Multiple sequence alignment - TraesCS5A01G437300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G437300 chr5A 100.000 2999 0 0 1 2999 619453326 619456324 0.000000e+00 5539.0
1 TraesCS5A01G437300 chr5A 84.976 1025 109 17 976 1999 631859189 631858209 0.000000e+00 998.0
2 TraesCS5A01G437300 chr5A 78.348 351 68 5 1246 1595 457894205 457894548 1.400000e-53 220.0
3 TraesCS5A01G437300 chr5A 97.101 69 2 0 79 147 128437669 128437601 1.890000e-22 117.0
4 TraesCS5A01G437300 chr5A 78.495 186 34 5 1249 1431 457515000 457515182 1.890000e-22 117.0
5 TraesCS5A01G437300 chr5D 91.538 1820 95 28 686 2491 495308256 495310030 0.000000e+00 2453.0
6 TraesCS5A01G437300 chr5D 86.517 534 62 6 1475 1999 504102502 504101970 2.000000e-161 579.0
7 TraesCS5A01G437300 chr5D 85.625 320 25 12 2686 2999 495310910 495311214 1.740000e-82 316.0
8 TraesCS5A01G437300 chr5D 85.570 298 35 6 213 508 495306161 495306452 3.760000e-79 305.0
9 TraesCS5A01G437300 chr5D 79.703 202 37 4 1247 1446 355796325 355796126 3.120000e-30 143.0
10 TraesCS5A01G437300 chr5D 80.342 117 19 4 2555 2668 495310748 495310863 5.330000e-13 86.1
11 TraesCS5A01G437300 chr5B 93.026 1649 74 16 888 2516 611952769 611954396 0.000000e+00 2370.0
12 TraesCS5A01G437300 chr5B 79.191 519 82 13 1257 1771 251917775 251918271 1.330000e-88 337.0
13 TraesCS5A01G437300 chr5B 86.102 295 35 3 144 438 611934060 611934348 2.240000e-81 313.0
14 TraesCS5A01G437300 chr5B 85.489 317 21 12 2686 2999 611955424 611955718 1.040000e-79 307.0
15 TraesCS5A01G437300 chr5B 78.511 470 59 10 144 610 611951750 611952180 1.370000e-68 270.0
16 TraesCS5A01G437300 chr5B 84.255 235 24 8 605 831 611952400 611952629 1.810000e-52 217.0
17 TraesCS5A01G437300 chr5B 84.956 113 15 2 2555 2666 611954502 611954613 2.440000e-21 113.0
18 TraesCS5A01G437300 chr2D 82.513 955 128 19 1042 1993 593524057 593523139 0.000000e+00 802.0
19 TraesCS5A01G437300 chr2A 81.391 978 135 20 1026 1993 728418667 728417727 0.000000e+00 754.0
20 TraesCS5A01G437300 chr2A 94.203 69 3 1 79 147 658771795 658771728 1.470000e-18 104.0
21 TraesCS5A01G437300 chr2B 81.052 1008 134 37 1001 1993 719984114 719983149 0.000000e+00 750.0
22 TraesCS5A01G437300 chr2B 91.026 78 7 0 1 78 412771434 412771511 4.090000e-19 106.0
23 TraesCS5A01G437300 chrUn 97.436 78 2 0 1 78 23670352 23670429 1.880000e-27 134.0
24 TraesCS5A01G437300 chr7B 94.737 76 4 0 3 78 602647019 602646944 5.250000e-23 119.0
25 TraesCS5A01G437300 chr7B 93.590 78 5 0 1 78 229835895 229835818 1.890000e-22 117.0
26 TraesCS5A01G437300 chr1A 97.059 68 2 0 79 146 474316192 474316259 6.790000e-22 115.0
27 TraesCS5A01G437300 chr6A 95.588 68 3 0 79 146 470368420 470368353 3.160000e-20 110.0
28 TraesCS5A01G437300 chr6A 92.208 77 5 1 79 154 185351210 185351134 1.140000e-19 108.0
29 TraesCS5A01G437300 chr3B 95.588 68 3 0 79 146 811005559 811005626 3.160000e-20 110.0
30 TraesCS5A01G437300 chr3A 95.588 68 3 0 79 146 739553853 739553786 3.160000e-20 110.0
31 TraesCS5A01G437300 chr6D 92.105 76 5 1 79 153 193712248 193712323 4.090000e-19 106.0
32 TraesCS5A01G437300 chr4D 92.105 76 5 1 79 153 99401909 99401834 4.090000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G437300 chr5A 619453326 619456324 2998 False 5539.000 5539 100.00000 1 2999 1 chr5A.!!$F3 2998
1 TraesCS5A01G437300 chr5A 631858209 631859189 980 True 998.000 998 84.97600 976 1999 1 chr5A.!!$R2 1023
2 TraesCS5A01G437300 chr5D 495306161 495311214 5053 False 790.025 2453 85.76875 213 2999 4 chr5D.!!$F1 2786
3 TraesCS5A01G437300 chr5D 504101970 504102502 532 True 579.000 579 86.51700 1475 1999 1 chr5D.!!$R2 524
4 TraesCS5A01G437300 chr5B 611951750 611955718 3968 False 655.400 2370 85.24740 144 2999 5 chr5B.!!$F3 2855
5 TraesCS5A01G437300 chr2D 593523139 593524057 918 True 802.000 802 82.51300 1042 1993 1 chr2D.!!$R1 951
6 TraesCS5A01G437300 chr2A 728417727 728418667 940 True 754.000 754 81.39100 1026 1993 1 chr2A.!!$R2 967
7 TraesCS5A01G437300 chr2B 719983149 719984114 965 True 750.000 750 81.05200 1001 1993 1 chr2B.!!$R1 992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.035439 GAAAGAAGGGCGGTGATCCA 60.035 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 4111 0.107312 GCAGCATCCATCCACTGAGT 60.107 55.0 0.0 0.0 31.67 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.833126 GCAGTACCATTAAGCAATACACG 58.167 43.478 0.00 0.00 0.00 4.49
23 24 4.331717 GCAGTACCATTAAGCAATACACGT 59.668 41.667 0.00 0.00 0.00 4.49
24 25 5.726688 GCAGTACCATTAAGCAATACACGTG 60.727 44.000 15.48 15.48 0.00 4.49
25 26 5.579119 CAGTACCATTAAGCAATACACGTGA 59.421 40.000 25.01 6.34 0.00 4.35
26 27 6.091577 CAGTACCATTAAGCAATACACGTGAA 59.908 38.462 25.01 3.21 0.00 3.18
27 28 5.545658 ACCATTAAGCAATACACGTGAAG 57.454 39.130 25.01 9.60 0.00 3.02
28 29 5.242434 ACCATTAAGCAATACACGTGAAGA 58.758 37.500 25.01 7.32 0.00 2.87
29 30 5.880332 ACCATTAAGCAATACACGTGAAGAT 59.120 36.000 25.01 9.51 0.00 2.40
30 31 6.183360 ACCATTAAGCAATACACGTGAAGATG 60.183 38.462 25.01 15.59 0.00 2.90
31 32 3.747099 AAGCAATACACGTGAAGATGC 57.253 42.857 25.01 23.61 0.00 3.91
32 33 2.009774 AGCAATACACGTGAAGATGCC 58.990 47.619 25.01 10.93 32.95 4.40
33 34 1.267532 GCAATACACGTGAAGATGCCG 60.268 52.381 25.01 6.26 0.00 5.69
34 35 2.267426 CAATACACGTGAAGATGCCGA 58.733 47.619 25.01 0.00 0.00 5.54
35 36 2.209838 ATACACGTGAAGATGCCGAG 57.790 50.000 25.01 0.00 0.00 4.63
36 37 0.172578 TACACGTGAAGATGCCGAGG 59.827 55.000 25.01 0.00 0.00 4.63
37 38 1.215382 CACGTGAAGATGCCGAGGA 59.785 57.895 10.90 0.00 0.00 3.71
38 39 0.389817 CACGTGAAGATGCCGAGGAA 60.390 55.000 10.90 0.00 0.00 3.36
39 40 0.320374 ACGTGAAGATGCCGAGGAAA 59.680 50.000 0.00 0.00 0.00 3.13
40 41 1.002366 CGTGAAGATGCCGAGGAAAG 58.998 55.000 0.00 0.00 0.00 2.62
41 42 1.404181 CGTGAAGATGCCGAGGAAAGA 60.404 52.381 0.00 0.00 0.00 2.52
42 43 2.699954 GTGAAGATGCCGAGGAAAGAA 58.300 47.619 0.00 0.00 0.00 2.52
43 44 2.675348 GTGAAGATGCCGAGGAAAGAAG 59.325 50.000 0.00 0.00 0.00 2.85
44 45 2.284190 GAAGATGCCGAGGAAAGAAGG 58.716 52.381 0.00 0.00 0.00 3.46
45 46 0.543749 AGATGCCGAGGAAAGAAGGG 59.456 55.000 0.00 0.00 0.00 3.95
46 47 1.077429 ATGCCGAGGAAAGAAGGGC 60.077 57.895 0.00 0.00 44.00 5.19
47 48 2.820037 GCCGAGGAAAGAAGGGCG 60.820 66.667 0.00 0.00 33.58 6.13
48 49 2.125106 CCGAGGAAAGAAGGGCGG 60.125 66.667 0.00 0.00 0.00 6.13
49 50 2.663196 CGAGGAAAGAAGGGCGGT 59.337 61.111 0.00 0.00 0.00 5.68
50 51 1.741770 CGAGGAAAGAAGGGCGGTG 60.742 63.158 0.00 0.00 0.00 4.94
51 52 1.677552 GAGGAAAGAAGGGCGGTGA 59.322 57.895 0.00 0.00 0.00 4.02
52 53 0.253327 GAGGAAAGAAGGGCGGTGAT 59.747 55.000 0.00 0.00 0.00 3.06
53 54 0.253327 AGGAAAGAAGGGCGGTGATC 59.747 55.000 0.00 0.00 0.00 2.92
54 55 0.748367 GGAAAGAAGGGCGGTGATCC 60.748 60.000 0.00 0.00 0.00 3.36
55 56 0.035439 GAAAGAAGGGCGGTGATCCA 60.035 55.000 0.00 0.00 0.00 3.41
56 57 0.404040 AAAGAAGGGCGGTGATCCAA 59.596 50.000 0.00 0.00 0.00 3.53
57 58 0.625849 AAGAAGGGCGGTGATCCAAT 59.374 50.000 0.00 0.00 0.00 3.16
58 59 0.181350 AGAAGGGCGGTGATCCAATC 59.819 55.000 0.00 0.00 0.00 2.67
59 60 0.181350 GAAGGGCGGTGATCCAATCT 59.819 55.000 0.00 0.00 0.00 2.40
60 61 0.181350 AAGGGCGGTGATCCAATCTC 59.819 55.000 0.00 0.00 0.00 2.75
61 62 1.595382 GGGCGGTGATCCAATCTCG 60.595 63.158 0.00 0.00 0.00 4.04
62 63 1.595382 GGCGGTGATCCAATCTCGG 60.595 63.158 0.00 0.00 0.00 4.63
63 64 1.441729 GCGGTGATCCAATCTCGGA 59.558 57.895 0.00 0.00 40.07 4.55
64 65 0.179084 GCGGTGATCCAATCTCGGAA 60.179 55.000 0.00 0.00 38.95 4.30
65 66 1.858091 CGGTGATCCAATCTCGGAAG 58.142 55.000 0.00 0.00 38.95 3.46
66 67 1.587547 GGTGATCCAATCTCGGAAGC 58.412 55.000 0.00 0.00 38.95 3.86
67 68 1.212616 GTGATCCAATCTCGGAAGCG 58.787 55.000 0.00 0.00 38.95 4.68
68 69 0.104855 TGATCCAATCTCGGAAGCGG 59.895 55.000 0.00 0.00 38.95 5.52
69 70 1.224722 GATCCAATCTCGGAAGCGGC 61.225 60.000 0.00 0.00 38.95 6.53
70 71 1.690219 ATCCAATCTCGGAAGCGGCT 61.690 55.000 0.00 0.00 38.95 5.52
71 72 1.884926 CCAATCTCGGAAGCGGCTC 60.885 63.158 1.45 0.00 0.00 4.70
72 73 2.105128 AATCTCGGAAGCGGCTCG 59.895 61.111 1.45 3.49 0.00 5.03
73 74 3.432051 AATCTCGGAAGCGGCTCGG 62.432 63.158 1.45 1.98 0.00 4.63
78 79 4.840005 GGAAGCGGCTCGGGAAGG 62.840 72.222 1.45 0.00 0.00 3.46
79 80 4.840005 GAAGCGGCTCGGGAAGGG 62.840 72.222 1.45 0.00 0.00 3.95
83 84 3.702048 CGGCTCGGGAAGGGTCAA 61.702 66.667 0.00 0.00 0.00 3.18
84 85 2.754375 GGCTCGGGAAGGGTCAAA 59.246 61.111 0.00 0.00 0.00 2.69
85 86 1.674651 GGCTCGGGAAGGGTCAAAC 60.675 63.158 0.00 0.00 0.00 2.93
86 87 1.375326 GCTCGGGAAGGGTCAAACT 59.625 57.895 0.00 0.00 0.00 2.66
87 88 0.250770 GCTCGGGAAGGGTCAAACTT 60.251 55.000 0.00 0.00 0.00 2.66
88 89 1.818131 GCTCGGGAAGGGTCAAACTTT 60.818 52.381 0.00 0.00 0.00 2.66
89 90 1.880027 CTCGGGAAGGGTCAAACTTTG 59.120 52.381 0.00 0.00 0.00 2.77
90 91 1.491332 TCGGGAAGGGTCAAACTTTGA 59.509 47.619 0.00 0.00 37.33 2.69
91 92 1.880027 CGGGAAGGGTCAAACTTTGAG 59.120 52.381 4.36 0.00 41.01 3.02
92 93 2.486548 CGGGAAGGGTCAAACTTTGAGA 60.487 50.000 4.36 0.00 41.01 3.27
93 94 3.562182 GGGAAGGGTCAAACTTTGAGAA 58.438 45.455 4.36 0.00 41.01 2.87
94 95 3.570125 GGGAAGGGTCAAACTTTGAGAAG 59.430 47.826 4.36 0.00 41.01 2.85
122 123 9.844790 TTGACTTCAGACAATTTTTATATGCAG 57.155 29.630 0.00 0.00 0.00 4.41
123 124 9.230122 TGACTTCAGACAATTTTTATATGCAGA 57.770 29.630 0.00 0.00 0.00 4.26
124 125 9.713740 GACTTCAGACAATTTTTATATGCAGAG 57.286 33.333 0.00 0.00 0.00 3.35
125 126 9.236006 ACTTCAGACAATTTTTATATGCAGAGT 57.764 29.630 0.00 0.00 0.00 3.24
136 137 9.834628 TTTTTATATGCAGAGTAAAAAGAACCG 57.165 29.630 16.22 0.00 34.30 4.44
137 138 7.548196 TTATATGCAGAGTAAAAAGAACCGG 57.452 36.000 0.00 0.00 0.00 5.28
138 139 3.478857 TGCAGAGTAAAAAGAACCGGA 57.521 42.857 9.46 0.00 0.00 5.14
139 140 3.399330 TGCAGAGTAAAAAGAACCGGAG 58.601 45.455 9.46 0.00 0.00 4.63
154 155 1.386533 CGGAGGGAGTATGTACACGT 58.613 55.000 0.00 0.00 0.00 4.49
161 162 7.144000 GGAGGGAGTATGTACACGTATTTTAG 58.856 42.308 0.00 0.00 0.00 1.85
162 163 7.201857 GGAGGGAGTATGTACACGTATTTTAGT 60.202 40.741 0.00 0.00 0.00 2.24
163 164 7.486647 AGGGAGTATGTACACGTATTTTAGTG 58.513 38.462 0.00 0.00 43.46 2.74
188 190 9.452287 TGTATCTGTTCATTCATTTCAATCTGA 57.548 29.630 0.00 0.00 0.00 3.27
245 247 0.320421 TTGTGAACAGCCGGAGTAGC 60.320 55.000 5.05 0.00 0.00 3.58
248 250 0.108186 TGAACAGCCGGAGTAGCATG 60.108 55.000 5.05 0.00 0.00 4.06
250 252 0.391661 AACAGCCGGAGTAGCATGTG 60.392 55.000 5.05 0.00 0.00 3.21
251 253 1.257750 ACAGCCGGAGTAGCATGTGA 61.258 55.000 5.05 0.00 0.00 3.58
267 269 4.264253 CATGTGATCTTTTGGAGCCAGTA 58.736 43.478 0.00 0.00 0.00 2.74
269 271 4.724399 TGTGATCTTTTGGAGCCAGTAAA 58.276 39.130 0.00 0.00 0.00 2.01
321 325 1.373570 AGCAGAAAATCTGTAGCGCC 58.626 50.000 2.29 0.00 45.94 6.53
361 365 2.599578 CCATATGGGGCTGGCTGC 60.600 66.667 14.52 7.96 41.94 5.25
376 380 1.438651 GCTGCGGAGTTGATACAACA 58.561 50.000 15.29 0.00 0.00 3.33
420 424 5.412594 TGACTCTGCATATTTTGGTGAGTTC 59.587 40.000 1.60 0.00 34.07 3.01
421 425 5.564550 ACTCTGCATATTTTGGTGAGTTCT 58.435 37.500 0.00 0.00 30.33 3.01
427 431 1.981256 TTTTGGTGAGTTCTGAGGCC 58.019 50.000 0.00 0.00 0.00 5.19
438 442 1.257743 TCTGAGGCCGAGCATATACC 58.742 55.000 0.00 0.00 0.00 2.73
440 444 1.446272 GAGGCCGAGCATATACCGC 60.446 63.158 0.00 0.00 0.00 5.68
442 446 2.049433 GCCGAGCATATACCGCGT 60.049 61.111 4.92 0.00 0.00 6.01
481 485 1.511768 GACGAGCTCCCACCACTAC 59.488 63.158 8.47 0.00 0.00 2.73
513 517 3.003897 TGCATTCCCACGAAACAACTAAC 59.996 43.478 0.00 0.00 0.00 2.34
514 518 3.003897 GCATTCCCACGAAACAACTAACA 59.996 43.478 0.00 0.00 0.00 2.41
535 908 2.338577 ATTTTCTCCAGATCCAGGCG 57.661 50.000 0.00 0.00 0.00 5.52
655 2542 4.959723 AGAAACACCATTTTCACCCATTG 58.040 39.130 0.00 0.00 37.86 2.82
665 2552 3.885976 TTCACCCATTGGACCAACTTA 57.114 42.857 9.67 0.00 34.81 2.24
667 2554 4.396357 TCACCCATTGGACCAACTTAAT 57.604 40.909 9.67 0.00 34.81 1.40
669 2556 5.893500 TCACCCATTGGACCAACTTAATTA 58.106 37.500 9.67 0.00 34.81 1.40
670 2557 6.498538 TCACCCATTGGACCAACTTAATTAT 58.501 36.000 9.67 0.00 34.81 1.28
671 2558 6.379703 TCACCCATTGGACCAACTTAATTATG 59.620 38.462 9.67 0.95 34.81 1.90
672 2559 5.128663 ACCCATTGGACCAACTTAATTATGC 59.871 40.000 9.67 0.00 34.81 3.14
673 2560 5.363580 CCCATTGGACCAACTTAATTATGCT 59.636 40.000 9.67 0.00 0.00 3.79
674 2561 6.549364 CCCATTGGACCAACTTAATTATGCTA 59.451 38.462 9.67 0.00 0.00 3.49
675 2562 7.425606 CCATTGGACCAACTTAATTATGCTAC 58.574 38.462 9.67 0.00 0.00 3.58
716 2606 1.307097 GCAAGCAGATCAGGATCCAC 58.693 55.000 15.82 2.33 38.58 4.02
723 2613 2.122768 AGATCAGGATCCACAACCCTC 58.877 52.381 15.82 0.70 38.58 4.30
730 2620 0.178831 ATCCACAACCCTCCTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
780 2679 4.563184 GCTCTTCCATGTTCTACAACTACG 59.437 45.833 0.00 0.00 33.17 3.51
796 2695 9.448294 CTACAACTACGACTAATCAGGATTAAC 57.552 37.037 3.57 1.17 33.34 2.01
867 2766 2.798976 GCAAGAAGCCAATCAACACA 57.201 45.000 0.00 0.00 37.23 3.72
868 2767 3.096489 GCAAGAAGCCAATCAACACAA 57.904 42.857 0.00 0.00 37.23 3.33
869 2768 2.796593 GCAAGAAGCCAATCAACACAAC 59.203 45.455 0.00 0.00 37.23 3.32
870 2769 3.737663 GCAAGAAGCCAATCAACACAACA 60.738 43.478 0.00 0.00 37.23 3.33
871 2770 3.715628 AGAAGCCAATCAACACAACAC 57.284 42.857 0.00 0.00 0.00 3.32
882 2781 2.687935 CAACACAACACCAACCTAGCTT 59.312 45.455 0.00 0.00 0.00 3.74
883 2864 2.297701 ACACAACACCAACCTAGCTTG 58.702 47.619 0.00 0.00 0.00 4.01
932 2932 2.005370 AAGTCTACACGTCCCCTCAA 57.995 50.000 0.00 0.00 0.00 3.02
938 2938 2.995574 ACGTCCCCTCAACCTCGG 60.996 66.667 0.00 0.00 0.00 4.63
1098 3103 0.645868 GCATCTACAAGAACCGCGTC 59.354 55.000 4.92 0.00 0.00 5.19
1234 3242 4.778143 ACATCGACCCCGCCAAGC 62.778 66.667 0.00 0.00 35.37 4.01
1993 4045 0.389817 CATCGCCGAGTTCCTCAACA 60.390 55.000 0.00 0.00 34.60 3.33
2008 4065 5.011586 TCCTCAACAATTGATTGCATCTCA 58.988 37.500 13.59 0.00 41.38 3.27
2042 4099 4.200092 ACTCAGGAAATCGGGAAATAAGC 58.800 43.478 0.00 0.00 0.00 3.09
2085 4142 4.095410 TGGATGCTGCTTTAACATTTCG 57.905 40.909 0.00 0.00 0.00 3.46
2093 4150 3.254657 TGCTTTAACATTTCGGGTTCAGG 59.745 43.478 0.00 0.00 0.00 3.86
2118 4175 4.992688 TCAGATTTGTGTTGGTGTTGTTC 58.007 39.130 0.00 0.00 0.00 3.18
2204 4261 2.368439 TGGGTGCTGTATCAGAATTGC 58.632 47.619 0.66 0.00 32.44 3.56
2242 4299 8.977412 TGGTACATTCATAGTTTCATACAGAGA 58.023 33.333 0.00 0.00 0.00 3.10
2243 4300 9.988815 GGTACATTCATAGTTTCATACAGAGAT 57.011 33.333 0.00 0.00 0.00 2.75
2280 4337 5.063017 TGTTGTATTGGGTCCAAGGTTTA 57.937 39.130 8.49 0.00 39.47 2.01
2293 4350 5.587443 GTCCAAGGTTTACTTTGCGGTATAT 59.413 40.000 0.00 0.00 37.29 0.86
2329 4386 7.935520 AGTTCAAAGTTCAGGAATTCTTTCTC 58.064 34.615 5.23 0.00 32.16 2.87
2333 4390 6.793492 AAGTTCAGGAATTCTTTCTCTTCG 57.207 37.500 5.23 0.00 32.16 3.79
2339 4396 7.106239 TCAGGAATTCTTTCTCTTCGCTAATT 58.894 34.615 5.23 0.00 32.16 1.40
2389 4449 1.938625 TTTCTGCTTGCTTGTTTGGC 58.061 45.000 0.00 0.00 0.00 4.52
2414 4474 1.499056 CGCTTCGCTGCAAGAATGT 59.501 52.632 13.51 0.00 34.07 2.71
2417 4477 1.465354 GCTTCGCTGCAAGAATGTCAG 60.465 52.381 13.51 0.00 34.07 3.51
2423 4483 2.159653 GCTGCAAGAATGTCAGGTTACG 60.160 50.000 0.00 0.00 34.07 3.18
2424 4484 1.804151 TGCAAGAATGTCAGGTTACGC 59.196 47.619 0.00 0.00 0.00 4.42
2425 4485 2.076863 GCAAGAATGTCAGGTTACGCT 58.923 47.619 0.00 0.00 0.00 5.07
2426 4486 2.484264 GCAAGAATGTCAGGTTACGCTT 59.516 45.455 0.00 0.00 0.00 4.68
2427 4487 3.667960 GCAAGAATGTCAGGTTACGCTTG 60.668 47.826 0.00 0.00 35.75 4.01
2428 4488 3.678056 AGAATGTCAGGTTACGCTTGA 57.322 42.857 0.00 0.00 0.00 3.02
2429 4489 4.002906 AGAATGTCAGGTTACGCTTGAA 57.997 40.909 0.00 0.00 34.89 2.69
2430 4490 4.385825 AGAATGTCAGGTTACGCTTGAAA 58.614 39.130 0.00 0.00 34.89 2.69
2431 4491 5.003804 AGAATGTCAGGTTACGCTTGAAAT 58.996 37.500 0.00 0.00 34.89 2.17
2432 4492 4.685169 ATGTCAGGTTACGCTTGAAATG 57.315 40.909 0.00 0.00 34.89 2.32
2433 4493 3.734463 TGTCAGGTTACGCTTGAAATGA 58.266 40.909 0.00 0.00 34.89 2.57
2434 4494 3.745975 TGTCAGGTTACGCTTGAAATGAG 59.254 43.478 0.00 0.00 34.89 2.90
2457 4517 6.049263 GAACGTTTCAAGTTCATTCTGTCT 57.951 37.500 0.46 0.00 45.21 3.41
2480 4540 3.314553 CTTGTTGCATTTCCTCTGCTTG 58.685 45.455 0.00 0.00 40.34 4.01
2520 4655 1.368641 CGAATCGCCATTGTTCAGGA 58.631 50.000 0.00 0.00 0.00 3.86
2531 4666 5.713025 CCATTGTTCAGGAATACTTGTTGG 58.287 41.667 0.00 0.00 0.00 3.77
2538 4673 5.009631 TCAGGAATACTTGTTGGATTGGTG 58.990 41.667 0.00 0.00 0.00 4.17
2539 4674 5.009631 CAGGAATACTTGTTGGATTGGTGA 58.990 41.667 0.00 0.00 0.00 4.02
2540 4675 5.653769 CAGGAATACTTGTTGGATTGGTGAT 59.346 40.000 0.00 0.00 0.00 3.06
2541 4676 5.888161 AGGAATACTTGTTGGATTGGTGATC 59.112 40.000 0.00 0.00 0.00 2.92
2542 4677 5.220854 GGAATACTTGTTGGATTGGTGATCG 60.221 44.000 0.00 0.00 35.49 3.69
2543 4678 3.417069 ACTTGTTGGATTGGTGATCGA 57.583 42.857 0.00 0.00 35.49 3.59
2544 4679 3.750371 ACTTGTTGGATTGGTGATCGAA 58.250 40.909 0.00 0.00 35.49 3.71
2545 4680 3.753272 ACTTGTTGGATTGGTGATCGAAG 59.247 43.478 0.00 0.00 33.80 3.79
2546 4681 3.417069 TGTTGGATTGGTGATCGAAGT 57.583 42.857 0.00 0.00 33.80 3.01
2547 4682 3.750371 TGTTGGATTGGTGATCGAAGTT 58.250 40.909 0.00 0.00 33.80 2.66
2548 4683 3.751175 TGTTGGATTGGTGATCGAAGTTC 59.249 43.478 0.00 0.00 33.80 3.01
2549 4684 3.694043 TGGATTGGTGATCGAAGTTCA 57.306 42.857 3.32 0.00 35.49 3.18
2550 4685 3.599343 TGGATTGGTGATCGAAGTTCAG 58.401 45.455 3.32 0.00 35.49 3.02
2551 4686 2.939103 GGATTGGTGATCGAAGTTCAGG 59.061 50.000 3.32 0.00 35.49 3.86
2552 4687 3.369471 GGATTGGTGATCGAAGTTCAGGA 60.369 47.826 3.32 0.00 35.49 3.86
2553 4688 3.762407 TTGGTGATCGAAGTTCAGGAA 57.238 42.857 3.32 0.00 0.00 3.36
2563 4698 4.761739 TCGAAGTTCAGGAATTCTTTGCAT 59.238 37.500 5.23 0.00 0.00 3.96
2565 4700 5.344128 CGAAGTTCAGGAATTCTTTGCATTG 59.656 40.000 5.23 0.00 0.00 2.82
2566 4701 5.796424 AGTTCAGGAATTCTTTGCATTGT 57.204 34.783 5.23 0.00 0.00 2.71
2570 4705 3.853671 CAGGAATTCTTTGCATTGTACGC 59.146 43.478 5.23 0.00 0.00 4.42
2575 4710 3.536158 TCTTTGCATTGTACGCACTTC 57.464 42.857 0.00 0.00 39.59 3.01
2576 4711 2.875317 TCTTTGCATTGTACGCACTTCA 59.125 40.909 0.00 0.00 39.59 3.02
2589 4724 3.689649 ACGCACTTCAGAGTTCAAAGTTT 59.310 39.130 0.00 0.00 32.54 2.66
2590 4725 4.031028 CGCACTTCAGAGTTCAAAGTTTG 58.969 43.478 9.44 9.44 32.54 2.93
2592 4727 4.354587 CACTTCAGAGTTCAAAGTTTGGC 58.645 43.478 15.47 8.97 32.54 4.52
2597 5541 5.591099 TCAGAGTTCAAAGTTTGGCAATTC 58.409 37.500 15.47 9.46 0.00 2.17
2601 5545 6.758416 AGAGTTCAAAGTTTGGCAATTCTTTC 59.242 34.615 20.24 13.07 0.00 2.62
2608 5552 4.022849 AGTTTGGCAATTCTTTCCTCTTCG 60.023 41.667 0.00 0.00 0.00 3.79
2611 5555 2.489722 GGCAATTCTTTCCTCTTCGCTT 59.510 45.455 0.00 0.00 0.00 4.68
2615 5559 5.968261 GCAATTCTTTCCTCTTCGCTTATTC 59.032 40.000 0.00 0.00 0.00 1.75
2621 5565 8.649973 TCTTTCCTCTTCGCTTATTCTATTTC 57.350 34.615 0.00 0.00 0.00 2.17
2622 5566 8.478877 TCTTTCCTCTTCGCTTATTCTATTTCT 58.521 33.333 0.00 0.00 0.00 2.52
2623 5567 9.751542 CTTTCCTCTTCGCTTATTCTATTTCTA 57.248 33.333 0.00 0.00 0.00 2.10
2624 5568 9.751542 TTTCCTCTTCGCTTATTCTATTTCTAG 57.248 33.333 0.00 0.00 0.00 2.43
2625 5569 7.371936 TCCTCTTCGCTTATTCTATTTCTAGC 58.628 38.462 0.00 0.00 0.00 3.42
2657 5604 0.319083 TGAAATTGCTGCTTGCCTGG 59.681 50.000 0.00 0.00 42.00 4.45
2668 5615 1.739067 CTTGCCTGGTTGGTACTAGC 58.261 55.000 0.00 0.00 38.35 3.42
2669 5616 1.279271 CTTGCCTGGTTGGTACTAGCT 59.721 52.381 0.00 0.00 38.35 3.32
2670 5617 2.241281 TGCCTGGTTGGTACTAGCTA 57.759 50.000 0.00 0.00 38.35 3.32
2671 5618 2.108168 TGCCTGGTTGGTACTAGCTAG 58.892 52.381 19.44 19.44 38.35 3.42
2672 5619 2.291996 TGCCTGGTTGGTACTAGCTAGA 60.292 50.000 27.45 8.20 38.35 2.43
2673 5620 2.362717 GCCTGGTTGGTACTAGCTAGAG 59.637 54.545 27.45 10.88 38.35 2.43
2674 5621 3.633418 CCTGGTTGGTACTAGCTAGAGT 58.367 50.000 27.45 11.21 31.94 3.24
2675 5622 4.024670 CCTGGTTGGTACTAGCTAGAGTT 58.975 47.826 27.45 7.68 31.94 3.01
2676 5623 4.142138 CCTGGTTGGTACTAGCTAGAGTTG 60.142 50.000 27.45 1.17 31.94 3.16
2677 5624 4.669700 TGGTTGGTACTAGCTAGAGTTGA 58.330 43.478 27.45 7.21 0.00 3.18
2678 5625 5.081728 TGGTTGGTACTAGCTAGAGTTGAA 58.918 41.667 27.45 9.77 0.00 2.69
2679 5626 5.541101 TGGTTGGTACTAGCTAGAGTTGAAA 59.459 40.000 27.45 10.30 0.00 2.69
2680 5627 6.100668 GGTTGGTACTAGCTAGAGTTGAAAG 58.899 44.000 27.45 0.00 0.00 2.62
2681 5628 5.326200 TGGTACTAGCTAGAGTTGAAAGC 57.674 43.478 27.45 11.94 36.48 3.51
2684 5631 5.125739 GGTACTAGCTAGAGTTGAAAGCTCA 59.874 44.000 27.45 0.00 42.89 4.26
2703 5686 4.624452 GCTCATTTCAGGTTCATTTGCTTC 59.376 41.667 0.00 0.00 0.00 3.86
2707 5690 4.998671 TTCAGGTTCATTTGCTTCAACA 57.001 36.364 0.00 0.00 0.00 3.33
2711 5694 5.592282 TCAGGTTCATTTGCTTCAACAGTTA 59.408 36.000 0.00 0.00 0.00 2.24
2712 5695 5.687285 CAGGTTCATTTGCTTCAACAGTTAC 59.313 40.000 0.00 0.00 0.00 2.50
2715 5698 3.313803 TCATTTGCTTCAACAGTTACGCA 59.686 39.130 0.56 0.56 0.00 5.24
2728 5711 4.384846 ACAGTTACGCAAAGTTATGTCTCG 59.615 41.667 0.00 0.00 0.00 4.04
2769 5752 0.453390 GCTAGCTGGTTTCACATGGC 59.547 55.000 7.70 0.00 0.00 4.40
2772 5755 0.963962 AGCTGGTTTCACATGGCAAG 59.036 50.000 0.00 0.00 0.00 4.01
2786 5769 5.016173 ACATGGCAAGATACCTTTGCTTAA 58.984 37.500 9.48 0.00 31.60 1.85
2787 5770 5.658190 ACATGGCAAGATACCTTTGCTTAAT 59.342 36.000 9.48 0.37 31.60 1.40
2788 5771 5.835113 TGGCAAGATACCTTTGCTTAATC 57.165 39.130 9.48 0.00 31.60 1.75
2789 5772 4.644685 TGGCAAGATACCTTTGCTTAATCC 59.355 41.667 9.48 0.00 31.60 3.01
2790 5773 4.038042 GGCAAGATACCTTTGCTTAATCCC 59.962 45.833 9.48 0.00 31.60 3.85
2791 5774 4.889995 GCAAGATACCTTTGCTTAATCCCT 59.110 41.667 2.93 0.00 0.00 4.20
2792 5775 5.221126 GCAAGATACCTTTGCTTAATCCCTG 60.221 44.000 2.93 0.00 0.00 4.45
2793 5776 5.717119 AGATACCTTTGCTTAATCCCTGT 57.283 39.130 0.00 0.00 0.00 4.00
2794 5777 6.079712 AGATACCTTTGCTTAATCCCTGTT 57.920 37.500 0.00 0.00 0.00 3.16
2795 5778 5.888161 AGATACCTTTGCTTAATCCCTGTTG 59.112 40.000 0.00 0.00 0.00 3.33
2796 5779 2.562738 ACCTTTGCTTAATCCCTGTTGC 59.437 45.455 0.00 0.00 0.00 4.17
2797 5780 2.827921 CCTTTGCTTAATCCCTGTTGCT 59.172 45.455 0.00 0.00 0.00 3.91
2798 5781 3.259123 CCTTTGCTTAATCCCTGTTGCTT 59.741 43.478 0.00 0.00 0.00 3.91
2799 5782 4.462483 CCTTTGCTTAATCCCTGTTGCTTA 59.538 41.667 0.00 0.00 0.00 3.09
2800 5783 5.393461 CCTTTGCTTAATCCCTGTTGCTTAG 60.393 44.000 0.00 0.00 0.00 2.18
2801 5784 3.016736 TGCTTAATCCCTGTTGCTTAGC 58.983 45.455 0.00 0.00 0.00 3.09
2802 5785 3.282885 GCTTAATCCCTGTTGCTTAGCT 58.717 45.455 5.60 0.00 0.00 3.32
2803 5786 4.080582 TGCTTAATCCCTGTTGCTTAGCTA 60.081 41.667 5.60 0.00 0.00 3.32
2806 5789 3.828875 ATCCCTGTTGCTTAGCTAGTC 57.171 47.619 5.60 0.00 0.00 2.59
2822 5805 3.625764 GCTAGTCGGTTGCCATTTGATTA 59.374 43.478 0.00 0.00 0.00 1.75
2823 5806 4.275936 GCTAGTCGGTTGCCATTTGATTAT 59.724 41.667 0.00 0.00 0.00 1.28
2857 5843 0.889994 TTCCATGTTGCACCATGAGC 59.110 50.000 24.29 0.00 43.99 4.26
2870 5856 1.210234 CCATGAGCTGGTGACCATGTA 59.790 52.381 4.03 0.00 40.49 2.29
2974 5963 5.296748 ACTCTCTTCAGCTTCAGTTTCTTC 58.703 41.667 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.331717 ACGTGTATTGCTTAATGGTACTGC 59.668 41.667 0.00 0.00 0.00 4.40
1 2 5.579119 TCACGTGTATTGCTTAATGGTACTG 59.421 40.000 16.51 0.00 0.00 2.74
2 3 5.726397 TCACGTGTATTGCTTAATGGTACT 58.274 37.500 16.51 0.00 0.00 2.73
3 4 6.311935 TCTTCACGTGTATTGCTTAATGGTAC 59.688 38.462 16.51 0.00 0.00 3.34
4 5 6.399743 TCTTCACGTGTATTGCTTAATGGTA 58.600 36.000 16.51 0.00 0.00 3.25
5 6 5.242434 TCTTCACGTGTATTGCTTAATGGT 58.758 37.500 16.51 0.00 0.00 3.55
6 7 5.794687 TCTTCACGTGTATTGCTTAATGG 57.205 39.130 16.51 0.00 0.00 3.16
7 8 5.678483 GCATCTTCACGTGTATTGCTTAATG 59.322 40.000 16.51 8.52 0.00 1.90
8 9 5.220854 GGCATCTTCACGTGTATTGCTTAAT 60.221 40.000 23.66 5.20 0.00 1.40
9 10 4.094294 GGCATCTTCACGTGTATTGCTTAA 59.906 41.667 23.66 8.15 0.00 1.85
10 11 3.621268 GGCATCTTCACGTGTATTGCTTA 59.379 43.478 23.66 1.34 0.00 3.09
11 12 2.420022 GGCATCTTCACGTGTATTGCTT 59.580 45.455 23.66 3.49 0.00 3.91
12 13 2.009774 GGCATCTTCACGTGTATTGCT 58.990 47.619 23.66 4.60 0.00 3.91
13 14 1.267532 CGGCATCTTCACGTGTATTGC 60.268 52.381 16.51 18.49 0.00 3.56
14 15 2.267426 TCGGCATCTTCACGTGTATTG 58.733 47.619 16.51 10.31 0.00 1.90
15 16 2.540515 CTCGGCATCTTCACGTGTATT 58.459 47.619 16.51 0.00 0.00 1.89
16 17 1.202417 CCTCGGCATCTTCACGTGTAT 60.202 52.381 16.51 5.25 0.00 2.29
17 18 0.172578 CCTCGGCATCTTCACGTGTA 59.827 55.000 16.51 4.82 0.00 2.90
18 19 1.079819 CCTCGGCATCTTCACGTGT 60.080 57.895 16.51 0.00 0.00 4.49
19 20 0.389817 TTCCTCGGCATCTTCACGTG 60.390 55.000 9.94 9.94 0.00 4.49
20 21 0.320374 TTTCCTCGGCATCTTCACGT 59.680 50.000 0.00 0.00 0.00 4.49
21 22 1.002366 CTTTCCTCGGCATCTTCACG 58.998 55.000 0.00 0.00 0.00 4.35
22 23 2.386661 TCTTTCCTCGGCATCTTCAC 57.613 50.000 0.00 0.00 0.00 3.18
23 24 2.355108 CCTTCTTTCCTCGGCATCTTCA 60.355 50.000 0.00 0.00 0.00 3.02
24 25 2.284190 CCTTCTTTCCTCGGCATCTTC 58.716 52.381 0.00 0.00 0.00 2.87
25 26 1.065126 CCCTTCTTTCCTCGGCATCTT 60.065 52.381 0.00 0.00 0.00 2.40
26 27 0.543749 CCCTTCTTTCCTCGGCATCT 59.456 55.000 0.00 0.00 0.00 2.90
27 28 1.098129 GCCCTTCTTTCCTCGGCATC 61.098 60.000 0.00 0.00 39.50 3.91
28 29 1.077429 GCCCTTCTTTCCTCGGCAT 60.077 57.895 0.00 0.00 39.50 4.40
29 30 2.351276 GCCCTTCTTTCCTCGGCA 59.649 61.111 0.00 0.00 39.50 5.69
30 31 2.820037 CGCCCTTCTTTCCTCGGC 60.820 66.667 0.00 0.00 36.21 5.54
31 32 2.125106 CCGCCCTTCTTTCCTCGG 60.125 66.667 0.00 0.00 0.00 4.63
32 33 1.741770 CACCGCCCTTCTTTCCTCG 60.742 63.158 0.00 0.00 0.00 4.63
33 34 0.253327 ATCACCGCCCTTCTTTCCTC 59.747 55.000 0.00 0.00 0.00 3.71
34 35 0.253327 GATCACCGCCCTTCTTTCCT 59.747 55.000 0.00 0.00 0.00 3.36
35 36 0.748367 GGATCACCGCCCTTCTTTCC 60.748 60.000 0.00 0.00 0.00 3.13
36 37 0.035439 TGGATCACCGCCCTTCTTTC 60.035 55.000 0.00 0.00 39.42 2.62
37 38 0.404040 TTGGATCACCGCCCTTCTTT 59.596 50.000 0.00 0.00 39.42 2.52
38 39 0.625849 ATTGGATCACCGCCCTTCTT 59.374 50.000 0.00 0.00 39.42 2.52
39 40 0.181350 GATTGGATCACCGCCCTTCT 59.819 55.000 0.00 0.00 39.42 2.85
40 41 0.181350 AGATTGGATCACCGCCCTTC 59.819 55.000 0.00 0.00 39.42 3.46
41 42 0.181350 GAGATTGGATCACCGCCCTT 59.819 55.000 0.00 0.00 39.42 3.95
42 43 1.832912 GAGATTGGATCACCGCCCT 59.167 57.895 0.00 0.00 39.42 5.19
43 44 1.595382 CGAGATTGGATCACCGCCC 60.595 63.158 0.00 0.00 39.42 6.13
44 45 1.595382 CCGAGATTGGATCACCGCC 60.595 63.158 0.00 0.00 39.42 6.13
45 46 0.179084 TTCCGAGATTGGATCACCGC 60.179 55.000 0.00 0.00 38.00 5.68
46 47 1.858091 CTTCCGAGATTGGATCACCG 58.142 55.000 0.00 0.00 38.00 4.94
47 48 1.587547 GCTTCCGAGATTGGATCACC 58.412 55.000 0.00 0.00 38.00 4.02
48 49 1.212616 CGCTTCCGAGATTGGATCAC 58.787 55.000 0.00 0.00 38.00 3.06
49 50 0.104855 CCGCTTCCGAGATTGGATCA 59.895 55.000 0.00 0.00 38.00 2.92
50 51 1.224722 GCCGCTTCCGAGATTGGATC 61.225 60.000 0.00 0.00 38.00 3.36
51 52 1.227674 GCCGCTTCCGAGATTGGAT 60.228 57.895 0.00 0.00 38.00 3.41
52 53 2.186903 GCCGCTTCCGAGATTGGA 59.813 61.111 0.00 0.00 36.29 3.53
53 54 1.884926 GAGCCGCTTCCGAGATTGG 60.885 63.158 0.00 0.00 36.29 3.16
54 55 2.233654 CGAGCCGCTTCCGAGATTG 61.234 63.158 0.00 0.00 36.29 2.67
55 56 2.105128 CGAGCCGCTTCCGAGATT 59.895 61.111 0.00 0.00 36.29 2.40
56 57 3.905678 CCGAGCCGCTTCCGAGAT 61.906 66.667 3.19 0.00 36.29 2.75
61 62 4.840005 CCTTCCCGAGCCGCTTCC 62.840 72.222 0.00 0.00 0.00 3.46
62 63 4.840005 CCCTTCCCGAGCCGCTTC 62.840 72.222 0.00 0.00 0.00 3.86
66 67 3.248446 TTTGACCCTTCCCGAGCCG 62.248 63.158 0.00 0.00 0.00 5.52
67 68 1.674651 GTTTGACCCTTCCCGAGCC 60.675 63.158 0.00 0.00 0.00 4.70
68 69 0.250770 AAGTTTGACCCTTCCCGAGC 60.251 55.000 0.00 0.00 0.00 5.03
69 70 1.880027 CAAAGTTTGACCCTTCCCGAG 59.120 52.381 10.19 0.00 0.00 4.63
70 71 1.491332 TCAAAGTTTGACCCTTCCCGA 59.509 47.619 14.35 0.00 34.08 5.14
71 72 1.880027 CTCAAAGTTTGACCCTTCCCG 59.120 52.381 14.35 0.00 35.46 5.14
72 73 3.223674 TCTCAAAGTTTGACCCTTCCC 57.776 47.619 14.35 0.00 35.46 3.97
73 74 4.207955 ACTTCTCAAAGTTTGACCCTTCC 58.792 43.478 14.35 0.00 43.28 3.46
96 97 9.844790 CTGCATATAAAAATTGTCTGAAGTCAA 57.155 29.630 0.00 0.00 0.00 3.18
97 98 9.230122 TCTGCATATAAAAATTGTCTGAAGTCA 57.770 29.630 0.00 0.00 0.00 3.41
98 99 9.713740 CTCTGCATATAAAAATTGTCTGAAGTC 57.286 33.333 0.00 0.00 0.00 3.01
99 100 9.236006 ACTCTGCATATAAAAATTGTCTGAAGT 57.764 29.630 0.00 0.00 0.00 3.01
110 111 9.834628 CGGTTCTTTTTACTCTGCATATAAAAA 57.165 29.630 15.93 15.93 36.12 1.94
111 112 8.455682 CCGGTTCTTTTTACTCTGCATATAAAA 58.544 33.333 0.00 0.00 0.00 1.52
112 113 7.825270 TCCGGTTCTTTTTACTCTGCATATAAA 59.175 33.333 0.00 0.00 0.00 1.40
113 114 7.332557 TCCGGTTCTTTTTACTCTGCATATAA 58.667 34.615 0.00 0.00 0.00 0.98
114 115 6.880484 TCCGGTTCTTTTTACTCTGCATATA 58.120 36.000 0.00 0.00 0.00 0.86
115 116 5.741011 TCCGGTTCTTTTTACTCTGCATAT 58.259 37.500 0.00 0.00 0.00 1.78
116 117 5.155278 TCCGGTTCTTTTTACTCTGCATA 57.845 39.130 0.00 0.00 0.00 3.14
117 118 4.003648 CTCCGGTTCTTTTTACTCTGCAT 58.996 43.478 0.00 0.00 0.00 3.96
118 119 3.399330 CTCCGGTTCTTTTTACTCTGCA 58.601 45.455 0.00 0.00 0.00 4.41
119 120 2.742589 CCTCCGGTTCTTTTTACTCTGC 59.257 50.000 0.00 0.00 0.00 4.26
120 121 3.007614 TCCCTCCGGTTCTTTTTACTCTG 59.992 47.826 0.00 0.00 0.00 3.35
121 122 3.245441 TCCCTCCGGTTCTTTTTACTCT 58.755 45.455 0.00 0.00 0.00 3.24
122 123 3.007723 ACTCCCTCCGGTTCTTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
123 124 2.977580 ACTCCCTCCGGTTCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
124 125 3.413846 ACTCCCTCCGGTTCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
125 126 4.533311 ACATACTCCCTCCGGTTCTTTTTA 59.467 41.667 0.00 0.00 0.00 1.52
126 127 3.329814 ACATACTCCCTCCGGTTCTTTTT 59.670 43.478 0.00 0.00 0.00 1.94
127 128 2.910977 ACATACTCCCTCCGGTTCTTTT 59.089 45.455 0.00 0.00 0.00 2.27
128 129 2.547990 ACATACTCCCTCCGGTTCTTT 58.452 47.619 0.00 0.00 0.00 2.52
129 130 2.249309 ACATACTCCCTCCGGTTCTT 57.751 50.000 0.00 0.00 0.00 2.52
130 131 2.024655 TGTACATACTCCCTCCGGTTCT 60.025 50.000 0.00 0.00 0.00 3.01
131 132 2.100418 GTGTACATACTCCCTCCGGTTC 59.900 54.545 0.00 0.00 0.00 3.62
132 133 2.105766 GTGTACATACTCCCTCCGGTT 58.894 52.381 0.00 0.00 0.00 4.44
133 134 1.772836 GTGTACATACTCCCTCCGGT 58.227 55.000 0.00 0.00 0.00 5.28
134 135 0.666913 CGTGTACATACTCCCTCCGG 59.333 60.000 0.00 0.00 0.00 5.14
135 136 1.386533 ACGTGTACATACTCCCTCCG 58.613 55.000 0.00 0.00 0.00 4.63
136 137 5.526506 AAATACGTGTACATACTCCCTCC 57.473 43.478 0.00 0.00 0.00 4.30
137 138 7.646922 CACTAAAATACGTGTACATACTCCCTC 59.353 40.741 0.00 0.00 0.00 4.30
138 139 7.123247 ACACTAAAATACGTGTACATACTCCCT 59.877 37.037 0.00 0.00 42.14 4.20
139 140 7.260603 ACACTAAAATACGTGTACATACTCCC 58.739 38.462 0.00 0.00 42.14 4.30
140 141 9.956720 ATACACTAAAATACGTGTACATACTCC 57.043 33.333 0.00 0.00 45.93 3.85
149 150 8.997621 ATGAACAGATACACTAAAATACGTGT 57.002 30.769 0.00 0.00 45.49 4.49
161 162 9.499585 CAGATTGAAATGAATGAACAGATACAC 57.500 33.333 0.00 0.00 0.00 2.90
162 163 9.452287 TCAGATTGAAATGAATGAACAGATACA 57.548 29.630 0.00 0.00 0.00 2.29
221 223 1.608590 CTCCGGCTGTTCACAAACATT 59.391 47.619 0.00 0.00 44.18 2.71
234 236 0.390860 GATCACATGCTACTCCGGCT 59.609 55.000 0.00 0.00 0.00 5.52
237 239 3.310774 CCAAAAGATCACATGCTACTCCG 59.689 47.826 0.00 0.00 0.00 4.63
245 247 3.087031 ACTGGCTCCAAAAGATCACATG 58.913 45.455 0.00 0.00 0.00 3.21
248 250 4.762251 AGTTTACTGGCTCCAAAAGATCAC 59.238 41.667 0.00 0.00 0.00 3.06
250 252 5.302357 CAGTTTACTGGCTCCAAAAGATC 57.698 43.478 1.88 0.00 40.20 2.75
267 269 4.892002 GGTTGACCGACCCAGTTT 57.108 55.556 0.00 0.00 33.41 2.66
304 306 4.666975 GCACGGCGCTACAGATTTTCTG 62.667 54.545 6.90 3.03 43.33 3.02
321 325 2.631428 CACTGAAACCCGTGCACG 59.369 61.111 31.77 31.77 39.44 5.34
329 333 2.203480 TGGCCTGCCACTGAAACC 60.203 61.111 6.80 0.00 41.89 3.27
352 356 2.593468 TATCAACTCCGCAGCCAGCC 62.593 60.000 0.00 0.00 41.38 4.85
353 357 1.153369 TATCAACTCCGCAGCCAGC 60.153 57.895 0.00 0.00 40.87 4.85
354 358 0.108186 TGTATCAACTCCGCAGCCAG 60.108 55.000 0.00 0.00 0.00 4.85
355 359 0.323302 TTGTATCAACTCCGCAGCCA 59.677 50.000 0.00 0.00 0.00 4.75
361 365 2.012051 GCCCCTGTTGTATCAACTCCG 61.012 57.143 12.66 3.34 0.00 4.63
368 372 2.895372 CGCCGCCCCTGTTGTATC 60.895 66.667 0.00 0.00 0.00 2.24
420 424 0.109086 CGGTATATGCTCGGCCTCAG 60.109 60.000 0.00 0.00 0.00 3.35
421 425 1.964448 CGGTATATGCTCGGCCTCA 59.036 57.895 0.00 0.00 0.00 3.86
427 431 0.237498 TCTCACGCGGTATATGCTCG 59.763 55.000 12.47 4.99 0.00 5.03
438 442 0.368227 GTGCAAGATTCTCTCACGCG 59.632 55.000 3.53 3.53 0.00 6.01
442 446 1.733718 CGCTCGTGCAAGATTCTCTCA 60.734 52.381 10.43 0.00 39.64 3.27
462 466 1.681327 TAGTGGTGGGAGCTCGTCC 60.681 63.158 7.83 10.25 46.10 4.79
513 517 3.181493 CGCCTGGATCTGGAGAAAATTTG 60.181 47.826 0.00 0.00 0.00 2.32
514 518 3.019564 CGCCTGGATCTGGAGAAAATTT 58.980 45.455 0.00 0.00 0.00 1.82
535 908 1.534729 ATGGAAACCTCGAAGCCAAC 58.465 50.000 0.00 0.00 31.53 3.77
623 1223 7.762159 GTGAAAATGGTGTTTCTTTAGTCCAAA 59.238 33.333 0.00 0.00 38.17 3.28
655 2542 6.073927 GCGTAGTAGCATAATTAAGTTGGTCC 60.074 42.308 0.00 0.00 37.05 4.46
672 2559 5.050091 CCAAAATTCATAGGCTGCGTAGTAG 60.050 44.000 8.14 1.41 45.17 2.57
673 2560 4.814234 CCAAAATTCATAGGCTGCGTAGTA 59.186 41.667 8.14 0.00 0.00 1.82
674 2561 3.627577 CCAAAATTCATAGGCTGCGTAGT 59.372 43.478 8.14 0.00 0.00 2.73
675 2562 3.003689 CCCAAAATTCATAGGCTGCGTAG 59.996 47.826 8.14 0.00 0.00 3.51
716 2606 2.675658 TTTTGAGGGAAGGAGGGTTG 57.324 50.000 0.00 0.00 0.00 3.77
747 2637 1.411977 CATGGAAGAGCTCTGACCGAT 59.588 52.381 25.22 19.09 0.00 4.18
748 2638 0.820226 CATGGAAGAGCTCTGACCGA 59.180 55.000 25.22 18.14 0.00 4.69
749 2639 0.534412 ACATGGAAGAGCTCTGACCG 59.466 55.000 25.22 18.05 0.00 4.79
750 2640 2.235898 AGAACATGGAAGAGCTCTGACC 59.764 50.000 24.66 24.66 0.00 4.02
751 2641 3.608316 AGAACATGGAAGAGCTCTGAC 57.392 47.619 19.06 13.82 0.00 3.51
757 2651 4.563184 CGTAGTTGTAGAACATGGAAGAGC 59.437 45.833 5.45 0.00 34.17 4.09
780 2679 8.697507 ATTCCATTGGTTAATCCTGATTAGTC 57.302 34.615 1.86 0.00 35.02 2.59
823 2722 7.254658 GCTGCAACTCAACTACACTACTTAAAA 60.255 37.037 0.00 0.00 0.00 1.52
824 2723 6.202188 GCTGCAACTCAACTACACTACTTAAA 59.798 38.462 0.00 0.00 0.00 1.52
825 2724 5.694910 GCTGCAACTCAACTACACTACTTAA 59.305 40.000 0.00 0.00 0.00 1.85
826 2725 5.221362 TGCTGCAACTCAACTACACTACTTA 60.221 40.000 0.00 0.00 0.00 2.24
827 2726 4.058817 GCTGCAACTCAACTACACTACTT 58.941 43.478 0.00 0.00 0.00 2.24
828 2727 3.069586 TGCTGCAACTCAACTACACTACT 59.930 43.478 0.00 0.00 0.00 2.57
829 2728 3.390135 TGCTGCAACTCAACTACACTAC 58.610 45.455 0.00 0.00 0.00 2.73
830 2729 3.744238 TGCTGCAACTCAACTACACTA 57.256 42.857 0.00 0.00 0.00 2.74
831 2730 2.620251 TGCTGCAACTCAACTACACT 57.380 45.000 0.00 0.00 0.00 3.55
832 2731 2.872245 TCTTGCTGCAACTCAACTACAC 59.128 45.455 11.69 0.00 0.00 2.90
833 2732 3.192541 TCTTGCTGCAACTCAACTACA 57.807 42.857 11.69 0.00 0.00 2.74
834 2733 3.608008 GCTTCTTGCTGCAACTCAACTAC 60.608 47.826 11.69 0.00 38.95 2.73
835 2734 2.549754 GCTTCTTGCTGCAACTCAACTA 59.450 45.455 11.69 0.00 38.95 2.24
840 2739 0.670162 TTGGCTTCTTGCTGCAACTC 59.330 50.000 11.69 0.80 42.39 3.01
867 2766 1.545651 GGCTCAAGCTAGGTTGGTGTT 60.546 52.381 29.13 0.00 41.70 3.32
868 2767 0.036875 GGCTCAAGCTAGGTTGGTGT 59.963 55.000 29.13 0.00 41.70 4.16
869 2768 0.036732 TGGCTCAAGCTAGGTTGGTG 59.963 55.000 29.13 22.88 41.70 4.17
870 2769 0.995024 ATGGCTCAAGCTAGGTTGGT 59.005 50.000 29.13 11.63 41.70 3.67
871 2770 2.134789 AATGGCTCAAGCTAGGTTGG 57.865 50.000 29.13 21.45 41.70 3.77
882 2781 3.582647 TCTGGTCAAGTAGAAATGGCTCA 59.417 43.478 0.00 0.00 0.00 4.26
883 2864 4.187694 CTCTGGTCAAGTAGAAATGGCTC 58.812 47.826 0.00 0.00 0.00 4.70
938 2938 4.717313 GTGGTTGGGACTCCGGGC 62.717 72.222 0.00 0.00 35.24 6.13
942 2944 2.434774 GGTGGTGGTTGGGACTCC 59.565 66.667 0.00 0.00 0.00 3.85
943 2945 1.474332 TACGGTGGTGGTTGGGACTC 61.474 60.000 0.00 0.00 0.00 3.36
970 2972 4.271816 CGAGATCTGGGCGACGGG 62.272 72.222 0.00 0.00 0.00 5.28
1098 3103 2.652496 GAGCCGAAGTAGCGCTCG 60.652 66.667 16.34 12.18 34.64 5.03
1217 3225 4.778143 GCTTGGCGGGGTCGATGT 62.778 66.667 0.00 0.00 39.00 3.06
1231 3239 2.978010 CTTGGCGTTGTCGGGCTT 60.978 61.111 0.00 0.00 37.56 4.35
1234 3242 3.423154 GAGCTTGGCGTTGTCGGG 61.423 66.667 0.00 0.00 37.56 5.14
1240 3248 4.699522 GACGGGGAGCTTGGCGTT 62.700 66.667 0.00 0.00 0.00 4.84
1644 3696 2.036098 TCGTCGGAGGCCACCTTA 59.964 61.111 17.83 2.18 31.76 2.69
1993 4045 5.362717 ACATGGTGATGAGATGCAATCAATT 59.637 36.000 8.83 0.00 38.27 2.32
2008 4065 6.459066 CGATTTCCTGAGTATACATGGTGAT 58.541 40.000 5.50 3.40 0.00 3.06
2042 4099 0.720027 CACTGAGTGATGAAGCTGCG 59.280 55.000 6.79 0.00 35.23 5.18
2054 4111 0.107312 GCAGCATCCATCCACTGAGT 60.107 55.000 0.00 0.00 31.67 3.41
2055 4112 0.180642 AGCAGCATCCATCCACTGAG 59.819 55.000 0.00 0.00 31.67 3.35
2085 4142 4.082125 ACACAAATCTGAATCCTGAACCC 58.918 43.478 0.00 0.00 0.00 4.11
2093 4150 5.591099 ACAACACCAACACAAATCTGAATC 58.409 37.500 0.00 0.00 0.00 2.52
2118 4175 3.828451 ACCTGAATTCTGAACAATGGGTG 59.172 43.478 13.45 0.00 0.00 4.61
2204 4261 9.206690 ACTATGAATGTACCATATATCCTCCAG 57.793 37.037 0.00 0.00 0.00 3.86
2247 4304 8.774183 TGGACCCAATACAACAAGTATACTAAT 58.226 33.333 5.65 0.00 42.56 1.73
2270 4327 2.351706 ACCGCAAAGTAAACCTTGGA 57.648 45.000 0.00 0.00 32.32 3.53
2271 4328 5.355910 ACATATACCGCAAAGTAAACCTTGG 59.644 40.000 0.00 0.00 32.32 3.61
2280 4337 4.753107 CCCGAAATACATATACCGCAAAGT 59.247 41.667 0.00 0.00 0.00 2.66
2293 4350 5.369833 TGAACTTTGAACTCCCGAAATACA 58.630 37.500 0.00 0.00 0.00 2.29
2351 4408 8.560374 AGCAGAAATTTCAGAAACTTGTAGTAC 58.440 33.333 19.99 0.00 0.00 2.73
2354 4411 7.096312 GCAAGCAGAAATTTCAGAAACTTGTAG 60.096 37.037 19.99 5.84 35.56 2.74
2355 4412 6.697019 GCAAGCAGAAATTTCAGAAACTTGTA 59.303 34.615 19.99 0.00 35.56 2.41
2371 4431 0.822811 TGCCAAACAAGCAAGCAGAA 59.177 45.000 0.00 0.00 37.28 3.02
2373 4433 0.103572 AGTGCCAAACAAGCAAGCAG 59.896 50.000 0.00 0.00 43.02 4.24
2374 4434 1.337703 CTAGTGCCAAACAAGCAAGCA 59.662 47.619 0.00 0.00 43.02 3.91
2401 4461 0.877071 AACCTGACATTCTTGCAGCG 59.123 50.000 0.00 0.00 0.00 5.18
2404 4464 1.804151 GCGTAACCTGACATTCTTGCA 59.196 47.619 0.00 0.00 0.00 4.08
2414 4474 4.265904 TCTCATTTCAAGCGTAACCTGA 57.734 40.909 0.00 0.00 0.00 3.86
2417 4477 3.185797 ACGTTCTCATTTCAAGCGTAACC 59.814 43.478 0.00 0.00 0.00 2.85
2426 4486 6.429791 TGAACTTGAAACGTTCTCATTTCA 57.570 33.333 19.77 19.77 41.80 2.69
2427 4487 7.857885 AGAATGAACTTGAAACGTTCTCATTTC 59.142 33.333 0.00 12.61 40.95 2.17
2428 4488 7.645340 CAGAATGAACTTGAAACGTTCTCATTT 59.355 33.333 0.00 4.76 40.95 2.32
2429 4489 7.134815 CAGAATGAACTTGAAACGTTCTCATT 58.865 34.615 0.00 9.34 40.95 2.57
2430 4490 6.260936 ACAGAATGAACTTGAAACGTTCTCAT 59.739 34.615 0.00 1.10 40.95 2.90
2431 4491 5.584649 ACAGAATGAACTTGAAACGTTCTCA 59.415 36.000 0.00 5.17 40.95 3.27
2432 4492 6.018669 AGACAGAATGAACTTGAAACGTTCTC 60.019 38.462 0.00 2.36 40.95 2.87
2433 4493 5.817816 AGACAGAATGAACTTGAAACGTTCT 59.182 36.000 0.00 0.00 40.95 3.01
2434 4494 6.049263 AGACAGAATGAACTTGAAACGTTC 57.951 37.500 0.00 0.00 39.69 3.95
2457 4517 1.888512 GCAGAGGAAATGCAACAAGGA 59.111 47.619 0.00 0.00 43.31 3.36
2480 4540 2.787994 CCTTCCATCCATAGACATGCC 58.212 52.381 0.00 0.00 0.00 4.40
2516 4576 5.009631 TCACCAATCCAACAAGTATTCCTG 58.990 41.667 0.00 0.00 0.00 3.86
2517 4577 5.255397 TCACCAATCCAACAAGTATTCCT 57.745 39.130 0.00 0.00 0.00 3.36
2518 4578 5.220854 CGATCACCAATCCAACAAGTATTCC 60.221 44.000 0.00 0.00 0.00 3.01
2520 4655 5.496556 TCGATCACCAATCCAACAAGTATT 58.503 37.500 0.00 0.00 0.00 1.89
2531 4666 3.861840 TCCTGAACTTCGATCACCAATC 58.138 45.455 0.00 0.00 0.00 2.67
2538 4673 5.106555 TGCAAAGAATTCCTGAACTTCGATC 60.107 40.000 0.65 0.00 0.00 3.69
2539 4674 4.761739 TGCAAAGAATTCCTGAACTTCGAT 59.238 37.500 0.65 0.00 0.00 3.59
2540 4675 4.133820 TGCAAAGAATTCCTGAACTTCGA 58.866 39.130 0.65 0.00 0.00 3.71
2541 4676 4.488126 TGCAAAGAATTCCTGAACTTCG 57.512 40.909 0.65 0.00 0.00 3.79
2542 4677 6.218746 ACAATGCAAAGAATTCCTGAACTTC 58.781 36.000 0.65 0.00 0.00 3.01
2543 4678 6.165700 ACAATGCAAAGAATTCCTGAACTT 57.834 33.333 0.65 0.00 0.00 2.66
2544 4679 5.796424 ACAATGCAAAGAATTCCTGAACT 57.204 34.783 0.65 0.00 0.00 3.01
2545 4680 5.569059 CGTACAATGCAAAGAATTCCTGAAC 59.431 40.000 0.65 0.00 0.00 3.18
2546 4681 5.698832 CGTACAATGCAAAGAATTCCTGAA 58.301 37.500 0.65 0.00 0.00 3.02
2547 4682 4.379394 GCGTACAATGCAAAGAATTCCTGA 60.379 41.667 0.65 0.00 0.00 3.86
2548 4683 3.853671 GCGTACAATGCAAAGAATTCCTG 59.146 43.478 0.65 1.19 0.00 3.86
2549 4684 3.505680 TGCGTACAATGCAAAGAATTCCT 59.494 39.130 0.65 0.00 37.15 3.36
2550 4685 3.608073 GTGCGTACAATGCAAAGAATTCC 59.392 43.478 0.65 0.00 42.45 3.01
2551 4686 4.475944 AGTGCGTACAATGCAAAGAATTC 58.524 39.130 6.38 0.00 42.45 2.17
2552 4687 4.503741 AGTGCGTACAATGCAAAGAATT 57.496 36.364 6.38 0.00 42.45 2.17
2553 4688 4.023279 TGAAGTGCGTACAATGCAAAGAAT 60.023 37.500 6.38 0.00 42.45 2.40
2563 4698 3.446310 TGAACTCTGAAGTGCGTACAA 57.554 42.857 6.38 0.00 33.14 2.41
2565 4700 3.802685 ACTTTGAACTCTGAAGTGCGTAC 59.197 43.478 0.00 0.00 33.14 3.67
2566 4701 4.054780 ACTTTGAACTCTGAAGTGCGTA 57.945 40.909 0.00 0.00 33.14 4.42
2570 4705 4.142403 TGCCAAACTTTGAACTCTGAAGTG 60.142 41.667 2.87 0.00 35.36 3.16
2575 4710 5.594926 AGAATTGCCAAACTTTGAACTCTG 58.405 37.500 2.87 0.00 0.00 3.35
2576 4711 5.859205 AGAATTGCCAAACTTTGAACTCT 57.141 34.783 2.87 0.00 0.00 3.24
2589 4724 1.812571 GCGAAGAGGAAAGAATTGCCA 59.187 47.619 0.00 0.00 0.00 4.92
2590 4725 2.087646 AGCGAAGAGGAAAGAATTGCC 58.912 47.619 0.00 0.00 0.00 4.52
2592 4727 7.313951 AGAATAAGCGAAGAGGAAAGAATTG 57.686 36.000 0.00 0.00 0.00 2.32
2597 5541 8.655651 AGAAATAGAATAAGCGAAGAGGAAAG 57.344 34.615 0.00 0.00 0.00 2.62
2601 5545 7.328249 CAGCTAGAAATAGAATAAGCGAAGAGG 59.672 40.741 0.00 0.00 35.17 3.69
2608 5552 9.535878 ACTTGTACAGCTAGAAATAGAATAAGC 57.464 33.333 0.00 0.00 0.00 3.09
2615 5559 8.988064 TCAGAAACTTGTACAGCTAGAAATAG 57.012 34.615 0.00 0.00 0.00 1.73
2621 5565 6.798959 GCAATTTCAGAAACTTGTACAGCTAG 59.201 38.462 0.00 0.00 0.00 3.42
2622 5566 6.486657 AGCAATTTCAGAAACTTGTACAGCTA 59.513 34.615 0.00 0.00 0.00 3.32
2623 5567 5.300286 AGCAATTTCAGAAACTTGTACAGCT 59.700 36.000 0.00 0.00 0.00 4.24
2624 5568 5.400485 CAGCAATTTCAGAAACTTGTACAGC 59.600 40.000 0.00 0.00 0.00 4.40
2625 5569 5.400485 GCAGCAATTTCAGAAACTTGTACAG 59.600 40.000 0.00 0.00 0.00 2.74
2657 5604 5.577554 GCTTTCAACTCTAGCTAGTACCAAC 59.422 44.000 20.10 0.52 32.26 3.77
2676 5623 5.119743 GCAAATGAACCTGAAATGAGCTTTC 59.880 40.000 0.00 0.00 43.05 2.62
2677 5624 4.992951 GCAAATGAACCTGAAATGAGCTTT 59.007 37.500 0.00 0.00 0.00 3.51
2678 5625 4.282703 AGCAAATGAACCTGAAATGAGCTT 59.717 37.500 0.00 0.00 0.00 3.74
2679 5626 3.830755 AGCAAATGAACCTGAAATGAGCT 59.169 39.130 0.00 0.00 0.00 4.09
2680 5627 4.184079 AGCAAATGAACCTGAAATGAGC 57.816 40.909 0.00 0.00 0.00 4.26
2681 5628 5.775686 TGAAGCAAATGAACCTGAAATGAG 58.224 37.500 0.00 0.00 0.00 2.90
2682 5629 5.787953 TGAAGCAAATGAACCTGAAATGA 57.212 34.783 0.00 0.00 0.00 2.57
2684 5631 5.916318 TGTTGAAGCAAATGAACCTGAAAT 58.084 33.333 0.00 0.00 0.00 2.17
2690 5673 4.675114 CGTAACTGTTGAAGCAAATGAACC 59.325 41.667 2.69 0.00 0.00 3.62
2703 5686 5.985781 AGACATAACTTTGCGTAACTGTTG 58.014 37.500 2.69 2.86 0.00 3.33
2707 5690 4.553323 ACGAGACATAACTTTGCGTAACT 58.447 39.130 0.00 0.00 0.00 2.24
2711 5694 4.170292 ACTACGAGACATAACTTTGCGT 57.830 40.909 0.00 0.00 0.00 5.24
2712 5695 4.721226 GCAACTACGAGACATAACTTTGCG 60.721 45.833 0.00 0.00 0.00 4.85
2715 5698 6.398918 AGATGCAACTACGAGACATAACTTT 58.601 36.000 0.00 0.00 0.00 2.66
2728 5711 2.977772 AGCAGAGGAGATGCAACTAC 57.022 50.000 0.00 0.00 46.31 2.73
2759 5742 4.321899 GCAAAGGTATCTTGCCATGTGAAA 60.322 41.667 0.00 0.00 32.75 2.69
2769 5752 5.888161 ACAGGGATTAAGCAAAGGTATCTTG 59.112 40.000 0.00 0.00 32.75 3.02
2772 5755 5.450550 GCAACAGGGATTAAGCAAAGGTATC 60.451 44.000 0.00 0.00 0.00 2.24
2786 5769 2.101582 CGACTAGCTAAGCAACAGGGAT 59.898 50.000 0.00 0.00 0.00 3.85
2787 5770 1.476891 CGACTAGCTAAGCAACAGGGA 59.523 52.381 0.00 0.00 0.00 4.20
2788 5771 1.471676 CCGACTAGCTAAGCAACAGGG 60.472 57.143 0.00 0.00 0.00 4.45
2789 5772 1.204941 ACCGACTAGCTAAGCAACAGG 59.795 52.381 0.00 0.00 0.00 4.00
2790 5773 2.656560 ACCGACTAGCTAAGCAACAG 57.343 50.000 0.00 0.00 0.00 3.16
2791 5774 2.683968 CAACCGACTAGCTAAGCAACA 58.316 47.619 0.00 0.00 0.00 3.33
2792 5775 1.393883 GCAACCGACTAGCTAAGCAAC 59.606 52.381 0.00 0.00 0.00 4.17
2793 5776 1.674817 GGCAACCGACTAGCTAAGCAA 60.675 52.381 0.00 0.00 0.00 3.91
2794 5777 0.108329 GGCAACCGACTAGCTAAGCA 60.108 55.000 0.00 0.00 0.00 3.91
2795 5778 0.108329 TGGCAACCGACTAGCTAAGC 60.108 55.000 0.00 0.00 0.00 3.09
2796 5779 2.604046 ATGGCAACCGACTAGCTAAG 57.396 50.000 0.00 0.00 0.00 2.18
2797 5780 3.006940 CAAATGGCAACCGACTAGCTAA 58.993 45.455 0.00 0.00 0.00 3.09
2798 5781 2.235155 TCAAATGGCAACCGACTAGCTA 59.765 45.455 0.00 0.00 0.00 3.32
2799 5782 1.003118 TCAAATGGCAACCGACTAGCT 59.997 47.619 0.00 0.00 0.00 3.32
2800 5783 1.448985 TCAAATGGCAACCGACTAGC 58.551 50.000 0.00 0.00 0.00 3.42
2801 5784 6.377327 AATAATCAAATGGCAACCGACTAG 57.623 37.500 0.00 0.00 0.00 2.57
2802 5785 7.867305 TTAATAATCAAATGGCAACCGACTA 57.133 32.000 0.00 0.00 0.00 2.59
2803 5786 6.767524 TTAATAATCAAATGGCAACCGACT 57.232 33.333 0.00 0.00 0.00 4.18
2806 5789 5.925969 GGGATTAATAATCAAATGGCAACCG 59.074 40.000 14.19 0.00 39.71 4.44
2822 5805 5.831103 ACATGGAAGACAACAGGGATTAAT 58.169 37.500 0.00 0.00 0.00 1.40
2823 5806 5.255397 ACATGGAAGACAACAGGGATTAA 57.745 39.130 0.00 0.00 0.00 1.40
2870 5856 1.961394 TGACTTACAGAACCGAGCACT 59.039 47.619 0.00 0.00 0.00 4.40
2930 5919 8.165239 AGAGTTGTTTTATACATCTTGCAACA 57.835 30.769 0.00 0.00 37.02 3.33
2974 5963 5.053145 ACACTAGAGTTGAAGACTTTGCTG 58.947 41.667 0.00 0.00 39.19 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.