Multiple sequence alignment - TraesCS5A01G435900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G435900 chr5A 100.000 3812 0 0 1 3812 619090762 619094573 0.000000e+00 7040.0
1 TraesCS5A01G435900 chr5B 94.001 2734 118 13 859 3580 611473962 611476661 0.000000e+00 4098.0
2 TraesCS5A01G435900 chr5B 85.651 453 43 14 1 439 611472957 611473401 1.250000e-124 457.0
3 TraesCS5A01G435900 chr5B 77.473 364 38 19 515 872 611473620 611473945 1.090000e-40 178.0
4 TraesCS5A01G435900 chr5D 89.056 3134 229 65 509 3579 495024363 495027445 0.000000e+00 3783.0
5 TraesCS5A01G435900 chr5D 86.199 442 44 11 2 438 495023722 495024151 2.680000e-126 462.0
6 TraesCS5A01G435900 chr5D 100.000 167 0 0 3582 3748 319691588 319691422 3.700000e-80 309.0
7 TraesCS5A01G435900 chr5D 93.651 63 4 0 450 512 495024205 495024267 1.130000e-15 95.3
8 TraesCS5A01G435900 chr5D 92.000 50 3 1 3762 3810 308859811 308859762 6.830000e-08 69.4
9 TraesCS5A01G435900 chr5D 87.500 48 5 1 3762 3808 358579753 358579706 2.000000e-03 54.7
10 TraesCS5A01G435900 chr7A 99.419 172 1 0 3576 3747 374559945 374559774 2.860000e-81 313.0
11 TraesCS5A01G435900 chr7A 97.753 178 2 2 3582 3758 561596269 561596093 4.780000e-79 305.0
12 TraesCS5A01G435900 chr7A 99.405 168 1 0 3580 3747 638133948 638133781 4.780000e-79 305.0
13 TraesCS5A01G435900 chr4A 94.660 206 4 7 3564 3765 567682111 567681909 2.860000e-81 313.0
14 TraesCS5A01G435900 chr4A 90.000 50 4 1 3762 3810 201603075 201603026 3.180000e-06 63.9
15 TraesCS5A01G435900 chr3B 100.000 169 0 0 3579 3747 106897764 106897596 2.860000e-81 313.0
16 TraesCS5A01G435900 chr2A 100.000 168 0 0 3580 3747 116445916 116446083 1.030000e-80 311.0
17 TraesCS5A01G435900 chr6B 100.000 167 0 0 3581 3747 433045269 433045103 3.700000e-80 309.0
18 TraesCS5A01G435900 chr6B 100.000 167 0 0 3581 3747 602841103 602840937 3.700000e-80 309.0
19 TraesCS5A01G435900 chr6A 94.000 50 2 1 3762 3810 614820877 614820828 1.470000e-09 75.0
20 TraesCS5A01G435900 chr4D 94.000 50 2 1 3762 3810 385745030 385745079 1.470000e-09 75.0
21 TraesCS5A01G435900 chr4D 90.196 51 4 1 3761 3810 91054333 91054283 8.840000e-07 65.8
22 TraesCS5A01G435900 chr4B 90.000 50 4 1 3762 3810 472397625 472397674 3.180000e-06 63.9
23 TraesCS5A01G435900 chr3D 91.489 47 3 1 3762 3807 303401874 303401920 3.180000e-06 63.9
24 TraesCS5A01G435900 chr2D 92.308 39 1 1 3762 3800 272998511 272998475 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G435900 chr5A 619090762 619094573 3811 False 7040.000000 7040 100.000000 1 3812 1 chr5A.!!$F1 3811
1 TraesCS5A01G435900 chr5B 611472957 611476661 3704 False 1577.666667 4098 85.708333 1 3580 3 chr5B.!!$F1 3579
2 TraesCS5A01G435900 chr5D 495023722 495027445 3723 False 1446.766667 3783 89.635333 2 3579 3 chr5D.!!$F1 3577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 37 0.036388 TGATGAAGGTGAACGCCTCC 60.036 55.0 7.39 0.0 38.03 4.30 F
959 1153 0.806241 GAGGTGGAGAGTGAGACGAC 59.194 60.0 0.00 0.0 0.00 4.34 F
1794 1997 0.839853 AGGCAGGGCTTGACTCTCTT 60.840 55.0 0.00 0.0 43.64 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2201 0.176680 AGAGCACGCCTAGGAATGTG 59.823 55.0 14.75 17.74 35.48 3.21 R
2315 2518 0.237235 GTTGGCGCACAAATTCGAGA 59.763 50.0 10.83 0.00 41.58 4.04 R
3647 3873 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.0 8.73 0.00 40.08 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 0.036388 TGATGAAGGTGAACGCCTCC 60.036 55.000 7.39 0.00 38.03 4.30
121 123 5.381757 TGGTAAGTGTGGTGCTAAGAAAAT 58.618 37.500 0.00 0.00 0.00 1.82
123 125 3.923017 AGTGTGGTGCTAAGAAAATGC 57.077 42.857 0.00 0.00 0.00 3.56
144 146 2.692557 CCATTTTGTGGGTGACAACTCA 59.307 45.455 0.00 0.00 44.53 3.41
218 220 5.128033 TCAATGTCATGTGGGGATACAAT 57.872 39.130 0.00 0.00 39.74 2.71
224 226 5.885352 TGTCATGTGGGGATACAATTACTTG 59.115 40.000 0.00 0.00 38.39 3.16
233 235 6.340522 GGGATACAATTACTTGCTGCAAAAT 58.659 36.000 16.74 11.10 35.69 1.82
235 237 7.010460 GGGATACAATTACTTGCTGCAAAATTC 59.990 37.037 16.74 8.20 35.69 2.17
236 238 7.545265 GGATACAATTACTTGCTGCAAAATTCA 59.455 33.333 16.74 10.12 35.69 2.57
238 240 7.124347 ACAATTACTTGCTGCAAAATTCATG 57.876 32.000 16.74 12.83 35.69 3.07
239 241 6.707161 ACAATTACTTGCTGCAAAATTCATGT 59.293 30.769 16.74 13.40 35.69 3.21
240 242 7.871973 ACAATTACTTGCTGCAAAATTCATGTA 59.128 29.630 16.74 9.96 35.69 2.29
305 313 2.158682 TCCGTGTGGCCATTATTAGCAT 60.159 45.455 9.72 0.00 34.14 3.79
487 542 5.789574 TGGGATTACAAGGTAAACTCCAT 57.210 39.130 9.68 0.00 0.00 3.41
512 567 1.254975 TTGTTGGAGATCGCCGAGGA 61.255 55.000 11.16 0.00 0.00 3.71
518 573 2.029666 GATCGCCGAGGACATGGG 59.970 66.667 0.00 0.00 0.00 4.00
525 680 2.401766 CGAGGACATGGGCAAGTGC 61.402 63.158 0.00 0.00 41.14 4.40
535 690 3.910490 GCAAGTGCGGTGCCCAAA 61.910 61.111 0.00 0.00 35.91 3.28
536 691 2.811101 CAAGTGCGGTGCCCAAAA 59.189 55.556 0.00 0.00 0.00 2.44
559 714 2.828877 ACATCGTTTCGAAGGTGACAA 58.171 42.857 4.80 0.00 39.99 3.18
561 716 2.096417 CATCGTTTCGAAGGTGACAACC 60.096 50.000 0.00 0.00 41.64 3.77
575 730 4.250464 GTGACAACCGGAATAGACAATGA 58.750 43.478 9.46 0.00 0.00 2.57
580 735 5.768164 ACAACCGGAATAGACAATGAAGTTT 59.232 36.000 9.46 0.00 0.00 2.66
607 762 8.138074 TCATCCAAATACATTTCTCTAGACTCG 58.862 37.037 0.00 0.00 0.00 4.18
616 771 8.918961 ACATTTCTCTAGACTCGTATTTTCAG 57.081 34.615 0.00 0.00 0.00 3.02
617 772 8.740906 ACATTTCTCTAGACTCGTATTTTCAGA 58.259 33.333 0.00 0.00 0.00 3.27
618 773 9.574458 CATTTCTCTAGACTCGTATTTTCAGAA 57.426 33.333 0.00 0.00 0.00 3.02
620 775 9.790389 TTTCTCTAGACTCGTATTTTCAGAATC 57.210 33.333 0.00 0.00 0.00 2.52
621 776 8.507524 TCTCTAGACTCGTATTTTCAGAATCA 57.492 34.615 0.00 0.00 0.00 2.57
622 777 9.126151 TCTCTAGACTCGTATTTTCAGAATCAT 57.874 33.333 0.00 0.00 0.00 2.45
623 778 9.179552 CTCTAGACTCGTATTTTCAGAATCATG 57.820 37.037 0.00 0.00 0.00 3.07
624 779 8.687242 TCTAGACTCGTATTTTCAGAATCATGT 58.313 33.333 0.00 0.00 0.00 3.21
645 800 4.398358 TGTGAGGAGTAGAACTATTCACCG 59.602 45.833 15.27 0.00 39.20 4.94
653 809 8.601476 GGAGTAGAACTATTCACCGTAAAAATG 58.399 37.037 6.67 0.00 0.00 2.32
725 887 4.937620 TCATGTGGTCTTTATCAGCAACTC 59.062 41.667 0.00 0.00 0.00 3.01
750 913 9.862371 TCAAAAACAAAAGAGTAATAAAGCACA 57.138 25.926 0.00 0.00 0.00 4.57
786 950 7.958567 CGCTTATTTATCAAAACTTACGGAACA 59.041 33.333 0.00 0.00 0.00 3.18
792 956 8.844441 TTATCAAAACTTACGGAACACAAAAG 57.156 30.769 0.00 0.00 0.00 2.27
795 959 7.368833 TCAAAACTTACGGAACACAAAAGAAA 58.631 30.769 0.00 0.00 0.00 2.52
796 960 7.866393 TCAAAACTTACGGAACACAAAAGAAAA 59.134 29.630 0.00 0.00 0.00 2.29
833 997 6.947903 TTGCGAAACAAATACTCGTATACA 57.052 33.333 3.32 0.00 34.56 2.29
834 998 6.563398 TGCGAAACAAATACTCGTATACAG 57.437 37.500 3.32 2.58 35.06 2.74
835 999 6.094719 TGCGAAACAAATACTCGTATACAGT 58.905 36.000 3.32 8.18 35.06 3.55
836 1000 7.249858 TGCGAAACAAATACTCGTATACAGTA 58.750 34.615 13.84 13.84 35.06 2.74
837 1001 7.916977 TGCGAAACAAATACTCGTATACAGTAT 59.083 33.333 16.09 16.09 38.48 2.12
838 1002 9.385902 GCGAAACAAATACTCGTATACAGTATA 57.614 33.333 19.48 0.00 36.26 1.47
872 1036 5.547465 ACATTTAAATGGTCTCTGACACGA 58.453 37.500 27.43 0.00 40.70 4.35
902 1096 1.175983 TGTAAGCCCAACCCGCAAAG 61.176 55.000 0.00 0.00 0.00 2.77
915 1109 3.118454 CAAAGCATCCGACGCCGT 61.118 61.111 0.00 0.00 0.00 5.68
916 1110 3.118454 AAAGCATCCGACGCCGTG 61.118 61.111 0.00 0.00 0.00 4.94
917 1111 3.876589 AAAGCATCCGACGCCGTGT 62.877 57.895 0.00 0.00 0.00 4.49
935 1129 3.458189 GTGTGATGTAATCTTCTCCGGG 58.542 50.000 0.00 0.00 45.81 5.73
959 1153 0.806241 GAGGTGGAGAGTGAGACGAC 59.194 60.000 0.00 0.00 0.00 4.34
1050 1244 2.602676 CCCTCTCCTTCCCGCCAAA 61.603 63.158 0.00 0.00 0.00 3.28
1374 1577 3.746949 GATGCTGGAGGAGGGCGTG 62.747 68.421 0.00 0.00 0.00 5.34
1620 1823 4.891727 ATGATCACCGCCGCCGTC 62.892 66.667 0.00 0.00 0.00 4.79
1695 1898 2.167861 GCTCAAGCCGACGTCCATC 61.168 63.158 10.58 0.00 34.31 3.51
1707 1910 1.671742 GTCCATCACGGTGACCAGT 59.328 57.895 13.92 0.00 35.57 4.00
1794 1997 0.839853 AGGCAGGGCTTGACTCTCTT 60.840 55.000 0.00 0.00 43.64 2.85
2088 2291 5.412904 CGACAGCATGAGAGAGTATGGTATA 59.587 44.000 0.00 0.00 39.69 1.47
2109 2312 7.038231 GGTATAGTTCCTGGGATAAAGCACTAT 60.038 40.741 11.65 11.65 32.36 2.12
2161 2364 2.229062 GGTCAGCTTGAAAAGGCTTACC 59.771 50.000 0.00 0.00 46.35 2.85
2315 2518 8.034313 ACTCATGGTGGTGACTATGTAATATT 57.966 34.615 0.00 0.00 40.89 1.28
2322 2525 8.088981 GGTGGTGACTATGTAATATTCTCGAAT 58.911 37.037 0.00 0.00 30.55 3.34
2390 2593 1.137675 GCTGATGAATGAAAAGGGGGC 59.862 52.381 0.00 0.00 0.00 5.80
2471 2674 0.984230 GGAGATGGAAGACACCCACA 59.016 55.000 0.00 0.00 36.36 4.17
2472 2675 1.351017 GGAGATGGAAGACACCCACAA 59.649 52.381 0.00 0.00 36.36 3.33
2473 2676 2.025887 GGAGATGGAAGACACCCACAAT 60.026 50.000 0.00 0.00 36.36 2.71
2474 2677 3.274288 GAGATGGAAGACACCCACAATC 58.726 50.000 0.00 0.00 36.36 2.67
2475 2678 2.644299 AGATGGAAGACACCCACAATCA 59.356 45.455 0.00 0.00 36.36 2.57
2476 2679 2.270352 TGGAAGACACCCACAATCAC 57.730 50.000 0.00 0.00 0.00 3.06
2477 2680 1.492599 TGGAAGACACCCACAATCACA 59.507 47.619 0.00 0.00 0.00 3.58
2478 2681 2.092158 TGGAAGACACCCACAATCACAA 60.092 45.455 0.00 0.00 0.00 3.33
2479 2682 2.554032 GGAAGACACCCACAATCACAAG 59.446 50.000 0.00 0.00 0.00 3.16
2485 2688 2.494471 CACCCACAATCACAAGATGCAT 59.506 45.455 0.00 0.00 33.90 3.96
2500 2703 0.456628 TGCATGCCGAATGGTTGATG 59.543 50.000 16.68 0.00 36.71 3.07
2517 2720 3.268330 TGATGAAGTGATTGAGCAGCTC 58.732 45.455 16.21 16.21 0.00 4.09
2547 2750 5.422970 TGTTGGTTATGTCCCTAATACGTCT 59.577 40.000 0.00 0.00 0.00 4.18
2563 2766 2.028930 ACGTCTCAGGTCTTCCATGTTC 60.029 50.000 0.00 0.00 35.89 3.18
2604 2807 3.214696 GCCACAAGCCTAAGATACCAT 57.785 47.619 0.00 0.00 34.35 3.55
2635 2838 0.526211 GGCGATTTCTTTCGGGCTTT 59.474 50.000 0.00 0.00 39.49 3.51
2640 2843 4.089493 GCGATTTCTTTCGGGCTTTTAAAC 59.911 41.667 0.00 0.00 39.49 2.01
2819 3022 6.380274 TGTGGAGACTACTGGTAGATTTTAGG 59.620 42.308 13.83 0.00 36.97 2.69
2839 3042 7.513190 TTAGGAACACAATTTTTGTTTCACG 57.487 32.000 8.93 0.00 43.23 4.35
2850 3053 6.801539 TTTTTGTTTCACGATGCTCTATCT 57.198 33.333 0.00 0.00 33.44 1.98
2871 3074 3.997021 CTCTGTTGTGTCCATTCAGGTAC 59.003 47.826 0.00 0.00 39.02 3.34
2881 3084 3.000727 CCATTCAGGTACGGTCAACTTC 58.999 50.000 0.00 0.00 0.00 3.01
2905 3108 3.855689 ATGCATGCCAAACTAACTGAC 57.144 42.857 16.68 0.00 0.00 3.51
2974 3177 4.994907 AACCCAAAGTTTGTTACTGGAC 57.005 40.909 14.36 0.00 37.12 4.02
3073 3276 6.201806 CCTTGCAGAGCATTACTATCTGTTAC 59.798 42.308 3.63 0.00 41.99 2.50
3297 3510 6.099701 ACATGGGAGTCTGTATGCAGTTATAA 59.900 38.462 10.80 0.00 43.05 0.98
3379 3598 7.107639 TGTTCTGATATACTGTTTCGATGGA 57.892 36.000 0.00 0.00 0.00 3.41
3415 3634 6.016860 GGTTGTACCGAACTGTTTATTTCCTT 60.017 38.462 0.00 0.00 0.00 3.36
3423 3642 7.378728 CCGAACTGTTTATTTCCTTTTCTCAAC 59.621 37.037 0.00 0.00 0.00 3.18
3424 3643 7.913297 CGAACTGTTTATTTCCTTTTCTCAACA 59.087 33.333 0.00 0.00 0.00 3.33
3485 3708 8.770438 TGTTTCTAGTTGCATTTTGTTTCTTT 57.230 26.923 0.00 0.00 0.00 2.52
3486 3709 9.862371 TGTTTCTAGTTGCATTTTGTTTCTTTA 57.138 25.926 0.00 0.00 0.00 1.85
3595 3821 4.517934 CCATGAGGGCAGGCCTGG 62.518 72.222 33.46 13.15 36.10 4.45
3608 3834 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
3609 3835 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
3610 3836 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
3611 3837 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
3612 3838 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
3613 3839 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
3614 3840 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
3615 3841 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
3616 3842 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
3617 3843 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
3618 3844 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
3619 3845 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
3620 3846 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
3621 3847 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
3622 3848 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
3623 3849 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
3624 3850 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
3625 3851 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
3626 3852 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
3627 3853 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
3628 3854 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
3629 3855 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
3630 3856 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
3631 3857 1.604593 CCCCACTTGTGCCAAGAGG 60.605 63.158 18.22 18.17 38.23 3.69
3632 3858 1.151450 CCCACTTGTGCCAAGAGGT 59.849 57.895 21.11 2.99 37.19 3.85
3633 3859 0.890996 CCCACTTGTGCCAAGAGGTC 60.891 60.000 21.11 0.00 37.19 3.85
3634 3860 0.890996 CCACTTGTGCCAAGAGGTCC 60.891 60.000 18.22 0.00 37.19 4.46
3635 3861 0.109342 CACTTGTGCCAAGAGGTCCT 59.891 55.000 18.22 0.00 37.19 3.85
3636 3862 0.109342 ACTTGTGCCAAGAGGTCCTG 59.891 55.000 18.22 0.00 37.19 3.86
3637 3863 0.607489 CTTGTGCCAAGAGGTCCTGG 60.607 60.000 0.00 0.00 37.19 4.45
3638 3864 2.067932 TTGTGCCAAGAGGTCCTGGG 62.068 60.000 0.00 0.00 39.14 4.45
3639 3865 2.121963 TGCCAAGAGGTCCTGGGT 60.122 61.111 0.00 0.00 38.32 4.51
3640 3866 1.774217 TGCCAAGAGGTCCTGGGTT 60.774 57.895 0.00 0.00 38.32 4.11
3641 3867 1.002011 GCCAAGAGGTCCTGGGTTC 60.002 63.158 0.00 0.00 38.32 3.62
3642 3868 1.296715 CCAAGAGGTCCTGGGTTCG 59.703 63.158 0.00 0.00 30.82 3.95
3643 3869 1.192146 CCAAGAGGTCCTGGGTTCGA 61.192 60.000 0.00 0.00 30.82 3.71
3644 3870 0.685097 CAAGAGGTCCTGGGTTCGAA 59.315 55.000 0.00 0.00 0.00 3.71
3645 3871 0.685660 AAGAGGTCCTGGGTTCGAAC 59.314 55.000 20.14 20.14 0.00 3.95
3656 3882 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
3657 3883 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
3658 3884 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
3659 3885 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
3660 3886 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
3661 3887 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
3662 3888 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
3663 3889 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
3664 3890 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
3665 3891 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
3666 3892 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
3667 3893 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
3668 3894 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
3669 3895 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
3679 3905 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
3680 3906 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
3681 3907 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
3682 3908 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
3683 3909 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
3684 3910 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
3685 3911 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
3686 3912 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
3687 3913 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
3688 3914 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
3689 3915 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
3690 3916 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
3691 3917 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
3692 3918 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
3693 3919 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
3694 3920 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
3695 3921 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
3696 3922 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
3697 3923 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
3698 3924 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
3699 3925 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
3700 3926 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
3701 3927 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
3702 3928 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
3703 3929 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
3704 3930 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
3705 3931 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
3706 3932 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
3707 3933 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
3708 3934 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
3709 3935 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
3710 3936 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
3711 3937 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
3713 3939 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
3714 3940 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
3715 3941 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
3716 3942 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
3717 3943 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
3718 3944 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
3719 3945 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
3726 3952 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
3727 3953 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
3728 3954 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
3729 3955 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
3730 3956 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
3731 3957 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
3732 3958 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
3733 3959 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
3734 3960 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
3735 3961 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
3736 3962 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
3737 3963 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
3738 3964 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
3739 3965 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
3740 3966 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
3741 3967 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
3742 3968 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
3743 3969 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
3744 3970 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
3745 3971 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
3746 3972 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
3747 3973 0.904649 TATGCACTGGGTCTGTCCTG 59.095 55.000 0.00 0.00 36.25 3.86
3748 3974 0.837691 ATGCACTGGGTCTGTCCTGA 60.838 55.000 0.00 0.00 36.25 3.86
3749 3975 1.053835 TGCACTGGGTCTGTCCTGAA 61.054 55.000 0.00 0.00 36.25 3.02
3750 3976 0.326264 GCACTGGGTCTGTCCTGAAT 59.674 55.000 0.00 0.00 36.25 2.57
3751 3977 1.947678 GCACTGGGTCTGTCCTGAATG 60.948 57.143 0.00 0.00 36.25 2.67
3752 3978 0.326264 ACTGGGTCTGTCCTGAATGC 59.674 55.000 0.00 0.00 36.25 3.56
3753 3979 0.325933 CTGGGTCTGTCCTGAATGCA 59.674 55.000 0.00 0.00 36.25 3.96
3754 3980 0.770499 TGGGTCTGTCCTGAATGCAA 59.230 50.000 0.00 0.00 36.25 4.08
3755 3981 1.355381 TGGGTCTGTCCTGAATGCAAT 59.645 47.619 0.00 0.00 36.25 3.56
3756 3982 2.225091 TGGGTCTGTCCTGAATGCAATT 60.225 45.455 0.00 0.00 36.18 2.32
3767 3993 2.250921 AATGCAATTCCCCATCACCA 57.749 45.000 0.00 0.00 0.00 4.17
3768 3994 2.250921 ATGCAATTCCCCATCACCAA 57.749 45.000 0.00 0.00 0.00 3.67
3769 3995 2.021262 TGCAATTCCCCATCACCAAA 57.979 45.000 0.00 0.00 0.00 3.28
3770 3996 1.901159 TGCAATTCCCCATCACCAAAG 59.099 47.619 0.00 0.00 0.00 2.77
3771 3997 2.178580 GCAATTCCCCATCACCAAAGA 58.821 47.619 0.00 0.00 0.00 2.52
3772 3998 2.566724 GCAATTCCCCATCACCAAAGAA 59.433 45.455 0.00 0.00 0.00 2.52
3773 3999 3.617288 GCAATTCCCCATCACCAAAGAAC 60.617 47.826 0.00 0.00 0.00 3.01
3774 4000 3.833559 ATTCCCCATCACCAAAGAACT 57.166 42.857 0.00 0.00 0.00 3.01
3775 4001 4.946160 ATTCCCCATCACCAAAGAACTA 57.054 40.909 0.00 0.00 0.00 2.24
3776 4002 4.301072 TTCCCCATCACCAAAGAACTAG 57.699 45.455 0.00 0.00 0.00 2.57
3777 4003 2.026262 TCCCCATCACCAAAGAACTAGC 60.026 50.000 0.00 0.00 0.00 3.42
3778 4004 2.369394 CCCATCACCAAAGAACTAGCC 58.631 52.381 0.00 0.00 0.00 3.93
3779 4005 2.290896 CCCATCACCAAAGAACTAGCCA 60.291 50.000 0.00 0.00 0.00 4.75
3780 4006 3.624777 CCATCACCAAAGAACTAGCCAT 58.375 45.455 0.00 0.00 0.00 4.40
3781 4007 3.379372 CCATCACCAAAGAACTAGCCATG 59.621 47.826 0.00 0.00 0.00 3.66
3782 4008 3.071874 TCACCAAAGAACTAGCCATGG 57.928 47.619 7.63 7.63 0.00 3.66
3783 4009 2.642311 TCACCAAAGAACTAGCCATGGA 59.358 45.455 18.40 0.00 0.00 3.41
3784 4010 2.749621 CACCAAAGAACTAGCCATGGAC 59.250 50.000 18.40 7.03 0.00 4.02
3785 4011 2.375174 ACCAAAGAACTAGCCATGGACA 59.625 45.455 18.40 0.00 0.00 4.02
3786 4012 3.012518 CCAAAGAACTAGCCATGGACAG 58.987 50.000 18.40 13.68 0.00 3.51
3787 4013 3.012518 CAAAGAACTAGCCATGGACAGG 58.987 50.000 18.40 4.37 0.00 4.00
3788 4014 2.254152 AGAACTAGCCATGGACAGGA 57.746 50.000 18.40 0.00 0.00 3.86
3789 4015 2.769209 AGAACTAGCCATGGACAGGAT 58.231 47.619 18.40 4.69 0.00 3.24
3790 4016 3.118531 AGAACTAGCCATGGACAGGATT 58.881 45.455 18.40 2.34 0.00 3.01
3791 4017 3.118112 AGAACTAGCCATGGACAGGATTG 60.118 47.826 18.40 0.00 0.00 2.67
3792 4018 1.133976 ACTAGCCATGGACAGGATTGC 60.134 52.381 18.40 0.00 0.00 3.56
3793 4019 0.918258 TAGCCATGGACAGGATTGCA 59.082 50.000 18.40 0.00 0.00 4.08
3794 4020 0.260816 AGCCATGGACAGGATTGCAT 59.739 50.000 18.40 0.00 0.00 3.96
3795 4021 0.387929 GCCATGGACAGGATTGCATG 59.612 55.000 18.40 0.00 0.00 4.06
3796 4022 1.037493 CCATGGACAGGATTGCATGG 58.963 55.000 5.56 8.96 38.07 3.66
3797 4023 1.410507 CCATGGACAGGATTGCATGGA 60.411 52.381 16.29 0.00 42.73 3.41
3798 4024 2.380941 CATGGACAGGATTGCATGGAA 58.619 47.619 0.79 0.79 0.00 3.53
3799 4025 2.133281 TGGACAGGATTGCATGGAAG 57.867 50.000 5.69 0.00 0.00 3.46
3800 4026 1.355381 TGGACAGGATTGCATGGAAGT 59.645 47.619 5.69 0.00 0.00 3.01
3801 4027 2.575735 TGGACAGGATTGCATGGAAGTA 59.424 45.455 5.69 0.00 0.00 2.24
3802 4028 3.209410 GGACAGGATTGCATGGAAGTAG 58.791 50.000 5.69 0.00 0.00 2.57
3803 4029 2.615912 GACAGGATTGCATGGAAGTAGC 59.384 50.000 5.69 0.00 0.00 3.58
3804 4030 2.240667 ACAGGATTGCATGGAAGTAGCT 59.759 45.455 5.69 0.00 0.00 3.32
3805 4031 3.455910 ACAGGATTGCATGGAAGTAGCTA 59.544 43.478 5.69 0.00 0.00 3.32
3806 4032 4.103785 ACAGGATTGCATGGAAGTAGCTAT 59.896 41.667 5.69 0.00 0.00 2.97
3807 4033 4.694509 CAGGATTGCATGGAAGTAGCTATC 59.305 45.833 5.69 0.00 38.95 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 93 3.329520 AGCACCACACTTACCATCCTTAA 59.670 43.478 0.00 0.00 0.00 1.85
92 94 2.910319 AGCACCACACTTACCATCCTTA 59.090 45.455 0.00 0.00 0.00 2.69
93 95 1.705186 AGCACCACACTTACCATCCTT 59.295 47.619 0.00 0.00 0.00 3.36
94 96 1.362224 AGCACCACACTTACCATCCT 58.638 50.000 0.00 0.00 0.00 3.24
101 103 4.217550 GGCATTTTCTTAGCACCACACTTA 59.782 41.667 0.00 0.00 0.00 2.24
121 123 1.137872 GTTGTCACCCACAAAATGGCA 59.862 47.619 0.00 0.00 46.90 4.92
123 125 2.692557 TGAGTTGTCACCCACAAAATGG 59.307 45.455 0.00 0.00 46.90 3.16
200 202 5.708736 AGTAATTGTATCCCCACATGACA 57.291 39.130 0.00 0.00 0.00 3.58
201 203 5.221048 GCAAGTAATTGTATCCCCACATGAC 60.221 44.000 0.00 0.00 0.00 3.06
218 220 8.654230 TTTTACATGAATTTTGCAGCAAGTAA 57.346 26.923 8.12 8.60 0.00 2.24
281 283 3.129638 GCTAATAATGGCCACACGGAAAA 59.870 43.478 8.16 0.00 0.00 2.29
285 287 1.674359 TGCTAATAATGGCCACACGG 58.326 50.000 8.16 0.00 30.79 4.94
305 313 9.677567 GTTATACTGCTCATTTTGTTTTCAAGA 57.322 29.630 0.00 0.00 41.09 3.02
438 451 4.487714 TTCGTCAAAAGATATGGAGGCT 57.512 40.909 0.00 0.00 0.00 4.58
439 452 4.023707 CCATTCGTCAAAAGATATGGAGGC 60.024 45.833 0.00 0.00 35.63 4.70
440 453 5.368145 TCCATTCGTCAAAAGATATGGAGG 58.632 41.667 0.00 0.00 37.28 4.30
441 454 7.358066 CAATCCATTCGTCAAAAGATATGGAG 58.642 38.462 0.00 0.00 43.25 3.86
442 455 6.262944 CCAATCCATTCGTCAAAAGATATGGA 59.737 38.462 0.00 0.00 43.90 3.41
445 458 6.364701 TCCCAATCCATTCGTCAAAAGATAT 58.635 36.000 0.00 0.00 0.00 1.63
446 459 5.750524 TCCCAATCCATTCGTCAAAAGATA 58.249 37.500 0.00 0.00 0.00 1.98
448 461 4.027674 TCCCAATCCATTCGTCAAAAGA 57.972 40.909 0.00 0.00 0.00 2.52
455 510 4.207165 CCTTGTAATCCCAATCCATTCGT 58.793 43.478 0.00 0.00 0.00 3.85
487 542 3.118920 TCGGCGATCTCCAACAAAAGATA 60.119 43.478 4.99 0.00 32.43 1.98
512 567 2.985282 CACCGCACTTGCCCATGT 60.985 61.111 0.00 0.00 37.91 3.21
535 690 4.095185 TGTCACCTTCGAAACGATGTTTTT 59.905 37.500 0.00 0.00 35.23 1.94
536 691 3.623960 TGTCACCTTCGAAACGATGTTTT 59.376 39.130 0.00 0.00 35.23 2.43
548 703 2.094390 TCTATTCCGGTTGTCACCTTCG 60.094 50.000 0.00 0.00 41.64 3.79
551 706 2.253610 TGTCTATTCCGGTTGTCACCT 58.746 47.619 0.00 0.00 41.64 4.00
559 714 6.001460 TGAAAACTTCATTGTCTATTCCGGT 58.999 36.000 0.00 0.00 34.08 5.28
580 735 9.823647 GAGTCTAGAGAAATGTATTTGGATGAA 57.176 33.333 0.00 0.00 0.00 2.57
584 739 7.406031 ACGAGTCTAGAGAAATGTATTTGGA 57.594 36.000 0.00 0.00 0.00 3.53
585 740 9.751542 AATACGAGTCTAGAGAAATGTATTTGG 57.248 33.333 0.00 0.00 29.87 3.28
607 762 7.856145 ACTCCTCACATGATTCTGAAAATAC 57.144 36.000 0.00 0.00 0.00 1.89
614 769 6.219417 AGTTCTACTCCTCACATGATTCTG 57.781 41.667 0.00 0.00 0.00 3.02
615 770 8.546083 AATAGTTCTACTCCTCACATGATTCT 57.454 34.615 0.00 0.00 0.00 2.40
616 771 8.417106 TGAATAGTTCTACTCCTCACATGATTC 58.583 37.037 0.00 0.00 0.00 2.52
617 772 8.200792 GTGAATAGTTCTACTCCTCACATGATT 58.799 37.037 0.00 0.00 38.65 2.57
618 773 7.201956 GGTGAATAGTTCTACTCCTCACATGAT 60.202 40.741 16.54 0.00 39.65 2.45
619 774 6.096987 GGTGAATAGTTCTACTCCTCACATGA 59.903 42.308 16.54 0.00 39.65 3.07
620 775 6.276847 GGTGAATAGTTCTACTCCTCACATG 58.723 44.000 16.54 0.00 39.65 3.21
621 776 5.067936 CGGTGAATAGTTCTACTCCTCACAT 59.932 44.000 16.54 0.00 39.65 3.21
622 777 4.398358 CGGTGAATAGTTCTACTCCTCACA 59.602 45.833 16.54 0.00 39.65 3.58
623 778 4.398673 ACGGTGAATAGTTCTACTCCTCAC 59.601 45.833 10.48 10.48 38.34 3.51
624 779 4.597004 ACGGTGAATAGTTCTACTCCTCA 58.403 43.478 0.00 0.00 0.00 3.86
684 844 5.702670 CACATGAAAAGGTGACTGTGTAGAT 59.297 40.000 0.00 0.00 42.68 1.98
686 846 4.214119 CCACATGAAAAGGTGACTGTGTAG 59.786 45.833 0.00 0.00 42.68 2.74
688 848 2.951642 CCACATGAAAAGGTGACTGTGT 59.048 45.455 0.00 0.00 42.68 3.72
689 849 2.951642 ACCACATGAAAAGGTGACTGTG 59.048 45.455 0.00 0.00 42.68 3.66
697 859 5.183713 TGCTGATAAAGACCACATGAAAAGG 59.816 40.000 0.00 0.00 0.00 3.11
746 909 9.710979 TGATAAATAAGCGTATAGTTTTTGTGC 57.289 29.630 0.00 0.00 0.00 4.57
761 924 9.058424 GTGTTCCGTAAGTTTTGATAAATAAGC 57.942 33.333 0.00 0.00 0.00 3.09
765 928 9.804758 TTTTGTGTTCCGTAAGTTTTGATAAAT 57.195 25.926 0.00 0.00 0.00 1.40
769 932 7.090953 TCTTTTGTGTTCCGTAAGTTTTGAT 57.909 32.000 0.00 0.00 0.00 2.57
776 939 4.731480 CGGTTTTCTTTTGTGTTCCGTAAG 59.269 41.667 0.00 0.00 33.39 2.34
780 944 3.408288 TCGGTTTTCTTTTGTGTTCCG 57.592 42.857 0.00 0.00 38.36 4.30
810 974 6.587226 ACTGTATACGAGTATTTGTTTCGCAA 59.413 34.615 0.73 0.00 37.84 4.85
811 975 6.094719 ACTGTATACGAGTATTTGTTTCGCA 58.905 36.000 0.73 0.00 37.84 5.10
812 976 6.564854 ACTGTATACGAGTATTTGTTTCGC 57.435 37.500 0.73 0.00 37.84 4.70
872 1036 1.076044 GGCTTACATGTGGGCCCAT 60.076 57.895 31.45 15.31 38.77 4.00
915 1109 2.158957 GCCCGGAGAAGATTACATCACA 60.159 50.000 0.73 0.00 0.00 3.58
916 1110 2.484889 GCCCGGAGAAGATTACATCAC 58.515 52.381 0.73 0.00 0.00 3.06
917 1111 1.068588 CGCCCGGAGAAGATTACATCA 59.931 52.381 0.73 0.00 0.00 3.07
918 1112 1.340248 TCGCCCGGAGAAGATTACATC 59.660 52.381 0.73 0.00 0.00 3.06
919 1113 1.068741 GTCGCCCGGAGAAGATTACAT 59.931 52.381 0.73 0.00 0.00 2.29
935 1129 2.179517 CACTCTCCACCTCGTCGC 59.820 66.667 0.00 0.00 0.00 5.19
944 1138 0.894184 GTGGGTCGTCTCACTCTCCA 60.894 60.000 5.36 0.00 0.00 3.86
945 1139 0.609681 AGTGGGTCGTCTCACTCTCC 60.610 60.000 9.52 0.00 39.77 3.71
946 1140 2.949826 AGTGGGTCGTCTCACTCTC 58.050 57.895 9.52 0.00 39.77 3.20
959 1153 4.463879 CCTCTGGCTGCGAGTGGG 62.464 72.222 20.71 15.31 0.00 4.61
1050 1244 4.162690 GACGGCGGGCTCTTGGAT 62.163 66.667 13.24 0.00 0.00 3.41
1171 1365 1.979155 TGAGGAGCCTGGTGACGAG 60.979 63.158 0.00 0.00 0.00 4.18
1548 1751 2.390599 CCTGCCGAACATCACGTGG 61.391 63.158 17.00 2.57 0.00 4.94
1553 1756 2.359850 GCACCCTGCCGAACATCA 60.360 61.111 0.00 0.00 37.42 3.07
1693 1896 1.301716 GCACACTGGTCACCGTGAT 60.302 57.895 21.08 6.86 34.20 3.06
1695 1898 1.956170 GAGCACACTGGTCACCGTG 60.956 63.158 14.84 14.84 43.79 4.94
1699 1902 1.373497 CCGAGAGCACACTGGTCAC 60.373 63.158 4.39 0.00 46.52 3.67
1728 1931 3.715097 AGCTCCAGTGCTCCCAGC 61.715 66.667 0.00 0.00 39.34 4.85
1738 1941 3.406200 CCACCTCCCCAGCTCCAG 61.406 72.222 0.00 0.00 0.00 3.86
1791 1994 2.288666 GCAGTGTTGACCTTCACAAGA 58.711 47.619 0.00 0.00 37.07 3.02
1794 1997 1.436195 GCGCAGTGTTGACCTTCACA 61.436 55.000 0.30 0.00 37.07 3.58
1953 2156 4.241681 GCTTCTTCATCTCTTCGAACAGT 58.758 43.478 0.00 0.00 0.00 3.55
1995 2198 1.090052 GCACGCCTAGGAATGTGACC 61.090 60.000 24.92 10.56 34.29 4.02
1998 2201 0.176680 AGAGCACGCCTAGGAATGTG 59.823 55.000 14.75 17.74 35.48 3.21
2088 2291 4.141390 CCATAGTGCTTTATCCCAGGAACT 60.141 45.833 0.00 0.00 43.88 3.01
2109 2312 0.310543 GCAAATCAGTCACGCAACCA 59.689 50.000 0.00 0.00 0.00 3.67
2315 2518 0.237235 GTTGGCGCACAAATTCGAGA 59.763 50.000 10.83 0.00 41.58 4.04
2322 2525 2.780094 CCCAGTGTTGGCGCACAAA 61.780 57.895 10.83 0.00 43.58 2.83
2390 2593 2.040544 CAGCCAGGCACCTTTACCG 61.041 63.158 15.80 0.00 0.00 4.02
2471 2674 1.753930 TCGGCATGCATCTTGTGATT 58.246 45.000 21.36 0.00 0.00 2.57
2472 2675 1.753930 TTCGGCATGCATCTTGTGAT 58.246 45.000 21.36 0.00 0.00 3.06
2473 2676 1.402613 CATTCGGCATGCATCTTGTGA 59.597 47.619 21.36 2.19 0.00 3.58
2474 2677 1.535226 CCATTCGGCATGCATCTTGTG 60.535 52.381 21.36 9.72 0.00 3.33
2475 2678 0.742505 CCATTCGGCATGCATCTTGT 59.257 50.000 21.36 0.00 0.00 3.16
2476 2679 0.742505 ACCATTCGGCATGCATCTTG 59.257 50.000 21.36 11.12 34.57 3.02
2477 2680 1.135527 CAACCATTCGGCATGCATCTT 59.864 47.619 21.36 0.00 34.57 2.40
2478 2681 0.742505 CAACCATTCGGCATGCATCT 59.257 50.000 21.36 0.00 34.57 2.90
2479 2682 0.740149 TCAACCATTCGGCATGCATC 59.260 50.000 21.36 1.35 34.57 3.91
2485 2688 1.811965 CACTTCATCAACCATTCGGCA 59.188 47.619 0.00 0.00 34.57 5.69
2517 2720 6.642707 TTAGGGACATAACCAACAAGTTTG 57.357 37.500 0.00 0.00 0.00 2.93
2547 2750 4.081406 CCATTTGAACATGGAAGACCTGA 58.919 43.478 0.00 0.00 46.18 3.86
2563 2766 2.356535 CCTTCTCCTCCTCACCCATTTG 60.357 54.545 0.00 0.00 0.00 2.32
2604 2807 2.497675 AGAAATCGCCAGCTTCTCACTA 59.502 45.455 0.00 0.00 0.00 2.74
2635 2838 6.497259 AGAGTAGTTCCTGGAGATGTGTTTAA 59.503 38.462 0.00 0.00 0.00 1.52
2640 2843 3.383185 GGAGAGTAGTTCCTGGAGATGTG 59.617 52.174 0.00 0.00 0.00 3.21
2819 3022 5.895889 GCATCGTGAAACAAAAATTGTGTTC 59.104 36.000 1.54 6.11 44.59 3.18
2839 3042 4.142071 TGGACACAACAGAGATAGAGCATC 60.142 45.833 0.00 0.00 0.00 3.91
2850 3053 3.554129 CGTACCTGAATGGACACAACAGA 60.554 47.826 0.00 0.00 37.30 3.41
2871 3074 3.187227 GGCATGCATATAGAAGTTGACCG 59.813 47.826 21.36 0.00 0.00 4.79
2881 3084 6.260714 TGTCAGTTAGTTTGGCATGCATATAG 59.739 38.462 21.36 0.00 0.00 1.31
2974 3177 5.518847 CACGGGTATGACTAAACAGTACATG 59.481 44.000 0.00 0.00 0.00 3.21
3104 3307 7.923414 ATTTACAAGAATGTAGGAGGTTGTC 57.077 36.000 0.00 0.00 42.72 3.18
3179 3384 3.054875 ACCTCACAGTATGATGCACATGT 60.055 43.478 10.77 0.00 39.69 3.21
3297 3510 7.561722 TCAGGACTGTTACAGCTAATAGAGAAT 59.438 37.037 12.80 0.00 34.37 2.40
3361 3580 6.216569 TCAAGCTCCATCGAAACAGTATATC 58.783 40.000 0.00 0.00 0.00 1.63
3374 3593 2.887152 ACAACCAAGTTCAAGCTCCATC 59.113 45.455 0.00 0.00 0.00 3.51
3379 3598 2.158871 TCGGTACAACCAAGTTCAAGCT 60.159 45.455 0.00 0.00 38.47 3.74
3415 3634 9.778741 AGTGTTATACATCTTTCTGTTGAGAAA 57.221 29.630 0.00 0.00 44.40 2.52
3423 3642 7.521529 CACCACAAGTGTTATACATCTTTCTG 58.478 38.462 0.00 0.00 41.93 3.02
3424 3643 7.672983 CACCACAAGTGTTATACATCTTTCT 57.327 36.000 0.00 0.00 41.93 2.52
3591 3817 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
3592 3818 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
3593 3819 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
3594 3820 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
3595 3821 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
3596 3822 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
3597 3823 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
3603 3829 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
3604 3830 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
3605 3831 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
3606 3832 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
3607 3833 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
3608 3834 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
3609 3835 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
3620 3846 2.528818 CCCAGGACCTCTTGGCACA 61.529 63.158 0.00 0.00 41.31 4.57
3621 3847 2.069165 AACCCAGGACCTCTTGGCAC 62.069 60.000 0.00 0.00 41.31 5.01
3622 3848 1.774217 AACCCAGGACCTCTTGGCA 60.774 57.895 0.00 0.00 41.31 4.92
3623 3849 1.002011 GAACCCAGGACCTCTTGGC 60.002 63.158 0.00 0.00 41.31 4.52
3624 3850 1.192146 TCGAACCCAGGACCTCTTGG 61.192 60.000 0.00 0.00 42.20 3.61
3625 3851 0.685097 TTCGAACCCAGGACCTCTTG 59.315 55.000 0.00 0.00 0.00 3.02
3626 3852 0.685660 GTTCGAACCCAGGACCTCTT 59.314 55.000 17.68 0.00 0.00 2.85
3627 3853 1.192803 GGTTCGAACCCAGGACCTCT 61.193 60.000 33.02 0.00 43.43 3.69
3628 3854 1.295746 GGTTCGAACCCAGGACCTC 59.704 63.158 33.02 7.79 43.43 3.85
3629 3855 3.479979 GGTTCGAACCCAGGACCT 58.520 61.111 33.02 0.00 43.43 3.85
3638 3864 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
3639 3865 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
3640 3866 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
3641 3867 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
3642 3868 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
3643 3869 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
3644 3870 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
3645 3871 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
3647 3873 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
3648 3874 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
3649 3875 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
3650 3876 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
3661 3887 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
3662 3888 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
3663 3889 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
3664 3890 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
3665 3891 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
3666 3892 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
3667 3893 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
3668 3894 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
3669 3895 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
3670 3896 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
3671 3897 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
3672 3898 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
3673 3899 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
3674 3900 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
3675 3901 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
3676 3902 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
3677 3903 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
3678 3904 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
3679 3905 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
3680 3906 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
3681 3907 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
3682 3908 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
3683 3909 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
3684 3910 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
3685 3911 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
3686 3912 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
3687 3913 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
3688 3914 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
3689 3915 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
3690 3916 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
3691 3917 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
3692 3918 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
3693 3919 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
3694 3920 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
3696 3922 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
3697 3923 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
3698 3924 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
3699 3925 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
3700 3926 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
3701 3927 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
3702 3928 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
3710 3936 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
3711 3937 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
3712 3938 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
3713 3939 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
3714 3940 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
3715 3941 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
3716 3942 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
3717 3943 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
3718 3944 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
3719 3945 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
3720 3946 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
3721 3947 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
3722 3948 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
3723 3949 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
3724 3950 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
3725 3951 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
3726 3952 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
3727 3953 1.134580 CAGGACAGACCCAGTGCATAG 60.135 57.143 0.00 0.00 40.05 2.23
3728 3954 0.904649 CAGGACAGACCCAGTGCATA 59.095 55.000 0.00 0.00 40.05 3.14
3729 3955 0.837691 TCAGGACAGACCCAGTGCAT 60.838 55.000 0.00 0.00 40.05 3.96
3730 3956 1.053835 TTCAGGACAGACCCAGTGCA 61.054 55.000 0.00 0.00 40.05 4.57
3731 3957 0.326264 ATTCAGGACAGACCCAGTGC 59.674 55.000 0.00 0.00 40.05 4.40
3732 3958 1.947678 GCATTCAGGACAGACCCAGTG 60.948 57.143 0.00 0.00 40.05 3.66
3733 3959 0.326264 GCATTCAGGACAGACCCAGT 59.674 55.000 0.00 0.00 40.05 4.00
3734 3960 0.325933 TGCATTCAGGACAGACCCAG 59.674 55.000 0.00 0.00 40.05 4.45
3735 3961 0.770499 TTGCATTCAGGACAGACCCA 59.230 50.000 0.00 0.00 40.05 4.51
3736 3962 2.134789 ATTGCATTCAGGACAGACCC 57.865 50.000 0.00 0.00 40.05 4.46
3737 3963 2.424956 GGAATTGCATTCAGGACAGACC 59.575 50.000 9.92 0.00 41.03 3.85
3738 3964 2.424956 GGGAATTGCATTCAGGACAGAC 59.575 50.000 0.00 0.00 41.03 3.51
3739 3965 2.621407 GGGGAATTGCATTCAGGACAGA 60.621 50.000 0.00 0.00 41.03 3.41
3740 3966 1.753073 GGGGAATTGCATTCAGGACAG 59.247 52.381 0.00 0.00 41.03 3.51
3741 3967 1.076841 TGGGGAATTGCATTCAGGACA 59.923 47.619 0.00 2.59 41.03 4.02
3742 3968 1.851304 TGGGGAATTGCATTCAGGAC 58.149 50.000 0.00 0.70 41.03 3.85
3743 3969 2.024177 TGATGGGGAATTGCATTCAGGA 60.024 45.455 0.00 0.00 41.03 3.86
3744 3970 2.101917 GTGATGGGGAATTGCATTCAGG 59.898 50.000 0.00 0.00 41.03 3.86
3745 3971 2.101917 GGTGATGGGGAATTGCATTCAG 59.898 50.000 0.00 0.00 41.03 3.02
3746 3972 2.109774 GGTGATGGGGAATTGCATTCA 58.890 47.619 0.00 0.00 41.03 2.57
3747 3973 2.109774 TGGTGATGGGGAATTGCATTC 58.890 47.619 0.00 0.00 38.55 2.67
3748 3974 2.250921 TGGTGATGGGGAATTGCATT 57.749 45.000 0.00 0.00 0.00 3.56
3749 3975 2.250921 TTGGTGATGGGGAATTGCAT 57.749 45.000 0.00 0.00 0.00 3.96
3750 3976 1.901159 CTTTGGTGATGGGGAATTGCA 59.099 47.619 0.00 0.00 0.00 4.08
3751 3977 2.178580 TCTTTGGTGATGGGGAATTGC 58.821 47.619 0.00 0.00 0.00 3.56
3752 3978 3.834231 AGTTCTTTGGTGATGGGGAATTG 59.166 43.478 0.00 0.00 0.00 2.32
3753 3979 4.132122 AGTTCTTTGGTGATGGGGAATT 57.868 40.909 0.00 0.00 0.00 2.17
3754 3980 3.833559 AGTTCTTTGGTGATGGGGAAT 57.166 42.857 0.00 0.00 0.00 3.01
3755 3981 3.561313 GCTAGTTCTTTGGTGATGGGGAA 60.561 47.826 0.00 0.00 0.00 3.97
3756 3982 2.026262 GCTAGTTCTTTGGTGATGGGGA 60.026 50.000 0.00 0.00 0.00 4.81
3757 3983 2.369394 GCTAGTTCTTTGGTGATGGGG 58.631 52.381 0.00 0.00 0.00 4.96
3758 3984 2.290896 TGGCTAGTTCTTTGGTGATGGG 60.291 50.000 0.00 0.00 0.00 4.00
3759 3985 3.071874 TGGCTAGTTCTTTGGTGATGG 57.928 47.619 0.00 0.00 0.00 3.51
3760 3986 3.379372 CCATGGCTAGTTCTTTGGTGATG 59.621 47.826 0.00 0.00 0.00 3.07
3761 3987 3.266772 TCCATGGCTAGTTCTTTGGTGAT 59.733 43.478 6.96 0.00 0.00 3.06
3762 3988 2.642311 TCCATGGCTAGTTCTTTGGTGA 59.358 45.455 6.96 0.00 0.00 4.02
3763 3989 2.749621 GTCCATGGCTAGTTCTTTGGTG 59.250 50.000 6.96 0.00 0.00 4.17
3764 3990 2.375174 TGTCCATGGCTAGTTCTTTGGT 59.625 45.455 6.96 0.00 0.00 3.67
3765 3991 3.012518 CTGTCCATGGCTAGTTCTTTGG 58.987 50.000 6.96 0.00 0.00 3.28
3766 3992 3.012518 CCTGTCCATGGCTAGTTCTTTG 58.987 50.000 6.96 0.00 0.00 2.77
3767 3993 2.912956 TCCTGTCCATGGCTAGTTCTTT 59.087 45.455 6.96 0.00 0.00 2.52
3768 3994 2.551270 TCCTGTCCATGGCTAGTTCTT 58.449 47.619 6.96 0.00 0.00 2.52
3769 3995 2.254152 TCCTGTCCATGGCTAGTTCT 57.746 50.000 6.96 0.00 0.00 3.01
3770 3996 3.209410 CAATCCTGTCCATGGCTAGTTC 58.791 50.000 6.96 0.00 0.00 3.01
3771 3997 2.684927 GCAATCCTGTCCATGGCTAGTT 60.685 50.000 6.96 0.00 0.00 2.24
3772 3998 1.133976 GCAATCCTGTCCATGGCTAGT 60.134 52.381 6.96 0.00 0.00 2.57
3773 3999 1.134007 TGCAATCCTGTCCATGGCTAG 60.134 52.381 6.96 7.49 0.00 3.42
3774 4000 0.918258 TGCAATCCTGTCCATGGCTA 59.082 50.000 6.96 0.00 0.00 3.93
3775 4001 0.260816 ATGCAATCCTGTCCATGGCT 59.739 50.000 6.96 0.00 0.00 4.75
3776 4002 0.387929 CATGCAATCCTGTCCATGGC 59.612 55.000 6.96 2.72 33.28 4.40
3777 4003 1.037493 CCATGCAATCCTGTCCATGG 58.963 55.000 4.97 4.97 45.96 3.66
3778 4004 2.061509 TCCATGCAATCCTGTCCATG 57.938 50.000 0.00 0.00 35.90 3.66
3779 4005 2.024655 ACTTCCATGCAATCCTGTCCAT 60.025 45.455 0.00 0.00 0.00 3.41
3780 4006 1.355381 ACTTCCATGCAATCCTGTCCA 59.645 47.619 0.00 0.00 0.00 4.02
3781 4007 2.134789 ACTTCCATGCAATCCTGTCC 57.865 50.000 0.00 0.00 0.00 4.02
3782 4008 2.615912 GCTACTTCCATGCAATCCTGTC 59.384 50.000 0.00 0.00 0.00 3.51
3783 4009 2.240667 AGCTACTTCCATGCAATCCTGT 59.759 45.455 0.00 0.00 0.00 4.00
3784 4010 2.928334 AGCTACTTCCATGCAATCCTG 58.072 47.619 0.00 0.00 0.00 3.86
3785 4011 4.263243 GGATAGCTACTTCCATGCAATCCT 60.263 45.833 8.29 0.00 31.99 3.24
3786 4012 4.006319 GGATAGCTACTTCCATGCAATCC 58.994 47.826 8.29 0.00 31.99 3.01
3787 4013 4.453819 GTGGATAGCTACTTCCATGCAATC 59.546 45.833 17.16 2.43 43.61 2.67
3788 4014 4.392940 GTGGATAGCTACTTCCATGCAAT 58.607 43.478 17.16 0.00 43.61 3.56
3789 4015 3.741075 CGTGGATAGCTACTTCCATGCAA 60.741 47.826 18.38 0.00 43.61 4.08
3790 4016 2.224042 CGTGGATAGCTACTTCCATGCA 60.224 50.000 18.38 2.79 43.61 3.96
3791 4017 2.408050 CGTGGATAGCTACTTCCATGC 58.592 52.381 18.38 7.87 43.61 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.