTT 60.305 57.895 10.39 0.00 0.00 3.01
794 795 2.051518 CAGCGCTGGAGGAGAGACT 61.052 63.158 29.88 0.00 0.00 3.24
795 796 2.493973 CAGCGCTGGAGGAGAGAC 59.506 66.667 29.88 0.00 0.00 3.36
796 797 3.456365 GCAGCGCTGGAGGAGAGA 61.456 66.667 36.47 0.00 0.00 3.10
797 798 4.527583 GGCAGCGCTGGAGGAGAG 62.528 72.222 36.47 11.22 0.00 3.20
822 823 4.087892 AGGCACGCCTAGCACCAG 62.088 66.667 9.35 0.00 46.14 4.00
866 872 3.617166 AAAAGGGCGGGGGAATGGG 62.617 63.158 0.00 0.00 0.00 4.00
867 873 2.038813 AAAAGGGCGGGGGAATGG 59.961 61.111 0.00 0.00 0.00 3.16
868 874 1.604147 GACAAAAGGGCGGGGGAATG 61.604 60.000 0.00 0.00 0.00 2.67
869 875 1.304962 GACAAAAGGGCGGGGGAAT 60.305 57.895 0.00 0.00 0.00 3.01
870 876 2.116556 GACAAAAGGGCGGGGGAA 59.883 61.111 0.00 0.00 0.00 3.97
871 877 3.179339 TGACAAAAGGGCGGGGGA 61.179 61.111 0.00 0.00 0.00 4.81
944 954 2.366837 TGGCACCGGAGATGGGAT 60.367 61.111 9.46 0.00 0.00 3.85
945 955 3.083349 CTGGCACCGGAGATGGGA 61.083 66.667 9.46 0.00 0.00 4.37
946 956 2.599645 CTTCTGGCACCGGAGATGGG 62.600 65.000 9.46 0.00 32.36 4.00
947 957 1.153289 CTTCTGGCACCGGAGATGG 60.153 63.158 9.46 0.00 32.36 3.51
948 958 1.153289 CCTTCTGGCACCGGAGATG 60.153 63.158 9.46 2.34 32.36 2.90
949 959 3.313874 CCTTCTGGCACCGGAGAT 58.686 61.111 9.46 0.00 32.36 2.75
1022 1035 1.995626 CCCTCCACCTTCACCGGAT 60.996 63.158 9.46 0.00 0.00 4.18
1249 1283 0.603975 ACGAAGCTGGAGAAGTTGCC 60.604 55.000 0.00 0.00 0.00 4.52
1308 1356 4.729856 GGGCCAAGCAAAGCAGCG 62.730 66.667 4.39 0.00 40.15 5.18
1326 1374 2.352225 CGAATCGATTTTGGGGCACAAA 60.352 45.455 11.62 11.62 46.82 2.83
1327 1375 1.201181 CGAATCGATTTTGGGGCACAA 59.799 47.619 12.81 0.00 37.28 3.33
1329 1377 0.808755 ACGAATCGATTTTGGGGCAC 59.191 50.000 12.81 0.00 0.00 5.01
1332 1380 3.694734 CATCAACGAATCGATTTTGGGG 58.305 45.455 12.81 6.15 0.00 4.96
1333 1381 3.108144 GCATCAACGAATCGATTTTGGG 58.892 45.455 12.81 10.41 0.00 4.12
1336 1384 4.433186 TTGGCATCAACGAATCGATTTT 57.567 36.364 12.81 0.20 0.00 1.82
1341 1389 1.847999 GCAATTGGCATCAACGAATCG 59.152 47.619 7.72 0.00 43.97 3.34
1353 1401 1.555967 TCCTAACCCTTGCAATTGGC 58.444 50.000 13.55 0.15 45.13 4.52
1354 1402 3.768757 TCATTCCTAACCCTTGCAATTGG 59.231 43.478 7.72 12.36 0.00 3.16
1355 1403 4.463891 ACTCATTCCTAACCCTTGCAATTG 59.536 41.667 0.00 0.00 0.00 2.32
1358 1421 3.420893 CACTCATTCCTAACCCTTGCAA 58.579 45.455 0.00 0.00 0.00 4.08
1360 1423 2.026262 TCCACTCATTCCTAACCCTTGC 60.026 50.000 0.00 0.00 0.00 4.01
1387 1450 5.726793 ACTCCAGTACTTTGAGTAATCCCAT 59.273 40.000 18.78 0.00 37.58 4.00
1388 1451 5.091552 ACTCCAGTACTTTGAGTAATCCCA 58.908 41.667 18.78 0.00 37.58 4.37
1389 1452 5.678955 ACTCCAGTACTTTGAGTAATCCC 57.321 43.478 18.78 0.00 37.58 3.85
1445 1513 1.202758 ACACGAGGCAAAACTGGATGA 60.203 47.619 0.00 0.00 0.00 2.92
1446 1514 1.238439 ACACGAGGCAAAACTGGATG 58.762 50.000 0.00 0.00 0.00 3.51
1452 1520 1.822581 GTGTGAACACGAGGCAAAAC 58.177 50.000 0.00 0.00 37.10 2.43
1473 1541 1.226717 GCATCGGAGTCGTCAGGAC 60.227 63.158 0.00 0.00 46.45 3.85
1474 1542 2.415608 GGCATCGGAGTCGTCAGGA 61.416 63.158 0.00 0.00 37.69 3.86
1476 1544 2.278206 CGGCATCGGAGTCGTCAG 60.278 66.667 0.00 0.00 37.69 3.51
1477 1545 4.492160 GCGGCATCGGAGTCGTCA 62.492 66.667 0.00 0.00 37.69 4.35
1481 1549 3.665675 AACTGGCGGCATCGGAGTC 62.666 63.158 13.85 0.00 36.79 3.36
1482 1550 3.706373 AACTGGCGGCATCGGAGT 61.706 61.111 13.85 3.02 36.79 3.85
1486 1554 2.176546 CAACAACTGGCGGCATCG 59.823 61.111 13.85 4.01 39.81 3.84
1496 1564 3.275617 TGTGAACTACAGCCAACAACT 57.724 42.857 0.00 0.00 33.42 3.16
1519 1587 1.841302 TAGCTGTTCCCCTGCCACAG 61.841 60.000 0.00 0.00 40.86 3.66
1544 1612 7.073725 TCACCCCCTAATTAGCTTGATCTATTT 59.926 37.037 6.99 0.00 0.00 1.40
1578 1646 3.244112 CCTCCCAAACCTATACGGATGTC 60.244 52.174 0.00 0.00 36.31 3.06
1579 1647 2.704065 CCTCCCAAACCTATACGGATGT 59.296 50.000 0.00 0.00 36.31 3.06
1580 1648 2.704065 ACCTCCCAAACCTATACGGATG 59.296 50.000 0.00 0.00 36.31 3.51
1581 1649 2.970640 GACCTCCCAAACCTATACGGAT 59.029 50.000 0.00 0.00 36.31 4.18
1582 1650 2.292389 TGACCTCCCAAACCTATACGGA 60.292 50.000 0.00 0.00 36.31 4.69
1588 1656 1.697432 CACTGTGACCTCCCAAACCTA 59.303 52.381 0.32 0.00 0.00 3.08
1589 1657 0.474184 CACTGTGACCTCCCAAACCT 59.526 55.000 0.32 0.00 0.00 3.50
1616 1685 2.597217 CAAAGTCCCCAAGCCGCA 60.597 61.111 0.00 0.00 0.00 5.69
1641 1710 0.843309 TGCAGTGGACCTCCTTTTCA 59.157 50.000 0.00 0.00 36.82 2.69
1656 1725 2.763249 AGCGAAAGTTTGAACTGCAG 57.237 45.000 13.48 13.48 39.66 4.41
1668 1751 6.381801 ACTTTGATGTTAATGGAAGCGAAAG 58.618 36.000 0.00 0.00 0.00 2.62
1672 1755 6.422776 AGTACTTTGATGTTAATGGAAGCG 57.577 37.500 0.00 0.00 0.00 4.68
1676 1759 9.961265 CTATACGAGTACTTTGATGTTAATGGA 57.039 33.333 0.00 0.00 0.00 3.41
1706 1789 6.635021 AGGATGGATGTAAGTAGGGAGTATT 58.365 40.000 0.00 0.00 0.00 1.89
1709 1792 4.561254 AGGATGGATGTAAGTAGGGAGT 57.439 45.455 0.00 0.00 0.00 3.85
1718 1812 3.646162 AGCATCGGTAAGGATGGATGTAA 59.354 43.478 4.88 0.00 43.19 2.41
1722 1816 2.050144 ACAGCATCGGTAAGGATGGAT 58.950 47.619 4.88 0.00 43.19 3.41
1729 1823 6.073222 AGTGAAGTTAAAACAGCATCGGTAAG 60.073 38.462 0.00 0.00 0.00 2.34
1733 1827 4.213270 TGAGTGAAGTTAAAACAGCATCGG 59.787 41.667 0.00 0.00 0.00 4.18
1734 1828 5.342806 TGAGTGAAGTTAAAACAGCATCG 57.657 39.130 0.00 0.00 0.00 3.84
1782 1876 0.109723 TTGGGCACTTAGGTGGACAC 59.890 55.000 7.15 0.00 43.18 3.67
1786 1880 1.351017 TCTTCTTGGGCACTTAGGTGG 59.649 52.381 7.15 0.00 43.18 4.61
1793 1887 4.082125 CAGGTTATTTCTTCTTGGGCACT 58.918 43.478 0.00 0.00 0.00 4.40
1796 1890 4.640647 CCTACAGGTTATTTCTTCTTGGGC 59.359 45.833 0.00 0.00 0.00 5.36
1799 1893 7.112779 ACCATCCTACAGGTTATTTCTTCTTG 58.887 38.462 0.00 0.00 33.39 3.02
1814 1908 3.520691 AGTATCGGCTACCATCCTACA 57.479 47.619 0.00 0.00 0.00 2.74
1815 1909 3.056749 CCAAGTATCGGCTACCATCCTAC 60.057 52.174 0.00 0.00 0.00 3.18
1823 1917 2.547826 GAACCACCAAGTATCGGCTAC 58.452 52.381 0.00 0.00 0.00 3.58
1839 1933 3.328237 AACGAAAACATGACACGAACC 57.672 42.857 0.00 0.00 0.00 3.62
1881 1975 6.549364 TGGTTGCCATAATTCGAGGATATTTT 59.451 34.615 0.00 0.00 0.00 1.82
1882 1976 6.068010 TGGTTGCCATAATTCGAGGATATTT 58.932 36.000 0.00 0.00 0.00 1.40
1883 1977 5.630121 TGGTTGCCATAATTCGAGGATATT 58.370 37.500 0.00 0.00 0.00 1.28
1884 1978 5.241403 TGGTTGCCATAATTCGAGGATAT 57.759 39.130 0.00 0.00 0.00 1.63
1885 1979 4.698201 TGGTTGCCATAATTCGAGGATA 57.302 40.909 0.00 0.00 0.00 2.59
1887 1981 3.358111 TTGGTTGCCATAATTCGAGGA 57.642 42.857 0.00 0.00 31.53 3.71
1888 1982 4.448537 TTTTGGTTGCCATAATTCGAGG 57.551 40.909 0.00 0.00 31.53 4.63
1889 1983 5.868801 ACAATTTTGGTTGCCATAATTCGAG 59.131 36.000 11.69 6.18 41.02 4.04
1891 1985 7.330700 ACTTACAATTTTGGTTGCCATAATTCG 59.669 33.333 11.69 10.41 41.02 3.34
1892 1986 8.546597 ACTTACAATTTTGGTTGCCATAATTC 57.453 30.769 11.69 0.00 41.02 2.17
1912 2006 8.752254 GGCTTGAAAATTTTACTCACAACTTAC 58.248 33.333 2.75 0.00 0.00 2.34
1913 2007 8.691797 AGGCTTGAAAATTTTACTCACAACTTA 58.308 29.630 2.75 0.00 0.00 2.24
1914 2008 7.555965 AGGCTTGAAAATTTTACTCACAACTT 58.444 30.769 2.75 0.00 0.00 2.66
1915 2009 7.112452 AGGCTTGAAAATTTTACTCACAACT 57.888 32.000 2.75 0.00 0.00 3.16
1916 2010 7.918562 TGTAGGCTTGAAAATTTTACTCACAAC 59.081 33.333 2.75 0.00 0.00 3.32
1917 2011 8.001881 TGTAGGCTTGAAAATTTTACTCACAA 57.998 30.769 2.75 2.91 0.00 3.33
1918 2012 7.500892 TCTGTAGGCTTGAAAATTTTACTCACA 59.499 33.333 2.75 0.00 0.00 3.58
1919 2013 7.871853 TCTGTAGGCTTGAAAATTTTACTCAC 58.128 34.615 2.75 0.00 0.00 3.51
1920 2014 7.719633 ACTCTGTAGGCTTGAAAATTTTACTCA 59.280 33.333 2.75 0.00 0.00 3.41
1921 2015 8.100508 ACTCTGTAGGCTTGAAAATTTTACTC 57.899 34.615 2.75 0.00 0.00 2.59
1922 2016 7.719633 TGACTCTGTAGGCTTGAAAATTTTACT 59.280 33.333 2.75 0.87 0.00 2.24
1923 2017 7.871853 TGACTCTGTAGGCTTGAAAATTTTAC 58.128 34.615 2.75 0.00 0.00 2.01
1924 2018 8.458573 TTGACTCTGTAGGCTTGAAAATTTTA 57.541 30.769 2.75 0.00 0.00 1.52
1925 2019 6.959639 TGACTCTGTAGGCTTGAAAATTTT 57.040 33.333 2.28 2.28 0.00 1.82
1926 2020 6.959639 TTGACTCTGTAGGCTTGAAAATTT 57.040 33.333 0.00 0.00 0.00 1.82
1927 2021 7.231317 TCAATTGACTCTGTAGGCTTGAAAATT 59.769 33.333 3.38 0.00 0.00 1.82
1936 2030 6.989169 AGTTGATATCAATTGACTCTGTAGGC 59.011 38.462 20.65 3.51 38.24 3.93
1949 2043 8.345565 GCTCGTAAATTCCAAGTTGATATCAAT 58.654 33.333 20.65 3.58 38.24 2.57
1968 2062 6.018751 GCTTGAAGATTATCACATGCTCGTAA 60.019 38.462 16.18 0.00 33.04 3.18
1972 2066 4.577693 TGGCTTGAAGATTATCACATGCTC 59.422 41.667 19.68 14.21 35.06 4.26
1978 2072 3.314635 CCAGCTGGCTTGAAGATTATCAC 59.685 47.826 22.33 0.00 0.00 3.06
1985 2079 1.352083 ACTACCAGCTGGCTTGAAGA 58.648 50.000 33.06 8.24 39.32 2.87
1989 2083 0.320771 ACGAACTACCAGCTGGCTTG 60.321 55.000 33.06 23.22 39.32 4.01
2047 2143 6.018016 GCACTTGCAACTTTGGTTAATTCAAT 60.018 34.615 0.00 0.00 41.59 2.57
2077 2173 8.116026 ACTAATTCTGTAGGTTTGGGATTTGAT 58.884 33.333 0.00 0.00 0.00 2.57
2146 2242 4.589908 ACACACCCATCACCTTCTTTATC 58.410 43.478 0.00 0.00 0.00 1.75
2147 2243 4.657814 ACACACCCATCACCTTCTTTAT 57.342 40.909 0.00 0.00 0.00 1.40
2148 2244 4.141367 TGAACACACCCATCACCTTCTTTA 60.141 41.667 0.00 0.00 0.00 1.85
2149 2245 3.222603 GAACACACCCATCACCTTCTTT 58.777 45.455 0.00 0.00 0.00 2.52
2150 2246 2.174639 TGAACACACCCATCACCTTCTT 59.825 45.455 0.00 0.00 0.00 2.52
2151 2247 1.774254 TGAACACACCCATCACCTTCT 59.226 47.619 0.00 0.00 0.00 2.85
2155 2251 1.880027 GTTCTGAACACACCCATCACC 59.120 52.381 15.34 0.00 0.00 4.02
2156 2252 2.851195 AGTTCTGAACACACCCATCAC 58.149 47.619 21.50 0.00 0.00 3.06
2157 2253 3.118075 TCAAGTTCTGAACACACCCATCA 60.118 43.478 21.50 0.00 0.00 3.07
2161 2262 3.194005 TCTCAAGTTCTGAACACACCC 57.806 47.619 21.50 0.00 32.17 4.61
2163 2264 5.049818 CCATCTTCTCAAGTTCTGAACACAC 60.050 44.000 21.50 0.00 32.17 3.82
2171 2272 7.830099 AATTTTGTCCATCTTCTCAAGTTCT 57.170 32.000 0.00 0.00 0.00 3.01
2175 2276 8.919661 GCTTAAAATTTTGTCCATCTTCTCAAG 58.080 33.333 13.76 5.47 0.00 3.02
2178 2279 7.606349 AGGCTTAAAATTTTGTCCATCTTCTC 58.394 34.615 13.76 0.00 0.00 2.87
2179 2280 7.544804 AGGCTTAAAATTTTGTCCATCTTCT 57.455 32.000 13.76 0.00 0.00 2.85
2197 2298 2.603021 TGGCCAAAATGTCAAGGCTTA 58.397 42.857 0.61 0.00 46.23 3.09
2207 2308 3.389925 TCTGCTCTTTTGGCCAAAATG 57.610 42.857 37.05 31.08 39.29 2.32
2223 2410 6.869315 AACTTCCTCTTTTACTCTTTCTGC 57.131 37.500 0.00 0.00 0.00 4.26
2249 2436 7.491372 GCAATGCTAACACAGACAGTAGTATAA 59.509 37.037 0.00 0.00 0.00 0.98
2260 2456 4.872124 CACTATCAGCAATGCTAACACAGA 59.128 41.667 7.70 0.00 36.40 3.41
2266 2462 3.199727 TCCCACACTATCAGCAATGCTAA 59.800 43.478 7.70 0.00 36.40 3.09
2276 2472 1.866015 CCCTCAGTCCCACACTATCA 58.134 55.000 0.00 0.00 32.21 2.15
2321 2517 1.722011 ACATCCGCAAGTTTCTACGG 58.278 50.000 0.00 0.00 46.97 4.02
2323 2519 3.071479 TCCAACATCCGCAAGTTTCTAC 58.929 45.455 0.00 0.00 0.00 2.59
2337 2533 5.711976 CCTGTAAAATCTGGTCTTCCAACAT 59.288 40.000 0.00 0.00 43.81 2.71
2408 2623 4.389374 CACCCACGGATTAAATCATAGCT 58.611 43.478 0.00 0.00 0.00 3.32
2416 2631 3.072768 ACAACTACCACCCACGGATTAAA 59.927 43.478 0.00 0.00 0.00 1.52
2423 2638 2.997986 GTCAATACAACTACCACCCACG 59.002 50.000 0.00 0.00 0.00 4.94
2452 2667 0.731417 GCGCACATGCTCTCAAAGAT 59.269 50.000 0.30 0.00 39.32 2.40
2474 2689 1.243342 TGAAAGCATCCAGTTGGCGG 61.243 55.000 0.00 0.00 34.44 6.13
2484 2699 8.041829 AGCTAACATCATCATATGAAAGCATC 57.958 34.615 9.99 0.00 43.50 3.91
2491 2707 5.478332 ACTCGGAGCTAACATCATCATATGA 59.522 40.000 8.10 8.10 44.55 2.15
2492 2708 5.718146 ACTCGGAGCTAACATCATCATATG 58.282 41.667 4.58 0.00 0.00 1.78
2493 2709 5.991933 ACTCGGAGCTAACATCATCATAT 57.008 39.130 4.58 0.00 0.00 1.78
2494 2710 5.416013 CCTACTCGGAGCTAACATCATCATA 59.584 44.000 4.58 0.00 33.16 2.15
2556 2811 6.787085 AGTTTCGACTGGAAGATTTTACTG 57.213 37.500 0.00 0.00 37.43 2.74
2573 2828 4.803088 TCAAGGCAAACAAATGAAGTTTCG 59.197 37.500 0.00 0.00 37.10 3.46
2576 2831 5.343307 ACTCAAGGCAAACAAATGAAGTT 57.657 34.783 0.00 0.00 0.00 2.66
2610 2865 7.245292 AGATCAGGTGATAGCCTAACTAGAAT 58.755 38.462 0.00 0.00 37.04 2.40
2613 2868 6.909550 AAGATCAGGTGATAGCCTAACTAG 57.090 41.667 0.00 0.00 37.04 2.57
2614 2869 7.344612 TGAAAAGATCAGGTGATAGCCTAACTA 59.655 37.037 0.00 0.00 37.04 2.24
2615 2870 6.156949 TGAAAAGATCAGGTGATAGCCTAACT 59.843 38.462 0.00 0.00 37.04 2.24
2616 2871 6.349300 TGAAAAGATCAGGTGATAGCCTAAC 58.651 40.000 0.00 0.00 37.04 2.34
2617 2872 6.560003 TGAAAAGATCAGGTGATAGCCTAA 57.440 37.500 0.00 0.00 37.04 2.69
2630 2885 8.924511 ACTGGAAGATTTTACTGAAAAGATCA 57.075 30.769 0.00 0.00 36.14 2.92
2631 2886 8.171840 CGACTGGAAGATTTTACTGAAAAGATC 58.828 37.037 0.00 0.00 36.14 2.75
2632 2887 7.878127 TCGACTGGAAGATTTTACTGAAAAGAT 59.122 33.333 0.00 0.00 36.14 2.40
2633 2888 7.214381 TCGACTGGAAGATTTTACTGAAAAGA 58.786 34.615 0.00 0.00 36.14 2.52
2634 2889 7.421530 TCGACTGGAAGATTTTACTGAAAAG 57.578 36.000 0.00 0.00 36.14 2.27
2635 2890 7.979444 ATCGACTGGAAGATTTTACTGAAAA 57.021 32.000 0.00 0.00 36.76 2.29
2636 2891 8.311836 AGTATCGACTGGAAGATTTTACTGAAA 58.688 33.333 0.00 0.00 37.43 2.69
2639 2894 7.759886 TGAAGTATCGACTGGAAGATTTTACTG 59.240 37.037 0.00 0.00 35.52 2.74
2656 2911 5.698832 TCAAGGCAAACAAATGAAGTATCG 58.301 37.500 0.00 0.00 0.00 2.92
2674 2929 7.651027 ATCAATTGGAGGATTTTACTCAAGG 57.349 36.000 5.42 0.00 36.70 3.61
2688 2943 9.350357 CAAGACAAAATGAAGTATCAATTGGAG 57.650 33.333 5.42 0.00 39.17 3.86
2708 2963 2.609747 ACTGGGAGCTTACTCAAGACA 58.390 47.619 0.00 0.00 45.42 3.41
2709 2964 3.006967 TGAACTGGGAGCTTACTCAAGAC 59.993 47.826 0.00 0.00 45.42 3.01
2711 2966 3.685139 TGAACTGGGAGCTTACTCAAG 57.315 47.619 0.00 0.00 45.42 3.02
2712 2967 4.530553 TGTATGAACTGGGAGCTTACTCAA 59.469 41.667 0.00 0.00 45.42 3.02
2713 2968 4.093743 TGTATGAACTGGGAGCTTACTCA 58.906 43.478 0.00 0.00 45.42 3.41
2714 2969 4.737855 TGTATGAACTGGGAGCTTACTC 57.262 45.455 0.00 0.00 42.66 2.59
2715 2970 5.700402 ATTGTATGAACTGGGAGCTTACT 57.300 39.130 0.00 0.00 0.00 2.24
2716 2971 9.555727 TTAATATTGTATGAACTGGGAGCTTAC 57.444 33.333 0.00 0.00 0.00 2.34
2719 2974 7.721399 CCTTTAATATTGTATGAACTGGGAGCT 59.279 37.037 0.00 0.00 0.00 4.09
2720 2975 7.719633 TCCTTTAATATTGTATGAACTGGGAGC 59.280 37.037 0.00 0.00 0.00 4.70
2721 2976 9.799106 ATCCTTTAATATTGTATGAACTGGGAG 57.201 33.333 0.00 0.00 0.00 4.30
2722 2977 9.573166 CATCCTTTAATATTGTATGAACTGGGA 57.427 33.333 0.00 0.00 0.00 4.37
2723 2978 9.573166 TCATCCTTTAATATTGTATGAACTGGG 57.427 33.333 0.00 0.00 0.00 4.45
2738 2993 9.406113 CTTTCCTCTTCATCTTCATCCTTTAAT 57.594 33.333 0.00 0.00 0.00 1.40
2739 2994 8.386264 ACTTTCCTCTTCATCTTCATCCTTTAA 58.614 33.333 0.00 0.00 0.00 1.52
2740 2995 7.922382 ACTTTCCTCTTCATCTTCATCCTTTA 58.078 34.615 0.00 0.00 0.00 1.85
2741 2996 6.788218 ACTTTCCTCTTCATCTTCATCCTTT 58.212 36.000 0.00 0.00 0.00 3.11
2742 2997 6.385766 ACTTTCCTCTTCATCTTCATCCTT 57.614 37.500 0.00 0.00 0.00 3.36
2743 2998 6.013032 TCAACTTTCCTCTTCATCTTCATCCT 60.013 38.462 0.00 0.00 0.00 3.24
2744 2999 6.093357 GTCAACTTTCCTCTTCATCTTCATCC 59.907 42.308 0.00 0.00 0.00 3.51
2745 3000 6.652481 TGTCAACTTTCCTCTTCATCTTCATC 59.348 38.462 0.00 0.00 0.00 2.92
2746 3001 6.537355 TGTCAACTTTCCTCTTCATCTTCAT 58.463 36.000 0.00 0.00 0.00 2.57
2747 3002 5.928976 TGTCAACTTTCCTCTTCATCTTCA 58.071 37.500 0.00 0.00 0.00 3.02
2748 3003 6.867662 TTGTCAACTTTCCTCTTCATCTTC 57.132 37.500 0.00 0.00 0.00 2.87
2749 3004 7.830099 ATTTGTCAACTTTCCTCTTCATCTT 57.170 32.000 0.00 0.00 0.00 2.40
2750 3005 8.924511 TTATTTGTCAACTTTCCTCTTCATCT 57.075 30.769 0.00 0.00 0.00 2.90
2751 3006 9.617975 CTTTATTTGTCAACTTTCCTCTTCATC 57.382 33.333 0.00 0.00 0.00 2.92
2752 3007 9.136323 ACTTTATTTGTCAACTTTCCTCTTCAT 57.864 29.630 0.00 0.00 0.00 2.57
2753 3008 8.519799 ACTTTATTTGTCAACTTTCCTCTTCA 57.480 30.769 0.00 0.00 0.00 3.02
2754 3009 8.841300 AGACTTTATTTGTCAACTTTCCTCTTC 58.159 33.333 0.00 0.00 36.94 2.87
2755 3010 8.753497 AGACTTTATTTGTCAACTTTCCTCTT 57.247 30.769 0.00 0.00 36.94 2.85
2756 3011 8.753497 AAGACTTTATTTGTCAACTTTCCTCT 57.247 30.769 0.00 0.00 36.94 3.69
2757 3012 8.076781 GGAAGACTTTATTTGTCAACTTTCCTC 58.923 37.037 0.00 0.00 34.74 3.71
2758 3013 7.559897 TGGAAGACTTTATTTGTCAACTTTCCT 59.440 33.333 0.00 0.00 36.67 3.36
2759 3014 7.712797 TGGAAGACTTTATTTGTCAACTTTCC 58.287 34.615 0.00 0.00 36.46 3.13
2760 3015 9.750125 ATTGGAAGACTTTATTTGTCAACTTTC 57.250 29.630 0.00 0.00 36.94 2.62
2762 3017 9.533253 CAATTGGAAGACTTTATTTGTCAACTT 57.467 29.630 0.00 0.00 36.94 2.66
2763 3018 8.912988 TCAATTGGAAGACTTTATTTGTCAACT 58.087 29.630 5.42 0.00 36.94 3.16
2764 3019 9.696917 ATCAATTGGAAGACTTTATTTGTCAAC 57.303 29.630 5.42 0.00 36.94 3.18
2770 3025 9.753674 TGGAGTATCAATTGGAAGACTTTATTT 57.246 29.630 5.42 0.00 36.25 1.40
2771 3026 9.927081 ATGGAGTATCAATTGGAAGACTTTATT 57.073 29.630 5.42 0.00 36.25 1.40
2772 3027 9.927081 AATGGAGTATCAATTGGAAGACTTTAT 57.073 29.630 5.42 0.00 37.37 1.40
2777 3032 6.238593 GCAGAATGGAGTATCAATTGGAAGAC 60.239 42.308 5.42 0.00 39.34 3.01
2794 3049 2.996631 AGCTTACTCAAGGCAGAATGG 58.003 47.619 0.00 0.00 31.62 3.16
2799 3054 2.289945 ACTGGAAGCTTACTCAAGGCAG 60.290 50.000 10.74 0.00 37.60 4.85
2831 3086 8.386264 ACTTTCCTCTTCATCTTCATCCTTTAA 58.614 33.333 0.00 0.00 0.00 1.52
2852 3107 9.788960 AGTTCTTCACTTTATTTGTCAACTTTC 57.211 29.630 0.00 0.00 27.32 2.62
2923 3178 7.059156 AGCTTACTCAAGGCAAGATATCAATT 58.941 34.615 5.32 0.00 31.96 2.32
3000 3260 7.283127 AGTTTGCTGATTTCAGTTCTTCACTTA 59.717 33.333 9.21 0.00 45.45 2.24
3094 3354 2.230130 AAGAGAGAGGGTGTGGAGAG 57.770 55.000 0.00 0.00 0.00 3.20
3104 3364 6.927294 ACAACAGTAACAAAAAGAGAGAGG 57.073 37.500 0.00 0.00 0.00 3.69
3155 3439 5.394773 GCAAAAAGAAGGTTTACCCAACAGA 60.395 40.000 0.00 0.00 37.07 3.41
3201 3485 4.379394 CCAAAGGTGATAACAACCATGTCG 60.379 45.833 0.00 0.00 39.40 4.35
3217 3501 1.228675 CTGAAGCCCTGCCAAAGGT 60.229 57.895 0.00 0.00 45.78 3.50
3392 3676 8.542926 TCTCTTTTCAAATGATCTATCTCCACA 58.457 33.333 0.00 0.00 0.00 4.17
3416 3700 0.252479 CCATCAAGAGCTGCCTGTCT 59.748 55.000 0.00 0.00 0.00 3.41
3515 3799 0.107268 TCTGCTGTTGCTTCTGCTCA 59.893 50.000 10.44 0.00 40.48 4.26
3566 3850 3.216800 CAGATGGTGTATGAACATGGGG 58.783 50.000 0.00 0.00 38.08 4.96
3580 3864 0.042431 ACTCTGGGAGAGCAGATGGT 59.958 55.000 0.33 0.00 46.12 3.55
3584 3868 0.701147 TCTCACTCTGGGAGAGCAGA 59.299 55.000 0.33 0.51 46.12 4.26
3606 3890 0.873743 GCATCTTCGAGCTCCTTCCG 60.874 60.000 8.47 0.00 0.00 4.30
3617 3901 6.909357 GTCTTTTATTTGAGATGGCATCTTCG 59.091 38.462 29.35 11.09 40.38 3.79
3935 4219 2.749621 GTTCATGTCATCTGGAACCACC 59.250 50.000 4.04 0.00 34.92 4.61
3984 4268 1.393883 GGAATTCGCGTCCTTTGAGTC 59.606 52.381 5.77 0.00 31.94 3.36
3989 4273 1.017701 GTCCGGAATTCGCGTCCTTT 61.018 55.000 5.23 0.00 37.59 3.11
3993 4277 1.563111 TATTGTCCGGAATTCGCGTC 58.437 50.000 5.23 0.00 37.59 5.19
3996 4280 2.875933 TGGATTATTGTCCGGAATTCGC 59.124 45.455 5.23 0.00 41.35 4.70
4090 4378 1.134580 ACTGACTGATCATGGCCGAAG 60.135 52.381 0.00 0.00 33.22 3.79
4165 4453 4.394920 ACACGGCATTGACGAAAATAAGAT 59.605 37.500 20.74 0.00 35.20 2.40
4220 4508 1.008079 GCAGACAGTGGCAAGCAAC 60.008 57.895 8.41 0.00 0.00 4.17
4223 4511 1.895707 ACAGCAGACAGTGGCAAGC 60.896 57.895 0.00 1.21 0.00 4.01
4224 4512 1.947013 CACAGCAGACAGTGGCAAG 59.053 57.895 0.00 0.00 30.10 4.01
4227 4515 1.727511 TTTGCACAGCAGACAGTGGC 61.728 55.000 0.00 0.00 40.61 5.01
4228 4516 0.309922 CTTTGCACAGCAGACAGTGG 59.690 55.000 0.00 0.00 40.61 4.00
4229 4517 1.302366 TCTTTGCACAGCAGACAGTG 58.698 50.000 0.00 0.00 40.61 3.66
4230 4518 2.267174 ATCTTTGCACAGCAGACAGT 57.733 45.000 0.00 0.00 40.61 3.55
4231 4519 3.637998 AAATCTTTGCACAGCAGACAG 57.362 42.857 0.00 0.00 40.61 3.51
4232 4520 4.580167 ACTAAAATCTTTGCACAGCAGACA 59.420 37.500 0.00 0.00 40.61 3.41
4233 4521 5.113502 ACTAAAATCTTTGCACAGCAGAC 57.886 39.130 0.00 0.00 40.61 3.51
4234 4522 4.083855 CGACTAAAATCTTTGCACAGCAGA 60.084 41.667 0.00 0.00 40.61 4.26
4235 4523 4.153986 CGACTAAAATCTTTGCACAGCAG 58.846 43.478 0.00 0.00 40.61 4.24
4236 4524 3.058293 CCGACTAAAATCTTTGCACAGCA 60.058 43.478 0.00 0.00 36.47 4.41
4395 4773 2.923121 AGCAGGCACATTACACATAGG 58.077 47.619 0.00 0.00 0.00 2.57
4409 4787 3.879892 CCTAAAAGAAGATGGTAGCAGGC 59.120 47.826 0.00 0.00 0.00 4.85
4439 4819 2.087646 CTCCCTAAGGAAGCAACAAGC 58.912 52.381 0.00 0.00 43.40 4.01
4454 4835 2.772515 GGATACAGTACAAAGCCTCCCT 59.227 50.000 0.00 0.00 0.00 4.20
4510 4891 9.766277 CTTCTGATAAACTTTCTTAATGTGAGC 57.234 33.333 0.00 0.00 0.00 4.26
4541 4927 7.309805 GGGTTTACAAGTCAGGAATTAATGCTT 60.310 37.037 0.00 0.00 0.00 3.91
4585 4971 6.040878 ACATACTCCGTGATAAACTTACAGC 58.959 40.000 0.00 0.00 0.00 4.40
4615 5001 8.632679 AGCAATGTGAGAGAAAACAATAGAAAA 58.367 29.630 0.00 0.00 0.00 2.29
4621 5007 9.768662 AAATAAAGCAATGTGAGAGAAAACAAT 57.231 25.926 0.00 0.00 0.00 2.71
4632 5018 4.023279 ACTCGCACAAATAAAGCAATGTGA 60.023 37.500 8.78 0.00 44.52 3.58
4644 5030 8.987890 AGCAAATAAATTTTAACTCGCACAAAT 58.012 25.926 0.00 0.00 0.00 2.32
4645 5031 8.359060 AGCAAATAAATTTTAACTCGCACAAA 57.641 26.923 0.00 0.00 0.00 2.83
4646 5032 7.938563 AGCAAATAAATTTTAACTCGCACAA 57.061 28.000 0.00 0.00 0.00 3.33
4678 5064 8.088365 AGTTTATGGAAGTAAGCATTTTGTTCC 58.912 33.333 0.00 0.00 35.09 3.62
4687 5073 5.646360 GCAACCTAGTTTATGGAAGTAAGCA 59.354 40.000 0.00 0.00 0.00 3.91
4688 5074 5.646360 TGCAACCTAGTTTATGGAAGTAAGC 59.354 40.000 0.00 0.00 0.00 3.09
4764 5150 6.989169 GGACATACATCAACTCTTCATTAGCT 59.011 38.462 0.00 0.00 0.00 3.32
4765 5151 6.989169 AGGACATACATCAACTCTTCATTAGC 59.011 38.462 0.00 0.00 0.00 3.09
4766 5152 7.380870 CGAGGACATACATCAACTCTTCATTAG 59.619 40.741 0.00 0.00 0.00 1.73
4782 5168 7.033791 TCAGAAGATAAACAACGAGGACATAC 58.966 38.462 0.00 0.00 0.00 2.39
4788 5174 7.329717 GGCTATATCAGAAGATAAACAACGAGG 59.670 40.741 0.00 0.00 39.99 4.63
4835 5222 3.535629 CTGGCGACTGGCTGTGGAA 62.536 63.158 10.56 0.00 42.94 3.53
4891 5278 7.118971 GCATTGGTTTGCCATATCTTTTGTTTA 59.881 33.333 0.00 0.00 45.56 2.01
4893 5280 5.412286 GCATTGGTTTGCCATATCTTTTGTT 59.588 36.000 0.00 0.00 45.56 2.83
4894 5281 4.937015 GCATTGGTTTGCCATATCTTTTGT 59.063 37.500 0.00 0.00 45.56 2.83
4895 5282 5.064198 CAGCATTGGTTTGCCATATCTTTTG 59.936 40.000 0.00 0.00 45.56 2.44
4896 5283 5.180271 CAGCATTGGTTTGCCATATCTTTT 58.820 37.500 0.00 0.00 45.56 2.27
4897 5284 4.761975 CAGCATTGGTTTGCCATATCTTT 58.238 39.130 0.00 0.00 45.56 2.52
4898 5285 3.431207 GCAGCATTGGTTTGCCATATCTT 60.431 43.478 0.00 0.00 45.56 2.40
4899 5286 2.101917 GCAGCATTGGTTTGCCATATCT 59.898 45.455 0.00 0.00 45.56 1.98
4900 5287 2.476821 GCAGCATTGGTTTGCCATATC 58.523 47.619 0.00 0.00 45.56 1.63
4913 5300 0.961019 ACCATGTTCAACGCAGCATT 59.039 45.000 0.00 0.00 0.00 3.56
4919 5306 5.289595 TCTATGATAGACCATGTTCAACGC 58.710 41.667 0.00 0.00 0.00 4.84
4931 5318 7.652727 TGTACTGCATCTGTTCTATGATAGAC 58.347 38.462 0.78 0.00 33.84 2.59
4933 5320 9.138062 GATTGTACTGCATCTGTTCTATGATAG 57.862 37.037 0.00 0.00 0.00 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.