Multiple sequence alignment - TraesCS5A01G437200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G437200 chr5A 100.000 3117 0 0 1 3117 619358809 619361925 0.000000e+00 5757.0
1 TraesCS5A01G437200 chr5A 100.000 154 0 0 3396 3549 619362204 619362357 5.800000e-73 285.0
2 TraesCS5A01G437200 chr5A 82.353 272 44 4 98 367 620750844 620750575 2.130000e-57 233.0
3 TraesCS5A01G437200 chr5A 75.294 255 42 14 443 685 103902785 103902540 6.270000e-18 102.0
4 TraesCS5A01G437200 chr5B 93.224 2066 114 16 682 2739 611868207 611870254 0.000000e+00 3016.0
5 TraesCS5A01G437200 chr5B 80.882 272 48 4 98 367 94409546 94409815 9.980000e-51 211.0
6 TraesCS5A01G437200 chr5B 80.147 272 49 5 98 367 328243230 328243498 7.770000e-47 198.0
7 TraesCS5A01G437200 chr5B 88.112 143 16 1 673 814 611825654 611825796 6.090000e-38 169.0
8 TraesCS5A01G437200 chr5D 92.000 2025 120 22 682 2697 495290195 495292186 0.000000e+00 2804.0
9 TraesCS5A01G437200 chr2B 79.079 1520 290 24 1007 2506 405262340 405263851 0.000000e+00 1020.0
10 TraesCS5A01G437200 chr2D 79.041 1522 286 26 1007 2506 337923082 337924592 0.000000e+00 1013.0
11 TraesCS5A01G437200 chr2D 79.032 372 56 15 1 367 139442415 139442769 5.920000e-58 235.0
12 TraesCS5A01G437200 chr6A 80.428 981 128 20 1598 2568 592821757 592820831 0.000000e+00 689.0
13 TraesCS5A01G437200 chr2A 81.746 504 89 3 1007 1509 448153110 448153611 5.480000e-113 418.0
14 TraesCS5A01G437200 chr1A 81.452 496 92 0 1012 1507 53997352 53996857 1.190000e-109 407.0
15 TraesCS5A01G437200 chr1A 81.985 272 45 4 98 367 565404923 565404654 9.910000e-56 228.0
16 TraesCS5A01G437200 chr1B 79.839 496 100 0 1012 1507 90544307 90543812 2.600000e-96 363.0
17 TraesCS5A01G437200 chr6B 81.793 368 59 7 5 367 208027297 208027661 5.760000e-78 302.0
18 TraesCS5A01G437200 chr6B 78.599 257 38 13 443 685 208027716 208027969 1.710000e-33 154.0
19 TraesCS5A01G437200 chr7A 75.581 516 113 10 1906 2412 27605592 27606103 3.540000e-60 243.0
20 TraesCS5A01G437200 chr4A 81.126 302 53 4 62 361 656814028 656814327 4.580000e-59 239.0
21 TraesCS5A01G437200 chr1D 79.630 324 66 0 1012 1335 54927284 54926961 2.130000e-57 233.0
22 TraesCS5A01G437200 chr4B 79.938 324 55 7 98 413 552775956 552775635 2.760000e-56 230.0
23 TraesCS5A01G437200 chr3A 81.362 279 43 9 60 333 602901534 602901808 5.970000e-53 219.0
24 TraesCS5A01G437200 chr3A 79.429 175 28 7 521 687 30095055 30095229 2.240000e-22 117.0
25 TraesCS5A01G437200 chr7D 89.916 119 12 0 1037 1155 25898627 25898509 1.710000e-33 154.0
26 TraesCS5A01G437200 chr3D 77.174 184 34 8 513 688 21588695 21588878 2.250000e-17 100.0
27 TraesCS5A01G437200 chr7B 97.436 39 1 0 371 409 67668125 67668163 2.290000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G437200 chr5A 619358809 619362357 3548 False 3021 5757 100.000 1 3549 2 chr5A.!!$F1 3548
1 TraesCS5A01G437200 chr5B 611868207 611870254 2047 False 3016 3016 93.224 682 2739 1 chr5B.!!$F4 2057
2 TraesCS5A01G437200 chr5D 495290195 495292186 1991 False 2804 2804 92.000 682 2697 1 chr5D.!!$F1 2015
3 TraesCS5A01G437200 chr2B 405262340 405263851 1511 False 1020 1020 79.079 1007 2506 1 chr2B.!!$F1 1499
4 TraesCS5A01G437200 chr2D 337923082 337924592 1510 False 1013 1013 79.041 1007 2506 1 chr2D.!!$F2 1499
5 TraesCS5A01G437200 chr6A 592820831 592821757 926 True 689 689 80.428 1598 2568 1 chr6A.!!$R1 970
6 TraesCS5A01G437200 chr2A 448153110 448153611 501 False 418 418 81.746 1007 1509 1 chr2A.!!$F1 502
7 TraesCS5A01G437200 chr6B 208027297 208027969 672 False 228 302 80.196 5 685 2 chr6B.!!$F1 680
8 TraesCS5A01G437200 chr7A 27605592 27606103 511 False 243 243 75.581 1906 2412 1 chr7A.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 470 0.026803 GCTCATCATTCACGCCGAAC 59.973 55.0 0.00 0.00 36.12 3.95 F
459 491 0.173708 GTCTCCTCACGTGGCCTTAG 59.826 60.0 17.00 4.87 0.00 2.18 F
517 551 0.388520 GATGCGGTTTGTTCTTGGCC 60.389 55.0 0.00 0.00 0.00 5.36 F
652 698 0.396001 GGACTAGGTTCGAGCTCCCT 60.396 60.0 13.69 13.69 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1417 1.474879 TCATAGCCGAACGACATGACA 59.525 47.619 0.00 0.0 0.00 3.58 R
1395 1444 2.586357 GGCACGCCGATCTCCTTC 60.586 66.667 0.00 0.0 0.00 3.46 R
2507 2592 1.275010 TCTTGCCAAGAGTACATCGCA 59.725 47.619 2.24 0.0 32.71 5.10 R
2619 2704 0.391661 TCTCAAACCTGCCTGCGATC 60.392 55.000 0.00 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.004745 GATGGTCCCTGTCATTGGTGT 59.995 52.381 0.00 0.00 0.00 4.16
33 35 1.066215 TGTCATTGGTGTGAGGGATCG 60.066 52.381 0.00 0.00 0.00 3.69
36 38 0.253044 ATTGGTGTGAGGGATCGGTG 59.747 55.000 0.00 0.00 0.00 4.94
49 51 1.819288 GATCGGTGTCCTTCTCAGTGA 59.181 52.381 0.00 0.00 0.00 3.41
55 57 0.674534 GTCCTTCTCAGTGACGGTGT 59.325 55.000 0.00 0.00 35.75 4.16
64 66 2.151202 CAGTGACGGTGTTATGCCTTT 58.849 47.619 0.00 0.00 0.00 3.11
67 69 1.202830 TGACGGTGTTATGCCTTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
71 73 2.352323 CGGTGTTATGCCTTTGGTTTCC 60.352 50.000 0.00 0.00 0.00 3.13
74 76 0.523966 TTATGCCTTTGGTTTCCGCG 59.476 50.000 0.00 0.00 0.00 6.46
75 77 0.321741 TATGCCTTTGGTTTCCGCGA 60.322 50.000 8.23 0.00 0.00 5.87
76 78 0.965363 ATGCCTTTGGTTTCCGCGAT 60.965 50.000 8.23 0.00 0.00 4.58
78 80 0.038618 GCCTTTGGTTTCCGCGATTT 60.039 50.000 8.23 0.00 0.00 2.17
80 82 1.539827 CCTTTGGTTTCCGCGATTTCT 59.460 47.619 8.23 0.00 0.00 2.52
81 83 2.745281 CCTTTGGTTTCCGCGATTTCTA 59.255 45.455 8.23 0.00 0.00 2.10
90 93 2.135933 CCGCGATTTCTATCCTTGACC 58.864 52.381 8.23 0.00 0.00 4.02
98 101 6.868864 CGATTTCTATCCTTGACCGATGTATT 59.131 38.462 0.00 0.00 0.00 1.89
102 105 2.627945 TCCTTGACCGATGTATTGTGC 58.372 47.619 0.00 0.00 0.00 4.57
104 107 3.009723 CCTTGACCGATGTATTGTGCTT 58.990 45.455 0.00 0.00 0.00 3.91
106 109 3.610040 TGACCGATGTATTGTGCTTCT 57.390 42.857 0.00 0.00 0.00 2.85
122 125 3.055094 TGCTTCTATTTTCGGCCTTCTCT 60.055 43.478 0.00 0.00 0.00 3.10
123 126 3.311048 GCTTCTATTTTCGGCCTTCTCTG 59.689 47.826 0.00 0.00 0.00 3.35
125 128 3.861840 TCTATTTTCGGCCTTCTCTGTG 58.138 45.455 0.00 0.00 0.00 3.66
126 129 2.859165 ATTTTCGGCCTTCTCTGTGA 57.141 45.000 0.00 0.00 0.00 3.58
131 134 1.623311 TCGGCCTTCTCTGTGATTCAA 59.377 47.619 0.00 0.00 0.00 2.69
133 136 1.734465 GGCCTTCTCTGTGATTCAACG 59.266 52.381 0.00 0.00 0.00 4.10
152 155 1.332904 CGCCTTCGTTCAACAACTCAC 60.333 52.381 0.00 0.00 0.00 3.51
153 156 1.940613 GCCTTCGTTCAACAACTCACT 59.059 47.619 0.00 0.00 0.00 3.41
154 157 2.354821 GCCTTCGTTCAACAACTCACTT 59.645 45.455 0.00 0.00 0.00 3.16
156 159 3.871594 CCTTCGTTCAACAACTCACTTCT 59.128 43.478 0.00 0.00 0.00 2.85
158 161 3.857052 TCGTTCAACAACTCACTTCTGT 58.143 40.909 0.00 0.00 0.00 3.41
169 172 3.763897 ACTCACTTCTGTTGTTTTGCCTT 59.236 39.130 0.00 0.00 0.00 4.35
177 180 3.037833 GTTTTGCCTTGCCGCTGC 61.038 61.111 0.00 0.00 38.26 5.25
178 181 3.225798 TTTTGCCTTGCCGCTGCT 61.226 55.556 0.70 0.00 38.71 4.24
179 182 3.211564 TTTTGCCTTGCCGCTGCTC 62.212 57.895 0.70 0.00 38.71 4.26
180 183 4.953010 TTGCCTTGCCGCTGCTCA 62.953 61.111 0.70 0.00 38.71 4.26
181 184 4.728110 TGCCTTGCCGCTGCTCAT 62.728 61.111 0.70 0.00 38.71 2.90
184 187 2.758089 CCTTGCCGCTGCTCATGAC 61.758 63.158 0.70 0.00 38.71 3.06
193 196 0.671472 CTGCTCATGACGGTGCTTGA 60.671 55.000 6.27 0.00 0.00 3.02
199 202 0.320771 ATGACGGTGCTTGAGTGGTC 60.321 55.000 0.00 0.00 0.00 4.02
234 237 1.227823 TGGGTCCGCTCTTGTTGTG 60.228 57.895 0.00 0.00 0.00 3.33
238 241 1.140816 GTCCGCTCTTGTTGTGTCTC 58.859 55.000 0.00 0.00 0.00 3.36
245 248 1.843851 TCTTGTTGTGTCTCCTTGGGT 59.156 47.619 0.00 0.00 0.00 4.51
276 279 1.901833 CCTTGATTTGGGTTCTTGGGG 59.098 52.381 0.00 0.00 0.00 4.96
293 296 2.613506 GGAACCACTTTGCCGTCCG 61.614 63.158 0.00 0.00 0.00 4.79
298 301 3.936203 ACTTTGCCGTCCGCCAGA 61.936 61.111 0.00 0.00 36.24 3.86
300 303 3.883744 CTTTGCCGTCCGCCAGAGT 62.884 63.158 0.00 0.00 36.24 3.24
301 304 4.680237 TTGCCGTCCGCCAGAGTG 62.680 66.667 0.00 0.00 36.24 3.51
319 322 3.785859 GCACCCATCGAGCCTGGA 61.786 66.667 5.07 0.00 35.70 3.86
325 328 1.202855 CCCATCGAGCCTGGATGAAAT 60.203 52.381 17.19 0.00 43.07 2.17
333 336 2.578021 AGCCTGGATGAAATGGTAGTGT 59.422 45.455 0.00 0.00 0.00 3.55
339 342 4.044065 TGGATGAAATGGTAGTGTCCCTTT 59.956 41.667 0.00 0.00 0.00 3.11
340 343 4.399303 GGATGAAATGGTAGTGTCCCTTTG 59.601 45.833 0.00 0.00 0.00 2.77
347 350 1.412453 TAGTGTCCCTTTGTGGCGGT 61.412 55.000 0.00 0.00 0.00 5.68
349 352 2.983592 GTCCCTTTGTGGCGGTGG 60.984 66.667 0.00 0.00 0.00 4.61
380 412 1.424403 TGTTGCGGACACAATACTCG 58.576 50.000 0.00 0.00 32.00 4.18
383 415 1.708027 GCGGACACAATACTCGCAC 59.292 57.895 0.00 0.00 44.87 5.34
384 416 1.988409 CGGACACAATACTCGCACG 59.012 57.895 0.00 0.00 0.00 5.34
398 430 2.358737 CACGGTGGTGCCCTTCTC 60.359 66.667 0.00 0.00 37.35 2.87
399 431 3.637273 ACGGTGGTGCCCTTCTCC 61.637 66.667 0.00 0.00 0.00 3.71
400 432 3.322466 CGGTGGTGCCCTTCTCCT 61.322 66.667 0.00 0.00 0.00 3.69
401 433 2.352805 GGTGGTGCCCTTCTCCTG 59.647 66.667 0.00 0.00 0.00 3.86
402 434 2.529744 GGTGGTGCCCTTCTCCTGT 61.530 63.158 0.00 0.00 0.00 4.00
403 435 1.302832 GTGGTGCCCTTCTCCTGTG 60.303 63.158 0.00 0.00 0.00 3.66
404 436 2.352805 GGTGCCCTTCTCCTGTGG 59.647 66.667 0.00 0.00 0.00 4.17
405 437 2.360475 GTGCCCTTCTCCTGTGGC 60.360 66.667 0.00 0.00 44.27 5.01
406 438 3.650950 TGCCCTTCTCCTGTGGCC 61.651 66.667 0.00 0.00 43.35 5.36
407 439 3.334054 GCCCTTCTCCTGTGGCCT 61.334 66.667 3.32 0.00 37.94 5.19
408 440 2.911926 GCCCTTCTCCTGTGGCCTT 61.912 63.158 3.32 0.00 37.94 4.35
409 441 1.301293 CCCTTCTCCTGTGGCCTTC 59.699 63.158 3.32 0.00 0.00 3.46
410 442 1.078848 CCTTCTCCTGTGGCCTTCG 60.079 63.158 3.32 0.00 0.00 3.79
411 443 1.674057 CTTCTCCTGTGGCCTTCGT 59.326 57.895 3.32 0.00 0.00 3.85
412 444 0.035458 CTTCTCCTGTGGCCTTCGTT 59.965 55.000 3.32 0.00 0.00 3.85
413 445 0.472471 TTCTCCTGTGGCCTTCGTTT 59.528 50.000 3.32 0.00 0.00 3.60
414 446 0.472471 TCTCCTGTGGCCTTCGTTTT 59.528 50.000 3.32 0.00 0.00 2.43
415 447 1.133915 TCTCCTGTGGCCTTCGTTTTT 60.134 47.619 3.32 0.00 0.00 1.94
416 448 2.105134 TCTCCTGTGGCCTTCGTTTTTA 59.895 45.455 3.32 0.00 0.00 1.52
417 449 3.081804 CTCCTGTGGCCTTCGTTTTTAT 58.918 45.455 3.32 0.00 0.00 1.40
418 450 4.020039 TCTCCTGTGGCCTTCGTTTTTATA 60.020 41.667 3.32 0.00 0.00 0.98
419 451 4.258543 TCCTGTGGCCTTCGTTTTTATAG 58.741 43.478 3.32 0.00 0.00 1.31
420 452 3.181500 CCTGTGGCCTTCGTTTTTATAGC 60.181 47.826 3.32 0.00 0.00 2.97
421 453 3.681593 TGTGGCCTTCGTTTTTATAGCT 58.318 40.909 3.32 0.00 0.00 3.32
422 454 3.687698 TGTGGCCTTCGTTTTTATAGCTC 59.312 43.478 3.32 0.00 0.00 4.09
423 455 3.687698 GTGGCCTTCGTTTTTATAGCTCA 59.312 43.478 3.32 0.00 0.00 4.26
424 456 4.335594 GTGGCCTTCGTTTTTATAGCTCAT 59.664 41.667 3.32 0.00 0.00 2.90
425 457 4.574828 TGGCCTTCGTTTTTATAGCTCATC 59.425 41.667 3.32 0.00 0.00 2.92
426 458 4.574828 GGCCTTCGTTTTTATAGCTCATCA 59.425 41.667 0.00 0.00 0.00 3.07
427 459 5.239525 GGCCTTCGTTTTTATAGCTCATCAT 59.760 40.000 0.00 0.00 0.00 2.45
428 460 6.238759 GGCCTTCGTTTTTATAGCTCATCATT 60.239 38.462 0.00 0.00 0.00 2.57
429 461 6.853362 GCCTTCGTTTTTATAGCTCATCATTC 59.147 38.462 0.00 0.00 0.00 2.67
430 462 7.467267 GCCTTCGTTTTTATAGCTCATCATTCA 60.467 37.037 0.00 0.00 0.00 2.57
431 463 7.852945 CCTTCGTTTTTATAGCTCATCATTCAC 59.147 37.037 0.00 0.00 0.00 3.18
432 464 6.933130 TCGTTTTTATAGCTCATCATTCACG 58.067 36.000 0.00 0.00 0.00 4.35
433 465 5.617187 CGTTTTTATAGCTCATCATTCACGC 59.383 40.000 0.00 0.00 0.00 5.34
434 466 5.673337 TTTTATAGCTCATCATTCACGCC 57.327 39.130 0.00 0.00 0.00 5.68
435 467 1.788258 ATAGCTCATCATTCACGCCG 58.212 50.000 0.00 0.00 0.00 6.46
436 468 0.744281 TAGCTCATCATTCACGCCGA 59.256 50.000 0.00 0.00 0.00 5.54
437 469 0.108186 AGCTCATCATTCACGCCGAA 60.108 50.000 0.00 0.00 38.22 4.30
438 470 0.026803 GCTCATCATTCACGCCGAAC 59.973 55.000 0.00 0.00 36.12 3.95
439 471 1.358877 CTCATCATTCACGCCGAACA 58.641 50.000 0.00 0.00 36.12 3.18
440 472 1.325640 CTCATCATTCACGCCGAACAG 59.674 52.381 0.00 0.00 36.12 3.16
441 473 1.078709 CATCATTCACGCCGAACAGT 58.921 50.000 0.00 0.00 36.12 3.55
442 474 1.061131 CATCATTCACGCCGAACAGTC 59.939 52.381 0.00 0.00 36.12 3.51
448 480 1.901948 ACGCCGAACAGTCTCCTCA 60.902 57.895 0.00 0.00 0.00 3.86
459 491 0.173708 GTCTCCTCACGTGGCCTTAG 59.826 60.000 17.00 4.87 0.00 2.18
471 503 3.056322 CGTGGCCTTAGTAGGTTAGTTGT 60.056 47.826 3.32 0.00 44.00 3.32
482 514 7.700022 AGTAGGTTAGTTGTTGTAGGTCTAG 57.300 40.000 0.00 0.00 0.00 2.43
488 520 1.226888 GTTGTAGGTCTAGCGGCGG 60.227 63.158 9.78 0.00 0.00 6.13
497 531 3.740128 CTAGCGGCGGTCTGGCAAT 62.740 63.158 17.55 0.00 45.16 3.56
500 534 2.514592 CGGCGGTCTGGCAATGAT 60.515 61.111 0.00 0.00 45.16 2.45
517 551 0.388520 GATGCGGTTTGTTCTTGGCC 60.389 55.000 0.00 0.00 0.00 5.36
553 597 5.974108 TGTTCTACTTAGCACCTTGTATCC 58.026 41.667 0.00 0.00 0.00 2.59
554 598 5.105064 TGTTCTACTTAGCACCTTGTATCCC 60.105 44.000 0.00 0.00 0.00 3.85
587 631 9.442047 CATTTTCCCCTATTCTCTATGTATGTC 57.558 37.037 0.00 0.00 0.00 3.06
596 640 2.820197 CTCTATGTATGTCGCTGCCCTA 59.180 50.000 0.00 0.00 0.00 3.53
604 648 2.884320 TGTCGCTGCCCTATAATCCTA 58.116 47.619 0.00 0.00 0.00 2.94
605 649 2.561419 TGTCGCTGCCCTATAATCCTAC 59.439 50.000 0.00 0.00 0.00 3.18
606 650 2.094130 GTCGCTGCCCTATAATCCTACC 60.094 54.545 0.00 0.00 0.00 3.18
607 651 1.899814 CGCTGCCCTATAATCCTACCA 59.100 52.381 0.00 0.00 0.00 3.25
611 656 4.804261 GCTGCCCTATAATCCTACCAGTTG 60.804 50.000 0.00 0.00 0.00 3.16
615 660 5.248477 GCCCTATAATCCTACCAGTTGATGA 59.752 44.000 0.00 0.00 0.00 2.92
624 669 9.614792 AATCCTACCAGTTGATGACTTTATTAC 57.385 33.333 0.00 0.00 36.10 1.89
625 670 7.262772 TCCTACCAGTTGATGACTTTATTACG 58.737 38.462 0.00 0.00 36.10 3.18
646 692 3.484886 CGTAAAGTCGGACTAGGTTCGAG 60.485 52.174 11.71 0.00 44.61 4.04
650 696 0.747283 TCGGACTAGGTTCGAGCTCC 60.747 60.000 8.47 0.00 38.75 4.70
651 697 1.726533 CGGACTAGGTTCGAGCTCCC 61.727 65.000 8.47 3.51 36.53 4.30
652 698 0.396001 GGACTAGGTTCGAGCTCCCT 60.396 60.000 13.69 13.69 0.00 4.20
655 701 1.272536 ACTAGGTTCGAGCTCCCTTCA 60.273 52.381 14.31 0.00 0.00 3.02
665 711 3.068691 TCCCTTCAGACTCGGCCG 61.069 66.667 22.12 22.12 0.00 6.13
666 712 4.148825 CCCTTCAGACTCGGCCGG 62.149 72.222 27.83 18.67 0.00 6.13
667 713 4.821589 CCTTCAGACTCGGCCGGC 62.822 72.222 27.83 21.18 0.00 6.13
680 726 2.671619 CCGGCGCCTTTTCTCCAA 60.672 61.111 26.68 0.00 0.00 3.53
737 783 1.664965 GTGTGGCGAGGACACTCAC 60.665 63.158 2.96 0.00 42.96 3.51
758 804 1.890876 TGTAACAAGCGCAAGTGGAT 58.109 45.000 11.47 1.03 41.68 3.41
766 812 4.122776 CAAGCGCAAGTGGATAGTATCTT 58.877 43.478 11.47 0.00 41.68 2.40
823 870 1.202382 GCGGCAAGTACCTAGTACTGG 60.202 57.143 5.39 1.52 46.96 4.00
829 876 0.751452 GTACCTAGTACTGGCCAGGC 59.249 60.000 35.42 26.27 36.25 4.85
860 907 2.301346 GGCAGATACCCTTGGAATGTG 58.699 52.381 0.00 0.00 0.00 3.21
876 923 2.760634 TGTGCGAACTACACATCCAT 57.239 45.000 0.00 0.00 42.88 3.41
877 924 2.616960 TGTGCGAACTACACATCCATC 58.383 47.619 0.00 0.00 42.88 3.51
879 926 1.209128 GCGAACTACACATCCATCGG 58.791 55.000 0.00 0.00 0.00 4.18
880 927 1.202371 GCGAACTACACATCCATCGGA 60.202 52.381 0.00 0.00 35.55 4.55
900 947 3.506067 GGAAGACAAATCCAACGTTCCAT 59.494 43.478 0.00 0.00 36.92 3.41
903 950 2.482721 GACAAATCCAACGTTCCATCGT 59.517 45.455 0.00 0.00 46.19 3.73
904 951 3.666274 ACAAATCCAACGTTCCATCGTA 58.334 40.909 0.00 0.00 43.38 3.43
938 985 9.856162 AAACATCTACTTGGAACCTTAGTTTAA 57.144 29.630 0.00 0.00 35.94 1.52
967 1016 1.467734 AGTAGTGACCACGCTCTAACG 59.532 52.381 0.00 0.00 37.97 3.18
1027 1076 1.982395 ATCGAGAAGCCCCACGTCA 60.982 57.895 0.00 0.00 0.00 4.35
1092 1141 3.266772 TCAAGTTGGCCAAGATACTCCAT 59.733 43.478 21.21 0.00 0.00 3.41
1278 1327 5.660864 TGGACTATGTTACTCCATCATGACA 59.339 40.000 0.00 0.00 0.00 3.58
1318 1367 1.583477 GCACTTCTTGGCAAGCTCC 59.417 57.895 22.31 5.10 0.00 4.70
1395 1444 1.566563 GTTCGGCTATGATGCTGCG 59.433 57.895 0.00 0.00 39.06 5.18
1413 1462 3.371097 GAAGGAGATCGGCGTGCCA 62.371 63.158 12.06 0.00 35.37 4.92
1533 1582 2.409975 GTGTCCCGTTTTCAGAATCGA 58.590 47.619 9.06 0.00 31.32 3.59
1693 1767 2.612212 CGATTTCCCCAACTTCATACGG 59.388 50.000 0.00 0.00 0.00 4.02
1738 1812 5.503683 GCTGCTGAACTTCATCATGTACATC 60.504 44.000 5.07 0.00 0.00 3.06
1885 1959 3.942377 TAGCCTCGTGGTACCGGCA 62.942 63.158 24.99 12.02 44.85 5.69
1939 2013 4.075793 AGGGAGCAGGACGGCCTA 62.076 66.667 11.18 0.00 44.80 3.93
2130 2207 1.746470 CTACCGCCGGAATTCCTTTT 58.254 50.000 22.05 4.78 0.00 2.27
2191 2268 1.064166 CAGGAGAAGGTGATTGCCCAT 60.064 52.381 0.00 0.00 0.00 4.00
2507 2592 1.691976 TCAGTCTGGACACGGTGATTT 59.308 47.619 16.29 0.00 0.00 2.17
2543 2628 7.453126 TCTTGGCAAGATTAAATAAACTCCCAA 59.547 33.333 25.38 0.00 31.20 4.12
2619 2704 5.866335 TTAACTAAATGTTGCGTACCAGG 57.134 39.130 0.00 0.00 39.55 4.45
2646 2731 1.471684 GGCAGGTTTGAGATGCAAGAG 59.528 52.381 0.00 0.00 41.78 2.85
2650 2735 4.259356 CAGGTTTGAGATGCAAGAGATCA 58.741 43.478 0.00 0.00 37.87 2.92
2656 2741 5.520376 TGAGATGCAAGAGATCAATCGTA 57.480 39.130 0.00 0.00 0.00 3.43
2657 2742 5.284864 TGAGATGCAAGAGATCAATCGTAC 58.715 41.667 0.00 0.00 0.00 3.67
2658 2743 5.163519 TGAGATGCAAGAGATCAATCGTACA 60.164 40.000 0.00 0.00 0.00 2.90
2684 2769 8.954950 ATCAAATCAGATCAAATAGAGACGTT 57.045 30.769 0.00 0.00 0.00 3.99
2697 2782 9.307121 CAAATAGAGACGTTCTTGATCTTGTAT 57.693 33.333 5.74 0.00 37.36 2.29
2699 2784 9.522804 AATAGAGACGTTCTTGATCTTGTATTC 57.477 33.333 5.74 0.00 37.36 1.75
2727 2817 7.578571 GCATGGTGTAGATCTCCTCCTATAAAG 60.579 44.444 0.00 0.00 0.00 1.85
2728 2818 7.162973 TGGTGTAGATCTCCTCCTATAAAGA 57.837 40.000 0.00 0.00 0.00 2.52
2731 2821 9.095700 GGTGTAGATCTCCTCCTATAAAGAATT 57.904 37.037 0.00 0.00 0.00 2.17
2751 2841 9.709495 AAGAATTACAAATTTAGAAATGCAGCA 57.291 25.926 0.00 0.00 0.00 4.41
2752 2842 9.709495 AGAATTACAAATTTAGAAATGCAGCAA 57.291 25.926 0.00 0.00 0.00 3.91
2753 2843 9.745323 GAATTACAAATTTAGAAATGCAGCAAC 57.255 29.630 0.00 0.00 0.00 4.17
2754 2844 8.830201 ATTACAAATTTAGAAATGCAGCAACA 57.170 26.923 0.00 0.00 0.00 3.33
2755 2845 8.654230 TTACAAATTTAGAAATGCAGCAACAA 57.346 26.923 0.00 0.00 0.00 2.83
2756 2846 7.551035 ACAAATTTAGAAATGCAGCAACAAA 57.449 28.000 0.00 0.00 0.00 2.83
2757 2847 7.983307 ACAAATTTAGAAATGCAGCAACAAAA 58.017 26.923 0.00 0.00 0.00 2.44
2758 2848 8.457261 ACAAATTTAGAAATGCAGCAACAAAAA 58.543 25.926 0.00 0.00 0.00 1.94
2759 2849 9.453325 CAAATTTAGAAATGCAGCAACAAAAAT 57.547 25.926 0.00 0.00 0.00 1.82
2760 2850 9.453325 AAATTTAGAAATGCAGCAACAAAAATG 57.547 25.926 0.00 0.00 0.00 2.32
2761 2851 7.551035 TTTAGAAATGCAGCAACAAAAATGT 57.449 28.000 0.00 0.00 0.00 2.71
2762 2852 8.654230 TTTAGAAATGCAGCAACAAAAATGTA 57.346 26.923 0.00 0.00 0.00 2.29
2763 2853 8.654230 TTAGAAATGCAGCAACAAAAATGTAA 57.346 26.923 0.00 0.00 0.00 2.41
2764 2854 7.733402 AGAAATGCAGCAACAAAAATGTAAT 57.267 28.000 0.00 0.00 0.00 1.89
2765 2855 7.799784 AGAAATGCAGCAACAAAAATGTAATC 58.200 30.769 0.00 0.00 0.00 1.75
2766 2856 7.658575 AGAAATGCAGCAACAAAAATGTAATCT 59.341 29.630 0.00 0.00 0.00 2.40
2767 2857 6.715344 ATGCAGCAACAAAAATGTAATCTG 57.285 33.333 0.00 0.00 0.00 2.90
2768 2858 5.840715 TGCAGCAACAAAAATGTAATCTGA 58.159 33.333 0.00 0.00 0.00 3.27
2769 2859 6.279123 TGCAGCAACAAAAATGTAATCTGAA 58.721 32.000 0.00 0.00 0.00 3.02
2770 2860 6.930164 TGCAGCAACAAAAATGTAATCTGAAT 59.070 30.769 0.00 0.00 0.00 2.57
2771 2861 7.441760 TGCAGCAACAAAAATGTAATCTGAATT 59.558 29.630 0.00 0.00 0.00 2.17
2772 2862 8.284693 GCAGCAACAAAAATGTAATCTGAATTT 58.715 29.630 0.00 0.00 0.00 1.82
2773 2863 9.588774 CAGCAACAAAAATGTAATCTGAATTTG 57.411 29.630 0.00 0.00 0.00 2.32
2774 2864 9.328845 AGCAACAAAAATGTAATCTGAATTTGT 57.671 25.926 0.00 0.00 0.00 2.83
2841 2931 9.847224 GAGATTAGATACTGAAAATTAACCCCA 57.153 33.333 0.00 0.00 0.00 4.96
2846 2936 6.890268 AGATACTGAAAATTAACCCCAACTCC 59.110 38.462 0.00 0.00 0.00 3.85
2847 2937 4.157246 ACTGAAAATTAACCCCAACTCCC 58.843 43.478 0.00 0.00 0.00 4.30
2878 2968 8.433421 AATACAAGTTAAAGGATACATCACCG 57.567 34.615 0.00 0.00 41.41 4.94
2879 2969 5.183228 ACAAGTTAAAGGATACATCACCGG 58.817 41.667 0.00 0.00 41.41 5.28
2880 2970 5.183228 CAAGTTAAAGGATACATCACCGGT 58.817 41.667 0.00 0.00 41.41 5.28
2881 2971 4.766375 AGTTAAAGGATACATCACCGGTG 58.234 43.478 29.26 29.26 41.41 4.94
2882 2972 4.224370 AGTTAAAGGATACATCACCGGTGT 59.776 41.667 32.74 17.56 41.41 4.16
2883 2973 2.691409 AAGGATACATCACCGGTGTG 57.309 50.000 32.74 28.68 41.42 3.82
2884 2974 1.568504 AGGATACATCACCGGTGTGT 58.431 50.000 31.39 31.39 41.01 3.72
2885 2975 2.742348 AGGATACATCACCGGTGTGTA 58.258 47.619 32.77 32.77 41.01 2.90
2886 2976 2.429610 AGGATACATCACCGGTGTGTAC 59.570 50.000 33.08 27.39 41.01 2.90
2887 2977 2.429610 GGATACATCACCGGTGTGTACT 59.570 50.000 33.08 25.72 43.26 2.73
2888 2978 3.118884 GGATACATCACCGGTGTGTACTT 60.119 47.826 33.08 24.92 43.26 2.24
2889 2979 4.098349 GGATACATCACCGGTGTGTACTTA 59.902 45.833 33.08 22.51 43.26 2.24
2890 2980 5.221382 GGATACATCACCGGTGTGTACTTAT 60.221 44.000 33.08 24.87 43.26 1.73
2891 2981 4.546829 ACATCACCGGTGTGTACTTATT 57.453 40.909 32.74 10.59 43.26 1.40
2892 2982 5.664294 ACATCACCGGTGTGTACTTATTA 57.336 39.130 32.74 11.11 43.26 0.98
2893 2983 5.657474 ACATCACCGGTGTGTACTTATTAG 58.343 41.667 32.74 9.72 43.26 1.73
2894 2984 5.186409 ACATCACCGGTGTGTACTTATTAGT 59.814 40.000 32.74 10.32 43.26 2.24
2895 2985 5.726980 TCACCGGTGTGTACTTATTAGTT 57.273 39.130 32.74 0.00 43.26 2.24
2896 2986 6.832520 TCACCGGTGTGTACTTATTAGTTA 57.167 37.500 32.74 5.91 43.26 2.24
2897 2987 6.855836 TCACCGGTGTGTACTTATTAGTTAG 58.144 40.000 32.74 1.79 43.26 2.34
2898 2988 6.038356 CACCGGTGTGTACTTATTAGTTAGG 58.962 44.000 26.95 0.00 37.72 2.69
2899 2989 5.716703 ACCGGTGTGTACTTATTAGTTAGGT 59.283 40.000 6.12 0.00 35.78 3.08
2900 2990 6.038356 CCGGTGTGTACTTATTAGTTAGGTG 58.962 44.000 0.00 0.00 35.78 4.00
2901 2991 6.350445 CCGGTGTGTACTTATTAGTTAGGTGT 60.350 42.308 0.00 0.00 35.78 4.16
2902 2992 6.529125 CGGTGTGTACTTATTAGTTAGGTGTG 59.471 42.308 0.00 0.00 35.78 3.82
2903 2993 6.312180 GGTGTGTACTTATTAGTTAGGTGTGC 59.688 42.308 0.00 0.00 35.78 4.57
2904 2994 6.312180 GTGTGTACTTATTAGTTAGGTGTGCC 59.688 42.308 0.00 0.00 35.78 5.01
2905 2995 6.014413 TGTGTACTTATTAGTTAGGTGTGCCA 60.014 38.462 0.00 0.00 35.78 4.92
2906 2996 6.875195 GTGTACTTATTAGTTAGGTGTGCCAA 59.125 38.462 0.00 0.00 35.78 4.52
2907 2997 7.064253 GTGTACTTATTAGTTAGGTGTGCCAAG 59.936 40.741 0.00 0.00 35.78 3.61
2908 2998 6.123045 ACTTATTAGTTAGGTGTGCCAAGT 57.877 37.500 0.00 0.00 37.19 3.16
2909 2999 6.171213 ACTTATTAGTTAGGTGTGCCAAGTC 58.829 40.000 0.00 0.00 37.19 3.01
2910 3000 4.910458 ATTAGTTAGGTGTGCCAAGTCT 57.090 40.909 0.00 0.00 37.19 3.24
2911 3001 7.179694 ACTTATTAGTTAGGTGTGCCAAGTCTA 59.820 37.037 0.00 0.00 37.19 2.59
2912 3002 6.561519 ATTAGTTAGGTGTGCCAAGTCTAT 57.438 37.500 0.00 0.00 37.19 1.98
2913 3003 7.670605 ATTAGTTAGGTGTGCCAAGTCTATA 57.329 36.000 0.00 0.00 37.19 1.31
2914 3004 5.340439 AGTTAGGTGTGCCAAGTCTATAC 57.660 43.478 0.00 0.00 37.19 1.47
2915 3005 2.961526 AGGTGTGCCAAGTCTATACG 57.038 50.000 0.00 0.00 37.19 3.06
2916 3006 1.480954 AGGTGTGCCAAGTCTATACGG 59.519 52.381 0.00 0.00 37.19 4.02
2917 3007 1.479323 GGTGTGCCAAGTCTATACGGA 59.521 52.381 0.00 0.00 34.09 4.69
2918 3008 2.102588 GGTGTGCCAAGTCTATACGGAT 59.897 50.000 0.00 0.00 34.09 4.18
2919 3009 3.431766 GGTGTGCCAAGTCTATACGGATT 60.432 47.826 0.00 0.00 34.09 3.01
2920 3010 4.202182 GGTGTGCCAAGTCTATACGGATTA 60.202 45.833 0.00 0.00 34.09 1.75
2921 3011 5.510861 GGTGTGCCAAGTCTATACGGATTAT 60.511 44.000 0.00 0.00 34.09 1.28
2922 3012 5.989777 GTGTGCCAAGTCTATACGGATTATT 59.010 40.000 0.00 0.00 0.00 1.40
2923 3013 6.145696 GTGTGCCAAGTCTATACGGATTATTC 59.854 42.308 0.00 0.00 0.00 1.75
2924 3014 6.183360 TGTGCCAAGTCTATACGGATTATTCA 60.183 38.462 0.00 0.00 0.00 2.57
2925 3015 6.145696 GTGCCAAGTCTATACGGATTATTCAC 59.854 42.308 0.00 0.00 0.00 3.18
2926 3016 6.183360 TGCCAAGTCTATACGGATTATTCACA 60.183 38.462 0.00 0.00 0.00 3.58
2927 3017 6.704493 GCCAAGTCTATACGGATTATTCACAA 59.296 38.462 0.00 0.00 0.00 3.33
2928 3018 7.307219 GCCAAGTCTATACGGATTATTCACAAC 60.307 40.741 0.00 0.00 0.00 3.32
2929 3019 7.926555 CCAAGTCTATACGGATTATTCACAACT 59.073 37.037 0.00 0.00 0.00 3.16
2930 3020 8.755941 CAAGTCTATACGGATTATTCACAACTG 58.244 37.037 0.00 0.00 0.00 3.16
2931 3021 8.234136 AGTCTATACGGATTATTCACAACTGA 57.766 34.615 0.00 0.00 0.00 3.41
2932 3022 8.861086 AGTCTATACGGATTATTCACAACTGAT 58.139 33.333 0.00 0.00 0.00 2.90
2933 3023 8.916654 GTCTATACGGATTATTCACAACTGATG 58.083 37.037 0.00 0.00 0.00 3.07
2934 3024 8.856103 TCTATACGGATTATTCACAACTGATGA 58.144 33.333 0.00 0.00 0.00 2.92
2935 3025 7.953158 ATACGGATTATTCACAACTGATGAG 57.047 36.000 0.00 0.00 0.00 2.90
2936 3026 5.977635 ACGGATTATTCACAACTGATGAGA 58.022 37.500 0.00 0.00 0.00 3.27
2937 3027 6.045318 ACGGATTATTCACAACTGATGAGAG 58.955 40.000 0.00 0.00 30.04 3.20
2938 3028 6.127338 ACGGATTATTCACAACTGATGAGAGA 60.127 38.462 0.00 0.00 30.04 3.10
2939 3029 6.199908 CGGATTATTCACAACTGATGAGAGAC 59.800 42.308 0.00 0.00 30.04 3.36
2940 3030 7.044181 GGATTATTCACAACTGATGAGAGACA 58.956 38.462 0.00 0.00 30.04 3.41
2941 3031 7.550551 GGATTATTCACAACTGATGAGAGACAA 59.449 37.037 0.00 0.00 30.04 3.18
2942 3032 7.658179 TTATTCACAACTGATGAGAGACAAC 57.342 36.000 0.00 0.00 30.04 3.32
2943 3033 4.944619 TCACAACTGATGAGAGACAACT 57.055 40.909 0.00 0.00 0.00 3.16
2944 3034 5.282055 TCACAACTGATGAGAGACAACTT 57.718 39.130 0.00 0.00 0.00 2.66
2945 3035 5.052481 TCACAACTGATGAGAGACAACTTG 58.948 41.667 0.00 0.00 0.00 3.16
2946 3036 4.813161 CACAACTGATGAGAGACAACTTGT 59.187 41.667 0.00 0.00 0.00 3.16
2947 3037 5.985530 CACAACTGATGAGAGACAACTTGTA 59.014 40.000 0.00 0.00 0.00 2.41
2948 3038 6.648310 CACAACTGATGAGAGACAACTTGTAT 59.352 38.462 0.00 0.00 0.00 2.29
2949 3039 7.172190 CACAACTGATGAGAGACAACTTGTATT 59.828 37.037 0.00 0.00 0.00 1.89
2950 3040 8.367911 ACAACTGATGAGAGACAACTTGTATTA 58.632 33.333 0.00 0.00 0.00 0.98
2951 3041 9.376075 CAACTGATGAGAGACAACTTGTATTAT 57.624 33.333 0.00 0.00 0.00 1.28
2952 3042 9.593134 AACTGATGAGAGACAACTTGTATTATC 57.407 33.333 0.00 0.00 0.00 1.75
2953 3043 8.753133 ACTGATGAGAGACAACTTGTATTATCA 58.247 33.333 7.47 7.47 0.00 2.15
2954 3044 9.761504 CTGATGAGAGACAACTTGTATTATCAT 57.238 33.333 13.74 13.74 33.78 2.45
2960 3050 9.614792 AGAGACAACTTGTATTATCATAAACCC 57.385 33.333 0.00 0.00 0.00 4.11
2961 3051 8.433421 AGACAACTTGTATTATCATAAACCCG 57.567 34.615 0.00 0.00 0.00 5.28
2962 3052 8.262227 AGACAACTTGTATTATCATAAACCCGA 58.738 33.333 0.00 0.00 0.00 5.14
2963 3053 8.795842 ACAACTTGTATTATCATAAACCCGAA 57.204 30.769 0.00 0.00 0.00 4.30
2964 3054 9.403583 ACAACTTGTATTATCATAAACCCGAAT 57.596 29.630 0.00 0.00 0.00 3.34
2967 3057 9.216117 ACTTGTATTATCATAAACCCGAATAGC 57.784 33.333 0.00 0.00 0.00 2.97
2968 3058 9.436957 CTTGTATTATCATAAACCCGAATAGCT 57.563 33.333 0.00 0.00 0.00 3.32
2970 3060 9.865321 TGTATTATCATAAACCCGAATAGCTAC 57.135 33.333 0.00 0.00 0.00 3.58
2971 3061 9.865321 GTATTATCATAAACCCGAATAGCTACA 57.135 33.333 0.00 0.00 0.00 2.74
2973 3063 9.787435 ATTATCATAAACCCGAATAGCTACAAA 57.213 29.630 0.00 0.00 0.00 2.83
2974 3064 9.616156 TTATCATAAACCCGAATAGCTACAAAA 57.384 29.630 0.00 0.00 0.00 2.44
2975 3065 8.691661 ATCATAAACCCGAATAGCTACAAAAT 57.308 30.769 0.00 0.00 0.00 1.82
2976 3066 8.514330 TCATAAACCCGAATAGCTACAAAATT 57.486 30.769 0.00 0.00 0.00 1.82
2977 3067 8.402472 TCATAAACCCGAATAGCTACAAAATTG 58.598 33.333 0.00 0.00 0.00 2.32
2978 3068 5.576447 AACCCGAATAGCTACAAAATTGG 57.424 39.130 0.00 0.00 0.00 3.16
2979 3069 3.951680 ACCCGAATAGCTACAAAATTGGG 59.048 43.478 0.00 5.90 38.88 4.12
2980 3070 3.243401 CCCGAATAGCTACAAAATTGGGC 60.243 47.826 0.00 2.26 29.82 5.36
2981 3071 3.632145 CCGAATAGCTACAAAATTGGGCT 59.368 43.478 15.97 15.97 41.54 5.19
2982 3072 4.097892 CCGAATAGCTACAAAATTGGGCTT 59.902 41.667 16.59 4.93 40.14 4.35
2983 3073 5.036737 CGAATAGCTACAAAATTGGGCTTG 58.963 41.667 16.59 6.05 40.14 4.01
2984 3074 2.749280 AGCTACAAAATTGGGCTTGC 57.251 45.000 9.11 0.00 37.84 4.01
2985 3075 1.969923 AGCTACAAAATTGGGCTTGCA 59.030 42.857 9.11 0.00 37.84 4.08
2986 3076 2.368221 AGCTACAAAATTGGGCTTGCAA 59.632 40.909 0.00 0.00 37.84 4.08
2987 3077 3.137533 GCTACAAAATTGGGCTTGCAAA 58.862 40.909 0.00 0.00 0.00 3.68
2988 3078 3.563390 GCTACAAAATTGGGCTTGCAAAA 59.437 39.130 0.00 0.00 0.00 2.44
2989 3079 4.319694 GCTACAAAATTGGGCTTGCAAAAG 60.320 41.667 0.00 0.00 0.00 2.27
2990 3080 3.619419 ACAAAATTGGGCTTGCAAAAGT 58.381 36.364 0.00 0.00 0.00 2.66
2991 3081 4.775236 ACAAAATTGGGCTTGCAAAAGTA 58.225 34.783 0.00 0.00 0.00 2.24
2992 3082 5.189180 ACAAAATTGGGCTTGCAAAAGTAA 58.811 33.333 0.00 0.00 0.00 2.24
2993 3083 5.649831 ACAAAATTGGGCTTGCAAAAGTAAA 59.350 32.000 0.00 0.00 0.00 2.01
2994 3084 6.151817 ACAAAATTGGGCTTGCAAAAGTAAAA 59.848 30.769 0.00 0.00 0.00 1.52
2995 3085 6.375945 AAATTGGGCTTGCAAAAGTAAAAG 57.624 33.333 0.00 0.00 0.00 2.27
2996 3086 4.479786 TTGGGCTTGCAAAAGTAAAAGT 57.520 36.364 0.00 0.00 0.00 2.66
2997 3087 5.599999 TTGGGCTTGCAAAAGTAAAAGTA 57.400 34.783 0.00 0.00 0.00 2.24
2998 3088 4.939271 TGGGCTTGCAAAAGTAAAAGTAC 58.061 39.130 0.00 0.00 0.00 2.73
2999 3089 4.402793 TGGGCTTGCAAAAGTAAAAGTACA 59.597 37.500 0.00 0.00 32.12 2.90
3000 3090 5.105310 TGGGCTTGCAAAAGTAAAAGTACAA 60.105 36.000 0.00 0.00 32.12 2.41
3001 3091 5.813157 GGGCTTGCAAAAGTAAAAGTACAAA 59.187 36.000 0.00 0.00 32.12 2.83
3002 3092 6.237996 GGGCTTGCAAAAGTAAAAGTACAAAC 60.238 38.462 0.00 0.00 32.12 2.93
3003 3093 6.311690 GGCTTGCAAAAGTAAAAGTACAAACA 59.688 34.615 0.00 0.00 32.12 2.83
3004 3094 7.011016 GGCTTGCAAAAGTAAAAGTACAAACAT 59.989 33.333 0.00 0.00 32.12 2.71
3005 3095 7.845622 GCTTGCAAAAGTAAAAGTACAAACATG 59.154 33.333 0.00 0.00 32.12 3.21
3006 3096 8.988064 TTGCAAAAGTAAAAGTACAAACATGA 57.012 26.923 0.00 0.00 32.12 3.07
3007 3097 8.627487 TGCAAAAGTAAAAGTACAAACATGAG 57.373 30.769 0.00 0.00 32.12 2.90
3008 3098 8.247562 TGCAAAAGTAAAAGTACAAACATGAGT 58.752 29.630 0.00 0.00 32.12 3.41
3009 3099 9.724839 GCAAAAGTAAAAGTACAAACATGAGTA 57.275 29.630 0.00 0.00 32.12 2.59
3022 3112 8.994429 ACAAACATGAGTATTTTTGTTGTTGA 57.006 26.923 0.00 0.00 41.81 3.18
3023 3113 9.429359 ACAAACATGAGTATTTTTGTTGTTGAA 57.571 25.926 0.00 0.00 41.81 2.69
3024 3114 9.904647 CAAACATGAGTATTTTTGTTGTTGAAG 57.095 29.630 0.00 0.00 32.12 3.02
3025 3115 8.647143 AACATGAGTATTTTTGTTGTTGAAGG 57.353 30.769 0.00 0.00 31.45 3.46
3026 3116 7.781056 ACATGAGTATTTTTGTTGTTGAAGGT 58.219 30.769 0.00 0.00 0.00 3.50
3027 3117 8.908903 ACATGAGTATTTTTGTTGTTGAAGGTA 58.091 29.630 0.00 0.00 0.00 3.08
3028 3118 9.180678 CATGAGTATTTTTGTTGTTGAAGGTAC 57.819 33.333 0.00 0.00 0.00 3.34
3030 3120 8.402472 TGAGTATTTTTGTTGTTGAAGGTACTG 58.598 33.333 0.00 0.00 40.86 2.74
3031 3121 8.288689 AGTATTTTTGTTGTTGAAGGTACTGT 57.711 30.769 0.00 0.00 40.86 3.55
3032 3122 9.398538 AGTATTTTTGTTGTTGAAGGTACTGTA 57.601 29.630 0.00 0.00 40.86 2.74
3035 3125 9.930693 ATTTTTGTTGTTGAAGGTACTGTAAAA 57.069 25.926 0.00 0.00 40.86 1.52
3036 3126 9.760077 TTTTTGTTGTTGAAGGTACTGTAAAAA 57.240 25.926 0.00 0.00 40.86 1.94
3037 3127 9.930693 TTTTGTTGTTGAAGGTACTGTAAAAAT 57.069 25.926 0.00 0.00 40.86 1.82
3079 3169 9.506018 AGCAATATGTTAAATTTTCTTTTGGCT 57.494 25.926 0.00 0.00 0.00 4.75
3094 3184 9.480053 TTTCTTTTGGCTTAAATGATCTTCTTG 57.520 29.630 0.00 0.00 33.88 3.02
3095 3185 8.408043 TCTTTTGGCTTAAATGATCTTCTTGA 57.592 30.769 0.00 0.00 30.20 3.02
3096 3186 8.299570 TCTTTTGGCTTAAATGATCTTCTTGAC 58.700 33.333 0.00 0.00 30.20 3.18
3097 3187 7.523293 TTTGGCTTAAATGATCTTCTTGACA 57.477 32.000 0.00 0.00 0.00 3.58
3098 3188 7.523293 TTGGCTTAAATGATCTTCTTGACAA 57.477 32.000 0.00 0.00 0.00 3.18
3099 3189 7.707624 TGGCTTAAATGATCTTCTTGACAAT 57.292 32.000 0.00 0.00 0.00 2.71
3100 3190 8.125978 TGGCTTAAATGATCTTCTTGACAATT 57.874 30.769 0.00 0.00 0.00 2.32
3101 3191 8.587608 TGGCTTAAATGATCTTCTTGACAATTT 58.412 29.630 0.00 0.00 31.80 1.82
3102 3192 9.428097 GGCTTAAATGATCTTCTTGACAATTTT 57.572 29.630 0.00 0.00 30.46 1.82
3109 3199 9.865321 ATGATCTTCTTGACAATTTTTGGTATG 57.135 29.630 0.00 0.00 34.12 2.39
3110 3200 7.814107 TGATCTTCTTGACAATTTTTGGTATGC 59.186 33.333 0.00 0.00 34.12 3.14
3111 3201 7.288810 TCTTCTTGACAATTTTTGGTATGCT 57.711 32.000 0.00 0.00 34.12 3.79
3112 3202 8.402798 TCTTCTTGACAATTTTTGGTATGCTA 57.597 30.769 0.00 0.00 34.12 3.49
3113 3203 9.023962 TCTTCTTGACAATTTTTGGTATGCTAT 57.976 29.630 0.00 0.00 34.12 2.97
3116 3206 8.405531 TCTTGACAATTTTTGGTATGCTATAGC 58.594 33.333 18.18 18.18 36.87 2.97
3417 3507 3.837213 CAGTGGTGCAGAAGTATTTGG 57.163 47.619 0.00 0.00 0.00 3.28
3418 3508 2.489329 CAGTGGTGCAGAAGTATTTGGG 59.511 50.000 0.00 0.00 0.00 4.12
3419 3509 1.202348 GTGGTGCAGAAGTATTTGGGC 59.798 52.381 0.00 0.00 0.00 5.36
3420 3510 0.817654 GGTGCAGAAGTATTTGGGCC 59.182 55.000 0.00 0.00 0.00 5.80
3421 3511 1.544724 GTGCAGAAGTATTTGGGCCA 58.455 50.000 0.00 0.00 0.00 5.36
3422 3512 2.102578 GTGCAGAAGTATTTGGGCCAT 58.897 47.619 7.26 0.00 0.00 4.40
3423 3513 2.101783 TGCAGAAGTATTTGGGCCATG 58.898 47.619 7.26 0.05 0.00 3.66
3424 3514 1.202452 GCAGAAGTATTTGGGCCATGC 60.202 52.381 7.26 8.05 0.00 4.06
3425 3515 2.101783 CAGAAGTATTTGGGCCATGCA 58.898 47.619 7.26 0.00 0.00 3.96
3426 3516 2.496871 CAGAAGTATTTGGGCCATGCAA 59.503 45.455 7.26 0.00 0.00 4.08
3427 3517 3.055963 CAGAAGTATTTGGGCCATGCAAA 60.056 43.478 7.26 6.59 0.00 3.68
3428 3518 3.582208 AGAAGTATTTGGGCCATGCAAAA 59.418 39.130 7.26 0.00 0.00 2.44
3429 3519 4.041444 AGAAGTATTTGGGCCATGCAAAAA 59.959 37.500 7.26 0.00 0.00 1.94
3430 3520 4.573021 AGTATTTGGGCCATGCAAAAAT 57.427 36.364 7.26 5.49 32.62 1.82
3431 3521 4.263435 AGTATTTGGGCCATGCAAAAATG 58.737 39.130 7.26 0.00 31.21 2.32
3442 3532 5.987777 CATGCAAAAATGGAGTGTGAAAA 57.012 34.783 0.00 0.00 0.00 2.29
3443 3533 6.360844 CATGCAAAAATGGAGTGTGAAAAA 57.639 33.333 0.00 0.00 0.00 1.94
3444 3534 6.423862 CATGCAAAAATGGAGTGTGAAAAAG 58.576 36.000 0.00 0.00 0.00 2.27
3445 3535 5.728471 TGCAAAAATGGAGTGTGAAAAAGA 58.272 33.333 0.00 0.00 0.00 2.52
3446 3536 6.347696 TGCAAAAATGGAGTGTGAAAAAGAT 58.652 32.000 0.00 0.00 0.00 2.40
3447 3537 6.258287 TGCAAAAATGGAGTGTGAAAAAGATG 59.742 34.615 0.00 0.00 0.00 2.90
3448 3538 6.479660 GCAAAAATGGAGTGTGAAAAAGATGA 59.520 34.615 0.00 0.00 0.00 2.92
3449 3539 7.172019 GCAAAAATGGAGTGTGAAAAAGATGAT 59.828 33.333 0.00 0.00 0.00 2.45
3450 3540 9.695526 CAAAAATGGAGTGTGAAAAAGATGATA 57.304 29.630 0.00 0.00 0.00 2.15
3452 3542 9.918630 AAAATGGAGTGTGAAAAAGATGATAAG 57.081 29.630 0.00 0.00 0.00 1.73
3453 3543 8.641498 AATGGAGTGTGAAAAAGATGATAAGT 57.359 30.769 0.00 0.00 0.00 2.24
3454 3544 9.739276 AATGGAGTGTGAAAAAGATGATAAGTA 57.261 29.630 0.00 0.00 0.00 2.24
3455 3545 8.547967 TGGAGTGTGAAAAAGATGATAAGTAC 57.452 34.615 0.00 0.00 0.00 2.73
3456 3546 8.154203 TGGAGTGTGAAAAAGATGATAAGTACA 58.846 33.333 0.00 0.00 0.00 2.90
3457 3547 9.167311 GGAGTGTGAAAAAGATGATAAGTACAT 57.833 33.333 0.00 0.00 0.00 2.29
3489 3579 3.648339 TTGGAGCAGTGATTTTGAAGC 57.352 42.857 0.00 0.00 0.00 3.86
3490 3580 2.585330 TGGAGCAGTGATTTTGAAGCA 58.415 42.857 0.00 0.00 0.00 3.91
3491 3581 2.957680 TGGAGCAGTGATTTTGAAGCAA 59.042 40.909 0.00 0.00 0.00 3.91
3492 3582 3.575256 TGGAGCAGTGATTTTGAAGCAAT 59.425 39.130 0.00 0.00 0.00 3.56
3493 3583 4.039488 TGGAGCAGTGATTTTGAAGCAATT 59.961 37.500 0.00 0.00 0.00 2.32
3494 3584 4.387862 GGAGCAGTGATTTTGAAGCAATTG 59.612 41.667 0.00 0.00 0.00 2.32
3495 3585 4.312443 AGCAGTGATTTTGAAGCAATTGG 58.688 39.130 7.72 0.00 0.00 3.16
3496 3586 4.039488 AGCAGTGATTTTGAAGCAATTGGA 59.961 37.500 7.72 0.00 0.00 3.53
3497 3587 4.387862 GCAGTGATTTTGAAGCAATTGGAG 59.612 41.667 7.72 0.00 0.00 3.86
3498 3588 5.535333 CAGTGATTTTGAAGCAATTGGAGT 58.465 37.500 7.72 0.00 0.00 3.85
3499 3589 5.404366 CAGTGATTTTGAAGCAATTGGAGTG 59.596 40.000 7.72 0.00 0.00 3.51
3500 3590 5.069516 AGTGATTTTGAAGCAATTGGAGTGT 59.930 36.000 7.72 0.00 0.00 3.55
3501 3591 5.754890 GTGATTTTGAAGCAATTGGAGTGTT 59.245 36.000 7.72 0.00 0.00 3.32
3502 3592 6.922957 GTGATTTTGAAGCAATTGGAGTGTTA 59.077 34.615 7.72 0.00 0.00 2.41
3503 3593 7.599998 GTGATTTTGAAGCAATTGGAGTGTTAT 59.400 33.333 7.72 0.00 0.00 1.89
3504 3594 7.814107 TGATTTTGAAGCAATTGGAGTGTTATC 59.186 33.333 7.72 0.00 0.00 1.75
3505 3595 6.899393 TTTGAAGCAATTGGAGTGTTATCT 57.101 33.333 7.72 0.00 0.00 1.98
3506 3596 7.994425 TTTGAAGCAATTGGAGTGTTATCTA 57.006 32.000 7.72 0.00 0.00 1.98
3507 3597 8.579850 TTTGAAGCAATTGGAGTGTTATCTAT 57.420 30.769 7.72 0.00 0.00 1.98
3508 3598 7.792374 TGAAGCAATTGGAGTGTTATCTATC 57.208 36.000 7.72 0.00 0.00 2.08
3509 3599 7.568349 TGAAGCAATTGGAGTGTTATCTATCT 58.432 34.615 7.72 0.00 0.00 1.98
3510 3600 8.704668 TGAAGCAATTGGAGTGTTATCTATCTA 58.295 33.333 7.72 0.00 0.00 1.98
3511 3601 9.547753 GAAGCAATTGGAGTGTTATCTATCTAA 57.452 33.333 7.72 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.994247 AATGACAGGGACCATCTGCA 59.006 50.000 0.00 0.00 35.78 4.41
1 2 1.386533 CAATGACAGGGACCATCTGC 58.613 55.000 0.00 0.00 35.78 4.26
7 8 0.400213 TCACACCAATGACAGGGACC 59.600 55.000 3.10 0.00 0.00 4.46
13 14 1.066215 CGATCCCTCACACCAATGACA 60.066 52.381 0.00 0.00 0.00 3.58
15 16 0.541392 CCGATCCCTCACACCAATGA 59.459 55.000 0.00 0.00 0.00 2.57
24 25 0.041238 AGAAGGACACCGATCCCTCA 59.959 55.000 0.00 0.00 39.91 3.86
33 35 3.498676 CGTCACTGAGAAGGACACC 57.501 57.895 0.00 0.00 0.00 4.16
49 51 1.989706 AACCAAAGGCATAACACCGT 58.010 45.000 0.00 0.00 0.00 4.83
55 57 0.523966 CGCGGAAACCAAAGGCATAA 59.476 50.000 0.00 0.00 0.00 1.90
64 66 2.169769 AGGATAGAAATCGCGGAAACCA 59.830 45.455 6.13 0.00 32.44 3.67
67 69 3.869246 GTCAAGGATAGAAATCGCGGAAA 59.131 43.478 6.13 0.00 32.44 3.13
71 73 1.787155 CGGTCAAGGATAGAAATCGCG 59.213 52.381 0.00 0.00 32.44 5.87
74 76 7.657761 ACAATACATCGGTCAAGGATAGAAATC 59.342 37.037 0.00 0.00 0.00 2.17
75 77 7.442364 CACAATACATCGGTCAAGGATAGAAAT 59.558 37.037 0.00 0.00 0.00 2.17
76 78 6.761242 CACAATACATCGGTCAAGGATAGAAA 59.239 38.462 0.00 0.00 0.00 2.52
78 80 5.739070 GCACAATACATCGGTCAAGGATAGA 60.739 44.000 0.00 0.00 0.00 1.98
80 82 4.100963 AGCACAATACATCGGTCAAGGATA 59.899 41.667 0.00 0.00 0.00 2.59
81 83 3.118261 AGCACAATACATCGGTCAAGGAT 60.118 43.478 0.00 0.00 0.00 3.24
90 93 6.129393 CCGAAAATAGAAGCACAATACATCG 58.871 40.000 0.00 0.00 0.00 3.84
98 101 2.489938 AGGCCGAAAATAGAAGCACA 57.510 45.000 0.00 0.00 0.00 4.57
102 105 4.331168 CACAGAGAAGGCCGAAAATAGAAG 59.669 45.833 0.00 0.00 0.00 2.85
104 107 3.513912 TCACAGAGAAGGCCGAAAATAGA 59.486 43.478 0.00 0.00 0.00 1.98
106 109 3.973206 TCACAGAGAAGGCCGAAAATA 57.027 42.857 0.00 0.00 0.00 1.40
133 136 1.940613 AGTGAGTTGTTGAACGAAGGC 59.059 47.619 0.00 0.00 37.15 4.35
149 152 3.675775 GCAAGGCAAAACAACAGAAGTGA 60.676 43.478 0.00 0.00 0.00 3.41
152 155 2.204237 GGCAAGGCAAAACAACAGAAG 58.796 47.619 0.00 0.00 0.00 2.85
153 156 1.470632 CGGCAAGGCAAAACAACAGAA 60.471 47.619 0.00 0.00 0.00 3.02
154 157 0.102120 CGGCAAGGCAAAACAACAGA 59.898 50.000 0.00 0.00 0.00 3.41
156 159 1.520342 GCGGCAAGGCAAAACAACA 60.520 52.632 0.00 0.00 0.00 3.33
158 161 1.227205 CAGCGGCAAGGCAAAACAA 60.227 52.632 1.45 0.00 34.64 2.83
163 166 4.953010 TGAGCAGCGGCAAGGCAA 62.953 61.111 12.44 0.00 44.61 4.52
165 168 4.189188 CATGAGCAGCGGCAAGGC 62.189 66.667 12.44 2.70 44.61 4.35
177 180 1.073964 CACTCAAGCACCGTCATGAG 58.926 55.000 0.00 0.00 43.79 2.90
178 181 0.320683 CCACTCAAGCACCGTCATGA 60.321 55.000 0.00 0.00 0.00 3.07
179 182 0.603707 ACCACTCAAGCACCGTCATG 60.604 55.000 0.00 0.00 0.00 3.07
180 183 0.320771 GACCACTCAAGCACCGTCAT 60.321 55.000 0.00 0.00 0.00 3.06
181 184 1.069090 GACCACTCAAGCACCGTCA 59.931 57.895 0.00 0.00 0.00 4.35
184 187 2.738521 CCGACCACTCAAGCACCG 60.739 66.667 0.00 0.00 0.00 4.94
212 215 2.125912 CAAGAGCGGACCCAGACG 60.126 66.667 0.00 0.00 0.00 4.18
215 218 1.071471 ACAACAAGAGCGGACCCAG 59.929 57.895 0.00 0.00 0.00 4.45
222 225 1.528586 CAAGGAGACACAACAAGAGCG 59.471 52.381 0.00 0.00 0.00 5.03
227 230 2.486548 GCTACCCAAGGAGACACAACAA 60.487 50.000 0.00 0.00 0.00 2.83
234 237 1.066071 GTCCAAGCTACCCAAGGAGAC 60.066 57.143 0.00 0.00 0.00 3.36
238 241 0.322546 GGTGTCCAAGCTACCCAAGG 60.323 60.000 0.00 0.00 0.00 3.61
245 248 3.420893 CCAAATCAAGGTGTCCAAGCTA 58.579 45.455 0.00 0.00 34.84 3.32
276 279 2.943653 CGGACGGCAAAGTGGTTC 59.056 61.111 0.00 0.00 0.00 3.62
295 298 1.153489 CTCGATGGGTGCCACTCTG 60.153 63.158 0.00 0.00 35.80 3.35
296 299 3.023949 GCTCGATGGGTGCCACTCT 62.024 63.158 0.00 0.00 35.80 3.24
319 322 4.766891 CACAAAGGGACACTACCATTTCAT 59.233 41.667 0.00 0.00 41.05 2.57
325 328 0.109723 GCCACAAAGGGACACTACCA 59.890 55.000 0.00 0.00 38.09 3.25
333 336 3.172106 TCCACCGCCACAAAGGGA 61.172 61.111 0.00 0.00 38.09 4.20
339 342 0.605319 GATTTGTCTCCACCGCCACA 60.605 55.000 0.00 0.00 0.00 4.17
340 343 0.321653 AGATTTGTCTCCACCGCCAC 60.322 55.000 0.00 0.00 0.00 5.01
367 370 0.389426 ACCGTGCGAGTATTGTGTCC 60.389 55.000 0.00 0.00 0.00 4.02
368 371 0.713883 CACCGTGCGAGTATTGTGTC 59.286 55.000 0.00 0.00 0.00 3.67
393 425 0.035458 AACGAAGGCCACAGGAGAAG 59.965 55.000 5.01 0.00 0.00 2.85
394 426 0.472471 AAACGAAGGCCACAGGAGAA 59.528 50.000 5.01 0.00 0.00 2.87
395 427 0.472471 AAAACGAAGGCCACAGGAGA 59.528 50.000 5.01 0.00 0.00 3.71
396 428 1.318576 AAAAACGAAGGCCACAGGAG 58.681 50.000 5.01 0.00 0.00 3.69
397 429 2.642154 TAAAAACGAAGGCCACAGGA 57.358 45.000 5.01 0.00 0.00 3.86
398 430 3.181500 GCTATAAAAACGAAGGCCACAGG 60.181 47.826 5.01 0.00 0.00 4.00
399 431 3.689649 AGCTATAAAAACGAAGGCCACAG 59.310 43.478 5.01 0.00 0.00 3.66
400 432 3.681593 AGCTATAAAAACGAAGGCCACA 58.318 40.909 5.01 0.00 0.00 4.17
401 433 3.687698 TGAGCTATAAAAACGAAGGCCAC 59.312 43.478 5.01 0.00 0.00 5.01
402 434 3.945346 TGAGCTATAAAAACGAAGGCCA 58.055 40.909 5.01 0.00 0.00 5.36
403 435 4.574828 TGATGAGCTATAAAAACGAAGGCC 59.425 41.667 0.00 0.00 0.00 5.19
404 436 5.734855 TGATGAGCTATAAAAACGAAGGC 57.265 39.130 0.00 0.00 0.00 4.35
405 437 7.852945 GTGAATGATGAGCTATAAAAACGAAGG 59.147 37.037 0.00 0.00 0.00 3.46
406 438 7.580523 CGTGAATGATGAGCTATAAAAACGAAG 59.419 37.037 0.00 0.00 0.00 3.79
407 439 7.398746 CGTGAATGATGAGCTATAAAAACGAA 58.601 34.615 0.00 0.00 0.00 3.85
408 440 6.509517 GCGTGAATGATGAGCTATAAAAACGA 60.510 38.462 0.00 0.00 0.00 3.85
409 441 5.617187 GCGTGAATGATGAGCTATAAAAACG 59.383 40.000 0.00 0.00 0.00 3.60
410 442 5.909610 GGCGTGAATGATGAGCTATAAAAAC 59.090 40.000 0.00 0.00 0.00 2.43
411 443 5.277297 CGGCGTGAATGATGAGCTATAAAAA 60.277 40.000 0.00 0.00 0.00 1.94
412 444 4.211164 CGGCGTGAATGATGAGCTATAAAA 59.789 41.667 0.00 0.00 0.00 1.52
413 445 3.740832 CGGCGTGAATGATGAGCTATAAA 59.259 43.478 0.00 0.00 0.00 1.40
414 446 3.005367 TCGGCGTGAATGATGAGCTATAA 59.995 43.478 6.85 0.00 0.00 0.98
415 447 2.556622 TCGGCGTGAATGATGAGCTATA 59.443 45.455 6.85 0.00 0.00 1.31
416 448 1.341209 TCGGCGTGAATGATGAGCTAT 59.659 47.619 6.85 0.00 0.00 2.97
417 449 0.744281 TCGGCGTGAATGATGAGCTA 59.256 50.000 6.85 0.00 0.00 3.32
418 450 0.108186 TTCGGCGTGAATGATGAGCT 60.108 50.000 6.85 0.00 0.00 4.09
419 451 0.026803 GTTCGGCGTGAATGATGAGC 59.973 55.000 6.85 0.00 39.21 4.26
420 452 1.325640 CTGTTCGGCGTGAATGATGAG 59.674 52.381 6.85 0.00 39.21 2.90
421 453 1.337728 ACTGTTCGGCGTGAATGATGA 60.338 47.619 6.85 0.00 39.21 2.92
422 454 1.061131 GACTGTTCGGCGTGAATGATG 59.939 52.381 6.85 0.00 39.21 3.07
423 455 1.066858 AGACTGTTCGGCGTGAATGAT 60.067 47.619 6.85 0.00 39.21 2.45
424 456 0.317160 AGACTGTTCGGCGTGAATGA 59.683 50.000 6.85 0.00 39.21 2.57
425 457 0.716108 GAGACTGTTCGGCGTGAATG 59.284 55.000 6.85 0.00 39.21 2.67
426 458 0.389948 GGAGACTGTTCGGCGTGAAT 60.390 55.000 6.85 0.00 39.21 2.57
427 459 1.006571 GGAGACTGTTCGGCGTGAA 60.007 57.895 6.85 0.00 0.00 3.18
428 460 1.863662 GAGGAGACTGTTCGGCGTGA 61.864 60.000 6.85 0.00 44.43 4.35
429 461 1.444553 GAGGAGACTGTTCGGCGTG 60.445 63.158 6.85 0.00 44.43 5.34
430 462 1.901948 TGAGGAGACTGTTCGGCGT 60.902 57.895 6.85 0.00 44.43 5.68
431 463 1.444553 GTGAGGAGACTGTTCGGCG 60.445 63.158 0.00 0.00 44.43 6.46
432 464 1.444553 CGTGAGGAGACTGTTCGGC 60.445 63.158 0.00 0.00 44.43 5.54
433 465 0.387367 CACGTGAGGAGACTGTTCGG 60.387 60.000 10.90 0.00 44.43 4.30
434 466 0.387367 CCACGTGAGGAGACTGTTCG 60.387 60.000 19.30 0.00 44.43 3.95
435 467 0.667792 GCCACGTGAGGAGACTGTTC 60.668 60.000 19.30 0.00 44.43 3.18
436 468 1.367840 GCCACGTGAGGAGACTGTT 59.632 57.895 19.30 0.00 44.43 3.16
437 469 2.574955 GGCCACGTGAGGAGACTGT 61.575 63.158 19.30 0.00 44.43 3.55
438 470 1.821061 AAGGCCACGTGAGGAGACTG 61.821 60.000 19.30 0.00 44.43 3.51
440 472 0.173708 CTAAGGCCACGTGAGGAGAC 59.826 60.000 19.30 1.37 0.00 3.36
441 473 0.251653 ACTAAGGCCACGTGAGGAGA 60.252 55.000 19.30 0.00 0.00 3.71
442 474 1.405821 CTACTAAGGCCACGTGAGGAG 59.594 57.143 19.30 8.16 0.00 3.69
459 491 6.328714 GCTAGACCTACAACAACTAACCTAC 58.671 44.000 0.00 0.00 0.00 3.18
471 503 1.660560 GACCGCCGCTAGACCTACAA 61.661 60.000 0.00 0.00 0.00 2.41
488 520 0.527565 AAACCGCATCATTGCCAGAC 59.472 50.000 0.00 0.00 46.57 3.51
497 531 0.313672 GCCAAGAACAAACCGCATCA 59.686 50.000 0.00 0.00 0.00 3.07
498 532 0.388520 GGCCAAGAACAAACCGCATC 60.389 55.000 0.00 0.00 0.00 3.91
500 534 1.040339 AAGGCCAAGAACAAACCGCA 61.040 50.000 5.01 0.00 0.00 5.69
502 536 0.597377 GCAAGGCCAAGAACAAACCG 60.597 55.000 5.01 0.00 0.00 4.44
503 537 3.289128 GCAAGGCCAAGAACAAACC 57.711 52.632 5.01 0.00 0.00 3.27
517 551 3.744660 AGTAGAACAACTCCAAGGCAAG 58.255 45.455 0.00 0.00 0.00 4.01
560 604 9.170890 ACATACATAGAGAATAGGGGAAAATGA 57.829 33.333 0.00 0.00 0.00 2.57
561 605 9.442047 GACATACATAGAGAATAGGGGAAAATG 57.558 37.037 0.00 0.00 0.00 2.32
562 606 8.314751 CGACATACATAGAGAATAGGGGAAAAT 58.685 37.037 0.00 0.00 0.00 1.82
563 607 7.667557 CGACATACATAGAGAATAGGGGAAAA 58.332 38.462 0.00 0.00 0.00 2.29
567 611 4.707448 AGCGACATACATAGAGAATAGGGG 59.293 45.833 0.00 0.00 0.00 4.79
577 621 3.876274 ATAGGGCAGCGACATACATAG 57.124 47.619 0.00 0.00 0.00 2.23
579 623 4.383118 GGATTATAGGGCAGCGACATACAT 60.383 45.833 0.00 0.00 0.00 2.29
581 625 3.195825 AGGATTATAGGGCAGCGACATAC 59.804 47.826 0.00 0.00 0.00 2.39
587 631 1.899814 TGGTAGGATTATAGGGCAGCG 59.100 52.381 0.00 0.00 0.00 5.18
604 648 8.836268 TTTACGTAATAAAGTCATCAACTGGT 57.164 30.769 9.18 0.00 38.58 4.00
624 669 2.416547 TCGAACCTAGTCCGACTTTACG 59.583 50.000 6.31 6.65 0.00 3.18
625 670 3.730362 GCTCGAACCTAGTCCGACTTTAC 60.730 52.174 6.31 0.00 0.00 2.01
632 678 1.726533 GGGAGCTCGAACCTAGTCCG 61.727 65.000 7.83 0.00 0.00 4.79
646 692 2.185608 GCCGAGTCTGAAGGGAGC 59.814 66.667 0.00 0.00 0.00 4.70
650 696 4.821589 GCCGGCCGAGTCTGAAGG 62.822 72.222 30.73 7.40 0.00 3.46
665 711 3.978460 TTTTTGGAGAAAAGGCGCC 57.022 47.368 21.89 21.89 32.62 6.53
685 731 3.106242 TCTGTGCATACGTGTCTTGTT 57.894 42.857 0.00 0.00 0.00 2.83
694 740 0.840103 CGTGACGATCTGTGCATACG 59.160 55.000 0.00 0.00 0.00 3.06
696 742 1.202256 GGTCGTGACGATCTGTGCATA 60.202 52.381 12.08 0.00 38.42 3.14
699 745 1.073216 CTGGTCGTGACGATCTGTGC 61.073 60.000 19.71 0.90 37.91 4.57
737 783 1.535028 TCCACTTGCGCTTGTTACATG 59.465 47.619 9.73 0.00 0.00 3.21
766 812 5.946972 TGGTCCTTCTGGCGATTTTTATTAA 59.053 36.000 0.00 0.00 0.00 1.40
779 826 1.619654 TGTGCATTTGGTCCTTCTGG 58.380 50.000 0.00 0.00 0.00 3.86
780 827 2.159476 CGATGTGCATTTGGTCCTTCTG 60.159 50.000 0.00 0.00 0.00 3.02
833 880 0.107456 AAGGGTATCTGCCGCTGATG 59.893 55.000 19.83 0.00 0.00 3.07
860 907 1.202371 TCCGATGGATGTGTAGTTCGC 60.202 52.381 0.00 0.00 0.00 4.70
872 919 3.343617 GTTGGATTTGTCTTCCGATGGA 58.656 45.455 0.00 0.00 35.94 3.41
875 922 3.053831 ACGTTGGATTTGTCTTCCGAT 57.946 42.857 0.00 0.00 35.94 4.18
876 923 2.536761 ACGTTGGATTTGTCTTCCGA 57.463 45.000 0.00 0.00 35.94 4.55
877 924 2.095919 GGAACGTTGGATTTGTCTTCCG 60.096 50.000 5.00 0.00 35.94 4.30
879 926 4.669197 CGATGGAACGTTGGATTTGTCTTC 60.669 45.833 5.00 0.00 0.00 2.87
880 927 3.188460 CGATGGAACGTTGGATTTGTCTT 59.812 43.478 5.00 0.00 0.00 3.01
900 947 7.123098 TCCAAGTAGATGTTTCCAAGTATACGA 59.877 37.037 0.00 0.00 0.00 3.43
903 950 8.044908 GGTTCCAAGTAGATGTTTCCAAGTATA 58.955 37.037 0.00 0.00 0.00 1.47
904 951 6.884836 GGTTCCAAGTAGATGTTTCCAAGTAT 59.115 38.462 0.00 0.00 0.00 2.12
938 985 2.193993 GTGGTCACTACTTATGGGGGT 58.806 52.381 0.00 0.00 0.00 4.95
993 1042 5.762179 TCTCGATGGCCTCCATAATAATT 57.238 39.130 3.32 0.00 45.26 1.40
1092 1141 1.754234 GACGTAGAAGCCCCGGGTA 60.754 63.158 21.85 0.74 0.00 3.69
1278 1327 2.860971 AAGTGGGGCAGGAAGGCT 60.861 61.111 0.00 0.00 43.56 4.58
1368 1417 1.474879 TCATAGCCGAACGACATGACA 59.525 47.619 0.00 0.00 0.00 3.58
1395 1444 2.586357 GGCACGCCGATCTCCTTC 60.586 66.667 0.00 0.00 0.00 3.46
1526 1575 8.360390 ACACACACACATATATATGTCGATTCT 58.640 33.333 22.81 4.52 44.57 2.40
1675 1749 2.613474 CGTCCGTATGAAGTTGGGGAAA 60.613 50.000 0.00 0.00 0.00 3.13
1784 1858 3.854669 CGGCCCCTCGAGCTCATT 61.855 66.667 15.40 0.00 0.00 2.57
1885 1959 2.915659 TCGTCAACCGAGGTGCCT 60.916 61.111 0.00 0.00 41.60 4.75
1939 2013 3.374402 CCGTCGAGCCACTCCAGT 61.374 66.667 0.00 0.00 0.00 4.00
2191 2268 3.501040 GAAAACCCCCACCGCCTCA 62.501 63.158 0.00 0.00 0.00 3.86
2465 2550 4.033776 CACGGGTCCACCTGGCAT 62.034 66.667 9.46 0.00 46.75 4.40
2507 2592 1.275010 TCTTGCCAAGAGTACATCGCA 59.725 47.619 2.24 0.00 32.71 5.10
2543 2628 5.355910 GGCATTGCTTTCATTTCCATCATTT 59.644 36.000 8.82 0.00 0.00 2.32
2619 2704 0.391661 TCTCAAACCTGCCTGCGATC 60.392 55.000 0.00 0.00 0.00 3.69
2646 2731 8.768019 TGATCTGATTTGATTGTACGATTGATC 58.232 33.333 0.00 2.92 0.00 2.92
2656 2741 8.824781 CGTCTCTATTTGATCTGATTTGATTGT 58.175 33.333 0.00 0.00 0.00 2.71
2657 2742 8.824781 ACGTCTCTATTTGATCTGATTTGATTG 58.175 33.333 0.00 0.00 0.00 2.67
2658 2743 8.954950 ACGTCTCTATTTGATCTGATTTGATT 57.045 30.769 0.00 0.00 0.00 2.57
2684 2769 4.129380 CCATGCGGAATACAAGATCAAGA 58.871 43.478 0.00 0.00 0.00 3.02
2697 2782 1.412710 GGAGATCTACACCATGCGGAA 59.587 52.381 0.00 0.00 35.59 4.30
2699 2784 1.000283 GAGGAGATCTACACCATGCGG 60.000 57.143 7.93 0.00 38.77 5.69
2727 2817 9.745323 GTTGCTGCATTTCTAAATTTGTAATTC 57.255 29.630 1.84 0.00 0.00 2.17
2728 2818 9.270640 TGTTGCTGCATTTCTAAATTTGTAATT 57.729 25.926 1.84 0.00 0.00 1.40
2731 2821 8.654230 TTTGTTGCTGCATTTCTAAATTTGTA 57.346 26.923 1.84 0.00 0.00 2.41
2739 2829 8.830201 ATTACATTTTTGTTGCTGCATTTCTA 57.170 26.923 1.84 0.00 0.00 2.10
2740 2830 7.658575 AGATTACATTTTTGTTGCTGCATTTCT 59.341 29.630 1.84 0.00 0.00 2.52
2741 2831 7.742963 CAGATTACATTTTTGTTGCTGCATTTC 59.257 33.333 1.84 0.00 0.00 2.17
2742 2832 7.441760 TCAGATTACATTTTTGTTGCTGCATTT 59.558 29.630 1.84 0.00 0.00 2.32
2743 2833 6.930164 TCAGATTACATTTTTGTTGCTGCATT 59.070 30.769 1.84 0.00 0.00 3.56
2744 2834 6.457355 TCAGATTACATTTTTGTTGCTGCAT 58.543 32.000 1.84 0.00 0.00 3.96
2745 2835 5.840715 TCAGATTACATTTTTGTTGCTGCA 58.159 33.333 0.00 0.00 0.00 4.41
2746 2836 6.768029 TTCAGATTACATTTTTGTTGCTGC 57.232 33.333 0.00 0.00 0.00 5.25
2747 2837 9.588774 CAAATTCAGATTACATTTTTGTTGCTG 57.411 29.630 0.00 0.00 0.00 4.41
2748 2838 9.328845 ACAAATTCAGATTACATTTTTGTTGCT 57.671 25.926 0.00 0.00 33.40 3.91
2814 2904 9.847224 GGGGTTAATTTTCAGTATCTAATCTCA 57.153 33.333 0.00 0.00 0.00 3.27
2815 2905 9.847224 TGGGGTTAATTTTCAGTATCTAATCTC 57.153 33.333 0.00 0.00 0.00 2.75
2818 2908 9.990868 AGTTGGGGTTAATTTTCAGTATCTAAT 57.009 29.630 0.00 0.00 0.00 1.73
2819 2909 9.457436 GAGTTGGGGTTAATTTTCAGTATCTAA 57.543 33.333 0.00 0.00 0.00 2.10
2820 2910 8.050930 GGAGTTGGGGTTAATTTTCAGTATCTA 58.949 37.037 0.00 0.00 0.00 1.98
2821 2911 6.890268 GGAGTTGGGGTTAATTTTCAGTATCT 59.110 38.462 0.00 0.00 0.00 1.98
2822 2912 6.096423 GGGAGTTGGGGTTAATTTTCAGTATC 59.904 42.308 0.00 0.00 0.00 2.24
2823 2913 5.955959 GGGAGTTGGGGTTAATTTTCAGTAT 59.044 40.000 0.00 0.00 0.00 2.12
2824 2914 5.075344 AGGGAGTTGGGGTTAATTTTCAGTA 59.925 40.000 0.00 0.00 0.00 2.74
2825 2915 4.140782 AGGGAGTTGGGGTTAATTTTCAGT 60.141 41.667 0.00 0.00 0.00 3.41
2826 2916 4.416516 AGGGAGTTGGGGTTAATTTTCAG 58.583 43.478 0.00 0.00 0.00 3.02
2827 2917 4.479156 AGGGAGTTGGGGTTAATTTTCA 57.521 40.909 0.00 0.00 0.00 2.69
2828 2918 6.921486 TTTAGGGAGTTGGGGTTAATTTTC 57.079 37.500 0.00 0.00 0.00 2.29
2829 2919 7.693533 TTTTTAGGGAGTTGGGGTTAATTTT 57.306 32.000 0.00 0.00 0.00 1.82
2855 2945 6.070653 ACCGGTGATGTATCCTTTAACTTGTA 60.071 38.462 6.12 0.00 0.00 2.41
2856 2946 5.183228 CCGGTGATGTATCCTTTAACTTGT 58.817 41.667 0.00 0.00 0.00 3.16
2857 2947 5.064707 CACCGGTGATGTATCCTTTAACTTG 59.935 44.000 31.31 0.00 0.00 3.16
2858 2948 5.183228 CACCGGTGATGTATCCTTTAACTT 58.817 41.667 31.31 0.00 0.00 2.66
2859 2949 4.224370 ACACCGGTGATGTATCCTTTAACT 59.776 41.667 40.21 9.60 0.00 2.24
2860 2950 4.510571 ACACCGGTGATGTATCCTTTAAC 58.489 43.478 40.21 0.00 0.00 2.01
2861 2951 4.829872 ACACCGGTGATGTATCCTTTAA 57.170 40.909 40.21 0.00 0.00 1.52
2869 2959 7.093814 AACTAATAAGTACACACCGGTGATGTA 60.094 37.037 40.21 33.83 40.48 2.29
2870 2960 6.295462 AACTAATAAGTACACACCGGTGATGT 60.295 38.462 40.21 34.77 40.48 3.06
2871 2961 6.103997 AACTAATAAGTACACACCGGTGATG 58.896 40.000 40.21 31.69 40.48 3.07
2872 2962 6.290294 AACTAATAAGTACACACCGGTGAT 57.710 37.500 40.21 27.87 40.48 3.06
2873 2963 5.726980 AACTAATAAGTACACACCGGTGA 57.273 39.130 40.21 16.59 40.48 4.02
2874 2964 6.038356 CCTAACTAATAAGTACACACCGGTG 58.962 44.000 32.83 32.83 42.43 4.94
2875 2965 5.716703 ACCTAACTAATAAGTACACACCGGT 59.283 40.000 0.00 0.00 33.75 5.28
2876 2966 6.038356 CACCTAACTAATAAGTACACACCGG 58.962 44.000 0.00 0.00 33.75 5.28
2877 2967 6.529125 CACACCTAACTAATAAGTACACACCG 59.471 42.308 0.00 0.00 33.75 4.94
2878 2968 6.312180 GCACACCTAACTAATAAGTACACACC 59.688 42.308 0.00 0.00 33.75 4.16
2879 2969 6.312180 GGCACACCTAACTAATAAGTACACAC 59.688 42.308 0.00 0.00 33.75 3.82
2880 2970 6.014413 TGGCACACCTAACTAATAAGTACACA 60.014 38.462 0.00 0.00 33.36 3.72
2881 2971 6.400568 TGGCACACCTAACTAATAAGTACAC 58.599 40.000 0.00 0.00 33.36 2.90
2882 2972 6.608539 TGGCACACCTAACTAATAAGTACA 57.391 37.500 0.00 0.00 33.36 2.90
2883 2973 7.101700 ACTTGGCACACCTAACTAATAAGTAC 58.898 38.462 0.00 0.00 39.29 2.73
2884 2974 7.179694 AGACTTGGCACACCTAACTAATAAGTA 59.820 37.037 0.00 0.00 39.29 2.24
2885 2975 6.013639 AGACTTGGCACACCTAACTAATAAGT 60.014 38.462 0.00 0.00 39.29 2.24
2886 2976 6.407202 AGACTTGGCACACCTAACTAATAAG 58.593 40.000 0.00 0.00 39.29 1.73
2887 2977 6.368779 AGACTTGGCACACCTAACTAATAA 57.631 37.500 0.00 0.00 39.29 1.40
2888 2978 7.670605 ATAGACTTGGCACACCTAACTAATA 57.329 36.000 0.00 0.00 39.29 0.98
2889 2979 4.910458 AGACTTGGCACACCTAACTAAT 57.090 40.909 0.00 0.00 39.29 1.73
2890 2980 6.405065 CGTATAGACTTGGCACACCTAACTAA 60.405 42.308 0.00 0.00 39.29 2.24
2891 2981 5.066893 CGTATAGACTTGGCACACCTAACTA 59.933 44.000 0.00 0.00 39.29 2.24
2892 2982 4.142227 CGTATAGACTTGGCACACCTAACT 60.142 45.833 0.00 0.00 39.29 2.24
2893 2983 4.110482 CGTATAGACTTGGCACACCTAAC 58.890 47.826 0.00 0.00 39.29 2.34
2894 2984 3.131577 CCGTATAGACTTGGCACACCTAA 59.868 47.826 0.00 0.00 39.29 2.69
2895 2985 2.691526 CCGTATAGACTTGGCACACCTA 59.308 50.000 0.00 0.00 39.29 3.08
2896 2986 1.480954 CCGTATAGACTTGGCACACCT 59.519 52.381 0.00 0.00 39.29 4.00
2897 2987 1.479323 TCCGTATAGACTTGGCACACC 59.521 52.381 0.00 0.00 39.29 4.16
2898 2988 2.953466 TCCGTATAGACTTGGCACAC 57.047 50.000 0.00 0.00 39.29 3.82
2899 2989 5.801531 ATAATCCGTATAGACTTGGCACA 57.198 39.130 0.00 0.00 0.00 4.57
2900 2990 6.145696 GTGAATAATCCGTATAGACTTGGCAC 59.854 42.308 0.00 0.00 0.00 5.01
2901 2991 6.183360 TGTGAATAATCCGTATAGACTTGGCA 60.183 38.462 0.00 0.00 0.00 4.92
2902 2992 6.220930 TGTGAATAATCCGTATAGACTTGGC 58.779 40.000 0.00 0.00 0.00 4.52
2903 2993 7.926555 AGTTGTGAATAATCCGTATAGACTTGG 59.073 37.037 0.00 0.00 0.00 3.61
2904 2994 8.755941 CAGTTGTGAATAATCCGTATAGACTTG 58.244 37.037 0.00 0.00 0.00 3.16
2905 2995 8.692710 TCAGTTGTGAATAATCCGTATAGACTT 58.307 33.333 0.00 0.00 0.00 3.01
2906 2996 8.234136 TCAGTTGTGAATAATCCGTATAGACT 57.766 34.615 0.00 0.00 0.00 3.24
2907 2997 8.916654 CATCAGTTGTGAATAATCCGTATAGAC 58.083 37.037 0.00 0.00 35.88 2.59
2908 2998 8.856103 TCATCAGTTGTGAATAATCCGTATAGA 58.144 33.333 0.00 0.00 35.88 1.98
2909 2999 9.133627 CTCATCAGTTGTGAATAATCCGTATAG 57.866 37.037 0.00 0.00 35.88 1.31
2910 3000 8.856103 TCTCATCAGTTGTGAATAATCCGTATA 58.144 33.333 0.00 0.00 35.88 1.47
2911 3001 7.726216 TCTCATCAGTTGTGAATAATCCGTAT 58.274 34.615 0.00 0.00 35.88 3.06
2912 3002 7.068226 TCTCTCATCAGTTGTGAATAATCCGTA 59.932 37.037 0.00 0.00 35.88 4.02
2913 3003 5.977635 TCTCATCAGTTGTGAATAATCCGT 58.022 37.500 0.00 0.00 35.88 4.69
2914 3004 6.199908 GTCTCTCATCAGTTGTGAATAATCCG 59.800 42.308 0.00 0.00 35.88 4.18
2915 3005 7.044181 TGTCTCTCATCAGTTGTGAATAATCC 58.956 38.462 0.00 0.00 35.88 3.01
2916 3006 8.386606 GTTGTCTCTCATCAGTTGTGAATAATC 58.613 37.037 0.00 0.00 35.88 1.75
2917 3007 8.099537 AGTTGTCTCTCATCAGTTGTGAATAAT 58.900 33.333 0.00 0.00 35.88 1.28
2918 3008 7.445121 AGTTGTCTCTCATCAGTTGTGAATAA 58.555 34.615 0.00 0.00 35.88 1.40
2919 3009 6.997655 AGTTGTCTCTCATCAGTTGTGAATA 58.002 36.000 0.00 0.00 35.88 1.75
2920 3010 5.862845 AGTTGTCTCTCATCAGTTGTGAAT 58.137 37.500 0.00 0.00 35.88 2.57
2921 3011 5.282055 AGTTGTCTCTCATCAGTTGTGAA 57.718 39.130 0.00 0.00 35.88 3.18
2922 3012 4.944619 AGTTGTCTCTCATCAGTTGTGA 57.055 40.909 0.00 0.00 37.02 3.58
2923 3013 4.813161 ACAAGTTGTCTCTCATCAGTTGTG 59.187 41.667 1.64 0.00 32.50 3.33
2924 3014 5.028549 ACAAGTTGTCTCTCATCAGTTGT 57.971 39.130 1.64 0.00 30.27 3.32
2925 3015 7.664082 AATACAAGTTGTCTCTCATCAGTTG 57.336 36.000 12.82 0.00 0.00 3.16
2926 3016 9.593134 GATAATACAAGTTGTCTCTCATCAGTT 57.407 33.333 12.82 0.00 0.00 3.16
2927 3017 8.753133 TGATAATACAAGTTGTCTCTCATCAGT 58.247 33.333 12.82 0.00 0.00 3.41
2928 3018 9.761504 ATGATAATACAAGTTGTCTCTCATCAG 57.238 33.333 12.82 0.00 0.00 2.90
2934 3024 9.614792 GGGTTTATGATAATACAAGTTGTCTCT 57.385 33.333 12.82 0.72 0.00 3.10
2935 3025 8.548721 CGGGTTTATGATAATACAAGTTGTCTC 58.451 37.037 12.82 6.35 0.00 3.36
2936 3026 8.262227 TCGGGTTTATGATAATACAAGTTGTCT 58.738 33.333 12.82 0.00 0.00 3.41
2937 3027 8.428186 TCGGGTTTATGATAATACAAGTTGTC 57.572 34.615 12.82 0.00 0.00 3.18
2938 3028 8.795842 TTCGGGTTTATGATAATACAAGTTGT 57.204 30.769 14.05 14.05 0.00 3.32
2941 3031 9.216117 GCTATTCGGGTTTATGATAATACAAGT 57.784 33.333 0.00 0.00 0.00 3.16
2942 3032 9.436957 AGCTATTCGGGTTTATGATAATACAAG 57.563 33.333 0.00 0.00 0.00 3.16
2944 3034 9.865321 GTAGCTATTCGGGTTTATGATAATACA 57.135 33.333 0.00 0.00 0.00 2.29
2945 3035 9.865321 TGTAGCTATTCGGGTTTATGATAATAC 57.135 33.333 0.00 0.00 0.00 1.89
2947 3037 9.787435 TTTGTAGCTATTCGGGTTTATGATAAT 57.213 29.630 0.00 0.00 0.00 1.28
2948 3038 9.616156 TTTTGTAGCTATTCGGGTTTATGATAA 57.384 29.630 0.00 0.00 0.00 1.75
2949 3039 9.787435 ATTTTGTAGCTATTCGGGTTTATGATA 57.213 29.630 0.00 0.00 0.00 2.15
2950 3040 8.691661 ATTTTGTAGCTATTCGGGTTTATGAT 57.308 30.769 0.00 0.00 0.00 2.45
2951 3041 8.402472 CAATTTTGTAGCTATTCGGGTTTATGA 58.598 33.333 0.00 0.00 0.00 2.15
2952 3042 7.647715 CCAATTTTGTAGCTATTCGGGTTTATG 59.352 37.037 0.00 0.00 0.00 1.90
2953 3043 7.201875 CCCAATTTTGTAGCTATTCGGGTTTAT 60.202 37.037 0.00 0.00 0.00 1.40
2954 3044 6.095720 CCCAATTTTGTAGCTATTCGGGTTTA 59.904 38.462 0.00 0.00 0.00 2.01
2955 3045 5.105513 CCCAATTTTGTAGCTATTCGGGTTT 60.106 40.000 0.00 0.00 0.00 3.27
2956 3046 4.401202 CCCAATTTTGTAGCTATTCGGGTT 59.599 41.667 0.00 0.00 0.00 4.11
2957 3047 3.951680 CCCAATTTTGTAGCTATTCGGGT 59.048 43.478 0.00 0.00 0.00 5.28
2958 3048 3.243401 GCCCAATTTTGTAGCTATTCGGG 60.243 47.826 0.00 3.44 0.00 5.14
2959 3049 3.632145 AGCCCAATTTTGTAGCTATTCGG 59.368 43.478 0.00 0.00 35.09 4.30
2960 3050 4.900635 AGCCCAATTTTGTAGCTATTCG 57.099 40.909 0.00 0.00 35.09 3.34
2961 3051 4.805719 GCAAGCCCAATTTTGTAGCTATTC 59.194 41.667 0.00 0.00 35.59 1.75
2962 3052 4.222588 TGCAAGCCCAATTTTGTAGCTATT 59.777 37.500 0.00 0.00 35.59 1.73
2963 3053 3.768757 TGCAAGCCCAATTTTGTAGCTAT 59.231 39.130 0.00 0.00 35.59 2.97
2964 3054 3.161067 TGCAAGCCCAATTTTGTAGCTA 58.839 40.909 5.75 0.00 35.59 3.32
2965 3055 1.969923 TGCAAGCCCAATTTTGTAGCT 59.030 42.857 0.00 0.00 37.45 3.32
2966 3056 2.453983 TGCAAGCCCAATTTTGTAGC 57.546 45.000 0.00 0.00 0.00 3.58
2967 3057 4.815846 ACTTTTGCAAGCCCAATTTTGTAG 59.184 37.500 0.00 0.00 32.57 2.74
2968 3058 4.775236 ACTTTTGCAAGCCCAATTTTGTA 58.225 34.783 0.00 0.00 32.57 2.41
2969 3059 3.619419 ACTTTTGCAAGCCCAATTTTGT 58.381 36.364 0.00 0.00 32.57 2.83
2970 3060 5.747951 TTACTTTTGCAAGCCCAATTTTG 57.252 34.783 0.00 0.00 32.57 2.44
2971 3061 6.376864 ACTTTTACTTTTGCAAGCCCAATTTT 59.623 30.769 0.00 0.00 32.57 1.82
2972 3062 5.885352 ACTTTTACTTTTGCAAGCCCAATTT 59.115 32.000 0.00 0.00 32.57 1.82
2973 3063 5.436175 ACTTTTACTTTTGCAAGCCCAATT 58.564 33.333 0.00 0.00 32.57 2.32
2974 3064 5.034852 ACTTTTACTTTTGCAAGCCCAAT 57.965 34.783 0.00 0.00 32.57 3.16
2975 3065 4.479786 ACTTTTACTTTTGCAAGCCCAA 57.520 36.364 0.00 0.00 32.57 4.12
2976 3066 4.402793 TGTACTTTTACTTTTGCAAGCCCA 59.597 37.500 0.00 0.00 32.57 5.36
2977 3067 4.939271 TGTACTTTTACTTTTGCAAGCCC 58.061 39.130 0.00 0.00 32.57 5.19
2978 3068 6.311690 TGTTTGTACTTTTACTTTTGCAAGCC 59.688 34.615 0.00 0.00 32.57 4.35
2979 3069 7.284518 TGTTTGTACTTTTACTTTTGCAAGC 57.715 32.000 0.00 0.00 32.57 4.01
2980 3070 9.081997 TCATGTTTGTACTTTTACTTTTGCAAG 57.918 29.630 0.00 0.00 35.92 4.01
2981 3071 8.988064 TCATGTTTGTACTTTTACTTTTGCAA 57.012 26.923 0.00 0.00 0.00 4.08
2982 3072 8.247562 ACTCATGTTTGTACTTTTACTTTTGCA 58.752 29.630 0.00 0.00 0.00 4.08
2983 3073 8.628882 ACTCATGTTTGTACTTTTACTTTTGC 57.371 30.769 0.00 0.00 0.00 3.68
2998 3088 9.904647 CTTCAACAACAAAAATACTCATGTTTG 57.095 29.630 0.00 0.00 42.75 2.93
2999 3089 9.097257 CCTTCAACAACAAAAATACTCATGTTT 57.903 29.630 0.00 0.00 33.97 2.83
3000 3090 8.257306 ACCTTCAACAACAAAAATACTCATGTT 58.743 29.630 0.00 0.00 36.49 2.71
3001 3091 7.781056 ACCTTCAACAACAAAAATACTCATGT 58.219 30.769 0.00 0.00 0.00 3.21
3002 3092 9.180678 GTACCTTCAACAACAAAAATACTCATG 57.819 33.333 0.00 0.00 0.00 3.07
3003 3093 9.131791 AGTACCTTCAACAACAAAAATACTCAT 57.868 29.630 0.00 0.00 0.00 2.90
3004 3094 8.402472 CAGTACCTTCAACAACAAAAATACTCA 58.598 33.333 0.00 0.00 0.00 3.41
3005 3095 8.403236 ACAGTACCTTCAACAACAAAAATACTC 58.597 33.333 0.00 0.00 0.00 2.59
3006 3096 8.288689 ACAGTACCTTCAACAACAAAAATACT 57.711 30.769 0.00 0.00 0.00 2.12
3009 3099 9.930693 TTTTACAGTACCTTCAACAACAAAAAT 57.069 25.926 0.00 0.00 0.00 1.82
3010 3100 9.760077 TTTTTACAGTACCTTCAACAACAAAAA 57.240 25.926 0.00 0.00 0.00 1.94
3011 3101 9.930693 ATTTTTACAGTACCTTCAACAACAAAA 57.069 25.926 0.00 0.00 0.00 2.44
3053 3143 9.506018 AGCCAAAAGAAAATTTAACATATTGCT 57.494 25.926 0.00 0.00 0.00 3.91
3068 3158 9.480053 CAAGAAGATCATTTAAGCCAAAAGAAA 57.520 29.630 0.00 0.00 28.41 2.52
3069 3159 8.859090 TCAAGAAGATCATTTAAGCCAAAAGAA 58.141 29.630 0.00 0.00 28.41 2.52
3070 3160 8.299570 GTCAAGAAGATCATTTAAGCCAAAAGA 58.700 33.333 0.00 0.00 0.00 2.52
3071 3161 8.084073 TGTCAAGAAGATCATTTAAGCCAAAAG 58.916 33.333 0.00 0.00 0.00 2.27
3072 3162 7.950512 TGTCAAGAAGATCATTTAAGCCAAAA 58.049 30.769 0.00 0.00 0.00 2.44
3073 3163 7.523293 TGTCAAGAAGATCATTTAAGCCAAA 57.477 32.000 0.00 0.00 0.00 3.28
3074 3164 7.523293 TTGTCAAGAAGATCATTTAAGCCAA 57.477 32.000 0.00 0.00 0.00 4.52
3075 3165 7.707624 ATTGTCAAGAAGATCATTTAAGCCA 57.292 32.000 0.00 0.00 0.00 4.75
3076 3166 8.992835 AAATTGTCAAGAAGATCATTTAAGCC 57.007 30.769 0.00 0.00 0.00 4.35
3083 3173 9.865321 CATACCAAAAATTGTCAAGAAGATCAT 57.135 29.630 0.00 0.00 0.00 2.45
3084 3174 7.814107 GCATACCAAAAATTGTCAAGAAGATCA 59.186 33.333 0.00 0.00 0.00 2.92
3085 3175 8.031277 AGCATACCAAAAATTGTCAAGAAGATC 58.969 33.333 0.00 0.00 0.00 2.75
3086 3176 7.899973 AGCATACCAAAAATTGTCAAGAAGAT 58.100 30.769 0.00 0.00 0.00 2.40
3087 3177 7.288810 AGCATACCAAAAATTGTCAAGAAGA 57.711 32.000 0.00 0.00 0.00 2.87
3090 3180 8.405531 GCTATAGCATACCAAAAATTGTCAAGA 58.594 33.333 20.01 0.00 41.59 3.02
3091 3181 8.566008 GCTATAGCATACCAAAAATTGTCAAG 57.434 34.615 20.01 0.00 41.59 3.02
3395 3485 2.816087 CAAATACTTCTGCACCACTGCT 59.184 45.455 0.00 0.00 44.57 4.24
3396 3486 2.095059 CCAAATACTTCTGCACCACTGC 60.095 50.000 0.00 0.00 44.52 4.40
3397 3487 2.489329 CCCAAATACTTCTGCACCACTG 59.511 50.000 0.00 0.00 0.00 3.66
3398 3488 2.795329 CCCAAATACTTCTGCACCACT 58.205 47.619 0.00 0.00 0.00 4.00
3399 3489 1.202348 GCCCAAATACTTCTGCACCAC 59.798 52.381 0.00 0.00 0.00 4.16
3400 3490 1.544724 GCCCAAATACTTCTGCACCA 58.455 50.000 0.00 0.00 0.00 4.17
3401 3491 0.817654 GGCCCAAATACTTCTGCACC 59.182 55.000 0.00 0.00 0.00 5.01
3402 3492 1.544724 TGGCCCAAATACTTCTGCAC 58.455 50.000 0.00 0.00 0.00 4.57
3403 3493 2.101783 CATGGCCCAAATACTTCTGCA 58.898 47.619 0.00 0.00 0.00 4.41
3404 3494 1.202452 GCATGGCCCAAATACTTCTGC 60.202 52.381 0.00 0.00 0.00 4.26
3405 3495 2.101783 TGCATGGCCCAAATACTTCTG 58.898 47.619 0.00 0.00 0.00 3.02
3406 3496 2.530460 TGCATGGCCCAAATACTTCT 57.470 45.000 0.00 0.00 0.00 2.85
3407 3497 3.608316 TTTGCATGGCCCAAATACTTC 57.392 42.857 0.00 0.00 0.00 3.01
3408 3498 4.363991 TTTTTGCATGGCCCAAATACTT 57.636 36.364 0.00 0.00 32.76 2.24
3409 3499 4.263435 CATTTTTGCATGGCCCAAATACT 58.737 39.130 0.00 0.00 32.76 2.12
3410 3500 3.377798 CCATTTTTGCATGGCCCAAATAC 59.622 43.478 0.00 0.00 37.51 1.89
3411 3501 3.265221 TCCATTTTTGCATGGCCCAAATA 59.735 39.130 0.00 0.00 43.31 1.40
3412 3502 2.041350 TCCATTTTTGCATGGCCCAAAT 59.959 40.909 0.00 0.00 43.31 2.32
3413 3503 1.422781 TCCATTTTTGCATGGCCCAAA 59.577 42.857 0.00 0.00 43.31 3.28
3414 3504 1.003349 CTCCATTTTTGCATGGCCCAA 59.997 47.619 0.00 0.00 43.31 4.12
3415 3505 0.614294 CTCCATTTTTGCATGGCCCA 59.386 50.000 0.00 0.00 43.31 5.36
3416 3506 0.614812 ACTCCATTTTTGCATGGCCC 59.385 50.000 0.00 0.00 43.31 5.80
3417 3507 1.002315 ACACTCCATTTTTGCATGGCC 59.998 47.619 0.00 0.00 43.31 5.36
3418 3508 2.070783 CACACTCCATTTTTGCATGGC 58.929 47.619 0.00 0.00 43.31 4.40
3419 3509 3.663995 TCACACTCCATTTTTGCATGG 57.336 42.857 0.00 0.00 44.80 3.66
3420 3510 5.987777 TTTTCACACTCCATTTTTGCATG 57.012 34.783 0.00 0.00 0.00 4.06
3421 3511 6.347696 TCTTTTTCACACTCCATTTTTGCAT 58.652 32.000 0.00 0.00 0.00 3.96
3422 3512 5.728471 TCTTTTTCACACTCCATTTTTGCA 58.272 33.333 0.00 0.00 0.00 4.08
3423 3513 6.479660 TCATCTTTTTCACACTCCATTTTTGC 59.520 34.615 0.00 0.00 0.00 3.68
3424 3514 8.597662 ATCATCTTTTTCACACTCCATTTTTG 57.402 30.769 0.00 0.00 0.00 2.44
3426 3516 9.918630 CTTATCATCTTTTTCACACTCCATTTT 57.081 29.630 0.00 0.00 0.00 1.82
3427 3517 9.082313 ACTTATCATCTTTTTCACACTCCATTT 57.918 29.630 0.00 0.00 0.00 2.32
3428 3518 8.641498 ACTTATCATCTTTTTCACACTCCATT 57.359 30.769 0.00 0.00 0.00 3.16
3429 3519 9.167311 GTACTTATCATCTTTTTCACACTCCAT 57.833 33.333 0.00 0.00 0.00 3.41
3430 3520 8.154203 TGTACTTATCATCTTTTTCACACTCCA 58.846 33.333 0.00 0.00 0.00 3.86
3431 3521 8.547967 TGTACTTATCATCTTTTTCACACTCC 57.452 34.615 0.00 0.00 0.00 3.85
3466 3556 4.810491 GCTTCAAAATCACTGCTCCAAAAA 59.190 37.500 0.00 0.00 0.00 1.94
3467 3557 4.141981 TGCTTCAAAATCACTGCTCCAAAA 60.142 37.500 0.00 0.00 0.00 2.44
3468 3558 3.384146 TGCTTCAAAATCACTGCTCCAAA 59.616 39.130 0.00 0.00 0.00 3.28
3469 3559 2.957680 TGCTTCAAAATCACTGCTCCAA 59.042 40.909 0.00 0.00 0.00 3.53
3470 3560 2.585330 TGCTTCAAAATCACTGCTCCA 58.415 42.857 0.00 0.00 0.00 3.86
3471 3561 3.648339 TTGCTTCAAAATCACTGCTCC 57.352 42.857 0.00 0.00 0.00 4.70
3472 3562 4.387862 CCAATTGCTTCAAAATCACTGCTC 59.612 41.667 0.00 0.00 0.00 4.26
3473 3563 4.039488 TCCAATTGCTTCAAAATCACTGCT 59.961 37.500 0.00 0.00 0.00 4.24
3474 3564 4.309099 TCCAATTGCTTCAAAATCACTGC 58.691 39.130 0.00 0.00 0.00 4.40
3475 3565 5.404366 CACTCCAATTGCTTCAAAATCACTG 59.596 40.000 0.00 0.00 0.00 3.66
3476 3566 5.069516 ACACTCCAATTGCTTCAAAATCACT 59.930 36.000 0.00 0.00 0.00 3.41
3477 3567 5.291971 ACACTCCAATTGCTTCAAAATCAC 58.708 37.500 0.00 0.00 0.00 3.06
3478 3568 5.534207 ACACTCCAATTGCTTCAAAATCA 57.466 34.783 0.00 0.00 0.00 2.57
3479 3569 8.031277 AGATAACACTCCAATTGCTTCAAAATC 58.969 33.333 0.00 0.00 0.00 2.17
3480 3570 7.899973 AGATAACACTCCAATTGCTTCAAAAT 58.100 30.769 0.00 0.00 0.00 1.82
3481 3571 7.288810 AGATAACACTCCAATTGCTTCAAAA 57.711 32.000 0.00 0.00 0.00 2.44
3482 3572 6.899393 AGATAACACTCCAATTGCTTCAAA 57.101 33.333 0.00 0.00 0.00 2.69
3483 3573 8.049117 AGATAGATAACACTCCAATTGCTTCAA 58.951 33.333 0.00 0.00 0.00 2.69
3484 3574 7.568349 AGATAGATAACACTCCAATTGCTTCA 58.432 34.615 0.00 0.00 0.00 3.02
3485 3575 9.547753 TTAGATAGATAACACTCCAATTGCTTC 57.452 33.333 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.