Multiple sequence alignment - TraesCS5A01G435300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G435300 chr5A 100.000 3068 0 0 1 3068 618601741 618604808 0.000000e+00 5666.0
1 TraesCS5A01G435300 chr5A 84.084 1244 175 15 855 2080 618270423 618271661 0.000000e+00 1179.0
2 TraesCS5A01G435300 chr5A 85.264 889 126 4 1159 2043 618430317 618431204 0.000000e+00 911.0
3 TraesCS5A01G435300 chr5A 81.096 1095 190 13 984 2077 618273220 618274298 0.000000e+00 859.0
4 TraesCS5A01G435300 chr5A 80.553 1121 182 15 976 2082 618125855 618126953 0.000000e+00 830.0
5 TraesCS5A01G435300 chr5A 87.633 283 21 2 2312 2580 621756472 621756754 1.780000e-82 316.0
6 TraesCS5A01G435300 chr5A 91.613 155 12 1 614 768 618486044 618486197 2.400000e-51 213.0
7 TraesCS5A01G435300 chr5A 91.071 56 3 1 2728 2783 490418635 490418582 1.180000e-09 75.0
8 TraesCS5A01G435300 chr5D 92.685 2980 106 32 1 2919 494760808 494763736 0.000000e+00 4193.0
9 TraesCS5A01G435300 chr5D 82.349 1507 206 34 615 2080 494684383 494685870 0.000000e+00 1254.0
10 TraesCS5A01G435300 chr5D 81.719 1105 183 16 984 2077 494654379 494655475 0.000000e+00 904.0
11 TraesCS5A01G435300 chr5D 86.667 285 24 2 2310 2580 497778989 497779273 1.380000e-78 303.0
12 TraesCS5A01G435300 chr5D 91.824 159 12 1 610 768 494713400 494713557 1.430000e-53 220.0
13 TraesCS5A01G435300 chr5D 77.097 310 48 14 2287 2587 494775150 494775445 1.140000e-34 158.0
14 TraesCS5A01G435300 chr5D 92.453 53 2 1 2729 2781 109571778 109571728 1.180000e-09 75.0
15 TraesCS5A01G435300 chr5D 91.071 56 3 1 2728 2783 387692564 387692511 1.180000e-09 75.0
16 TraesCS5A01G435300 chr5B 94.413 1611 61 5 610 2197 611322724 611324328 0.000000e+00 2449.0
17 TraesCS5A01G435300 chr5B 84.037 1303 180 17 785 2080 610922763 610924044 0.000000e+00 1229.0
18 TraesCS5A01G435300 chr5B 83.814 1075 159 12 985 2053 610965571 610966636 0.000000e+00 1007.0
19 TraesCS5A01G435300 chr5B 79.233 1382 228 45 711 2075 610873824 610875163 0.000000e+00 907.0
20 TraesCS5A01G435300 chr5B 80.450 1156 180 24 615 1761 610958001 610959119 0.000000e+00 841.0
21 TraesCS5A01G435300 chr5B 83.103 870 142 3 1212 2077 610876840 610877708 0.000000e+00 787.0
22 TraesCS5A01G435300 chr5B 89.983 589 34 8 2287 2852 611326126 611326712 0.000000e+00 737.0
23 TraesCS5A01G435300 chr5B 91.087 460 38 3 29 485 611321917 611322376 1.210000e-173 619.0
24 TraesCS5A01G435300 chr5B 87.719 285 21 2 2310 2580 616649301 616649585 1.370000e-83 320.0
25 TraesCS5A01G435300 chr5B 85.625 160 19 4 610 768 611183986 611184142 6.810000e-37 165.0
26 TraesCS5A01G435300 chr5B 94.203 69 4 0 482 550 611322632 611322700 4.180000e-19 106.0
27 TraesCS5A01G435300 chr5B 92.727 55 1 1 2195 2249 611326003 611326054 3.280000e-10 76.8
28 TraesCS5A01G435300 chr5B 92.453 53 2 1 2729 2781 18678529 18678579 1.180000e-09 75.0
29 TraesCS5A01G435300 chr3D 92.857 56 2 1 2727 2782 153503500 153503447 2.540000e-11 80.5
30 TraesCS5A01G435300 chr7D 92.453 53 2 1 2729 2781 629032574 629032624 1.180000e-09 75.0
31 TraesCS5A01G435300 chr2B 91.071 56 3 1 2727 2782 405272988 405273041 1.180000e-09 75.0
32 TraesCS5A01G435300 chr2B 93.478 46 3 0 2922 2967 148400050 148400095 5.490000e-08 69.4
33 TraesCS5A01G435300 chrUn 93.617 47 2 1 2922 2967 96234302 96234256 5.490000e-08 69.4
34 TraesCS5A01G435300 chrUn 93.333 45 3 0 2923 2967 29996627 29996583 1.970000e-07 67.6
35 TraesCS5A01G435300 chr2A 93.478 46 2 1 2923 2967 24117362 24117317 1.970000e-07 67.6
36 TraesCS5A01G435300 chr7A 92.857 42 2 1 2928 2968 125260886 125260845 3.300000e-05 60.2
37 TraesCS5A01G435300 chr6B 100.000 31 0 0 2937 2967 335821505 335821535 1.190000e-04 58.4
38 TraesCS5A01G435300 chr6D 96.875 32 1 0 2936 2967 147123180 147123211 2.000000e-03 54.7
39 TraesCS5A01G435300 chr3B 100.000 28 0 0 2940 2967 659457747 659457720 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G435300 chr5A 618601741 618604808 3067 False 5666.00 5666 100.0000 1 3068 1 chr5A.!!$F4 3067
1 TraesCS5A01G435300 chr5A 618270423 618274298 3875 False 1019.00 1179 82.5900 855 2080 2 chr5A.!!$F6 1225
2 TraesCS5A01G435300 chr5A 618430317 618431204 887 False 911.00 911 85.2640 1159 2043 1 chr5A.!!$F2 884
3 TraesCS5A01G435300 chr5A 618125855 618126953 1098 False 830.00 830 80.5530 976 2082 1 chr5A.!!$F1 1106
4 TraesCS5A01G435300 chr5D 494760808 494763736 2928 False 4193.00 4193 92.6850 1 2919 1 chr5D.!!$F4 2918
5 TraesCS5A01G435300 chr5D 494684383 494685870 1487 False 1254.00 1254 82.3490 615 2080 1 chr5D.!!$F2 1465
6 TraesCS5A01G435300 chr5D 494654379 494655475 1096 False 904.00 904 81.7190 984 2077 1 chr5D.!!$F1 1093
7 TraesCS5A01G435300 chr5B 610922763 610924044 1281 False 1229.00 1229 84.0370 785 2080 1 chr5B.!!$F2 1295
8 TraesCS5A01G435300 chr5B 610965571 610966636 1065 False 1007.00 1007 83.8140 985 2053 1 chr5B.!!$F4 1068
9 TraesCS5A01G435300 chr5B 610873824 610877708 3884 False 847.00 907 81.1680 711 2077 2 chr5B.!!$F7 1366
10 TraesCS5A01G435300 chr5B 610958001 610959119 1118 False 841.00 841 80.4500 615 1761 1 chr5B.!!$F3 1146
11 TraesCS5A01G435300 chr5B 611321917 611326712 4795 False 797.56 2449 92.4826 29 2852 5 chr5B.!!$F8 2823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 472 0.034337 TAAAGACCCCACGTGTCAGC 59.966 55.0 15.65 1.14 35.15 4.26 F
1042 1395 0.179037 TGCTGCCATGGTATCTGAGC 60.179 55.0 14.67 8.84 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 4304 0.530211 CGCTCCAGATCAGCCTTCTG 60.530 60.0 0.0 2.06 40.25 3.02 R
2966 7739 0.034059 CCCTCAACAGCACGAGAAGT 59.966 55.0 0.0 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.492484 GTGATCTACCACTCAACCTCGT 59.508 50.000 0.00 0.00 34.38 4.18
27 28 3.056749 GTGATCTACCACTCAACCTCGTT 60.057 47.826 0.00 0.00 34.38 3.85
88 89 2.032528 CCGCCAGTTGAGAAGCCA 59.967 61.111 0.00 0.00 0.00 4.75
145 146 2.603776 GAGAGGGTGACGGGGTGT 60.604 66.667 0.00 0.00 0.00 4.16
210 213 3.760035 GGCGCGAGAGTGAAGGGA 61.760 66.667 12.10 0.00 46.66 4.20
212 215 1.374252 GCGCGAGAGTGAAGGGAAA 60.374 57.895 12.10 0.00 46.66 3.13
223 226 2.444700 GAAGGGAAAGGGCACGACGA 62.445 60.000 0.00 0.00 0.00 4.20
237 240 1.872313 ACGACGAGTATAGTGGCTAGC 59.128 52.381 6.04 6.04 0.00 3.42
291 294 4.100084 CAGCCCAGCCATCCACGA 62.100 66.667 0.00 0.00 0.00 4.35
415 419 1.372683 CCACACCCACACTCAGAGG 59.627 63.158 1.53 0.00 0.00 3.69
452 456 1.337823 CCACAGACTAAAGACCCCACG 60.338 57.143 0.00 0.00 0.00 4.94
459 472 0.034337 TAAAGACCCCACGTGTCAGC 59.966 55.000 15.65 1.14 35.15 4.26
460 473 2.676163 AAAGACCCCACGTGTCAGCC 62.676 60.000 15.65 0.00 35.15 4.85
461 474 3.936203 GACCCCACGTGTCAGCCA 61.936 66.667 15.65 0.00 32.91 4.75
462 475 3.883744 GACCCCACGTGTCAGCCAG 62.884 68.421 15.65 0.00 32.91 4.85
463 476 3.625897 CCCCACGTGTCAGCCAGA 61.626 66.667 15.65 0.00 0.00 3.86
464 477 2.665000 CCCACGTGTCAGCCAGAT 59.335 61.111 15.65 0.00 0.00 2.90
465 478 1.613317 CCCCACGTGTCAGCCAGATA 61.613 60.000 15.65 0.00 0.00 1.98
466 479 0.460284 CCCACGTGTCAGCCAGATAC 60.460 60.000 15.65 0.00 35.25 2.24
533 805 3.119137 TGTCACATCGAAGTTGATCCGAT 60.119 43.478 0.00 0.00 42.88 4.18
540 812 0.749454 AAGTTGATCCGATGGCCAGC 60.749 55.000 12.07 12.07 0.00 4.85
551 823 0.689745 ATGGCCAGCATTGCTCCATT 60.690 50.000 20.66 9.50 36.40 3.16
600 872 1.469308 GACAGACAATCCGACGACTCT 59.531 52.381 0.00 0.00 0.00 3.24
820 1134 0.179936 GAGCTCCACCTCCTCCATTG 59.820 60.000 0.87 0.00 0.00 2.82
881 1197 3.861797 CCAATCCCTAGCGCCGGT 61.862 66.667 2.29 0.00 0.00 5.28
1042 1395 0.179037 TGCTGCCATGGTATCTGAGC 60.179 55.000 14.67 8.84 0.00 4.26
1046 1399 2.617308 CTGCCATGGTATCTGAGCAAAG 59.383 50.000 14.67 0.00 39.49 2.77
1047 1400 1.952296 GCCATGGTATCTGAGCAAAGG 59.048 52.381 14.67 0.00 39.49 3.11
1048 1401 2.684927 GCCATGGTATCTGAGCAAAGGT 60.685 50.000 14.67 0.00 39.49 3.50
1049 1402 3.209410 CCATGGTATCTGAGCAAAGGTC 58.791 50.000 2.57 0.00 39.49 3.85
1050 1403 3.370846 CCATGGTATCTGAGCAAAGGTCA 60.371 47.826 2.57 0.00 39.49 4.02
1051 1404 4.458397 CATGGTATCTGAGCAAAGGTCAT 58.542 43.478 0.00 0.00 39.36 3.06
1052 1405 5.455183 CCATGGTATCTGAGCAAAGGTCATA 60.455 44.000 2.57 0.00 39.36 2.15
1053 1406 5.894298 TGGTATCTGAGCAAAGGTCATAT 57.106 39.130 0.00 1.41 39.36 1.78
1054 1407 5.614308 TGGTATCTGAGCAAAGGTCATATG 58.386 41.667 0.00 0.00 39.36 1.78
1055 1408 4.453819 GGTATCTGAGCAAAGGTCATATGC 59.546 45.833 0.00 5.96 39.36 3.14
1056 1409 2.554142 TCTGAGCAAAGGTCATATGCG 58.446 47.619 0.00 0.00 44.60 4.73
1057 1410 1.003116 CTGAGCAAAGGTCATATGCGC 60.003 52.381 0.00 0.00 44.60 6.09
1157 1536 1.978455 TTCAGTGTTGGAGGGCACGT 61.978 55.000 0.00 0.00 40.26 4.49
1221 4140 5.774690 TCATGCCCATTACATATCCCTTTTC 59.225 40.000 0.00 0.00 0.00 2.29
1259 4181 1.211212 TGATGCTGGAGATGTGAAGGG 59.789 52.381 0.00 0.00 0.00 3.95
1378 4304 2.119495 TGGGCTATCCTGACTTCTTCC 58.881 52.381 0.00 0.00 36.20 3.46
1593 4530 4.724602 TGTGTCCTCGCTGCTCGC 62.725 66.667 0.00 0.00 38.27 5.03
2170 5125 4.637534 ACAAAAATGCTGCTATCGATCACT 59.362 37.500 0.00 0.00 0.00 3.41
2255 6906 5.679734 TGTTTCAGAACAAAGATGAGAGC 57.320 39.130 0.00 0.00 42.54 4.09
2269 6920 7.731882 AAGATGAGAGCAGTATCATTCATTG 57.268 36.000 0.00 0.00 34.67 2.82
2270 6921 6.231951 AGATGAGAGCAGTATCATTCATTGG 58.768 40.000 0.00 0.00 34.67 3.16
2271 6922 5.363562 TGAGAGCAGTATCATTCATTGGT 57.636 39.130 0.00 0.00 0.00 3.67
2272 6923 6.484364 TGAGAGCAGTATCATTCATTGGTA 57.516 37.500 0.00 0.00 0.00 3.25
2273 6924 6.519382 TGAGAGCAGTATCATTCATTGGTAG 58.481 40.000 0.00 0.00 0.00 3.18
2274 6925 6.324770 TGAGAGCAGTATCATTCATTGGTAGA 59.675 38.462 0.00 0.00 0.00 2.59
2277 6928 7.877097 AGAGCAGTATCATTCATTGGTAGAATC 59.123 37.037 0.00 0.00 33.64 2.52
2278 6929 7.512130 AGCAGTATCATTCATTGGTAGAATCA 58.488 34.615 0.00 0.00 33.64 2.57
2431 7118 9.339492 CTTCAGATTCTTGAAGCTTTGAATAAC 57.661 33.333 17.33 10.14 45.21 1.89
2497 7184 3.189287 AGGCTATTCTTGAACGCTGTTTG 59.811 43.478 0.00 0.00 0.00 2.93
2507 7194 3.249799 TGAACGCTGTTTGAAGGTGTATG 59.750 43.478 0.00 0.00 0.00 2.39
2529 7216 2.716969 AGGAAAAACTGGAGGGCTTAGT 59.283 45.455 0.00 0.00 0.00 2.24
2541 7228 2.772515 AGGGCTTAGTTCCACCTGTATC 59.227 50.000 0.00 0.00 0.00 2.24
2549 7236 2.359981 TCCACCTGTATCGGTAGAGG 57.640 55.000 17.06 17.06 44.80 3.69
2619 7306 4.815308 CCTCCAGCAAATAGAATCAGTCAG 59.185 45.833 0.00 0.00 0.00 3.51
2629 7316 4.669206 AGAATCAGTCAGCTCTGGTATG 57.331 45.455 2.82 0.00 36.25 2.39
2630 7317 4.029520 AGAATCAGTCAGCTCTGGTATGT 58.970 43.478 2.82 0.00 36.25 2.29
2631 7318 4.099266 AGAATCAGTCAGCTCTGGTATGTC 59.901 45.833 2.82 0.00 36.25 3.06
2633 7320 2.106566 CAGTCAGCTCTGGTATGTCCT 58.893 52.381 0.00 0.00 37.07 3.85
2635 7322 2.499289 AGTCAGCTCTGGTATGTCCTTG 59.501 50.000 0.00 0.00 37.07 3.61
2721 7415 3.134081 CCGTCTATGTGGACCTTGGTATT 59.866 47.826 0.00 0.00 33.07 1.89
2722 7416 4.119862 CGTCTATGTGGACCTTGGTATTG 58.880 47.826 0.00 0.00 33.07 1.90
2725 7419 6.628621 CGTCTATGTGGACCTTGGTATTGTTA 60.629 42.308 0.00 0.00 33.07 2.41
2728 7422 8.333235 TCTATGTGGACCTTGGTATTGTTATTT 58.667 33.333 0.00 0.00 0.00 1.40
2757 7451 3.149038 GGATTACCCCGGCCTCTC 58.851 66.667 0.00 0.00 0.00 3.20
2809 7503 4.694037 GGACCTTGGTATCTTGTGTTGTAC 59.306 45.833 0.00 0.00 0.00 2.90
2819 7513 8.493547 GGTATCTTGTGTTGTACTTCAGTTTAC 58.506 37.037 0.00 0.00 0.00 2.01
2820 7514 9.257651 GTATCTTGTGTTGTACTTCAGTTTACT 57.742 33.333 0.00 0.00 0.00 2.24
2853 7587 5.854431 AAAAACAAAAACGTCTGCATGTT 57.146 30.435 0.00 0.00 32.72 2.71
2854 7588 5.448926 AAAACAAAAACGTCTGCATGTTC 57.551 34.783 0.00 0.00 29.81 3.18
2855 7589 3.773860 ACAAAAACGTCTGCATGTTCA 57.226 38.095 0.00 0.00 29.81 3.18
2856 7590 3.694734 ACAAAAACGTCTGCATGTTCAG 58.305 40.909 0.00 0.00 29.81 3.02
2859 7593 2.455674 AACGTCTGCATGTTCAGCTA 57.544 45.000 0.00 0.00 34.19 3.32
2860 7594 2.680312 ACGTCTGCATGTTCAGCTAT 57.320 45.000 0.00 0.00 34.19 2.97
2870 7606 4.259970 GCATGTTCAGCTATAGTTGTGACG 60.260 45.833 15.27 6.49 0.00 4.35
2889 7662 2.946990 ACGGGGCTTTGGTTATTATTCG 59.053 45.455 0.00 0.00 0.00 3.34
2919 7692 2.355126 CTCGTCGTGCAGCTGTGT 60.355 61.111 16.64 0.00 0.00 3.72
2920 7693 2.652079 CTCGTCGTGCAGCTGTGTG 61.652 63.158 16.64 5.22 0.00 3.82
2933 7706 3.999229 GCTGTGTGCTACATTAGTGTC 57.001 47.619 0.00 0.00 38.92 3.67
2934 7707 3.325870 GCTGTGTGCTACATTAGTGTCA 58.674 45.455 0.00 0.00 38.92 3.58
2935 7708 3.745975 GCTGTGTGCTACATTAGTGTCAA 59.254 43.478 0.00 0.00 38.92 3.18
2936 7709 4.213270 GCTGTGTGCTACATTAGTGTCAAA 59.787 41.667 0.00 0.00 38.92 2.69
2937 7710 5.277779 GCTGTGTGCTACATTAGTGTCAAAA 60.278 40.000 0.00 0.00 38.92 2.44
2938 7711 6.568462 GCTGTGTGCTACATTAGTGTCAAAAT 60.568 38.462 0.00 0.00 38.92 1.82
2939 7712 6.667370 TGTGTGCTACATTAGTGTCAAAATG 58.333 36.000 0.00 7.35 39.77 2.32
2941 7714 5.473162 TGTGCTACATTAGTGTCAAAATGCT 59.527 36.000 0.00 1.70 39.77 3.79
2942 7715 6.024049 GTGCTACATTAGTGTCAAAATGCTC 58.976 40.000 0.00 1.52 39.77 4.26
2943 7716 5.939883 TGCTACATTAGTGTCAAAATGCTCT 59.060 36.000 0.00 0.00 39.77 4.09
2944 7717 6.430925 TGCTACATTAGTGTCAAAATGCTCTT 59.569 34.615 0.00 0.00 39.77 2.85
2945 7718 6.744537 GCTACATTAGTGTCAAAATGCTCTTG 59.255 38.462 0.00 0.00 39.77 3.02
2946 7719 6.639632 ACATTAGTGTCAAAATGCTCTTGT 57.360 33.333 8.43 0.00 36.72 3.16
2947 7720 7.744087 ACATTAGTGTCAAAATGCTCTTGTA 57.256 32.000 8.43 0.00 36.72 2.41
2948 7721 8.340618 ACATTAGTGTCAAAATGCTCTTGTAT 57.659 30.769 8.43 0.00 36.72 2.29
2949 7722 8.796475 ACATTAGTGTCAAAATGCTCTTGTATT 58.204 29.630 8.43 0.00 36.72 1.89
2953 7726 7.765307 AGTGTCAAAATGCTCTTGTATTATGG 58.235 34.615 0.00 0.00 0.00 2.74
2954 7727 6.974622 GTGTCAAAATGCTCTTGTATTATGGG 59.025 38.462 0.00 0.00 0.00 4.00
2955 7728 6.889177 TGTCAAAATGCTCTTGTATTATGGGA 59.111 34.615 0.00 0.00 0.00 4.37
2956 7729 7.560991 TGTCAAAATGCTCTTGTATTATGGGAT 59.439 33.333 0.00 0.00 0.00 3.85
2957 7730 7.864379 GTCAAAATGCTCTTGTATTATGGGATG 59.136 37.037 0.00 0.00 0.00 3.51
2958 7731 6.906157 AAATGCTCTTGTATTATGGGATGG 57.094 37.500 0.00 0.00 0.00 3.51
2959 7732 5.848286 ATGCTCTTGTATTATGGGATGGA 57.152 39.130 0.00 0.00 0.00 3.41
2960 7733 5.233083 TGCTCTTGTATTATGGGATGGAG 57.767 43.478 0.00 0.00 0.00 3.86
2961 7734 4.042062 TGCTCTTGTATTATGGGATGGAGG 59.958 45.833 0.00 0.00 0.00 4.30
2962 7735 4.566488 GCTCTTGTATTATGGGATGGAGGG 60.566 50.000 0.00 0.00 0.00 4.30
2963 7736 4.838403 TCTTGTATTATGGGATGGAGGGA 58.162 43.478 0.00 0.00 0.00 4.20
2964 7737 4.846367 TCTTGTATTATGGGATGGAGGGAG 59.154 45.833 0.00 0.00 0.00 4.30
2965 7738 4.228237 TGTATTATGGGATGGAGGGAGT 57.772 45.455 0.00 0.00 0.00 3.85
2966 7739 5.363124 TGTATTATGGGATGGAGGGAGTA 57.637 43.478 0.00 0.00 0.00 2.59
2967 7740 5.091552 TGTATTATGGGATGGAGGGAGTAC 58.908 45.833 0.00 0.00 0.00 2.73
2968 7741 4.510303 ATTATGGGATGGAGGGAGTACT 57.490 45.455 0.00 0.00 0.00 2.73
2969 7742 2.897823 ATGGGATGGAGGGAGTACTT 57.102 50.000 0.00 0.00 0.00 2.24
2970 7743 2.176247 TGGGATGGAGGGAGTACTTC 57.824 55.000 0.00 0.00 0.00 3.01
2971 7744 1.651770 TGGGATGGAGGGAGTACTTCT 59.348 52.381 0.01 0.06 0.00 2.85
2972 7745 2.321719 GGGATGGAGGGAGTACTTCTC 58.678 57.143 14.97 14.97 42.07 2.87
2973 7746 1.957877 GGATGGAGGGAGTACTTCTCG 59.042 57.143 16.10 0.00 43.60 4.04
2974 7747 2.657143 GATGGAGGGAGTACTTCTCGT 58.343 52.381 16.10 10.27 43.60 4.18
2975 7748 1.835494 TGGAGGGAGTACTTCTCGTG 58.165 55.000 16.10 0.00 43.60 4.35
2976 7749 0.456628 GGAGGGAGTACTTCTCGTGC 59.543 60.000 16.10 5.96 43.60 5.34
2977 7750 1.465794 GAGGGAGTACTTCTCGTGCT 58.534 55.000 0.01 0.00 43.60 4.40
2978 7751 1.133407 GAGGGAGTACTTCTCGTGCTG 59.867 57.143 0.01 0.00 43.60 4.41
2979 7752 0.889306 GGGAGTACTTCTCGTGCTGT 59.111 55.000 0.01 0.00 43.60 4.40
2980 7753 1.272769 GGGAGTACTTCTCGTGCTGTT 59.727 52.381 0.01 0.00 43.60 3.16
2981 7754 2.329379 GGAGTACTTCTCGTGCTGTTG 58.671 52.381 0.00 0.00 43.60 3.33
2982 7755 2.030185 GGAGTACTTCTCGTGCTGTTGA 60.030 50.000 0.00 0.00 43.60 3.18
2990 7763 0.531974 TCGTGCTGTTGAGGGTTGTC 60.532 55.000 0.00 0.00 0.00 3.18
2994 7767 0.108585 GCTGTTGAGGGTTGTCTGGA 59.891 55.000 0.00 0.00 0.00 3.86
3004 7777 4.546674 AGGGTTGTCTGGATTCAGTTTTT 58.453 39.130 0.00 0.00 41.59 1.94
3009 7782 6.462909 GGTTGTCTGGATTCAGTTTTTGGAAT 60.463 38.462 0.00 0.00 41.59 3.01
3010 7783 6.088016 TGTCTGGATTCAGTTTTTGGAATG 57.912 37.500 0.00 0.00 41.59 2.67
3012 7785 6.098124 TGTCTGGATTCAGTTTTTGGAATGTT 59.902 34.615 0.00 0.00 41.59 2.71
3014 7787 5.609423 TGGATTCAGTTTTTGGAATGTTGG 58.391 37.500 0.00 0.00 34.06 3.77
3022 7795 9.454859 TCAGTTTTTGGAATGTTGGTTTTAAAT 57.545 25.926 0.00 0.00 0.00 1.40
3026 7799 8.910351 TTTTGGAATGTTGGTTTTAAATAGGG 57.090 30.769 0.00 0.00 0.00 3.53
3027 7800 7.619512 TTGGAATGTTGGTTTTAAATAGGGT 57.380 32.000 0.00 0.00 0.00 4.34
3028 7801 7.619512 TGGAATGTTGGTTTTAAATAGGGTT 57.380 32.000 0.00 0.00 0.00 4.11
3029 7802 7.445945 TGGAATGTTGGTTTTAAATAGGGTTG 58.554 34.615 0.00 0.00 0.00 3.77
3030 7803 7.071321 TGGAATGTTGGTTTTAAATAGGGTTGT 59.929 33.333 0.00 0.00 0.00 3.32
3032 7805 9.634163 GAATGTTGGTTTTAAATAGGGTTGTAG 57.366 33.333 0.00 0.00 0.00 2.74
3033 7806 7.527568 TGTTGGTTTTAAATAGGGTTGTAGG 57.472 36.000 0.00 0.00 0.00 3.18
3034 7807 6.494146 TGTTGGTTTTAAATAGGGTTGTAGGG 59.506 38.462 0.00 0.00 0.00 3.53
3035 7808 5.581975 TGGTTTTAAATAGGGTTGTAGGGG 58.418 41.667 0.00 0.00 0.00 4.79
3036 7809 5.315377 TGGTTTTAAATAGGGTTGTAGGGGA 59.685 40.000 0.00 0.00 0.00 4.81
3037 7810 6.183361 TGGTTTTAAATAGGGTTGTAGGGGAA 60.183 38.462 0.00 0.00 0.00 3.97
3038 7811 6.725369 GGTTTTAAATAGGGTTGTAGGGGAAA 59.275 38.462 0.00 0.00 0.00 3.13
3039 7812 7.235193 GGTTTTAAATAGGGTTGTAGGGGAAAA 59.765 37.037 0.00 0.00 0.00 2.29
3040 7813 7.779754 TTTAAATAGGGTTGTAGGGGAAAAC 57.220 36.000 0.00 0.00 0.00 2.43
3041 7814 5.342361 AAATAGGGTTGTAGGGGAAAACA 57.658 39.130 0.00 0.00 0.00 2.83
3042 7815 2.971901 AGGGTTGTAGGGGAAAACAG 57.028 50.000 0.00 0.00 0.00 3.16
3043 7816 1.427753 AGGGTTGTAGGGGAAAACAGG 59.572 52.381 0.00 0.00 0.00 4.00
3044 7817 1.549265 GGGTTGTAGGGGAAAACAGGG 60.549 57.143 0.00 0.00 0.00 4.45
3045 7818 1.254026 GTTGTAGGGGAAAACAGGGC 58.746 55.000 0.00 0.00 0.00 5.19
3058 7831 3.857157 AACAGGGCTGTAGTTTTCTGA 57.143 42.857 0.00 0.00 44.13 3.27
3060 7833 3.679389 ACAGGGCTGTAGTTTTCTGATG 58.321 45.455 0.00 0.00 42.90 3.07
3065 7838 3.753272 GGCTGTAGTTTTCTGATGAGCAA 59.247 43.478 0.00 0.00 0.00 3.91
3066 7839 4.216257 GGCTGTAGTTTTCTGATGAGCAAA 59.784 41.667 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.432378 AGAACGAGGTTGAGTGGTAGAT 58.568 45.455 0.00 0.00 0.00 1.98
16 17 2.095213 CGAGAGAGAGAACGAGGTTGAG 59.905 54.545 0.00 0.00 0.00 3.02
26 27 1.380515 CCCCAGCCGAGAGAGAGAA 60.381 63.158 0.00 0.00 0.00 2.87
27 28 2.277072 CCCCAGCCGAGAGAGAGA 59.723 66.667 0.00 0.00 0.00 3.10
88 89 1.472662 CCCTGGACTGGTCGTTCAGT 61.473 60.000 11.83 11.83 46.15 3.41
157 158 3.213402 GTCTCCCTCCCTCTCGCG 61.213 72.222 0.00 0.00 0.00 5.87
159 160 2.517402 CCGTCTCCCTCCCTCTCG 60.517 72.222 0.00 0.00 0.00 4.04
197 200 0.391793 GCCCTTTCCCTTCACTCTCG 60.392 60.000 0.00 0.00 0.00 4.04
210 213 2.097825 ACTATACTCGTCGTGCCCTTT 58.902 47.619 0.00 0.00 0.00 3.11
212 215 1.022735 CACTATACTCGTCGTGCCCT 58.977 55.000 0.00 0.00 0.00 5.19
223 226 3.181478 GGTGAAACGCTAGCCACTATACT 60.181 47.826 17.68 0.00 38.12 2.12
415 419 2.472909 GGGCCGCTACTGTCATTGC 61.473 63.158 0.00 0.00 0.00 3.56
452 456 2.586258 ATGTCGTATCTGGCTGACAC 57.414 50.000 0.00 0.00 43.42 3.67
533 805 1.305465 AATGGAGCAATGCTGGCCA 60.305 52.632 14.48 15.71 39.88 5.36
540 812 2.995258 CCGGTTTTTGAATGGAGCAATG 59.005 45.455 0.00 0.00 0.00 2.82
551 823 1.228429 CTGGCCCTCCGGTTTTTGA 60.228 57.895 0.00 0.00 33.91 2.69
600 872 0.175760 GACTAGACTGCATTCGCCCA 59.824 55.000 0.00 0.00 37.32 5.36
673 957 2.105993 AGTTAGGTTTTCTTCCGGCTGT 59.894 45.455 0.00 0.00 0.00 4.40
796 1109 2.750637 GGAGGTGGAGCTCGACGA 60.751 66.667 20.78 0.00 0.00 4.20
847 1163 3.075005 GAGGTGGTGGCGCTAGGA 61.075 66.667 7.64 0.00 0.00 2.94
1042 1395 0.304705 GACCGCGCATATGACCTTTG 59.695 55.000 8.75 0.00 0.00 2.77
1046 1399 1.068474 GTATGACCGCGCATATGACC 58.932 55.000 8.75 0.00 33.67 4.02
1047 1400 0.708370 CGTATGACCGCGCATATGAC 59.292 55.000 16.42 4.68 39.15 3.06
1048 1401 0.312729 ACGTATGACCGCGCATATGA 59.687 50.000 23.94 0.00 39.15 2.15
1049 1402 0.434628 CACGTATGACCGCGCATATG 59.565 55.000 18.57 18.57 41.39 1.78
1050 1403 1.282248 GCACGTATGACCGCGCATAT 61.282 55.000 8.75 0.00 36.03 1.78
1051 1404 1.947146 GCACGTATGACCGCGCATA 60.947 57.895 8.75 0.68 36.03 3.14
1052 1405 3.261951 GCACGTATGACCGCGCAT 61.262 61.111 8.75 1.85 36.03 4.73
1053 1406 4.429212 AGCACGTATGACCGCGCA 62.429 61.111 8.75 0.00 38.30 6.09
1054 1407 3.617538 GAGCACGTATGACCGCGC 61.618 66.667 0.00 0.00 36.21 6.86
1055 1408 1.742900 CTTGAGCACGTATGACCGCG 61.743 60.000 0.00 0.00 0.00 6.46
1056 1409 1.421410 CCTTGAGCACGTATGACCGC 61.421 60.000 0.00 0.00 0.00 5.68
1057 1410 0.108804 ACCTTGAGCACGTATGACCG 60.109 55.000 0.00 0.00 0.00 4.79
1157 1536 1.276989 GGTAACATTCCACGGTCCAGA 59.723 52.381 0.00 0.00 0.00 3.86
1221 4140 3.510388 TCAGCAGATTCAAGACGTAGG 57.490 47.619 0.00 0.00 0.00 3.18
1259 4181 3.851098 AGTAGACTGAGCGTGAATTTCC 58.149 45.455 0.00 0.00 0.00 3.13
1378 4304 0.530211 CGCTCCAGATCAGCCTTCTG 60.530 60.000 0.00 2.06 40.25 3.02
1593 4530 1.550524 TCCACCTTGAAGACGGATGAG 59.449 52.381 0.00 0.00 0.00 2.90
2035 4972 2.217750 TGTCATGACAACGTCCTTTGG 58.782 47.619 26.02 0.00 38.56 3.28
2473 7160 2.744202 ACAGCGTTCAAGAATAGCCTTG 59.256 45.455 8.78 0.00 43.58 3.61
2497 7184 5.313712 TCCAGTTTTTCCTCATACACCTTC 58.686 41.667 0.00 0.00 0.00 3.46
2507 7194 2.294449 AAGCCCTCCAGTTTTTCCTC 57.706 50.000 0.00 0.00 0.00 3.71
2541 7228 0.037326 TTGCTGCAGTTCCTCTACCG 60.037 55.000 16.64 0.00 0.00 4.02
2549 7236 3.057033 ACCTCATGAATTTGCTGCAGTTC 60.057 43.478 16.64 17.59 0.00 3.01
2619 7306 4.262249 GGAGTATCAAGGACATACCAGAGC 60.262 50.000 0.00 0.00 37.89 4.09
2629 7316 4.061596 GCTGCTAATGGAGTATCAAGGAC 58.938 47.826 0.00 0.00 36.25 3.85
2630 7317 3.711190 TGCTGCTAATGGAGTATCAAGGA 59.289 43.478 0.00 0.00 36.25 3.36
2631 7318 3.812053 GTGCTGCTAATGGAGTATCAAGG 59.188 47.826 0.00 0.00 36.25 3.61
2633 7320 4.162131 TGAGTGCTGCTAATGGAGTATCAA 59.838 41.667 0.00 0.00 36.25 2.57
2635 7322 4.327982 TGAGTGCTGCTAATGGAGTATC 57.672 45.455 0.00 0.00 33.91 2.24
2780 7474 4.156556 CACAAGATACCAAGGTCCACATTG 59.843 45.833 0.00 0.00 37.38 2.82
2843 7577 4.872691 ACAACTATAGCTGAACATGCAGAC 59.127 41.667 10.11 0.00 38.14 3.51
2853 7587 1.754803 CCCCGTCACAACTATAGCTGA 59.245 52.381 10.11 1.16 0.00 4.26
2854 7588 1.806623 GCCCCGTCACAACTATAGCTG 60.807 57.143 0.00 0.00 0.00 4.24
2855 7589 0.464452 GCCCCGTCACAACTATAGCT 59.536 55.000 0.00 0.00 0.00 3.32
2856 7590 0.464452 AGCCCCGTCACAACTATAGC 59.536 55.000 0.00 0.00 0.00 2.97
2859 7593 1.613255 CCAAAGCCCCGTCACAACTAT 60.613 52.381 0.00 0.00 0.00 2.12
2860 7594 0.250553 CCAAAGCCCCGTCACAACTA 60.251 55.000 0.00 0.00 0.00 2.24
2870 7606 2.956333 AGCGAATAATAACCAAAGCCCC 59.044 45.455 0.00 0.00 0.00 5.80
2889 7662 2.217393 CACGACGAGCAATATTCAGAGC 59.783 50.000 0.00 0.00 0.00 4.09
2919 7692 5.939883 AGAGCATTTTGACACTAATGTAGCA 59.060 36.000 9.86 0.00 39.95 3.49
2920 7693 6.428385 AGAGCATTTTGACACTAATGTAGC 57.572 37.500 9.86 0.00 39.95 3.58
2923 7696 6.639632 ACAAGAGCATTTTGACACTAATGT 57.360 33.333 9.86 0.00 43.71 2.71
2927 7700 8.892723 CCATAATACAAGAGCATTTTGACACTA 58.107 33.333 2.44 0.00 0.00 2.74
2928 7701 7.148018 CCCATAATACAAGAGCATTTTGACACT 60.148 37.037 2.44 0.00 0.00 3.55
2930 7703 6.889177 TCCCATAATACAAGAGCATTTTGACA 59.111 34.615 2.44 0.00 0.00 3.58
2931 7704 7.333528 TCCCATAATACAAGAGCATTTTGAC 57.666 36.000 2.44 0.00 0.00 3.18
2932 7705 7.014518 CCATCCCATAATACAAGAGCATTTTGA 59.985 37.037 2.44 0.00 0.00 2.69
2933 7706 7.014518 TCCATCCCATAATACAAGAGCATTTTG 59.985 37.037 0.00 0.00 0.00 2.44
2934 7707 7.068702 TCCATCCCATAATACAAGAGCATTTT 58.931 34.615 0.00 0.00 0.00 1.82
2935 7708 6.613699 TCCATCCCATAATACAAGAGCATTT 58.386 36.000 0.00 0.00 0.00 2.32
2936 7709 6.204852 TCCATCCCATAATACAAGAGCATT 57.795 37.500 0.00 0.00 0.00 3.56
2937 7710 5.280882 CCTCCATCCCATAATACAAGAGCAT 60.281 44.000 0.00 0.00 0.00 3.79
2938 7711 4.042062 CCTCCATCCCATAATACAAGAGCA 59.958 45.833 0.00 0.00 0.00 4.26
2939 7712 4.566488 CCCTCCATCCCATAATACAAGAGC 60.566 50.000 0.00 0.00 0.00 4.09
2941 7714 4.838403 TCCCTCCATCCCATAATACAAGA 58.162 43.478 0.00 0.00 0.00 3.02
2942 7715 4.599241 ACTCCCTCCATCCCATAATACAAG 59.401 45.833 0.00 0.00 0.00 3.16
2943 7716 4.577096 ACTCCCTCCATCCCATAATACAA 58.423 43.478 0.00 0.00 0.00 2.41
2944 7717 4.228237 ACTCCCTCCATCCCATAATACA 57.772 45.455 0.00 0.00 0.00 2.29
2945 7718 5.342866 AGTACTCCCTCCATCCCATAATAC 58.657 45.833 0.00 0.00 0.00 1.89
2946 7719 5.633473 AGTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
2947 7720 4.510303 AGTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
2948 7721 4.077982 AGAAGTACTCCCTCCATCCCATAA 60.078 45.833 0.00 0.00 0.00 1.90
2949 7722 3.471306 AGAAGTACTCCCTCCATCCCATA 59.529 47.826 0.00 0.00 0.00 2.74
2950 7723 2.251338 AGAAGTACTCCCTCCATCCCAT 59.749 50.000 0.00 0.00 0.00 4.00
2951 7724 1.651770 AGAAGTACTCCCTCCATCCCA 59.348 52.381 0.00 0.00 0.00 4.37
2952 7725 2.321719 GAGAAGTACTCCCTCCATCCC 58.678 57.143 12.00 0.00 39.53 3.85
2953 7726 1.957877 CGAGAAGTACTCCCTCCATCC 59.042 57.143 15.50 0.00 42.18 3.51
2954 7727 2.359531 CACGAGAAGTACTCCCTCCATC 59.640 54.545 15.50 1.08 42.18 3.51
2955 7728 2.379972 CACGAGAAGTACTCCCTCCAT 58.620 52.381 15.50 5.67 42.18 3.41
2956 7729 1.835494 CACGAGAAGTACTCCCTCCA 58.165 55.000 15.50 0.00 42.18 3.86
2957 7730 0.456628 GCACGAGAAGTACTCCCTCC 59.543 60.000 15.50 3.35 42.18 4.30
2958 7731 1.133407 CAGCACGAGAAGTACTCCCTC 59.867 57.143 12.70 12.70 42.18 4.30
2959 7732 1.178276 CAGCACGAGAAGTACTCCCT 58.822 55.000 0.00 0.00 42.18 4.20
2960 7733 0.889306 ACAGCACGAGAAGTACTCCC 59.111 55.000 0.00 0.00 42.18 4.30
2961 7734 2.030185 TCAACAGCACGAGAAGTACTCC 60.030 50.000 0.00 0.00 42.18 3.85
2962 7735 3.238441 CTCAACAGCACGAGAAGTACTC 58.762 50.000 0.00 0.00 41.79 2.59
2963 7736 2.029828 CCTCAACAGCACGAGAAGTACT 60.030 50.000 0.00 0.00 0.00 2.73
2964 7737 2.329379 CCTCAACAGCACGAGAAGTAC 58.671 52.381 0.00 0.00 0.00 2.73
2965 7738 1.272490 CCCTCAACAGCACGAGAAGTA 59.728 52.381 0.00 0.00 0.00 2.24
2966 7739 0.034059 CCCTCAACAGCACGAGAAGT 59.966 55.000 0.00 0.00 0.00 3.01
2967 7740 0.034059 ACCCTCAACAGCACGAGAAG 59.966 55.000 0.00 0.00 0.00 2.85
2968 7741 0.468226 AACCCTCAACAGCACGAGAA 59.532 50.000 0.00 0.00 0.00 2.87
2969 7742 0.249868 CAACCCTCAACAGCACGAGA 60.250 55.000 0.00 0.00 0.00 4.04
2970 7743 0.532862 ACAACCCTCAACAGCACGAG 60.533 55.000 0.00 0.00 0.00 4.18
2971 7744 0.531974 GACAACCCTCAACAGCACGA 60.532 55.000 0.00 0.00 0.00 4.35
2972 7745 0.532862 AGACAACCCTCAACAGCACG 60.533 55.000 0.00 0.00 0.00 5.34
2973 7746 0.947244 CAGACAACCCTCAACAGCAC 59.053 55.000 0.00 0.00 0.00 4.40
2974 7747 0.179020 CCAGACAACCCTCAACAGCA 60.179 55.000 0.00 0.00 0.00 4.41
2975 7748 0.108585 TCCAGACAACCCTCAACAGC 59.891 55.000 0.00 0.00 0.00 4.40
2976 7749 2.867109 ATCCAGACAACCCTCAACAG 57.133 50.000 0.00 0.00 0.00 3.16
2977 7750 2.441375 TGAATCCAGACAACCCTCAACA 59.559 45.455 0.00 0.00 0.00 3.33
2978 7751 3.077359 CTGAATCCAGACAACCCTCAAC 58.923 50.000 0.00 0.00 43.02 3.18
2979 7752 2.711009 ACTGAATCCAGACAACCCTCAA 59.289 45.455 0.00 0.00 43.02 3.02
2980 7753 2.338809 ACTGAATCCAGACAACCCTCA 58.661 47.619 0.00 0.00 43.02 3.86
2981 7754 3.425162 AACTGAATCCAGACAACCCTC 57.575 47.619 0.00 0.00 43.02 4.30
2982 7755 3.884037 AAACTGAATCCAGACAACCCT 57.116 42.857 0.00 0.00 43.02 4.34
2990 7763 5.697633 CCAACATTCCAAAAACTGAATCCAG 59.302 40.000 0.00 0.00 45.76 3.86
2994 7767 7.936496 AAAACCAACATTCCAAAAACTGAAT 57.064 28.000 0.00 0.00 0.00 2.57
3004 7777 7.071321 ACAACCCTATTTAAAACCAACATTCCA 59.929 33.333 0.00 0.00 0.00 3.53
3009 7782 6.494146 CCCTACAACCCTATTTAAAACCAACA 59.506 38.462 0.00 0.00 0.00 3.33
3010 7783 6.071221 CCCCTACAACCCTATTTAAAACCAAC 60.071 42.308 0.00 0.00 0.00 3.77
3012 7785 5.315377 TCCCCTACAACCCTATTTAAAACCA 59.685 40.000 0.00 0.00 0.00 3.67
3014 7787 7.779754 TTTCCCCTACAACCCTATTTAAAAC 57.220 36.000 0.00 0.00 0.00 2.43
3022 7795 2.645797 CCTGTTTTCCCCTACAACCCTA 59.354 50.000 0.00 0.00 0.00 3.53
3023 7796 1.427753 CCTGTTTTCCCCTACAACCCT 59.572 52.381 0.00 0.00 0.00 4.34
3024 7797 1.549265 CCCTGTTTTCCCCTACAACCC 60.549 57.143 0.00 0.00 0.00 4.11
3026 7799 1.203013 AGCCCTGTTTTCCCCTACAAC 60.203 52.381 0.00 0.00 0.00 3.32
3027 7800 1.154430 AGCCCTGTTTTCCCCTACAA 58.846 50.000 0.00 0.00 0.00 2.41
3028 7801 0.404040 CAGCCCTGTTTTCCCCTACA 59.596 55.000 0.00 0.00 0.00 2.74
3029 7802 0.404426 ACAGCCCTGTTTTCCCCTAC 59.596 55.000 0.00 0.00 41.83 3.18
3030 7803 1.913419 CTACAGCCCTGTTTTCCCCTA 59.087 52.381 6.21 0.00 41.83 3.53
3032 7805 0.404426 ACTACAGCCCTGTTTTCCCC 59.596 55.000 6.21 0.00 41.83 4.81
3033 7806 2.287977 AACTACAGCCCTGTTTTCCC 57.712 50.000 6.21 0.00 41.83 3.97
3034 7807 4.238761 GAAAACTACAGCCCTGTTTTCC 57.761 45.455 15.44 0.00 46.43 3.13
3036 7809 4.532834 TCAGAAAACTACAGCCCTGTTTT 58.467 39.130 6.21 1.59 41.83 2.43
3037 7810 4.164843 TCAGAAAACTACAGCCCTGTTT 57.835 40.909 6.21 0.00 41.83 2.83
3038 7811 3.857157 TCAGAAAACTACAGCCCTGTT 57.143 42.857 6.21 0.00 41.83 3.16
3039 7812 3.327757 TCATCAGAAAACTACAGCCCTGT 59.672 43.478 6.17 6.17 46.87 4.00
3040 7813 3.937706 CTCATCAGAAAACTACAGCCCTG 59.062 47.826 0.00 0.00 0.00 4.45
3041 7814 3.620966 GCTCATCAGAAAACTACAGCCCT 60.621 47.826 0.00 0.00 0.00 5.19
3042 7815 2.680339 GCTCATCAGAAAACTACAGCCC 59.320 50.000 0.00 0.00 0.00 5.19
3043 7816 3.338249 TGCTCATCAGAAAACTACAGCC 58.662 45.455 0.00 0.00 0.00 4.85
3044 7817 5.362556 TTTGCTCATCAGAAAACTACAGC 57.637 39.130 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.