Multiple sequence alignment - TraesCS5A01G437700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G437700 chr5A 100.000 2811 0 0 1 2811 619684556 619681746 0.000000e+00 5192
1 TraesCS5A01G437700 chr5A 75.714 420 80 20 1367 1775 581926703 581927111 1.030000e-44 191
2 TraesCS5A01G437700 chr5D 90.959 2013 100 32 718 2668 495619700 495617708 0.000000e+00 2634
3 TraesCS5A01G437700 chr5D 96.296 135 4 1 2672 2806 495617659 495617526 1.310000e-53 220
4 TraesCS5A01G437700 chr5D 75.952 420 79 20 1367 1775 461912975 461913383 2.210000e-46 196
5 TraesCS5A01G437700 chr5D 80.097 206 29 9 333 531 495620193 495619993 2.920000e-30 143
6 TraesCS5A01G437700 chr5B 88.647 1929 101 41 719 2573 612674867 612672983 0.000000e+00 2241
7 TraesCS5A01G437700 chr5B 96.296 135 4 1 2672 2806 612672662 612672529 1.310000e-53 220
8 TraesCS5A01G437700 chr5B 75.238 420 82 20 1367 1775 567874352 567874760 2.220000e-41 180
9 TraesCS5A01G437700 chr4D 87.705 122 12 3 171 290 62475865 62475985 3.780000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G437700 chr5A 619681746 619684556 2810 True 5192.0 5192 100.000000 1 2811 1 chr5A.!!$R1 2810
1 TraesCS5A01G437700 chr5D 495617526 495620193 2667 True 999.0 2634 89.117333 333 2806 3 chr5D.!!$R1 2473
2 TraesCS5A01G437700 chr5B 612672529 612674867 2338 True 1230.5 2241 92.471500 719 2806 2 chr5B.!!$R1 2087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.033011 TCTGACTCAGGGTAGGAGCC 60.033 60.0 6.2 0.0 35.79 4.70 F
374 375 0.036294 CCGGACTGGAGGAAAAGGAC 60.036 60.0 0.0 0.0 42.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1361 1516 0.110486 ATGTTCACCGGGTGCTTCTT 59.890 50.0 22.42 9.75 32.98 2.52 R
2014 2200 0.174162 GGTGTTGATGATGCTTGCCC 59.826 55.0 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.460330 CCGGATTGGCGATGATAGC 58.540 57.895 0.00 0.00 0.00 2.97
19 20 1.354337 CCGGATTGGCGATGATAGCG 61.354 60.000 0.00 0.00 35.00 4.26
20 21 1.354337 CGGATTGGCGATGATAGCGG 61.354 60.000 0.00 0.00 35.00 5.52
25 26 4.266983 GCGATGATAGCGGCATCA 57.733 55.556 14.40 14.40 41.66 3.07
26 27 2.532186 GCGATGATAGCGGCATCAA 58.468 52.632 15.50 4.21 41.66 2.57
27 28 1.081892 GCGATGATAGCGGCATCAAT 58.918 50.000 15.50 7.60 41.66 2.57
28 29 1.201998 GCGATGATAGCGGCATCAATG 60.202 52.381 15.50 12.54 41.66 2.82
50 51 3.040965 TTTTTGAGGAGCAGGCAGG 57.959 52.632 0.00 0.00 0.00 4.85
51 52 0.478072 TTTTTGAGGAGCAGGCAGGA 59.522 50.000 0.00 0.00 0.00 3.86
52 53 0.037303 TTTTGAGGAGCAGGCAGGAG 59.963 55.000 0.00 0.00 0.00 3.69
53 54 0.837691 TTTGAGGAGCAGGCAGGAGA 60.838 55.000 0.00 0.00 0.00 3.71
54 55 0.619832 TTGAGGAGCAGGCAGGAGAT 60.620 55.000 0.00 0.00 0.00 2.75
55 56 1.047596 TGAGGAGCAGGCAGGAGATC 61.048 60.000 0.00 0.00 0.00 2.75
56 57 0.760189 GAGGAGCAGGCAGGAGATCT 60.760 60.000 0.00 0.00 0.00 2.75
57 58 1.049855 AGGAGCAGGCAGGAGATCTG 61.050 60.000 0.00 0.00 46.03 2.90
58 59 1.047596 GGAGCAGGCAGGAGATCTGA 61.048 60.000 0.00 0.00 46.18 3.27
59 60 1.050204 GAGCAGGCAGGAGATCTGAT 58.950 55.000 0.00 0.00 46.18 2.90
60 61 1.417145 GAGCAGGCAGGAGATCTGATT 59.583 52.381 0.00 0.00 46.18 2.57
61 62 1.845143 AGCAGGCAGGAGATCTGATTT 59.155 47.619 0.00 0.00 46.18 2.17
62 63 2.158784 AGCAGGCAGGAGATCTGATTTC 60.159 50.000 0.00 0.00 46.18 2.17
63 64 2.421107 GCAGGCAGGAGATCTGATTTCA 60.421 50.000 0.00 0.00 46.18 2.69
64 65 3.748027 GCAGGCAGGAGATCTGATTTCAT 60.748 47.826 0.00 0.23 46.18 2.57
65 66 4.462133 CAGGCAGGAGATCTGATTTCATT 58.538 43.478 0.00 0.00 46.18 2.57
66 67 4.888239 CAGGCAGGAGATCTGATTTCATTT 59.112 41.667 0.00 0.00 46.18 2.32
67 68 6.060136 CAGGCAGGAGATCTGATTTCATTTA 58.940 40.000 0.00 0.00 46.18 1.40
68 69 6.205076 CAGGCAGGAGATCTGATTTCATTTAG 59.795 42.308 0.00 0.00 46.18 1.85
69 70 6.100859 AGGCAGGAGATCTGATTTCATTTAGA 59.899 38.462 0.00 0.00 46.18 2.10
70 71 6.769822 GGCAGGAGATCTGATTTCATTTAGAA 59.230 38.462 0.00 0.00 46.18 2.10
71 72 7.284034 GGCAGGAGATCTGATTTCATTTAGAAA 59.716 37.037 0.00 0.00 46.18 2.52
72 73 8.344098 GCAGGAGATCTGATTTCATTTAGAAAG 58.656 37.037 0.00 0.00 44.82 2.62
73 74 8.838365 CAGGAGATCTGATTTCATTTAGAAAGG 58.162 37.037 0.00 0.00 46.18 3.11
90 91 6.803154 AGAAAGGAAAAATCACTAAGTCGG 57.197 37.500 0.00 0.00 0.00 4.79
91 92 6.296803 AGAAAGGAAAAATCACTAAGTCGGT 58.703 36.000 0.00 0.00 0.00 4.69
92 93 6.771267 AGAAAGGAAAAATCACTAAGTCGGTT 59.229 34.615 0.00 0.00 0.00 4.44
93 94 5.941948 AGGAAAAATCACTAAGTCGGTTG 57.058 39.130 0.00 0.00 0.00 3.77
94 95 4.215613 AGGAAAAATCACTAAGTCGGTTGC 59.784 41.667 0.00 0.00 0.00 4.17
95 96 4.215613 GGAAAAATCACTAAGTCGGTTGCT 59.784 41.667 0.00 0.00 0.00 3.91
96 97 5.278315 GGAAAAATCACTAAGTCGGTTGCTT 60.278 40.000 0.00 0.00 0.00 3.91
97 98 5.767816 AAAATCACTAAGTCGGTTGCTTT 57.232 34.783 0.00 0.00 0.00 3.51
98 99 6.870971 AAAATCACTAAGTCGGTTGCTTTA 57.129 33.333 0.00 0.00 0.00 1.85
99 100 7.448748 AAAATCACTAAGTCGGTTGCTTTAT 57.551 32.000 0.00 0.00 0.00 1.40
100 101 8.556213 AAAATCACTAAGTCGGTTGCTTTATA 57.444 30.769 0.00 0.00 0.00 0.98
101 102 8.556213 AAATCACTAAGTCGGTTGCTTTATAA 57.444 30.769 0.00 0.00 0.00 0.98
102 103 7.772332 ATCACTAAGTCGGTTGCTTTATAAG 57.228 36.000 0.00 0.00 0.00 1.73
103 104 6.927416 TCACTAAGTCGGTTGCTTTATAAGA 58.073 36.000 0.00 0.00 0.00 2.10
104 105 7.380536 TCACTAAGTCGGTTGCTTTATAAGAA 58.619 34.615 0.00 0.00 0.00 2.52
105 106 7.874016 TCACTAAGTCGGTTGCTTTATAAGAAA 59.126 33.333 0.00 0.00 0.00 2.52
106 107 8.500773 CACTAAGTCGGTTGCTTTATAAGAAAA 58.499 33.333 0.00 0.00 0.00 2.29
107 108 9.059260 ACTAAGTCGGTTGCTTTATAAGAAAAA 57.941 29.630 0.00 0.00 0.00 1.94
108 109 9.326339 CTAAGTCGGTTGCTTTATAAGAAAAAC 57.674 33.333 0.00 0.00 0.00 2.43
109 110 7.506328 AGTCGGTTGCTTTATAAGAAAAACT 57.494 32.000 0.00 0.00 0.00 2.66
110 111 8.611654 AGTCGGTTGCTTTATAAGAAAAACTA 57.388 30.769 0.00 0.00 0.00 2.24
111 112 8.718734 AGTCGGTTGCTTTATAAGAAAAACTAG 58.281 33.333 0.00 0.00 0.00 2.57
112 113 7.961283 GTCGGTTGCTTTATAAGAAAAACTAGG 59.039 37.037 0.00 0.00 0.00 3.02
113 114 6.745907 CGGTTGCTTTATAAGAAAAACTAGGC 59.254 38.462 0.00 0.00 0.00 3.93
114 115 7.033791 GGTTGCTTTATAAGAAAAACTAGGCC 58.966 38.462 0.00 0.00 0.00 5.19
115 116 6.431198 TGCTTTATAAGAAAAACTAGGCCG 57.569 37.500 0.00 0.00 0.00 6.13
116 117 6.174760 TGCTTTATAAGAAAAACTAGGCCGA 58.825 36.000 0.00 0.00 0.00 5.54
117 118 6.655848 TGCTTTATAAGAAAAACTAGGCCGAA 59.344 34.615 0.00 0.00 0.00 4.30
118 119 7.175293 TGCTTTATAAGAAAAACTAGGCCGAAA 59.825 33.333 0.00 0.00 0.00 3.46
119 120 8.024865 GCTTTATAAGAAAAACTAGGCCGAAAA 58.975 33.333 0.00 0.00 0.00 2.29
120 121 9.338291 CTTTATAAGAAAAACTAGGCCGAAAAC 57.662 33.333 0.00 0.00 0.00 2.43
121 122 4.579454 AAGAAAAACTAGGCCGAAAACC 57.421 40.909 0.00 0.00 0.00 3.27
122 123 2.889045 AGAAAAACTAGGCCGAAAACCC 59.111 45.455 0.00 0.00 0.00 4.11
123 124 2.670019 AAAACTAGGCCGAAAACCCT 57.330 45.000 0.00 0.00 35.22 4.34
124 125 2.670019 AAACTAGGCCGAAAACCCTT 57.330 45.000 0.00 0.00 32.65 3.95
125 126 3.793819 AAACTAGGCCGAAAACCCTTA 57.206 42.857 0.00 0.00 32.65 2.69
126 127 4.311520 AAACTAGGCCGAAAACCCTTAT 57.688 40.909 0.00 0.00 32.65 1.73
127 128 5.440207 AAACTAGGCCGAAAACCCTTATA 57.560 39.130 0.00 0.00 32.65 0.98
128 129 5.440207 AACTAGGCCGAAAACCCTTATAA 57.560 39.130 0.00 0.00 32.65 0.98
129 130 5.440207 ACTAGGCCGAAAACCCTTATAAA 57.560 39.130 0.00 0.00 32.65 1.40
130 131 5.188434 ACTAGGCCGAAAACCCTTATAAAC 58.812 41.667 0.00 0.00 32.65 2.01
131 132 4.036941 AGGCCGAAAACCCTTATAAACA 57.963 40.909 0.00 0.00 0.00 2.83
132 133 4.409187 AGGCCGAAAACCCTTATAAACAA 58.591 39.130 0.00 0.00 0.00 2.83
133 134 4.461431 AGGCCGAAAACCCTTATAAACAAG 59.539 41.667 0.00 0.00 0.00 3.16
134 135 4.219070 GGCCGAAAACCCTTATAAACAAGT 59.781 41.667 0.00 0.00 0.00 3.16
135 136 5.158494 GCCGAAAACCCTTATAAACAAGTG 58.842 41.667 0.00 0.00 0.00 3.16
136 137 5.048573 GCCGAAAACCCTTATAAACAAGTGA 60.049 40.000 0.00 0.00 0.00 3.41
137 138 6.515365 GCCGAAAACCCTTATAAACAAGTGAA 60.515 38.462 0.00 0.00 0.00 3.18
138 139 7.427214 CCGAAAACCCTTATAAACAAGTGAAA 58.573 34.615 0.00 0.00 0.00 2.69
139 140 7.921745 CCGAAAACCCTTATAAACAAGTGAAAA 59.078 33.333 0.00 0.00 0.00 2.29
140 141 9.303537 CGAAAACCCTTATAAACAAGTGAAAAA 57.696 29.630 0.00 0.00 0.00 1.94
145 146 9.416284 ACCCTTATAAACAAGTGAAAAAGAAGA 57.584 29.630 0.00 0.00 0.00 2.87
151 152 7.873739 AAACAAGTGAAAAAGAAGAACTGTG 57.126 32.000 0.00 0.00 0.00 3.66
152 153 5.954335 ACAAGTGAAAAAGAAGAACTGTGG 58.046 37.500 0.00 0.00 0.00 4.17
153 154 5.710099 ACAAGTGAAAAAGAAGAACTGTGGA 59.290 36.000 0.00 0.00 0.00 4.02
154 155 6.208599 ACAAGTGAAAAAGAAGAACTGTGGAA 59.791 34.615 0.00 0.00 0.00 3.53
155 156 6.442513 AGTGAAAAAGAAGAACTGTGGAAG 57.557 37.500 0.00 0.00 0.00 3.46
156 157 5.037385 GTGAAAAAGAAGAACTGTGGAAGC 58.963 41.667 0.00 0.00 0.00 3.86
157 158 4.097892 TGAAAAAGAAGAACTGTGGAAGCC 59.902 41.667 0.00 0.00 0.00 4.35
158 159 3.297134 AAAGAAGAACTGTGGAAGCCA 57.703 42.857 0.00 0.00 0.00 4.75
167 168 3.019783 TGGAAGCCACCCCAAACA 58.980 55.556 0.00 0.00 0.00 2.83
168 169 1.546228 TGGAAGCCACCCCAAACAT 59.454 52.632 0.00 0.00 0.00 2.71
169 170 0.780637 TGGAAGCCACCCCAAACATA 59.219 50.000 0.00 0.00 0.00 2.29
170 171 1.182667 GGAAGCCACCCCAAACATAC 58.817 55.000 0.00 0.00 0.00 2.39
171 172 1.549037 GGAAGCCACCCCAAACATACA 60.549 52.381 0.00 0.00 0.00 2.29
172 173 2.456577 GAAGCCACCCCAAACATACAT 58.543 47.619 0.00 0.00 0.00 2.29
173 174 2.143876 AGCCACCCCAAACATACATC 57.856 50.000 0.00 0.00 0.00 3.06
174 175 1.357420 AGCCACCCCAAACATACATCA 59.643 47.619 0.00 0.00 0.00 3.07
175 176 2.175202 GCCACCCCAAACATACATCAA 58.825 47.619 0.00 0.00 0.00 2.57
176 177 2.094234 GCCACCCCAAACATACATCAAC 60.094 50.000 0.00 0.00 0.00 3.18
177 178 2.495669 CCACCCCAAACATACATCAACC 59.504 50.000 0.00 0.00 0.00 3.77
178 179 3.430453 CACCCCAAACATACATCAACCT 58.570 45.455 0.00 0.00 0.00 3.50
179 180 3.443681 CACCCCAAACATACATCAACCTC 59.556 47.826 0.00 0.00 0.00 3.85
180 181 3.023832 CCCCAAACATACATCAACCTCC 58.976 50.000 0.00 0.00 0.00 4.30
181 182 3.563261 CCCCAAACATACATCAACCTCCA 60.563 47.826 0.00 0.00 0.00 3.86
182 183 4.085733 CCCAAACATACATCAACCTCCAA 58.914 43.478 0.00 0.00 0.00 3.53
183 184 4.526262 CCCAAACATACATCAACCTCCAAA 59.474 41.667 0.00 0.00 0.00 3.28
184 185 5.469479 CCAAACATACATCAACCTCCAAAC 58.531 41.667 0.00 0.00 0.00 2.93
185 186 5.153513 CAAACATACATCAACCTCCAAACG 58.846 41.667 0.00 0.00 0.00 3.60
186 187 2.747446 ACATACATCAACCTCCAAACGC 59.253 45.455 0.00 0.00 0.00 4.84
187 188 1.816074 TACATCAACCTCCAAACGCC 58.184 50.000 0.00 0.00 0.00 5.68
188 189 0.179004 ACATCAACCTCCAAACGCCA 60.179 50.000 0.00 0.00 0.00 5.69
189 190 0.240945 CATCAACCTCCAAACGCCAC 59.759 55.000 0.00 0.00 0.00 5.01
190 191 0.110486 ATCAACCTCCAAACGCCACT 59.890 50.000 0.00 0.00 0.00 4.00
191 192 0.106918 TCAACCTCCAAACGCCACTT 60.107 50.000 0.00 0.00 0.00 3.16
192 193 0.310854 CAACCTCCAAACGCCACTTC 59.689 55.000 0.00 0.00 0.00 3.01
193 194 0.822121 AACCTCCAAACGCCACTTCC 60.822 55.000 0.00 0.00 0.00 3.46
194 195 1.971695 CCTCCAAACGCCACTTCCC 60.972 63.158 0.00 0.00 0.00 3.97
195 196 1.073199 CTCCAAACGCCACTTCCCT 59.927 57.895 0.00 0.00 0.00 4.20
196 197 0.537371 CTCCAAACGCCACTTCCCTT 60.537 55.000 0.00 0.00 0.00 3.95
197 198 0.536460 TCCAAACGCCACTTCCCTTC 60.536 55.000 0.00 0.00 0.00 3.46
198 199 1.524008 CCAAACGCCACTTCCCTTCC 61.524 60.000 0.00 0.00 0.00 3.46
199 200 1.599797 AAACGCCACTTCCCTTCCG 60.600 57.895 0.00 0.00 0.00 4.30
200 201 2.047213 AAACGCCACTTCCCTTCCGA 62.047 55.000 0.00 0.00 0.00 4.55
201 202 2.434359 CGCCACTTCCCTTCCGAC 60.434 66.667 0.00 0.00 0.00 4.79
202 203 2.046217 GCCACTTCCCTTCCGACC 60.046 66.667 0.00 0.00 0.00 4.79
203 204 2.264794 CCACTTCCCTTCCGACCG 59.735 66.667 0.00 0.00 0.00 4.79
204 205 2.280552 CCACTTCCCTTCCGACCGA 61.281 63.158 0.00 0.00 0.00 4.69
205 206 1.080025 CACTTCCCTTCCGACCGAC 60.080 63.158 0.00 0.00 0.00 4.79
206 207 2.281295 ACTTCCCTTCCGACCGACC 61.281 63.158 0.00 0.00 0.00 4.79
207 208 2.203669 TTCCCTTCCGACCGACCA 60.204 61.111 0.00 0.00 0.00 4.02
208 209 1.611261 TTCCCTTCCGACCGACCAT 60.611 57.895 0.00 0.00 0.00 3.55
209 210 0.324552 TTCCCTTCCGACCGACCATA 60.325 55.000 0.00 0.00 0.00 2.74
210 211 0.324552 TCCCTTCCGACCGACCATAA 60.325 55.000 0.00 0.00 0.00 1.90
211 212 0.756903 CCCTTCCGACCGACCATAAT 59.243 55.000 0.00 0.00 0.00 1.28
212 213 1.140252 CCCTTCCGACCGACCATAATT 59.860 52.381 0.00 0.00 0.00 1.40
213 214 2.480845 CCTTCCGACCGACCATAATTC 58.519 52.381 0.00 0.00 0.00 2.17
214 215 2.159014 CCTTCCGACCGACCATAATTCA 60.159 50.000 0.00 0.00 0.00 2.57
215 216 2.882927 TCCGACCGACCATAATTCAG 57.117 50.000 0.00 0.00 0.00 3.02
216 217 2.104967 TCCGACCGACCATAATTCAGT 58.895 47.619 0.00 0.00 0.00 3.41
217 218 2.159156 TCCGACCGACCATAATTCAGTG 60.159 50.000 0.00 0.00 0.00 3.66
218 219 2.201732 CGACCGACCATAATTCAGTGG 58.798 52.381 3.59 3.59 41.35 4.00
219 220 2.561569 GACCGACCATAATTCAGTGGG 58.438 52.381 8.71 5.89 39.86 4.61
220 221 2.169769 GACCGACCATAATTCAGTGGGA 59.830 50.000 9.49 0.00 39.86 4.37
221 222 2.170607 ACCGACCATAATTCAGTGGGAG 59.829 50.000 9.49 3.71 39.86 4.30
222 223 2.485479 CCGACCATAATTCAGTGGGAGG 60.485 54.545 8.71 7.38 39.86 4.30
223 224 2.434336 CGACCATAATTCAGTGGGAGGA 59.566 50.000 8.71 0.00 39.86 3.71
224 225 3.118408 CGACCATAATTCAGTGGGAGGAA 60.118 47.826 8.71 0.00 39.86 3.36
225 226 4.625324 CGACCATAATTCAGTGGGAGGAAA 60.625 45.833 8.71 0.00 39.86 3.13
226 227 5.449553 GACCATAATTCAGTGGGAGGAAAT 58.550 41.667 8.71 0.00 39.86 2.17
227 228 6.590656 ACCATAATTCAGTGGGAGGAAATA 57.409 37.500 8.71 0.00 39.86 1.40
228 229 6.365520 ACCATAATTCAGTGGGAGGAAATAC 58.634 40.000 8.71 0.00 39.86 1.89
229 230 6.160459 ACCATAATTCAGTGGGAGGAAATACT 59.840 38.462 8.71 0.00 39.86 2.12
230 231 6.712547 CCATAATTCAGTGGGAGGAAATACTC 59.287 42.308 0.00 0.00 36.76 2.59
231 232 7.420680 CCATAATTCAGTGGGAGGAAATACTCT 60.421 40.741 0.00 0.00 37.63 3.24
232 233 6.394345 AATTCAGTGGGAGGAAATACTCTT 57.606 37.500 0.00 0.00 37.63 2.85
233 234 5.422214 TTCAGTGGGAGGAAATACTCTTC 57.578 43.478 0.00 0.00 37.63 2.87
234 235 3.447586 TCAGTGGGAGGAAATACTCTTCG 59.552 47.826 0.00 0.00 37.63 3.79
235 236 3.447586 CAGTGGGAGGAAATACTCTTCGA 59.552 47.826 0.00 0.00 37.63 3.71
236 237 3.447944 AGTGGGAGGAAATACTCTTCGAC 59.552 47.826 0.00 0.00 37.63 4.20
237 238 3.194968 GTGGGAGGAAATACTCTTCGACA 59.805 47.826 0.00 0.00 37.63 4.35
238 239 3.835978 TGGGAGGAAATACTCTTCGACAA 59.164 43.478 0.00 0.00 37.63 3.18
239 240 4.469945 TGGGAGGAAATACTCTTCGACAAT 59.530 41.667 0.00 0.00 37.63 2.71
240 241 4.811557 GGGAGGAAATACTCTTCGACAATG 59.188 45.833 0.00 0.00 37.63 2.82
241 242 4.271291 GGAGGAAATACTCTTCGACAATGC 59.729 45.833 0.00 0.00 37.63 3.56
242 243 4.192317 AGGAAATACTCTTCGACAATGCC 58.808 43.478 0.00 0.00 0.00 4.40
243 244 3.312697 GGAAATACTCTTCGACAATGCCC 59.687 47.826 0.00 0.00 0.00 5.36
244 245 3.914426 AATACTCTTCGACAATGCCCT 57.086 42.857 0.00 0.00 0.00 5.19
245 246 2.961526 TACTCTTCGACAATGCCCTC 57.038 50.000 0.00 0.00 0.00 4.30
246 247 0.250513 ACTCTTCGACAATGCCCTCC 59.749 55.000 0.00 0.00 0.00 4.30
247 248 0.250234 CTCTTCGACAATGCCCTCCA 59.750 55.000 0.00 0.00 0.00 3.86
248 249 0.690192 TCTTCGACAATGCCCTCCAA 59.310 50.000 0.00 0.00 0.00 3.53
249 250 1.089920 CTTCGACAATGCCCTCCAAG 58.910 55.000 0.00 0.00 0.00 3.61
250 251 0.322456 TTCGACAATGCCCTCCAAGG 60.322 55.000 0.00 0.00 34.30 3.61
251 252 1.198094 TCGACAATGCCCTCCAAGGA 61.198 55.000 0.00 0.00 37.67 3.36
252 253 0.322456 CGACAATGCCCTCCAAGGAA 60.322 55.000 0.00 0.00 37.67 3.36
253 254 1.177401 GACAATGCCCTCCAAGGAAC 58.823 55.000 0.00 0.00 37.67 3.62
254 255 0.482446 ACAATGCCCTCCAAGGAACA 59.518 50.000 0.00 0.00 37.67 3.18
255 256 1.077663 ACAATGCCCTCCAAGGAACAT 59.922 47.619 0.00 0.00 37.67 2.71
256 257 1.753073 CAATGCCCTCCAAGGAACATC 59.247 52.381 0.00 0.00 37.67 3.06
257 258 1.002069 ATGCCCTCCAAGGAACATCA 58.998 50.000 0.00 0.00 37.67 3.07
258 259 0.038166 TGCCCTCCAAGGAACATCAC 59.962 55.000 0.00 0.00 37.67 3.06
259 260 0.681243 GCCCTCCAAGGAACATCACC 60.681 60.000 0.00 0.00 37.67 4.02
260 261 0.392998 CCCTCCAAGGAACATCACCG 60.393 60.000 0.00 0.00 37.67 4.94
261 262 0.392998 CCTCCAAGGAACATCACCGG 60.393 60.000 0.00 0.00 37.67 5.28
262 263 1.002624 TCCAAGGAACATCACCGGC 60.003 57.895 0.00 0.00 0.00 6.13
263 264 1.303236 CCAAGGAACATCACCGGCA 60.303 57.895 0.00 0.00 0.00 5.69
264 265 0.893270 CCAAGGAACATCACCGGCAA 60.893 55.000 0.00 0.00 0.00 4.52
265 266 0.240945 CAAGGAACATCACCGGCAAC 59.759 55.000 0.00 0.00 0.00 4.17
282 283 2.738480 CGACCCCCGTGAAGAACA 59.262 61.111 0.00 0.00 0.00 3.18
283 284 1.070105 CGACCCCCGTGAAGAACAA 59.930 57.895 0.00 0.00 0.00 2.83
284 285 0.949105 CGACCCCCGTGAAGAACAAG 60.949 60.000 0.00 0.00 0.00 3.16
285 286 0.605589 GACCCCCGTGAAGAACAAGG 60.606 60.000 0.00 0.00 45.38 3.61
286 287 1.971695 CCCCCGTGAAGAACAAGGC 60.972 63.158 0.00 0.00 44.66 4.35
287 288 1.073199 CCCCGTGAAGAACAAGGCT 59.927 57.895 0.00 0.00 44.66 4.58
288 289 0.537371 CCCCGTGAAGAACAAGGCTT 60.537 55.000 0.00 0.00 44.66 4.35
289 290 1.318576 CCCGTGAAGAACAAGGCTTT 58.681 50.000 0.00 0.00 44.66 3.51
290 291 1.266989 CCCGTGAAGAACAAGGCTTTC 59.733 52.381 0.00 0.00 44.66 2.62
291 292 1.069906 CCGTGAAGAACAAGGCTTTCG 60.070 52.381 0.00 0.00 40.77 3.46
292 293 1.660333 CGTGAAGAACAAGGCTTTCGC 60.660 52.381 0.00 0.00 0.00 4.70
293 294 1.604278 GTGAAGAACAAGGCTTTCGCT 59.396 47.619 0.00 0.00 36.09 4.93
294 295 1.873591 TGAAGAACAAGGCTTTCGCTC 59.126 47.619 0.00 0.00 36.09 5.03
295 296 1.873591 GAAGAACAAGGCTTTCGCTCA 59.126 47.619 0.00 0.00 36.09 4.26
296 297 2.191128 AGAACAAGGCTTTCGCTCAT 57.809 45.000 0.00 0.00 36.09 2.90
297 298 2.508526 AGAACAAGGCTTTCGCTCATT 58.491 42.857 0.00 0.00 36.09 2.57
298 299 2.887152 AGAACAAGGCTTTCGCTCATTT 59.113 40.909 0.00 0.00 36.09 2.32
299 300 2.997485 ACAAGGCTTTCGCTCATTTC 57.003 45.000 0.00 0.00 36.09 2.17
300 301 1.541588 ACAAGGCTTTCGCTCATTTCC 59.458 47.619 0.00 0.00 36.09 3.13
301 302 0.804989 AAGGCTTTCGCTCATTTCCG 59.195 50.000 0.00 0.00 36.09 4.30
302 303 1.226407 GGCTTTCGCTCATTTCCGC 60.226 57.895 0.00 0.00 36.09 5.54
303 304 1.226407 GCTTTCGCTCATTTCCGCC 60.226 57.895 0.00 0.00 0.00 6.13
304 305 1.648467 GCTTTCGCTCATTTCCGCCT 61.648 55.000 0.00 0.00 0.00 5.52
305 306 0.375106 CTTTCGCTCATTTCCGCCTC 59.625 55.000 0.00 0.00 0.00 4.70
306 307 1.358725 TTTCGCTCATTTCCGCCTCG 61.359 55.000 0.00 0.00 0.00 4.63
307 308 3.929948 CGCTCATTTCCGCCTCGC 61.930 66.667 0.00 0.00 0.00 5.03
308 309 3.577313 GCTCATTTCCGCCTCGCC 61.577 66.667 0.00 0.00 0.00 5.54
309 310 2.125147 CTCATTTCCGCCTCGCCA 60.125 61.111 0.00 0.00 0.00 5.69
310 311 2.435938 TCATTTCCGCCTCGCCAC 60.436 61.111 0.00 0.00 0.00 5.01
311 312 3.508840 CATTTCCGCCTCGCCACC 61.509 66.667 0.00 0.00 0.00 4.61
312 313 3.717294 ATTTCCGCCTCGCCACCT 61.717 61.111 0.00 0.00 0.00 4.00
313 314 3.682292 ATTTCCGCCTCGCCACCTC 62.682 63.158 0.00 0.00 0.00 3.85
317 318 4.803426 CGCCTCGCCACCTCTGAC 62.803 72.222 0.00 0.00 0.00 3.51
318 319 3.386237 GCCTCGCCACCTCTGACT 61.386 66.667 0.00 0.00 0.00 3.41
319 320 2.888863 CCTCGCCACCTCTGACTC 59.111 66.667 0.00 0.00 0.00 3.36
320 321 1.979155 CCTCGCCACCTCTGACTCA 60.979 63.158 0.00 0.00 0.00 3.41
321 322 1.510383 CTCGCCACCTCTGACTCAG 59.490 63.158 0.00 0.00 0.00 3.35
322 323 1.943116 CTCGCCACCTCTGACTCAGG 61.943 65.000 6.20 0.00 37.03 3.86
323 324 2.985456 GCCACCTCTGACTCAGGG 59.015 66.667 6.20 2.29 35.01 4.45
324 325 1.915769 GCCACCTCTGACTCAGGGT 60.916 63.158 5.17 8.85 36.16 4.34
325 326 0.614979 GCCACCTCTGACTCAGGGTA 60.615 60.000 15.15 0.00 34.79 3.69
326 327 1.479709 CCACCTCTGACTCAGGGTAG 58.520 60.000 15.15 7.82 34.79 3.18
327 328 1.479709 CACCTCTGACTCAGGGTAGG 58.520 60.000 15.15 12.54 34.79 3.18
328 329 1.006043 CACCTCTGACTCAGGGTAGGA 59.994 57.143 15.92 0.00 34.79 2.94
329 330 1.286553 ACCTCTGACTCAGGGTAGGAG 59.713 57.143 15.92 2.53 34.79 3.69
330 331 1.398692 CTCTGACTCAGGGTAGGAGC 58.601 60.000 6.20 0.00 35.79 4.70
331 332 0.033011 TCTGACTCAGGGTAGGAGCC 60.033 60.000 6.20 0.00 35.79 4.70
345 346 2.511600 AGCCCCGCTCGAATTTCG 60.512 61.111 12.54 12.54 42.10 3.46
349 350 1.488261 CCCCGCTCGAATTTCGTAGC 61.488 60.000 22.28 22.28 41.35 3.58
361 362 4.471726 CGTAGCGCGAACCGGACT 62.472 66.667 12.10 0.00 44.77 3.85
366 367 4.796231 CGCGAACCGGACTGGAGG 62.796 72.222 9.46 0.00 42.00 4.30
374 375 0.036294 CCGGACTGGAGGAAAAGGAC 60.036 60.000 0.00 0.00 42.00 3.85
375 376 0.036294 CGGACTGGAGGAAAAGGACC 60.036 60.000 0.00 0.00 0.00 4.46
376 377 0.328592 GGACTGGAGGAAAAGGACCC 59.671 60.000 0.00 0.00 0.00 4.46
377 378 0.328592 GACTGGAGGAAAAGGACCCC 59.671 60.000 0.00 0.00 0.00 4.95
378 379 0.402861 ACTGGAGGAAAAGGACCCCA 60.403 55.000 0.00 0.00 0.00 4.96
379 380 0.038310 CTGGAGGAAAAGGACCCCAC 59.962 60.000 0.00 0.00 0.00 4.61
380 381 1.002502 GGAGGAAAAGGACCCCACG 60.003 63.158 0.00 0.00 0.00 4.94
381 382 1.002502 GAGGAAAAGGACCCCACGG 60.003 63.158 0.00 0.00 0.00 4.94
416 423 4.451096 CCATGGTGTACTACTTGTGTTGAC 59.549 45.833 2.57 0.00 0.00 3.18
419 426 2.473984 GTGTACTACTTGTGTTGACGCC 59.526 50.000 0.00 0.00 0.00 5.68
438 445 2.127232 GGCACCAGCACAAACCACT 61.127 57.895 0.00 0.00 44.61 4.00
444 451 0.173029 CAGCACAAACCACTGCAACA 59.827 50.000 0.00 0.00 35.73 3.33
464 471 3.423154 GCTCCGGAAGCCACAACG 61.423 66.667 5.23 0.00 45.92 4.10
465 472 2.030562 CTCCGGAAGCCACAACGT 59.969 61.111 5.23 0.00 0.00 3.99
468 475 4.072088 CGGAAGCCACAACGTCGC 62.072 66.667 0.00 0.00 0.00 5.19
469 476 2.970324 GGAAGCCACAACGTCGCA 60.970 61.111 0.00 0.00 0.00 5.10
475 482 2.594962 CCACAACGTCGCACCACTC 61.595 63.158 0.00 0.00 0.00 3.51
476 483 1.880796 CACAACGTCGCACCACTCA 60.881 57.895 0.00 0.00 0.00 3.41
478 485 2.279918 AACGTCGCACCACTCACC 60.280 61.111 0.00 0.00 0.00 4.02
479 486 4.640855 ACGTCGCACCACTCACCG 62.641 66.667 0.00 0.00 0.00 4.94
485 492 2.981560 GCACCACTCACCGCCATTG 61.982 63.158 0.00 0.00 0.00 2.82
486 493 2.672996 ACCACTCACCGCCATTGC 60.673 61.111 0.00 0.00 0.00 3.56
487 494 2.360350 CCACTCACCGCCATTGCT 60.360 61.111 0.00 0.00 34.43 3.91
488 495 2.693762 CCACTCACCGCCATTGCTG 61.694 63.158 0.00 0.00 34.43 4.41
490 497 3.818787 CTCACCGCCATTGCTGCC 61.819 66.667 0.00 0.00 34.43 4.85
528 536 0.742281 CAGCGCCACTGCTAGACAAT 60.742 55.000 2.29 0.00 45.23 2.71
531 539 1.756375 CGCCACTGCTAGACAATCGC 61.756 60.000 0.00 0.00 34.43 4.58
532 540 0.740868 GCCACTGCTAGACAATCGCA 60.741 55.000 0.00 0.00 33.53 5.10
536 544 1.208052 ACTGCTAGACAATCGCACCAT 59.792 47.619 0.00 0.00 0.00 3.55
539 547 0.940126 CTAGACAATCGCACCATGCC 59.060 55.000 0.00 0.00 41.12 4.40
541 549 0.608856 AGACAATCGCACCATGCCAA 60.609 50.000 0.00 0.00 41.12 4.52
543 551 1.514657 CAATCGCACCATGCCAACG 60.515 57.895 0.00 0.00 41.12 4.10
544 552 2.699768 AATCGCACCATGCCAACGG 61.700 57.895 0.00 0.00 41.12 4.44
545 553 3.918253 ATCGCACCATGCCAACGGT 62.918 57.895 0.00 0.00 41.12 4.83
546 554 4.101790 CGCACCATGCCAACGGTC 62.102 66.667 0.00 0.00 41.12 4.79
547 555 2.672996 GCACCATGCCAACGGTCT 60.673 61.111 0.00 0.00 37.42 3.85
548 556 2.981560 GCACCATGCCAACGGTCTG 61.982 63.158 0.00 0.00 37.42 3.51
549 557 2.672996 ACCATGCCAACGGTCTGC 60.673 61.111 0.00 0.00 0.00 4.26
550 558 2.672651 CCATGCCAACGGTCTGCA 60.673 61.111 6.94 6.94 39.68 4.41
551 559 2.562912 CATGCCAACGGTCTGCAC 59.437 61.111 6.67 0.00 37.92 4.57
552 560 2.112928 ATGCCAACGGTCTGCACA 59.887 55.556 6.67 0.00 37.92 4.57
553 561 1.528076 ATGCCAACGGTCTGCACAA 60.528 52.632 6.67 0.00 37.92 3.33
554 562 1.106351 ATGCCAACGGTCTGCACAAA 61.106 50.000 6.67 0.00 37.92 2.83
555 563 1.315981 TGCCAACGGTCTGCACAAAA 61.316 50.000 0.94 0.00 0.00 2.44
556 564 0.869880 GCCAACGGTCTGCACAAAAC 60.870 55.000 0.00 0.00 0.00 2.43
558 566 0.591236 CAACGGTCTGCACAAAACGG 60.591 55.000 2.02 0.00 0.00 4.44
559 567 0.745128 AACGGTCTGCACAAAACGGA 60.745 50.000 2.02 0.00 0.00 4.69
562 570 0.521735 GGTCTGCACAAAACGGATCC 59.478 55.000 0.00 0.00 0.00 3.36
563 571 0.165944 GTCTGCACAAAACGGATCCG 59.834 55.000 32.20 32.20 46.03 4.18
564 572 0.953471 TCTGCACAAAACGGATCCGG 60.953 55.000 35.87 21.24 44.69 5.14
565 573 1.922135 CTGCACAAAACGGATCCGGG 61.922 60.000 35.87 23.68 44.69 5.73
566 574 2.874751 CACAAAACGGATCCGGGC 59.125 61.111 35.87 0.00 44.69 6.13
567 575 2.744709 ACAAAACGGATCCGGGCG 60.745 61.111 35.87 22.97 44.69 6.13
568 576 2.435234 CAAAACGGATCCGGGCGA 60.435 61.111 35.87 0.00 44.69 5.54
569 577 1.817941 CAAAACGGATCCGGGCGAT 60.818 57.895 35.87 13.89 44.69 4.58
570 578 0.531090 CAAAACGGATCCGGGCGATA 60.531 55.000 35.87 0.00 44.69 2.92
571 579 0.249741 AAAACGGATCCGGGCGATAG 60.250 55.000 35.87 8.28 44.69 2.08
594 602 3.753272 CACCCACTGTGTTTCTCTATTGG 59.247 47.826 7.08 0.00 40.26 3.16
595 603 3.650942 ACCCACTGTGTTTCTCTATTGGA 59.349 43.478 7.08 0.00 0.00 3.53
596 604 4.104102 ACCCACTGTGTTTCTCTATTGGAA 59.896 41.667 7.08 0.00 0.00 3.53
597 605 4.697352 CCCACTGTGTTTCTCTATTGGAAG 59.303 45.833 7.08 0.00 0.00 3.46
598 606 4.154918 CCACTGTGTTTCTCTATTGGAAGC 59.845 45.833 7.08 0.00 0.00 3.86
599 607 4.756642 CACTGTGTTTCTCTATTGGAAGCA 59.243 41.667 0.00 0.00 32.98 3.91
600 608 5.413833 CACTGTGTTTCTCTATTGGAAGCAT 59.586 40.000 0.00 0.00 36.59 3.79
601 609 6.006449 ACTGTGTTTCTCTATTGGAAGCATT 58.994 36.000 0.00 0.00 36.59 3.56
604 612 6.265196 TGTGTTTCTCTATTGGAAGCATTGTT 59.735 34.615 0.00 0.00 36.59 2.83
605 613 7.147976 GTGTTTCTCTATTGGAAGCATTGTTT 58.852 34.615 0.00 0.00 36.59 2.83
606 614 7.653311 GTGTTTCTCTATTGGAAGCATTGTTTT 59.347 33.333 0.00 0.00 36.59 2.43
632 640 5.404466 TTTGAAGGGTATTGGAAGCATTG 57.596 39.130 0.00 0.00 0.00 2.82
634 642 4.415596 TGAAGGGTATTGGAAGCATTGTT 58.584 39.130 0.00 0.00 0.00 2.83
639 647 4.020662 GGGTATTGGAAGCATTGTTTTGGA 60.021 41.667 0.00 0.00 0.00 3.53
640 648 5.170748 GGTATTGGAAGCATTGTTTTGGAG 58.829 41.667 0.00 0.00 0.00 3.86
641 649 5.047377 GGTATTGGAAGCATTGTTTTGGAGA 60.047 40.000 0.00 0.00 0.00 3.71
642 650 4.320608 TTGGAAGCATTGTTTTGGAGAC 57.679 40.909 0.00 0.00 0.00 3.36
643 651 3.295093 TGGAAGCATTGTTTTGGAGACA 58.705 40.909 0.00 0.00 39.83 3.41
645 653 4.240096 GGAAGCATTGTTTTGGAGACATG 58.760 43.478 0.00 0.00 42.32 3.21
646 654 3.947910 AGCATTGTTTTGGAGACATGG 57.052 42.857 0.00 0.00 42.32 3.66
647 655 2.028748 AGCATTGTTTTGGAGACATGGC 60.029 45.455 0.00 0.00 42.32 4.40
648 656 2.028748 GCATTGTTTTGGAGACATGGCT 60.029 45.455 0.00 0.00 42.32 4.75
649 657 3.555586 GCATTGTTTTGGAGACATGGCTT 60.556 43.478 0.41 0.00 42.32 4.35
650 658 3.731652 TTGTTTTGGAGACATGGCTTG 57.268 42.857 0.41 0.00 42.32 4.01
651 659 1.962807 TGTTTTGGAGACATGGCTTGG 59.037 47.619 0.41 0.00 42.32 3.61
653 661 2.205022 TTTGGAGACATGGCTTGGAG 57.795 50.000 0.41 0.00 42.32 3.86
655 663 0.842030 TGGAGACATGGCTTGGAGGT 60.842 55.000 0.41 0.00 33.40 3.85
656 664 0.329596 GGAGACATGGCTTGGAGGTT 59.670 55.000 0.41 0.00 0.00 3.50
657 665 1.272147 GGAGACATGGCTTGGAGGTTT 60.272 52.381 0.41 0.00 0.00 3.27
679 734 0.383949 TTTGCGTTCCTTTGGTGCTC 59.616 50.000 0.00 0.00 0.00 4.26
682 737 2.954611 GTTCCTTTGGTGCTCGCC 59.045 61.111 0.00 0.00 0.00 5.54
691 746 2.240500 GGTGCTCGCCGCTATTCTG 61.241 63.158 0.00 0.00 40.11 3.02
694 749 2.815308 CTCGCCGCTATTCTGGGT 59.185 61.111 0.00 0.00 0.00 4.51
696 751 1.153449 TCGCCGCTATTCTGGGTTG 60.153 57.895 0.00 0.00 0.00 3.77
699 754 0.733150 GCCGCTATTCTGGGTTGTTC 59.267 55.000 0.00 0.00 0.00 3.18
700 755 1.948611 GCCGCTATTCTGGGTTGTTCA 60.949 52.381 0.00 0.00 0.00 3.18
701 756 2.643551 CCGCTATTCTGGGTTGTTCAT 58.356 47.619 0.00 0.00 0.00 2.57
703 758 3.270027 CGCTATTCTGGGTTGTTCATCA 58.730 45.455 0.00 0.00 0.00 3.07
704 759 3.689161 CGCTATTCTGGGTTGTTCATCAA 59.311 43.478 0.00 0.00 0.00 2.57
705 760 4.201851 CGCTATTCTGGGTTGTTCATCAAG 60.202 45.833 0.00 0.00 36.66 3.02
706 761 4.096984 GCTATTCTGGGTTGTTCATCAAGG 59.903 45.833 0.00 0.00 36.66 3.61
707 762 2.584835 TCTGGGTTGTTCATCAAGGG 57.415 50.000 0.00 0.00 36.66 3.95
708 763 1.780309 TCTGGGTTGTTCATCAAGGGT 59.220 47.619 0.00 0.00 36.66 4.34
709 764 1.888512 CTGGGTTGTTCATCAAGGGTG 59.111 52.381 0.00 0.00 36.66 4.61
710 765 0.603065 GGGTTGTTCATCAAGGGTGC 59.397 55.000 0.00 0.00 36.66 5.01
711 766 1.620822 GGTTGTTCATCAAGGGTGCT 58.379 50.000 0.00 0.00 36.66 4.40
713 768 3.356290 GGTTGTTCATCAAGGGTGCTAT 58.644 45.455 0.00 0.00 36.66 2.97
714 769 3.129287 GGTTGTTCATCAAGGGTGCTATG 59.871 47.826 0.00 0.00 36.66 2.23
716 771 3.346315 TGTTCATCAAGGGTGCTATGTG 58.654 45.455 0.00 0.00 0.00 3.21
722 836 1.082954 AGGGTGCTATGTGGTCCCT 59.917 57.895 0.00 0.00 43.03 4.20
735 849 0.324830 GGTCCCTGTCAGTCCTAGCT 60.325 60.000 0.00 0.00 0.00 3.32
756 870 7.715265 AGCTTGTGTATTCCGTTATTATCAG 57.285 36.000 0.00 0.00 0.00 2.90
779 893 5.360714 AGCAACGTGATGGAATTATTTGGAT 59.639 36.000 0.00 0.00 0.00 3.41
797 911 2.553028 GGATGGTGAAGAAAGAGGCACA 60.553 50.000 0.00 0.00 33.09 4.57
854 968 2.914289 CCTCCAGCCATGACCTCC 59.086 66.667 0.00 0.00 0.00 4.30
868 982 1.464997 GACCTCCAAATGACTTGACGC 59.535 52.381 0.00 0.00 37.17 5.19
928 1042 2.332514 GACACGACCGTCGACCAA 59.667 61.111 27.03 0.00 43.74 3.67
931 1045 2.908940 ACGACCGTCGACCAACCT 60.909 61.111 27.03 0.00 43.74 3.50
933 1047 2.737376 GACCGTCGACCAACCTGC 60.737 66.667 10.58 0.00 0.00 4.85
938 1052 3.998672 TCGACCAACCTGCCCGTC 61.999 66.667 0.00 0.00 0.00 4.79
1014 1146 2.124151 GCCATGGGGAAGCACGAT 60.124 61.111 15.13 0.00 35.59 3.73
1024 1156 0.320771 GAAGCACGATCACCACCACT 60.321 55.000 0.00 0.00 0.00 4.00
1175 1313 2.047274 CGCCATGAACCTCACCGT 60.047 61.111 0.00 0.00 0.00 4.83
1208 1346 4.787280 CCTCCTCTCCCGCACCCT 62.787 72.222 0.00 0.00 0.00 4.34
1287 1436 2.597305 CTGCTTCGCTTTTCATTCATGC 59.403 45.455 0.00 0.00 0.00 4.06
1288 1437 1.922545 GCTTCGCTTTTCATTCATGCC 59.077 47.619 0.00 0.00 0.00 4.40
1291 1440 4.675146 GCTTCGCTTTTCATTCATGCCTAA 60.675 41.667 0.00 0.00 0.00 2.69
1292 1441 5.581126 TTCGCTTTTCATTCATGCCTAAT 57.419 34.783 0.00 0.00 0.00 1.73
1356 1511 1.694150 GATGCTGCCCATGGTCTACTA 59.306 52.381 11.73 0.00 33.29 1.82
1379 1534 0.534203 GAAGAAGCACCCGGTGAACA 60.534 55.000 22.37 0.00 35.23 3.18
1498 1653 2.394912 CTCGTCGTCGTCGTCTCC 59.605 66.667 11.41 0.00 38.33 3.71
1798 1953 1.370437 CATCCTCATGGCCCTCGAG 59.630 63.158 5.13 5.13 0.00 4.04
1820 1975 0.248661 CGCCGACTGATCTTGATCGT 60.249 55.000 6.19 6.89 32.70 3.73
1834 1989 1.009829 GATCGTAGCAAACCAGCCAG 58.990 55.000 0.00 0.00 34.23 4.85
1846 2001 1.279271 ACCAGCCAGACCTAACATGAC 59.721 52.381 0.00 0.00 0.00 3.06
1905 2072 9.175312 CTAGATACCGTATGTAGATTACCATGT 57.825 37.037 14.76 0.00 34.84 3.21
1933 2100 3.990092 AGTCATTACGTGCTCTCAACAA 58.010 40.909 0.00 0.00 0.00 2.83
1962 2146 7.944729 AACAGAAATGTAGTATTGCCAATCT 57.055 32.000 0.00 0.00 0.00 2.40
1963 2147 7.559590 ACAGAAATGTAGTATTGCCAATCTC 57.440 36.000 0.00 0.00 0.00 2.75
1978 2162 5.933463 TGCCAATCTCCAATCAACATTTTTC 59.067 36.000 0.00 0.00 0.00 2.29
1979 2163 5.933463 GCCAATCTCCAATCAACATTTTTCA 59.067 36.000 0.00 0.00 0.00 2.69
1983 2167 5.953183 TCTCCAATCAACATTTTTCATCGG 58.047 37.500 0.00 0.00 0.00 4.18
1987 2171 5.468592 CAATCAACATTTTTCATCGGGACA 58.531 37.500 0.00 0.00 0.00 4.02
1993 2177 5.229423 ACATTTTTCATCGGGACAAACATG 58.771 37.500 0.00 0.00 0.00 3.21
1994 2178 5.010516 ACATTTTTCATCGGGACAAACATGA 59.989 36.000 0.00 0.00 0.00 3.07
1995 2179 5.521906 TTTTTCATCGGGACAAACATGAA 57.478 34.783 0.00 0.00 0.00 2.57
1997 2181 2.083774 TCATCGGGACAAACATGAAGC 58.916 47.619 0.00 0.00 0.00 3.86
2014 2200 1.376543 AGCGATCATCAACAAGCCAG 58.623 50.000 0.00 0.00 0.00 4.85
2046 2232 3.924114 TCAACACCAAACTCTCAAGGA 57.076 42.857 0.00 0.00 0.00 3.36
2057 2243 6.151817 CCAAACTCTCAAGGAAAAAGGGATAG 59.848 42.308 0.00 0.00 0.00 2.08
2109 2296 0.378962 TCGTTTGTCAAACAAGCCCG 59.621 50.000 24.40 12.03 39.53 6.13
2196 2383 2.400399 CACAAAGTTGCCAGCATCAAG 58.600 47.619 3.71 0.00 0.00 3.02
2225 2412 4.274950 CAGTTAACTGTTTACACCCACTGG 59.725 45.833 24.70 0.00 39.09 4.00
2233 2421 0.470766 TACACCCACTGGAACACACC 59.529 55.000 0.00 0.00 34.81 4.16
2290 2478 8.146053 TCTTCTTCAGGTCCTTCATATTTGTA 57.854 34.615 0.00 0.00 0.00 2.41
2317 2505 3.999663 CCACACTGGCAAAAGAACAAAAA 59.000 39.130 0.00 0.00 0.00 1.94
2385 2574 8.439172 TGATTTTCATCAGATGTATACATGGGA 58.561 33.333 22.93 18.23 33.87 4.37
2386 2575 9.288576 GATTTTCATCAGATGTATACATGGGAA 57.711 33.333 22.93 14.20 36.57 3.97
2387 2576 9.645128 ATTTTCATCAGATGTATACATGGGAAA 57.355 29.630 22.93 18.14 36.57 3.13
2388 2577 9.473007 TTTTCATCAGATGTATACATGGGAAAA 57.527 29.630 22.93 21.58 36.57 2.29
2389 2578 8.681486 TTCATCAGATGTATACATGGGAAAAG 57.319 34.615 22.93 12.79 36.57 2.27
2390 2579 8.033178 TCATCAGATGTATACATGGGAAAAGA 57.967 34.615 22.93 14.43 36.57 2.52
2391 2580 8.152898 TCATCAGATGTATACATGGGAAAAGAG 58.847 37.037 22.93 8.95 36.57 2.85
2395 2584 9.347240 CAGATGTATACATGGGAAAAGAGAAAT 57.653 33.333 22.93 0.00 36.57 2.17
2478 2669 6.811253 AACTTTGTTATTGCCTCGATACAA 57.189 33.333 3.08 3.08 0.00 2.41
2493 2684 6.074088 CCTCGATACAATAATGACTCTTGCAC 60.074 42.308 0.00 0.00 0.00 4.57
2534 2725 7.669722 TGCTAAAATAATGACTCTTTCACCCTT 59.330 33.333 0.00 0.00 36.92 3.95
2537 2728 7.693969 AAATAATGACTCTTTCACCCTTCAG 57.306 36.000 0.00 0.00 36.92 3.02
2554 2750 8.244113 CACCCTTCAGTTATCTTTCCAAAATAC 58.756 37.037 0.00 0.00 0.00 1.89
2555 2751 8.170730 ACCCTTCAGTTATCTTTCCAAAATACT 58.829 33.333 0.00 0.00 0.00 2.12
2592 2958 3.834489 AATGGTTGGATTGTTGTGCAA 57.166 38.095 0.00 0.00 41.89 4.08
2596 2962 3.055530 TGGTTGGATTGTTGTGCAACTTT 60.056 39.130 14.97 3.88 45.97 2.66
2606 2972 6.371809 TGTTGTGCAACTTTAGGAACTAAG 57.628 37.500 14.97 0.00 44.14 2.18
2636 3009 4.284829 TGGCACAACTAATCACAGATCA 57.715 40.909 0.00 0.00 31.92 2.92
2654 3027 2.256306 TCACCCACAATCTGAGCAGTA 58.744 47.619 0.00 0.00 0.00 2.74
2662 3035 4.328440 CACAATCTGAGCAGTACAGCTAAC 59.672 45.833 13.28 2.38 46.75 2.34
2665 3038 3.421844 TCTGAGCAGTACAGCTAACAGA 58.578 45.455 20.75 20.75 46.75 3.41
2668 3041 3.254892 GAGCAGTACAGCTAACAGAACC 58.745 50.000 13.28 0.00 46.75 3.62
2670 3043 3.071023 AGCAGTACAGCTAACAGAACCAA 59.929 43.478 11.54 0.00 44.50 3.67
2705 3123 0.604243 ACGTGGTTCCATAAAGCGCA 60.604 50.000 11.47 0.00 44.25 6.09
2771 3189 3.069586 CGATAAACATAGTCAGGCTGGGA 59.930 47.826 15.73 0.13 0.00 4.37
2774 3192 2.180946 ACATAGTCAGGCTGGGATGA 57.819 50.000 22.50 0.91 0.00 2.92
2776 3194 1.764723 CATAGTCAGGCTGGGATGACA 59.235 52.381 15.73 0.00 46.63 3.58
2806 3224 6.896883 AGGGGTTATAAGAATCAGGTAACAC 58.103 40.000 0.00 0.00 41.41 3.32
2807 3225 6.677076 AGGGGTTATAAGAATCAGGTAACACT 59.323 38.462 0.00 0.00 41.41 3.55
2808 3226 6.766467 GGGGTTATAAGAATCAGGTAACACTG 59.234 42.308 0.00 0.00 39.84 3.66
2809 3227 6.260271 GGGTTATAAGAATCAGGTAACACTGC 59.740 42.308 0.00 0.00 38.36 4.40
2810 3228 6.821665 GGTTATAAGAATCAGGTAACACTGCA 59.178 38.462 0.00 0.00 38.36 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.354337 CGCTATCATCGCCAATCCGG 61.354 60.000 0.00 0.00 38.11 5.14
1 2 1.354337 CCGCTATCATCGCCAATCCG 61.354 60.000 0.00 0.00 0.00 4.18
2 3 1.639298 GCCGCTATCATCGCCAATCC 61.639 60.000 0.00 0.00 0.00 3.01
3 4 0.950555 TGCCGCTATCATCGCCAATC 60.951 55.000 0.00 0.00 0.00 2.67
4 5 0.321919 ATGCCGCTATCATCGCCAAT 60.322 50.000 0.00 0.00 0.00 3.16
5 6 0.950555 GATGCCGCTATCATCGCCAA 60.951 55.000 0.00 0.00 32.14 4.52
6 7 1.374631 GATGCCGCTATCATCGCCA 60.375 57.895 0.00 0.00 32.14 5.69
7 8 0.950555 TTGATGCCGCTATCATCGCC 60.951 55.000 6.40 0.00 42.32 5.54
8 9 1.081892 ATTGATGCCGCTATCATCGC 58.918 50.000 6.40 0.00 42.32 4.58
9 10 2.800694 CATTGATGCCGCTATCATCG 57.199 50.000 6.40 0.00 42.32 3.84
32 33 0.478072 TCCTGCCTGCTCCTCAAAAA 59.522 50.000 0.00 0.00 0.00 1.94
33 34 0.037303 CTCCTGCCTGCTCCTCAAAA 59.963 55.000 0.00 0.00 0.00 2.44
34 35 0.837691 TCTCCTGCCTGCTCCTCAAA 60.838 55.000 0.00 0.00 0.00 2.69
35 36 0.619832 ATCTCCTGCCTGCTCCTCAA 60.620 55.000 0.00 0.00 0.00 3.02
36 37 1.002662 ATCTCCTGCCTGCTCCTCA 59.997 57.895 0.00 0.00 0.00 3.86
37 38 0.760189 AGATCTCCTGCCTGCTCCTC 60.760 60.000 0.00 0.00 0.00 3.71
38 39 1.049855 CAGATCTCCTGCCTGCTCCT 61.050 60.000 0.00 0.00 35.89 3.69
39 40 1.047596 TCAGATCTCCTGCCTGCTCC 61.048 60.000 0.00 0.00 42.62 4.70
40 41 1.050204 ATCAGATCTCCTGCCTGCTC 58.950 55.000 0.00 0.00 42.62 4.26
41 42 1.509373 AATCAGATCTCCTGCCTGCT 58.491 50.000 0.00 0.00 42.62 4.24
42 43 2.220313 GAAATCAGATCTCCTGCCTGC 58.780 52.381 0.00 0.00 42.62 4.85
43 44 3.555527 TGAAATCAGATCTCCTGCCTG 57.444 47.619 0.00 0.00 42.62 4.85
44 45 4.792513 AATGAAATCAGATCTCCTGCCT 57.207 40.909 0.00 0.00 42.62 4.75
45 46 6.294473 TCTAAATGAAATCAGATCTCCTGCC 58.706 40.000 0.00 0.00 42.62 4.85
46 47 7.798596 TTCTAAATGAAATCAGATCTCCTGC 57.201 36.000 0.00 0.00 42.62 4.85
47 48 8.838365 CCTTTCTAAATGAAATCAGATCTCCTG 58.162 37.037 0.00 0.00 42.96 3.86
48 49 8.776119 TCCTTTCTAAATGAAATCAGATCTCCT 58.224 33.333 0.00 0.00 42.96 3.69
49 50 8.970859 TCCTTTCTAAATGAAATCAGATCTCC 57.029 34.615 0.00 0.00 42.96 3.71
64 65 8.780249 CCGACTTAGTGATTTTTCCTTTCTAAA 58.220 33.333 0.00 0.00 0.00 1.85
65 66 7.935210 ACCGACTTAGTGATTTTTCCTTTCTAA 59.065 33.333 0.00 0.00 0.00 2.10
66 67 7.447594 ACCGACTTAGTGATTTTTCCTTTCTA 58.552 34.615 0.00 0.00 0.00 2.10
67 68 6.296803 ACCGACTTAGTGATTTTTCCTTTCT 58.703 36.000 0.00 0.00 0.00 2.52
68 69 6.555812 ACCGACTTAGTGATTTTTCCTTTC 57.444 37.500 0.00 0.00 0.00 2.62
69 70 6.734871 GCAACCGACTTAGTGATTTTTCCTTT 60.735 38.462 0.00 0.00 0.00 3.11
70 71 5.278315 GCAACCGACTTAGTGATTTTTCCTT 60.278 40.000 0.00 0.00 0.00 3.36
71 72 4.215613 GCAACCGACTTAGTGATTTTTCCT 59.784 41.667 0.00 0.00 0.00 3.36
72 73 4.215613 AGCAACCGACTTAGTGATTTTTCC 59.784 41.667 0.00 0.00 0.00 3.13
73 74 5.358298 AGCAACCGACTTAGTGATTTTTC 57.642 39.130 0.00 0.00 0.00 2.29
74 75 5.767816 AAGCAACCGACTTAGTGATTTTT 57.232 34.783 0.00 0.00 0.00 1.94
75 76 5.767816 AAAGCAACCGACTTAGTGATTTT 57.232 34.783 0.00 0.00 0.00 1.82
76 77 8.556213 TTATAAAGCAACCGACTTAGTGATTT 57.444 30.769 0.00 0.00 0.00 2.17
77 78 8.038944 TCTTATAAAGCAACCGACTTAGTGATT 58.961 33.333 0.00 0.00 0.00 2.57
78 79 7.553334 TCTTATAAAGCAACCGACTTAGTGAT 58.447 34.615 0.00 0.00 0.00 3.06
79 80 6.927416 TCTTATAAAGCAACCGACTTAGTGA 58.073 36.000 0.00 0.00 0.00 3.41
80 81 7.591006 TTCTTATAAAGCAACCGACTTAGTG 57.409 36.000 0.00 0.00 0.00 2.74
81 82 8.611654 TTTTCTTATAAAGCAACCGACTTAGT 57.388 30.769 0.00 0.00 0.00 2.24
82 83 9.326339 GTTTTTCTTATAAAGCAACCGACTTAG 57.674 33.333 0.00 0.00 0.00 2.18
83 84 9.059260 AGTTTTTCTTATAAAGCAACCGACTTA 57.941 29.630 0.00 0.00 0.00 2.24
84 85 7.937649 AGTTTTTCTTATAAAGCAACCGACTT 58.062 30.769 0.00 0.00 0.00 3.01
85 86 7.506328 AGTTTTTCTTATAAAGCAACCGACT 57.494 32.000 0.00 0.00 0.00 4.18
86 87 7.961283 CCTAGTTTTTCTTATAAAGCAACCGAC 59.039 37.037 0.00 0.00 0.00 4.79
87 88 7.361457 GCCTAGTTTTTCTTATAAAGCAACCGA 60.361 37.037 0.00 0.00 0.00 4.69
88 89 6.745907 GCCTAGTTTTTCTTATAAAGCAACCG 59.254 38.462 0.00 0.00 0.00 4.44
89 90 7.033791 GGCCTAGTTTTTCTTATAAAGCAACC 58.966 38.462 0.00 0.00 0.00 3.77
90 91 6.745907 CGGCCTAGTTTTTCTTATAAAGCAAC 59.254 38.462 0.00 0.00 0.00 4.17
91 92 6.655848 TCGGCCTAGTTTTTCTTATAAAGCAA 59.344 34.615 0.00 0.00 0.00 3.91
92 93 6.174760 TCGGCCTAGTTTTTCTTATAAAGCA 58.825 36.000 0.00 0.00 0.00 3.91
93 94 6.673154 TCGGCCTAGTTTTTCTTATAAAGC 57.327 37.500 0.00 0.00 0.00 3.51
94 95 9.338291 GTTTTCGGCCTAGTTTTTCTTATAAAG 57.662 33.333 0.00 0.00 0.00 1.85
95 96 8.298854 GGTTTTCGGCCTAGTTTTTCTTATAAA 58.701 33.333 0.00 0.00 0.00 1.40
96 97 7.094248 GGGTTTTCGGCCTAGTTTTTCTTATAA 60.094 37.037 0.00 0.00 0.00 0.98
97 98 6.375174 GGGTTTTCGGCCTAGTTTTTCTTATA 59.625 38.462 0.00 0.00 0.00 0.98
98 99 5.184479 GGGTTTTCGGCCTAGTTTTTCTTAT 59.816 40.000 0.00 0.00 0.00 1.73
99 100 4.520111 GGGTTTTCGGCCTAGTTTTTCTTA 59.480 41.667 0.00 0.00 0.00 2.10
100 101 3.319972 GGGTTTTCGGCCTAGTTTTTCTT 59.680 43.478 0.00 0.00 0.00 2.52
101 102 2.889045 GGGTTTTCGGCCTAGTTTTTCT 59.111 45.455 0.00 0.00 0.00 2.52
102 103 2.889045 AGGGTTTTCGGCCTAGTTTTTC 59.111 45.455 0.00 0.00 0.00 2.29
103 104 2.953453 AGGGTTTTCGGCCTAGTTTTT 58.047 42.857 0.00 0.00 0.00 1.94
104 105 2.670019 AGGGTTTTCGGCCTAGTTTT 57.330 45.000 0.00 0.00 0.00 2.43
105 106 2.670019 AAGGGTTTTCGGCCTAGTTT 57.330 45.000 0.00 0.00 0.00 2.66
106 107 5.440207 TTATAAGGGTTTTCGGCCTAGTT 57.560 39.130 0.00 0.00 0.00 2.24
107 108 5.188434 GTTTATAAGGGTTTTCGGCCTAGT 58.812 41.667 0.00 0.00 0.00 2.57
108 109 5.187687 TGTTTATAAGGGTTTTCGGCCTAG 58.812 41.667 0.00 0.00 0.00 3.02
109 110 5.176741 TGTTTATAAGGGTTTTCGGCCTA 57.823 39.130 0.00 0.00 0.00 3.93
110 111 4.036941 TGTTTATAAGGGTTTTCGGCCT 57.963 40.909 0.00 0.00 0.00 5.19
111 112 4.219070 ACTTGTTTATAAGGGTTTTCGGCC 59.781 41.667 0.00 0.00 31.94 6.13
112 113 5.048573 TCACTTGTTTATAAGGGTTTTCGGC 60.049 40.000 0.00 0.00 32.86 5.54
113 114 6.563222 TCACTTGTTTATAAGGGTTTTCGG 57.437 37.500 0.00 0.00 32.86 4.30
114 115 8.859517 TTTTCACTTGTTTATAAGGGTTTTCG 57.140 30.769 0.00 0.00 32.86 3.46
119 120 9.416284 TCTTCTTTTTCACTTGTTTATAAGGGT 57.584 29.630 0.00 0.00 32.86 4.34
125 126 9.573133 CACAGTTCTTCTTTTTCACTTGTTTAT 57.427 29.630 0.00 0.00 0.00 1.40
126 127 8.026607 CCACAGTTCTTCTTTTTCACTTGTTTA 58.973 33.333 0.00 0.00 0.00 2.01
127 128 6.868339 CCACAGTTCTTCTTTTTCACTTGTTT 59.132 34.615 0.00 0.00 0.00 2.83
128 129 6.208599 TCCACAGTTCTTCTTTTTCACTTGTT 59.791 34.615 0.00 0.00 0.00 2.83
129 130 5.710099 TCCACAGTTCTTCTTTTTCACTTGT 59.290 36.000 0.00 0.00 0.00 3.16
130 131 6.194796 TCCACAGTTCTTCTTTTTCACTTG 57.805 37.500 0.00 0.00 0.00 3.16
131 132 6.625960 GCTTCCACAGTTCTTCTTTTTCACTT 60.626 38.462 0.00 0.00 0.00 3.16
132 133 5.163612 GCTTCCACAGTTCTTCTTTTTCACT 60.164 40.000 0.00 0.00 0.00 3.41
133 134 5.037385 GCTTCCACAGTTCTTCTTTTTCAC 58.963 41.667 0.00 0.00 0.00 3.18
134 135 4.097892 GGCTTCCACAGTTCTTCTTTTTCA 59.902 41.667 0.00 0.00 0.00 2.69
135 136 4.097892 TGGCTTCCACAGTTCTTCTTTTTC 59.902 41.667 0.00 0.00 0.00 2.29
136 137 4.023291 TGGCTTCCACAGTTCTTCTTTTT 58.977 39.130 0.00 0.00 0.00 1.94
137 138 3.631250 TGGCTTCCACAGTTCTTCTTTT 58.369 40.909 0.00 0.00 0.00 2.27
138 139 3.297134 TGGCTTCCACAGTTCTTCTTT 57.703 42.857 0.00 0.00 0.00 2.52
150 151 0.780637 TATGTTTGGGGTGGCTTCCA 59.219 50.000 2.26 0.00 0.00 3.53
151 152 1.182667 GTATGTTTGGGGTGGCTTCC 58.817 55.000 0.00 0.00 0.00 3.46
152 153 1.917872 TGTATGTTTGGGGTGGCTTC 58.082 50.000 0.00 0.00 0.00 3.86
153 154 2.225242 TGATGTATGTTTGGGGTGGCTT 60.225 45.455 0.00 0.00 0.00 4.35
154 155 1.357420 TGATGTATGTTTGGGGTGGCT 59.643 47.619 0.00 0.00 0.00 4.75
155 156 1.846007 TGATGTATGTTTGGGGTGGC 58.154 50.000 0.00 0.00 0.00 5.01
156 157 2.495669 GGTTGATGTATGTTTGGGGTGG 59.504 50.000 0.00 0.00 0.00 4.61
157 158 3.430453 AGGTTGATGTATGTTTGGGGTG 58.570 45.455 0.00 0.00 0.00 4.61
158 159 3.563479 GGAGGTTGATGTATGTTTGGGGT 60.563 47.826 0.00 0.00 0.00 4.95
159 160 3.023832 GGAGGTTGATGTATGTTTGGGG 58.976 50.000 0.00 0.00 0.00 4.96
160 161 3.696045 TGGAGGTTGATGTATGTTTGGG 58.304 45.455 0.00 0.00 0.00 4.12
161 162 5.469479 GTTTGGAGGTTGATGTATGTTTGG 58.531 41.667 0.00 0.00 0.00 3.28
162 163 5.153513 CGTTTGGAGGTTGATGTATGTTTG 58.846 41.667 0.00 0.00 0.00 2.93
163 164 4.320935 GCGTTTGGAGGTTGATGTATGTTT 60.321 41.667 0.00 0.00 0.00 2.83
164 165 3.190535 GCGTTTGGAGGTTGATGTATGTT 59.809 43.478 0.00 0.00 0.00 2.71
165 166 2.747446 GCGTTTGGAGGTTGATGTATGT 59.253 45.455 0.00 0.00 0.00 2.29
166 167 2.097466 GGCGTTTGGAGGTTGATGTATG 59.903 50.000 0.00 0.00 0.00 2.39
167 168 2.290641 TGGCGTTTGGAGGTTGATGTAT 60.291 45.455 0.00 0.00 0.00 2.29
168 169 1.072489 TGGCGTTTGGAGGTTGATGTA 59.928 47.619 0.00 0.00 0.00 2.29
169 170 0.179004 TGGCGTTTGGAGGTTGATGT 60.179 50.000 0.00 0.00 0.00 3.06
170 171 0.240945 GTGGCGTTTGGAGGTTGATG 59.759 55.000 0.00 0.00 0.00 3.07
171 172 0.110486 AGTGGCGTTTGGAGGTTGAT 59.890 50.000 0.00 0.00 0.00 2.57
172 173 0.106918 AAGTGGCGTTTGGAGGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
173 174 0.310854 GAAGTGGCGTTTGGAGGTTG 59.689 55.000 0.00 0.00 0.00 3.77
174 175 0.822121 GGAAGTGGCGTTTGGAGGTT 60.822 55.000 0.00 0.00 0.00 3.50
175 176 1.228154 GGAAGTGGCGTTTGGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
176 177 1.971695 GGGAAGTGGCGTTTGGAGG 60.972 63.158 0.00 0.00 0.00 4.30
177 178 0.537371 AAGGGAAGTGGCGTTTGGAG 60.537 55.000 0.00 0.00 0.00 3.86
178 179 0.536460 GAAGGGAAGTGGCGTTTGGA 60.536 55.000 0.00 0.00 0.00 3.53
179 180 1.524008 GGAAGGGAAGTGGCGTTTGG 61.524 60.000 0.00 0.00 0.00 3.28
180 181 1.852067 CGGAAGGGAAGTGGCGTTTG 61.852 60.000 0.00 0.00 0.00 2.93
181 182 1.599797 CGGAAGGGAAGTGGCGTTT 60.600 57.895 0.00 0.00 0.00 3.60
182 183 2.032071 CGGAAGGGAAGTGGCGTT 59.968 61.111 0.00 0.00 0.00 4.84
183 184 2.920912 TCGGAAGGGAAGTGGCGT 60.921 61.111 0.00 0.00 0.00 5.68
184 185 2.434359 GTCGGAAGGGAAGTGGCG 60.434 66.667 0.00 0.00 0.00 5.69
185 186 2.046217 GGTCGGAAGGGAAGTGGC 60.046 66.667 0.00 0.00 0.00 5.01
186 187 2.264794 CGGTCGGAAGGGAAGTGG 59.735 66.667 0.00 0.00 0.00 4.00
187 188 1.080025 GTCGGTCGGAAGGGAAGTG 60.080 63.158 0.00 0.00 0.00 3.16
188 189 2.281295 GGTCGGTCGGAAGGGAAGT 61.281 63.158 0.00 0.00 0.00 3.01
189 190 1.614241 ATGGTCGGTCGGAAGGGAAG 61.614 60.000 0.00 0.00 0.00 3.46
190 191 0.324552 TATGGTCGGTCGGAAGGGAA 60.325 55.000 0.00 0.00 0.00 3.97
191 192 0.324552 TTATGGTCGGTCGGAAGGGA 60.325 55.000 0.00 0.00 0.00 4.20
192 193 0.756903 ATTATGGTCGGTCGGAAGGG 59.243 55.000 0.00 0.00 0.00 3.95
193 194 2.159014 TGAATTATGGTCGGTCGGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
194 195 3.123804 CTGAATTATGGTCGGTCGGAAG 58.876 50.000 0.00 0.00 0.00 3.46
195 196 2.498481 ACTGAATTATGGTCGGTCGGAA 59.502 45.455 0.00 0.00 27.95 4.30
196 197 2.104967 ACTGAATTATGGTCGGTCGGA 58.895 47.619 0.00 0.00 27.95 4.55
197 198 2.201732 CACTGAATTATGGTCGGTCGG 58.798 52.381 0.00 0.00 32.10 4.79
198 199 2.201732 CCACTGAATTATGGTCGGTCG 58.798 52.381 0.00 0.00 32.10 4.79
199 200 2.169769 TCCCACTGAATTATGGTCGGTC 59.830 50.000 3.00 0.00 32.10 4.79
200 201 2.170607 CTCCCACTGAATTATGGTCGGT 59.829 50.000 3.00 0.00 34.87 4.69
201 202 2.485479 CCTCCCACTGAATTATGGTCGG 60.485 54.545 3.00 0.02 33.80 4.79
202 203 2.434336 TCCTCCCACTGAATTATGGTCG 59.566 50.000 3.00 0.00 33.80 4.79
203 204 4.503714 TTCCTCCCACTGAATTATGGTC 57.496 45.455 3.00 0.00 33.80 4.02
204 205 4.946160 TTTCCTCCCACTGAATTATGGT 57.054 40.909 3.00 0.00 33.80 3.55
205 206 6.605119 AGTATTTCCTCCCACTGAATTATGG 58.395 40.000 0.00 0.00 35.59 2.74
206 207 7.512992 AGAGTATTTCCTCCCACTGAATTATG 58.487 38.462 0.00 0.00 31.53 1.90
207 208 7.698163 AGAGTATTTCCTCCCACTGAATTAT 57.302 36.000 0.00 0.00 31.53 1.28
208 209 7.510675 AAGAGTATTTCCTCCCACTGAATTA 57.489 36.000 0.00 0.00 31.53 1.40
209 210 6.394345 AAGAGTATTTCCTCCCACTGAATT 57.606 37.500 0.00 0.00 31.53 2.17
210 211 5.395768 CGAAGAGTATTTCCTCCCACTGAAT 60.396 44.000 0.00 0.00 31.53 2.57
211 212 4.081642 CGAAGAGTATTTCCTCCCACTGAA 60.082 45.833 0.00 0.00 31.53 3.02
212 213 3.447586 CGAAGAGTATTTCCTCCCACTGA 59.552 47.826 0.00 0.00 31.53 3.41
213 214 3.447586 TCGAAGAGTATTTCCTCCCACTG 59.552 47.826 0.00 0.00 31.53 3.66
214 215 3.447944 GTCGAAGAGTATTTCCTCCCACT 59.552 47.826 0.00 0.00 36.95 4.00
215 216 3.194968 TGTCGAAGAGTATTTCCTCCCAC 59.805 47.826 0.00 0.00 36.95 4.61
216 217 3.437213 TGTCGAAGAGTATTTCCTCCCA 58.563 45.455 0.00 0.00 36.95 4.37
217 218 4.467198 TTGTCGAAGAGTATTTCCTCCC 57.533 45.455 0.00 0.00 36.95 4.30
218 219 4.271291 GCATTGTCGAAGAGTATTTCCTCC 59.729 45.833 0.00 0.00 36.95 4.30
219 220 4.271291 GGCATTGTCGAAGAGTATTTCCTC 59.729 45.833 0.00 0.00 36.95 3.71
220 221 4.192317 GGCATTGTCGAAGAGTATTTCCT 58.808 43.478 0.00 0.00 36.95 3.36
221 222 3.312697 GGGCATTGTCGAAGAGTATTTCC 59.687 47.826 0.00 0.00 36.95 3.13
222 223 4.192317 AGGGCATTGTCGAAGAGTATTTC 58.808 43.478 0.00 0.00 36.95 2.17
223 224 4.192317 GAGGGCATTGTCGAAGAGTATTT 58.808 43.478 0.00 0.00 36.95 1.40
224 225 3.432326 GGAGGGCATTGTCGAAGAGTATT 60.432 47.826 0.00 0.00 36.95 1.89
225 226 2.103263 GGAGGGCATTGTCGAAGAGTAT 59.897 50.000 0.00 0.00 36.95 2.12
226 227 1.480954 GGAGGGCATTGTCGAAGAGTA 59.519 52.381 0.00 0.00 36.95 2.59
227 228 0.250513 GGAGGGCATTGTCGAAGAGT 59.749 55.000 0.00 0.00 36.95 3.24
228 229 0.250234 TGGAGGGCATTGTCGAAGAG 59.750 55.000 0.00 0.00 36.95 2.85
229 230 0.690192 TTGGAGGGCATTGTCGAAGA 59.310 50.000 0.00 0.00 0.00 2.87
230 231 1.089920 CTTGGAGGGCATTGTCGAAG 58.910 55.000 0.00 0.00 0.00 3.79
231 232 0.322456 CCTTGGAGGGCATTGTCGAA 60.322 55.000 0.00 0.00 0.00 3.71
232 233 1.198094 TCCTTGGAGGGCATTGTCGA 61.198 55.000 0.00 0.00 35.59 4.20
233 234 0.322456 TTCCTTGGAGGGCATTGTCG 60.322 55.000 0.00 0.00 35.59 4.35
234 235 1.177401 GTTCCTTGGAGGGCATTGTC 58.823 55.000 0.00 0.00 35.59 3.18
235 236 0.482446 TGTTCCTTGGAGGGCATTGT 59.518 50.000 0.00 0.00 35.59 2.71
236 237 1.753073 GATGTTCCTTGGAGGGCATTG 59.247 52.381 0.00 0.00 35.59 2.82
237 238 1.358787 TGATGTTCCTTGGAGGGCATT 59.641 47.619 0.00 0.00 35.59 3.56
238 239 1.002069 TGATGTTCCTTGGAGGGCAT 58.998 50.000 5.21 5.21 35.59 4.40
239 240 0.038166 GTGATGTTCCTTGGAGGGCA 59.962 55.000 0.00 0.00 35.59 5.36
240 241 0.681243 GGTGATGTTCCTTGGAGGGC 60.681 60.000 0.00 0.00 35.59 5.19
241 242 0.392998 CGGTGATGTTCCTTGGAGGG 60.393 60.000 0.00 0.00 35.59 4.30
242 243 0.392998 CCGGTGATGTTCCTTGGAGG 60.393 60.000 0.00 0.00 36.46 4.30
243 244 1.026718 GCCGGTGATGTTCCTTGGAG 61.027 60.000 1.90 0.00 0.00 3.86
244 245 1.002624 GCCGGTGATGTTCCTTGGA 60.003 57.895 1.90 0.00 0.00 3.53
245 246 0.893270 TTGCCGGTGATGTTCCTTGG 60.893 55.000 1.90 0.00 0.00 3.61
246 247 0.240945 GTTGCCGGTGATGTTCCTTG 59.759 55.000 1.90 0.00 0.00 3.61
247 248 1.234615 CGTTGCCGGTGATGTTCCTT 61.235 55.000 1.90 0.00 0.00 3.36
248 249 1.671054 CGTTGCCGGTGATGTTCCT 60.671 57.895 1.90 0.00 0.00 3.36
249 250 1.669760 TCGTTGCCGGTGATGTTCC 60.670 57.895 1.90 0.00 33.95 3.62
250 251 1.495951 GTCGTTGCCGGTGATGTTC 59.504 57.895 1.90 0.00 33.95 3.18
251 252 1.964373 GGTCGTTGCCGGTGATGTT 60.964 57.895 1.90 0.00 33.95 2.71
252 253 2.358247 GGTCGTTGCCGGTGATGT 60.358 61.111 1.90 0.00 33.95 3.06
253 254 3.124921 GGGTCGTTGCCGGTGATG 61.125 66.667 1.90 0.00 33.95 3.07
254 255 4.404098 GGGGTCGTTGCCGGTGAT 62.404 66.667 1.90 0.00 33.95 3.06
265 266 0.949105 CTTGTTCTTCACGGGGGTCG 60.949 60.000 0.00 0.00 45.88 4.79
266 267 0.605589 CCTTGTTCTTCACGGGGGTC 60.606 60.000 0.00 0.00 32.61 4.46
267 268 1.454539 CCTTGTTCTTCACGGGGGT 59.545 57.895 0.00 0.00 32.61 4.95
268 269 1.971695 GCCTTGTTCTTCACGGGGG 60.972 63.158 0.00 0.00 36.18 5.40
269 270 0.537371 AAGCCTTGTTCTTCACGGGG 60.537 55.000 0.00 0.00 36.18 5.73
270 271 1.266989 GAAAGCCTTGTTCTTCACGGG 59.733 52.381 0.00 0.00 36.18 5.28
271 272 1.069906 CGAAAGCCTTGTTCTTCACGG 60.070 52.381 0.00 0.00 38.33 4.94
272 273 2.300623 CGAAAGCCTTGTTCTTCACG 57.699 50.000 0.00 0.00 0.00 4.35
286 287 0.375106 GAGGCGGAAATGAGCGAAAG 59.625 55.000 0.00 0.00 0.00 2.62
287 288 1.358725 CGAGGCGGAAATGAGCGAAA 61.359 55.000 0.00 0.00 0.00 3.46
288 289 1.809619 CGAGGCGGAAATGAGCGAA 60.810 57.895 0.00 0.00 0.00 4.70
289 290 2.202743 CGAGGCGGAAATGAGCGA 60.203 61.111 0.00 0.00 0.00 4.93
290 291 3.929948 GCGAGGCGGAAATGAGCG 61.930 66.667 0.00 0.00 0.00 5.03
291 292 3.577313 GGCGAGGCGGAAATGAGC 61.577 66.667 0.00 0.00 0.00 4.26
292 293 2.125147 TGGCGAGGCGGAAATGAG 60.125 61.111 0.00 0.00 0.00 2.90
293 294 2.435938 GTGGCGAGGCGGAAATGA 60.436 61.111 0.00 0.00 0.00 2.57
294 295 3.508840 GGTGGCGAGGCGGAAATG 61.509 66.667 0.00 0.00 0.00 2.32
295 296 3.682292 GAGGTGGCGAGGCGGAAAT 62.682 63.158 0.00 0.00 0.00 2.17
296 297 4.388499 GAGGTGGCGAGGCGGAAA 62.388 66.667 0.00 0.00 0.00 3.13
300 301 4.803426 GTCAGAGGTGGCGAGGCG 62.803 72.222 0.00 0.00 0.00 5.52
301 302 3.363844 GAGTCAGAGGTGGCGAGGC 62.364 68.421 0.00 0.00 31.53 4.70
302 303 1.943116 CTGAGTCAGAGGTGGCGAGG 61.943 65.000 15.46 0.00 32.44 4.63
303 304 1.510383 CTGAGTCAGAGGTGGCGAG 59.490 63.158 15.46 0.00 32.44 5.03
304 305 1.979155 CCTGAGTCAGAGGTGGCGA 60.979 63.158 22.09 0.00 32.44 5.54
305 306 2.575993 CCTGAGTCAGAGGTGGCG 59.424 66.667 22.09 0.00 32.44 5.69
306 307 0.614979 TACCCTGAGTCAGAGGTGGC 60.615 60.000 29.27 0.00 36.34 5.01
307 308 1.479709 CTACCCTGAGTCAGAGGTGG 58.520 60.000 29.27 25.35 36.34 4.61
308 309 1.006043 TCCTACCCTGAGTCAGAGGTG 59.994 57.143 29.27 21.78 36.34 4.00
309 310 1.286553 CTCCTACCCTGAGTCAGAGGT 59.713 57.143 26.56 26.56 38.17 3.85
310 311 2.026905 GCTCCTACCCTGAGTCAGAGG 61.027 61.905 22.09 20.94 32.44 3.69
311 312 1.398692 GCTCCTACCCTGAGTCAGAG 58.601 60.000 22.09 11.27 32.44 3.35
312 313 0.033011 GGCTCCTACCCTGAGTCAGA 60.033 60.000 22.09 0.46 34.59 3.27
313 314 2.510664 GGCTCCTACCCTGAGTCAG 58.489 63.158 13.56 13.56 34.59 3.51
314 315 4.787735 GGCTCCTACCCTGAGTCA 57.212 61.111 0.00 0.00 34.59 3.41
328 329 1.952102 TACGAAATTCGAGCGGGGCT 61.952 55.000 22.92 0.00 43.74 5.19
329 330 1.488261 CTACGAAATTCGAGCGGGGC 61.488 60.000 22.92 0.00 43.74 5.80
330 331 1.488261 GCTACGAAATTCGAGCGGGG 61.488 60.000 22.92 6.12 43.74 5.73
331 332 1.925052 GCTACGAAATTCGAGCGGG 59.075 57.895 22.92 7.71 43.74 6.13
345 346 2.879462 CAGTCCGGTTCGCGCTAC 60.879 66.667 5.56 3.05 0.00 3.58
349 350 4.796231 CCTCCAGTCCGGTTCGCG 62.796 72.222 0.00 0.00 35.57 5.87
357 358 0.328592 GGGTCCTTTTCCTCCAGTCC 59.671 60.000 0.00 0.00 0.00 3.85
358 359 0.328592 GGGGTCCTTTTCCTCCAGTC 59.671 60.000 0.00 0.00 0.00 3.51
359 360 0.402861 TGGGGTCCTTTTCCTCCAGT 60.403 55.000 0.00 0.00 0.00 4.00
360 361 0.038310 GTGGGGTCCTTTTCCTCCAG 59.962 60.000 0.00 0.00 0.00 3.86
361 362 1.774894 CGTGGGGTCCTTTTCCTCCA 61.775 60.000 0.00 0.00 0.00 3.86
374 375 0.744414 GTGATGATGTGACCGTGGGG 60.744 60.000 0.00 0.00 40.11 4.96
375 376 0.744414 GGTGATGATGTGACCGTGGG 60.744 60.000 0.00 0.00 0.00 4.61
376 377 0.036483 TGGTGATGATGTGACCGTGG 60.036 55.000 0.00 0.00 36.81 4.94
377 378 1.667212 CATGGTGATGATGTGACCGTG 59.333 52.381 0.00 0.00 43.26 4.94
378 379 1.407299 CCATGGTGATGATGTGACCGT 60.407 52.381 2.57 0.00 36.81 4.83
379 380 1.302366 CCATGGTGATGATGTGACCG 58.698 55.000 2.57 0.00 36.81 4.79
380 381 2.425143 ACCATGGTGATGATGTGACC 57.575 50.000 18.99 0.00 34.23 4.02
419 426 3.215568 TGGTTTGTGCTGGTGCCG 61.216 61.111 0.00 0.00 38.71 5.69
427 434 0.528249 CCTGTTGCAGTGGTTTGTGC 60.528 55.000 0.00 0.00 40.29 4.57
431 438 1.076044 AGCCCTGTTGCAGTGGTTT 60.076 52.632 0.00 0.00 0.00 3.27
438 445 3.551496 CTTCCGGAGCCCTGTTGCA 62.551 63.158 3.34 0.00 0.00 4.08
460 467 2.594962 GGTGAGTGGTGCGACGTTG 61.595 63.158 0.00 0.00 0.00 4.10
468 475 2.981560 GCAATGGCGGTGAGTGGTG 61.982 63.158 0.00 0.00 0.00 4.17
469 476 2.672996 GCAATGGCGGTGAGTGGT 60.673 61.111 0.00 0.00 0.00 4.16
514 522 1.002366 GTGCGATTGTCTAGCAGTGG 58.998 55.000 0.00 0.00 41.93 4.00
517 525 1.596260 CATGGTGCGATTGTCTAGCAG 59.404 52.381 0.00 0.00 41.93 4.24
521 529 0.251634 TGGCATGGTGCGATTGTCTA 59.748 50.000 0.00 0.00 46.21 2.59
528 536 4.634703 ACCGTTGGCATGGTGCGA 62.635 61.111 10.77 0.00 46.21 5.10
531 539 2.981560 GCAGACCGTTGGCATGGTG 61.982 63.158 15.75 4.90 43.04 4.17
532 540 2.672996 GCAGACCGTTGGCATGGT 60.673 61.111 11.31 11.31 46.01 3.55
536 544 1.315981 TTTTGTGCAGACCGTTGGCA 61.316 50.000 0.00 0.00 34.70 4.92
539 547 0.591236 CCGTTTTGTGCAGACCGTTG 60.591 55.000 0.00 0.00 0.00 4.10
541 549 0.534203 ATCCGTTTTGTGCAGACCGT 60.534 50.000 0.00 0.00 0.00 4.83
543 551 0.521735 GGATCCGTTTTGTGCAGACC 59.478 55.000 0.00 0.00 0.00 3.85
544 552 0.165944 CGGATCCGTTTTGTGCAGAC 59.834 55.000 26.35 0.00 34.35 3.51
545 553 0.953471 CCGGATCCGTTTTGTGCAGA 60.953 55.000 31.22 0.00 37.81 4.26
546 554 1.501741 CCGGATCCGTTTTGTGCAG 59.498 57.895 31.22 10.00 37.81 4.41
547 555 1.969064 CCCGGATCCGTTTTGTGCA 60.969 57.895 31.22 0.00 37.81 4.57
548 556 2.874751 CCCGGATCCGTTTTGTGC 59.125 61.111 31.22 0.00 37.81 4.57
549 557 2.874751 GCCCGGATCCGTTTTGTG 59.125 61.111 31.22 15.39 37.81 3.33
550 558 2.530958 ATCGCCCGGATCCGTTTTGT 62.531 55.000 31.22 12.53 37.81 2.83
551 559 0.531090 TATCGCCCGGATCCGTTTTG 60.531 55.000 31.22 18.08 36.55 2.44
552 560 0.249741 CTATCGCCCGGATCCGTTTT 60.250 55.000 31.22 14.17 36.55 2.43
553 561 1.366366 CTATCGCCCGGATCCGTTT 59.634 57.895 31.22 13.83 36.55 3.60
554 562 3.048602 CTATCGCCCGGATCCGTT 58.951 61.111 31.22 13.51 36.55 4.44
555 563 3.681835 GCTATCGCCCGGATCCGT 61.682 66.667 31.22 15.92 36.55 4.69
556 564 3.680786 TGCTATCGCCCGGATCCG 61.681 66.667 27.65 27.65 36.55 4.18
558 566 2.048127 GGTGCTATCGCCCGGATC 60.048 66.667 0.73 0.00 36.88 3.36
564 572 1.815421 CACAGTGGGTGCTATCGCC 60.815 63.158 0.00 0.00 41.36 5.54
565 573 3.799753 CACAGTGGGTGCTATCGC 58.200 61.111 0.00 0.00 41.36 4.58
573 581 3.650942 TCCAATAGAGAAACACAGTGGGT 59.349 43.478 5.31 0.00 0.00 4.51
574 582 4.286297 TCCAATAGAGAAACACAGTGGG 57.714 45.455 5.31 0.00 0.00 4.61
576 584 4.756642 TGCTTCCAATAGAGAAACACAGTG 59.243 41.667 0.00 0.00 0.00 3.66
577 585 4.973168 TGCTTCCAATAGAGAAACACAGT 58.027 39.130 0.00 0.00 0.00 3.55
578 586 6.072286 ACAATGCTTCCAATAGAGAAACACAG 60.072 38.462 0.00 0.00 0.00 3.66
580 588 6.259550 ACAATGCTTCCAATAGAGAAACAC 57.740 37.500 0.00 0.00 0.00 3.32
581 589 6.899393 AACAATGCTTCCAATAGAGAAACA 57.101 33.333 0.00 0.00 0.00 2.83
582 590 8.593492 AAAAACAATGCTTCCAATAGAGAAAC 57.407 30.769 0.00 0.00 0.00 2.78
608 616 6.183361 ACAATGCTTCCAATACCCTTCAAAAA 60.183 34.615 0.00 0.00 0.00 1.94
609 617 5.306678 ACAATGCTTCCAATACCCTTCAAAA 59.693 36.000 0.00 0.00 0.00 2.44
610 618 4.837860 ACAATGCTTCCAATACCCTTCAAA 59.162 37.500 0.00 0.00 0.00 2.69
611 619 4.415596 ACAATGCTTCCAATACCCTTCAA 58.584 39.130 0.00 0.00 0.00 2.69
613 621 5.405935 AAACAATGCTTCCAATACCCTTC 57.594 39.130 0.00 0.00 0.00 3.46
614 622 5.512921 CCAAAACAATGCTTCCAATACCCTT 60.513 40.000 0.00 0.00 0.00 3.95
615 623 4.020307 CCAAAACAATGCTTCCAATACCCT 60.020 41.667 0.00 0.00 0.00 4.34
616 624 4.020662 TCCAAAACAATGCTTCCAATACCC 60.021 41.667 0.00 0.00 0.00 3.69
620 628 4.344679 TGTCTCCAAAACAATGCTTCCAAT 59.655 37.500 0.00 0.00 0.00 3.16
621 629 3.703556 TGTCTCCAAAACAATGCTTCCAA 59.296 39.130 0.00 0.00 0.00 3.53
622 630 3.295093 TGTCTCCAAAACAATGCTTCCA 58.705 40.909 0.00 0.00 0.00 3.53
624 632 4.240096 CCATGTCTCCAAAACAATGCTTC 58.760 43.478 0.00 0.00 0.00 3.86
625 633 3.555586 GCCATGTCTCCAAAACAATGCTT 60.556 43.478 0.00 0.00 0.00 3.91
626 634 2.028748 GCCATGTCTCCAAAACAATGCT 60.029 45.455 0.00 0.00 0.00 3.79
627 635 2.028748 AGCCATGTCTCCAAAACAATGC 60.029 45.455 0.00 0.00 0.00 3.56
628 636 3.947910 AGCCATGTCTCCAAAACAATG 57.052 42.857 0.00 0.00 0.00 2.82
632 640 2.229784 CTCCAAGCCATGTCTCCAAAAC 59.770 50.000 0.00 0.00 0.00 2.43
634 642 1.272092 CCTCCAAGCCATGTCTCCAAA 60.272 52.381 0.00 0.00 0.00 3.28
639 647 2.683211 AAAACCTCCAAGCCATGTCT 57.317 45.000 0.00 0.00 0.00 3.41
660 668 0.383949 GAGCACCAAAGGAACGCAAA 59.616 50.000 0.00 0.00 0.00 3.68
661 669 1.781025 CGAGCACCAAAGGAACGCAA 61.781 55.000 0.00 0.00 0.00 4.85
662 670 2.250939 CGAGCACCAAAGGAACGCA 61.251 57.895 0.00 0.00 0.00 5.24
664 672 2.556287 GCGAGCACCAAAGGAACG 59.444 61.111 0.00 0.00 0.00 3.95
679 734 1.024579 AACAACCCAGAATAGCGGCG 61.025 55.000 0.51 0.51 0.00 6.46
682 737 3.270027 TGATGAACAACCCAGAATAGCG 58.730 45.455 0.00 0.00 0.00 4.26
684 739 4.641989 CCCTTGATGAACAACCCAGAATAG 59.358 45.833 0.00 0.00 34.56 1.73
685 740 4.044065 ACCCTTGATGAACAACCCAGAATA 59.956 41.667 0.00 0.00 34.56 1.75
691 746 0.603065 GCACCCTTGATGAACAACCC 59.397 55.000 0.00 0.00 34.56 4.11
694 749 3.758023 CACATAGCACCCTTGATGAACAA 59.242 43.478 0.00 0.00 36.97 2.83
696 751 2.684881 CCACATAGCACCCTTGATGAAC 59.315 50.000 0.00 0.00 0.00 3.18
699 754 2.292267 GACCACATAGCACCCTTGATG 58.708 52.381 0.00 0.00 0.00 3.07
700 755 1.212935 GGACCACATAGCACCCTTGAT 59.787 52.381 0.00 0.00 0.00 2.57
701 756 0.618458 GGACCACATAGCACCCTTGA 59.382 55.000 0.00 0.00 0.00 3.02
703 758 1.999346 GGGACCACATAGCACCCTT 59.001 57.895 0.00 0.00 37.75 3.95
704 759 1.082954 AGGGACCACATAGCACCCT 59.917 57.895 0.00 0.00 45.06 4.34
705 760 1.224592 CAGGGACCACATAGCACCC 59.775 63.158 0.00 0.00 40.71 4.61
706 761 0.107654 GACAGGGACCACATAGCACC 60.108 60.000 0.00 0.00 0.00 5.01
707 762 0.613260 TGACAGGGACCACATAGCAC 59.387 55.000 0.00 0.00 0.00 4.40
708 763 0.904649 CTGACAGGGACCACATAGCA 59.095 55.000 0.00 0.00 0.00 3.49
709 764 0.905357 ACTGACAGGGACCACATAGC 59.095 55.000 7.51 0.00 0.00 2.97
710 765 1.482593 GGACTGACAGGGACCACATAG 59.517 57.143 7.51 0.00 0.00 2.23
711 766 1.078823 AGGACTGACAGGGACCACATA 59.921 52.381 7.51 0.00 0.00 2.29
713 768 0.485543 TAGGACTGACAGGGACCACA 59.514 55.000 7.51 0.00 0.00 4.17
714 769 1.187087 CTAGGACTGACAGGGACCAC 58.813 60.000 7.51 0.00 0.00 4.16
716 771 0.324830 AGCTAGGACTGACAGGGACC 60.325 60.000 7.51 7.38 0.00 4.46
722 836 4.081642 GGAATACACAAGCTAGGACTGACA 60.082 45.833 0.00 0.00 0.00 3.58
735 849 7.464844 CGTTGCTGATAATAACGGAATACACAA 60.465 37.037 0.00 0.00 42.31 3.33
756 870 4.992688 TCCAAATAATTCCATCACGTTGC 58.007 39.130 0.00 0.00 0.00 4.17
779 893 1.202806 CCTGTGCCTCTTTCTTCACCA 60.203 52.381 0.00 0.00 0.00 4.17
797 911 1.815003 CGCTTCAAAATCTGCTTCCCT 59.185 47.619 0.00 0.00 0.00 4.20
854 968 1.135315 CCATGGGCGTCAAGTCATTTG 60.135 52.381 2.85 0.00 38.17 2.32
868 982 1.758440 TAGCTTCCGCTAGCCATGGG 61.758 60.000 15.13 4.44 46.79 4.00
1014 1146 1.655885 CACGTCGTAGTGGTGGTGA 59.344 57.895 0.00 0.00 38.40 4.02
1024 1156 4.409218 GCACGCCTCCACGTCGTA 62.409 66.667 0.00 0.00 46.34 3.43
1095 1233 1.066430 ACGTACACCTTGCGGATGAAT 60.066 47.619 0.00 0.00 37.69 2.57
1116 1254 1.617850 AGCATCTGGATGGAGACGATC 59.382 52.381 11.82 0.00 39.16 3.69
1192 1330 3.151022 GAGGGTGCGGGAGAGGAG 61.151 72.222 0.00 0.00 0.00 3.69
1287 1436 2.684881 AGCAACGCATGGAGAAATTAGG 59.315 45.455 0.00 0.00 0.00 2.69
1288 1437 3.374988 TCAGCAACGCATGGAGAAATTAG 59.625 43.478 0.00 0.00 0.00 1.73
1291 1440 1.825090 TCAGCAACGCATGGAGAAAT 58.175 45.000 0.00 0.00 0.00 2.17
1292 1441 1.469703 CATCAGCAACGCATGGAGAAA 59.530 47.619 0.00 0.00 0.00 2.52
1361 1516 0.110486 ATGTTCACCGGGTGCTTCTT 59.890 50.000 22.42 9.75 32.98 2.52
1379 1534 0.706433 AAGATGCCCAGGAACACCAT 59.294 50.000 0.00 0.00 0.00 3.55
1492 1647 2.439701 TAGGCGGTGAGGGAGACG 60.440 66.667 0.00 0.00 0.00 4.18
1498 1653 1.218316 GAAGGTGTAGGCGGTGAGG 59.782 63.158 0.00 0.00 0.00 3.86
1660 1815 0.826715 TGAAGGCGGAGAAGATGAGG 59.173 55.000 0.00 0.00 0.00 3.86
1798 1953 2.650813 ATCAAGATCAGTCGGCGGCC 62.651 60.000 8.37 9.54 0.00 6.13
1820 1975 1.651737 TAGGTCTGGCTGGTTTGCTA 58.348 50.000 0.00 0.00 0.00 3.49
1834 1989 2.205074 CAGGCATCGTCATGTTAGGTC 58.795 52.381 0.00 0.00 31.86 3.85
1905 2072 5.105513 TGAGAGCACGTAATGACTTTCCATA 60.106 40.000 0.00 0.00 0.00 2.74
1915 2082 5.536554 AATCTTGTTGAGAGCACGTAATG 57.463 39.130 0.00 0.00 37.93 1.90
1933 2100 9.461312 TTGGCAATACTACATTTCTGTTAATCT 57.539 29.630 0.00 0.00 36.79 2.40
1962 2146 4.769488 TCCCGATGAAAAATGTTGATTGGA 59.231 37.500 0.00 0.00 0.00 3.53
1963 2147 4.864247 GTCCCGATGAAAAATGTTGATTGG 59.136 41.667 0.00 0.00 0.00 3.16
1978 2162 1.202065 CGCTTCATGTTTGTCCCGATG 60.202 52.381 0.00 0.00 0.00 3.84
1979 2163 1.086696 CGCTTCATGTTTGTCCCGAT 58.913 50.000 0.00 0.00 0.00 4.18
1983 2167 3.374988 TGATGATCGCTTCATGTTTGTCC 59.625 43.478 5.54 0.00 45.29 4.02
1987 2171 5.375417 TTGTTGATGATCGCTTCATGTTT 57.625 34.783 5.54 0.00 45.29 2.83
1993 2177 1.739466 TGGCTTGTTGATGATCGCTTC 59.261 47.619 0.00 0.00 0.00 3.86
1994 2178 1.741706 CTGGCTTGTTGATGATCGCTT 59.258 47.619 0.00 0.00 0.00 4.68
1995 2179 1.376543 CTGGCTTGTTGATGATCGCT 58.623 50.000 0.00 0.00 0.00 4.93
1997 2181 1.019673 CCCTGGCTTGTTGATGATCG 58.980 55.000 0.00 0.00 0.00 3.69
2014 2200 0.174162 GGTGTTGATGATGCTTGCCC 59.826 55.000 0.00 0.00 0.00 5.36
2046 2232 9.958125 AGAAAATTCATATCCCTATCCCTTTTT 57.042 29.630 0.00 0.00 0.00 1.94
2057 2243 5.829924 TCCTTGCTGAGAAAATTCATATCCC 59.170 40.000 0.00 0.00 0.00 3.85
2209 2396 2.616842 GTGTTCCAGTGGGTGTAAACAG 59.383 50.000 9.92 0.00 33.10 3.16
2225 2412 4.080863 AGACCCATCTAAGATGGTGTGTTC 60.081 45.833 2.22 0.00 37.48 3.18
2233 2421 6.294473 ACATTAAGCAGACCCATCTAAGATG 58.706 40.000 0.00 0.00 32.25 2.90
2317 2505 9.918630 CATCTCCTGAACACTTGATTTTATTTT 57.081 29.630 0.00 0.00 0.00 1.82
2318 2506 9.300681 TCATCTCCTGAACACTTGATTTTATTT 57.699 29.630 0.00 0.00 0.00 1.40
2319 2507 8.868522 TCATCTCCTGAACACTTGATTTTATT 57.131 30.769 0.00 0.00 0.00 1.40
2320 2508 8.868522 TTCATCTCCTGAACACTTGATTTTAT 57.131 30.769 0.00 0.00 38.97 1.40
2321 2509 8.868522 ATTCATCTCCTGAACACTTGATTTTA 57.131 30.769 0.00 0.00 46.37 1.52
2376 2565 8.112183 AGACTGAATTTCTCTTTTCCCATGTAT 58.888 33.333 0.00 0.00 0.00 2.29
2379 2568 6.618811 CAGACTGAATTTCTCTTTTCCCATG 58.381 40.000 0.00 0.00 0.00 3.66
2385 2574 9.240734 AGATATTGCAGACTGAATTTCTCTTTT 57.759 29.630 6.65 0.00 0.00 2.27
2386 2575 8.804912 AGATATTGCAGACTGAATTTCTCTTT 57.195 30.769 6.65 0.00 0.00 2.52
2450 2641 6.870971 TCGAGGCAATAACAAAGTTTAAGT 57.129 33.333 0.00 0.00 0.00 2.24
2460 2651 7.931407 AGTCATTATTGTATCGAGGCAATAACA 59.069 33.333 25.82 17.97 44.86 2.41
2462 2653 8.367911 AGAGTCATTATTGTATCGAGGCAATAA 58.632 33.333 25.64 25.64 45.59 1.40
2463 2654 7.896811 AGAGTCATTATTGTATCGAGGCAATA 58.103 34.615 15.91 15.91 36.75 1.90
2478 2669 6.883217 AGAACTGAATGTGCAAGAGTCATTAT 59.117 34.615 0.00 0.00 32.90 1.28
2521 2712 6.441088 AAGATAACTGAAGGGTGAAAGAGT 57.559 37.500 0.00 0.00 0.00 3.24
2522 2713 6.372937 GGAAAGATAACTGAAGGGTGAAAGAG 59.627 42.308 0.00 0.00 0.00 2.85
2523 2714 6.183361 TGGAAAGATAACTGAAGGGTGAAAGA 60.183 38.462 0.00 0.00 0.00 2.52
2534 2725 9.793259 AACAGAGTATTTTGGAAAGATAACTGA 57.207 29.630 0.00 0.00 0.00 3.41
2573 2769 2.699846 AGTTGCACAACAATCCAACCAT 59.300 40.909 15.40 0.00 43.47 3.55
2575 2771 2.888834 AGTTGCACAACAATCCAACC 57.111 45.000 15.40 0.00 43.47 3.77
2576 2772 4.744631 CCTAAAGTTGCACAACAATCCAAC 59.255 41.667 15.40 0.00 43.47 3.77
2577 2773 4.646945 TCCTAAAGTTGCACAACAATCCAA 59.353 37.500 15.40 0.00 43.47 3.53
2581 2947 5.852282 AGTTCCTAAAGTTGCACAACAAT 57.148 34.783 15.40 6.34 43.47 2.71
2584 2950 5.529800 TCCTTAGTTCCTAAAGTTGCACAAC 59.470 40.000 5.36 5.36 41.45 3.32
2592 2958 6.352516 CATCAGCATCCTTAGTTCCTAAAGT 58.647 40.000 0.00 0.00 0.00 2.66
2596 2962 3.071602 GCCATCAGCATCCTTAGTTCCTA 59.928 47.826 0.00 0.00 42.97 2.94
2636 3009 1.977854 TGTACTGCTCAGATTGTGGGT 59.022 47.619 3.60 0.00 0.00 4.51
2654 3027 2.158755 AGCACTTGGTTCTGTTAGCTGT 60.159 45.455 0.00 0.00 0.00 4.40
2662 3035 4.130118 AGTTCTGTTAGCACTTGGTTCTG 58.870 43.478 0.00 0.00 0.00 3.02
2665 3038 4.510340 CGTAAGTTCTGTTAGCACTTGGTT 59.490 41.667 4.50 0.00 32.88 3.67
2705 3123 7.597743 GCTGACATCACAAAAATTCAGAAGATT 59.402 33.333 0.00 0.00 33.71 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.