Multiple sequence alignment - TraesCS5A01G434300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G434300 chr5A 100.000 4853 0 0 1 4853 617256272 617251420 0.000000e+00 8962.0
1 TraesCS5A01G434300 chr5B 92.353 3570 189 37 741 4267 610664849 610661321 0.000000e+00 5003.0
2 TraesCS5A01G434300 chr5B 90.423 355 20 9 4 348 610665946 610665596 5.730000e-124 455.0
3 TraesCS5A01G434300 chr5B 83.135 421 42 12 4409 4827 610658972 610658579 1.660000e-94 357.0
4 TraesCS5A01G434300 chr5B 91.403 221 18 1 536 756 610665599 610665380 7.890000e-78 302.0
5 TraesCS5A01G434300 chr1A 83.350 3057 406 65 887 3915 96462557 96465538 0.000000e+00 2730.0
6 TraesCS5A01G434300 chr1A 81.092 3078 405 82 883 3898 96470370 96473332 0.000000e+00 2296.0
7 TraesCS5A01G434300 chr1D 81.974 2796 379 69 1183 3912 78983061 78980325 0.000000e+00 2255.0
8 TraesCS5A01G434300 chr5D 90.488 1230 70 10 536 1761 494246658 494245472 0.000000e+00 1580.0
9 TraesCS5A01G434300 chr5D 90.202 347 25 7 1 342 494247011 494246669 1.240000e-120 444.0
10 TraesCS5A01G434300 chr1B 83.288 1478 182 36 2452 3912 123966499 123965070 0.000000e+00 1301.0
11 TraesCS5A01G434300 chr1B 82.505 1429 209 26 887 2307 123968027 123966632 0.000000e+00 1216.0
12 TraesCS5A01G434300 chr1B 83.355 757 84 20 2765 3493 123974224 123973482 0.000000e+00 662.0
13 TraesCS5A01G434300 chr6A 81.878 1512 195 36 2374 3853 573269 571805 0.000000e+00 1201.0
14 TraesCS5A01G434300 chr6A 79.821 1452 242 28 891 2317 574794 573369 0.000000e+00 1011.0
15 TraesCS5A01G434300 chr6A 84.021 582 64 15 2372 2944 1411923 1412484 2.570000e-147 532.0
16 TraesCS5A01G434300 chr6B 80.403 1638 200 57 2273 3853 3824636 3823063 0.000000e+00 1134.0
17 TraesCS5A01G434300 chr6B 82.156 269 39 7 887 1154 4385662 4385922 6.320000e-54 222.0
18 TraesCS5A01G434300 chrUn 84.180 1024 112 29 2476 3470 246306692 246305690 0.000000e+00 948.0
19 TraesCS5A01G434300 chrUn 84.082 1024 113 29 2476 3470 217765514 217764512 0.000000e+00 942.0
20 TraesCS5A01G434300 chrUn 78.741 1096 196 19 1229 2317 217766764 217765699 0.000000e+00 699.0
21 TraesCS5A01G434300 chrUn 78.741 1096 196 19 1229 2317 246307942 246306877 0.000000e+00 699.0
22 TraesCS5A01G434300 chrUn 78.467 1096 199 19 1229 2317 255506942 255505877 0.000000e+00 682.0
23 TraesCS5A01G434300 chrUn 82.156 269 39 7 887 1154 246308229 246307969 6.320000e-54 222.0
24 TraesCS5A01G434300 chrUn 82.156 269 39 7 887 1154 255507229 255506969 6.320000e-54 222.0
25 TraesCS5A01G434300 chrUn 85.263 95 9 4 348 439 15760893 15760801 5.170000e-15 93.5
26 TraesCS5A01G434300 chrUn 79.787 94 13 5 3306 3396 264520529 264520619 4.060000e-06 63.9
27 TraesCS5A01G434300 chr2D 82.165 970 146 20 2958 3918 640043154 640042203 0.000000e+00 808.0
28 TraesCS5A01G434300 chr2D 85.772 492 51 12 2448 2933 640043795 640043317 2.020000e-138 503.0
29 TraesCS5A01G434300 chr2D 77.222 900 164 26 1364 2237 640044884 640044000 5.650000e-134 488.0
30 TraesCS5A01G434300 chr2A 80.448 803 143 10 997 1795 194122066 194122858 6.950000e-168 601.0
31 TraesCS5A01G434300 chr4B 96.875 32 1 0 3306 3337 659498270 659498239 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G434300 chr5A 617251420 617256272 4852 True 8962.000000 8962 100.000000 1 4853 1 chr5A.!!$R1 4852
1 TraesCS5A01G434300 chr5B 610658579 610665946 7367 True 1529.250000 5003 89.328500 4 4827 4 chr5B.!!$R1 4823
2 TraesCS5A01G434300 chr1A 96462557 96465538 2981 False 2730.000000 2730 83.350000 887 3915 1 chr1A.!!$F1 3028
3 TraesCS5A01G434300 chr1A 96470370 96473332 2962 False 2296.000000 2296 81.092000 883 3898 1 chr1A.!!$F2 3015
4 TraesCS5A01G434300 chr1D 78980325 78983061 2736 True 2255.000000 2255 81.974000 1183 3912 1 chr1D.!!$R1 2729
5 TraesCS5A01G434300 chr5D 494245472 494247011 1539 True 1012.000000 1580 90.345000 1 1761 2 chr5D.!!$R1 1760
6 TraesCS5A01G434300 chr1B 123965070 123968027 2957 True 1258.500000 1301 82.896500 887 3912 2 chr1B.!!$R2 3025
7 TraesCS5A01G434300 chr1B 123973482 123974224 742 True 662.000000 662 83.355000 2765 3493 1 chr1B.!!$R1 728
8 TraesCS5A01G434300 chr6A 571805 574794 2989 True 1106.000000 1201 80.849500 891 3853 2 chr6A.!!$R1 2962
9 TraesCS5A01G434300 chr6A 1411923 1412484 561 False 532.000000 532 84.021000 2372 2944 1 chr6A.!!$F1 572
10 TraesCS5A01G434300 chr6B 3823063 3824636 1573 True 1134.000000 1134 80.403000 2273 3853 1 chr6B.!!$R1 1580
11 TraesCS5A01G434300 chrUn 217764512 217766764 2252 True 820.500000 942 81.411500 1229 3470 2 chrUn.!!$R2 2241
12 TraesCS5A01G434300 chrUn 246305690 246308229 2539 True 623.000000 948 81.692333 887 3470 3 chrUn.!!$R3 2583
13 TraesCS5A01G434300 chrUn 255505877 255507229 1352 True 452.000000 682 80.311500 887 2317 2 chrUn.!!$R4 1430
14 TraesCS5A01G434300 chr2D 640042203 640044884 2681 True 599.666667 808 81.719667 1364 3918 3 chr2D.!!$R1 2554
15 TraesCS5A01G434300 chr2A 194122066 194122858 792 False 601.000000 601 80.448000 997 1795 1 chr2A.!!$F1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 548 0.033699 AATTCCCAGCCTCTTCCAGC 60.034 55.0 0.0 0.0 0.00 4.85 F
1884 2490 0.029567 CGATCCAGTGCGAGGTCTAC 59.970 60.0 0.0 0.0 0.00 2.59 F
2411 3079 0.037882 TGCTGCCGAGACAGAAGAAG 60.038 55.0 0.0 0.0 40.25 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2447 3115 0.389948 GTACCTGAAGCCAGTCGGTG 60.390 60.0 0.0 0.0 38.74 4.94 R
3544 4429 0.550914 TCCCATACCTGCACCCAATC 59.449 55.0 0.0 0.0 0.00 2.67 R
3973 4866 0.179059 TGACGCCTCTTCACAGCAAA 60.179 50.0 0.0 0.0 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 7.066766 GCTGAAGTTGACCTAGAATGAATTGAT 59.933 37.037 0.00 0.00 0.00 2.57
195 198 7.880195 AGTGACTAGATTGCATTCTGTTAACTT 59.120 33.333 19.03 0.04 0.00 2.66
207 210 8.623903 GCATTCTGTTAACTTATCCATCATTCA 58.376 33.333 7.22 0.00 0.00 2.57
254 261 2.165998 ACCTTTCAATCAGCCTTGCTC 58.834 47.619 0.00 0.00 36.40 4.26
261 268 0.108138 ATCAGCCTTGCTCGTGTACC 60.108 55.000 0.00 0.00 36.40 3.34
266 273 1.136305 GCCTTGCTCGTGTACCAGATA 59.864 52.381 0.00 0.00 0.00 1.98
267 274 2.224066 GCCTTGCTCGTGTACCAGATAT 60.224 50.000 0.00 0.00 0.00 1.63
275 282 5.241064 GCTCGTGTACCAGATATAAGAAGGA 59.759 44.000 0.00 0.00 0.00 3.36
279 286 6.208797 CGTGTACCAGATATAAGAAGGATCCA 59.791 42.308 15.82 0.00 0.00 3.41
285 292 9.482175 ACCAGATATAAGAAGGATCCATACTAC 57.518 37.037 15.82 0.00 0.00 2.73
300 308 5.071370 CCATACTACTATCGGAGGTGAAGT 58.929 45.833 0.00 0.00 0.00 3.01
301 309 5.181622 CCATACTACTATCGGAGGTGAAGTC 59.818 48.000 0.00 0.00 0.00 3.01
302 310 4.506937 ACTACTATCGGAGGTGAAGTCT 57.493 45.455 0.00 0.00 0.00 3.24
303 311 4.857679 ACTACTATCGGAGGTGAAGTCTT 58.142 43.478 0.00 0.00 0.00 3.01
328 338 2.814336 CTCACCAACCTAAAACCTCTGC 59.186 50.000 0.00 0.00 0.00 4.26
330 340 3.157087 CACCAACCTAAAACCTCTGCAT 58.843 45.455 0.00 0.00 0.00 3.96
334 344 4.280677 CCAACCTAAAACCTCTGCATTGAA 59.719 41.667 0.00 0.00 0.00 2.69
342 359 1.608055 CTCTGCATTGAACCACCACA 58.392 50.000 0.00 0.00 0.00 4.17
345 362 1.955778 CTGCATTGAACCACCACAAGA 59.044 47.619 0.00 0.00 0.00 3.02
346 363 1.955778 TGCATTGAACCACCACAAGAG 59.044 47.619 0.00 0.00 0.00 2.85
347 364 1.956477 GCATTGAACCACCACAAGAGT 59.044 47.619 0.00 0.00 0.00 3.24
348 365 2.362077 GCATTGAACCACCACAAGAGTT 59.638 45.455 0.00 0.00 0.00 3.01
349 366 3.568007 GCATTGAACCACCACAAGAGTTA 59.432 43.478 0.00 0.00 0.00 2.24
350 367 4.320494 GCATTGAACCACCACAAGAGTTAG 60.320 45.833 0.00 0.00 0.00 2.34
351 368 3.485463 TGAACCACCACAAGAGTTAGG 57.515 47.619 0.00 0.00 0.00 2.69
352 369 2.152016 GAACCACCACAAGAGTTAGGC 58.848 52.381 0.00 0.00 0.00 3.93
353 370 0.400594 ACCACCACAAGAGTTAGGCC 59.599 55.000 0.00 0.00 0.00 5.19
354 371 0.322546 CCACCACAAGAGTTAGGCCC 60.323 60.000 0.00 0.00 0.00 5.80
355 372 0.693049 CACCACAAGAGTTAGGCCCT 59.307 55.000 0.00 0.00 0.00 5.19
356 373 0.693049 ACCACAAGAGTTAGGCCCTG 59.307 55.000 0.00 0.00 0.00 4.45
357 374 0.693049 CCACAAGAGTTAGGCCCTGT 59.307 55.000 0.00 0.00 0.00 4.00
358 375 1.073923 CCACAAGAGTTAGGCCCTGTT 59.926 52.381 0.00 0.00 0.00 3.16
359 376 2.427506 CACAAGAGTTAGGCCCTGTTC 58.572 52.381 0.00 0.00 0.00 3.18
360 377 1.002087 ACAAGAGTTAGGCCCTGTTCG 59.998 52.381 0.00 0.00 0.00 3.95
361 378 0.613777 AAGAGTTAGGCCCTGTTCGG 59.386 55.000 0.00 0.00 0.00 4.30
370 387 3.294750 CCTGTTCGGGATCGTCCA 58.705 61.111 6.41 0.00 38.64 4.02
371 388 1.141881 CCTGTTCGGGATCGTCCAG 59.858 63.158 6.41 2.85 38.64 3.86
372 389 1.519455 CTGTTCGGGATCGTCCAGC 60.519 63.158 6.41 0.00 38.64 4.85
373 390 1.949847 CTGTTCGGGATCGTCCAGCT 61.950 60.000 6.41 0.00 38.64 4.24
374 391 1.227002 GTTCGGGATCGTCCAGCTC 60.227 63.158 6.41 0.00 38.64 4.09
375 392 2.423898 TTCGGGATCGTCCAGCTCC 61.424 63.158 6.41 0.00 38.64 4.70
376 393 3.147595 CGGGATCGTCCAGCTCCA 61.148 66.667 6.41 0.00 38.64 3.86
377 394 2.501610 GGGATCGTCCAGCTCCAC 59.498 66.667 6.41 0.00 38.64 4.02
378 395 2.105128 GGATCGTCCAGCTCCACG 59.895 66.667 7.52 7.52 36.28 4.94
379 396 2.105128 GATCGTCCAGCTCCACGG 59.895 66.667 12.81 0.00 36.64 4.94
380 397 2.362503 ATCGTCCAGCTCCACGGA 60.363 61.111 12.81 0.34 36.64 4.69
381 398 1.945354 GATCGTCCAGCTCCACGGAA 61.945 60.000 12.81 0.00 36.64 4.30
382 399 1.330655 ATCGTCCAGCTCCACGGAAT 61.331 55.000 12.81 0.00 36.64 3.01
383 400 0.681887 TCGTCCAGCTCCACGGAATA 60.682 55.000 12.81 0.00 36.64 1.75
384 401 0.527817 CGTCCAGCTCCACGGAATAC 60.528 60.000 6.13 0.00 31.67 1.89
394 411 2.027169 CGGAATACGGGAGCGGAC 59.973 66.667 0.00 0.00 39.42 4.79
395 412 2.027169 GGAATACGGGAGCGGACG 59.973 66.667 0.00 0.00 0.00 4.79
396 413 2.027169 GAATACGGGAGCGGACGG 59.973 66.667 0.00 0.00 0.00 4.79
397 414 2.440796 AATACGGGAGCGGACGGA 60.441 61.111 0.00 0.00 0.00 4.69
398 415 2.403671 GAATACGGGAGCGGACGGAG 62.404 65.000 0.00 0.00 0.00 4.63
408 425 3.423154 GGACGGAGCGCCACTTTG 61.423 66.667 7.44 0.00 0.00 2.77
409 426 3.423154 GACGGAGCGCCACTTTGG 61.423 66.667 7.44 0.00 41.55 3.28
418 435 4.597032 CCACTTTGGCAACTCCCA 57.403 55.556 0.00 0.00 37.61 4.37
419 436 2.344535 CCACTTTGGCAACTCCCAG 58.655 57.895 0.00 0.00 36.00 4.45
420 437 0.178992 CCACTTTGGCAACTCCCAGA 60.179 55.000 0.00 0.00 36.00 3.86
421 438 1.691196 CACTTTGGCAACTCCCAGAA 58.309 50.000 0.00 0.00 36.00 3.02
422 439 2.031120 CACTTTGGCAACTCCCAGAAA 58.969 47.619 0.00 0.00 36.00 2.52
423 440 2.430332 CACTTTGGCAACTCCCAGAAAA 59.570 45.455 0.00 0.00 36.00 2.29
424 441 3.070015 CACTTTGGCAACTCCCAGAAAAT 59.930 43.478 0.00 0.00 36.00 1.82
425 442 4.280677 CACTTTGGCAACTCCCAGAAAATA 59.719 41.667 0.00 0.00 36.00 1.40
426 443 4.280929 ACTTTGGCAACTCCCAGAAAATAC 59.719 41.667 0.00 0.00 36.00 1.89
427 444 2.432444 TGGCAACTCCCAGAAAATACG 58.568 47.619 0.00 0.00 37.61 3.06
428 445 1.132453 GGCAACTCCCAGAAAATACGC 59.868 52.381 0.00 0.00 0.00 4.42
429 446 2.084546 GCAACTCCCAGAAAATACGCT 58.915 47.619 0.00 0.00 0.00 5.07
430 447 2.159517 GCAACTCCCAGAAAATACGCTG 60.160 50.000 0.00 0.00 0.00 5.18
431 448 1.739067 ACTCCCAGAAAATACGCTGC 58.261 50.000 0.00 0.00 0.00 5.25
432 449 0.652592 CTCCCAGAAAATACGCTGCG 59.347 55.000 21.91 21.91 0.00 5.18
433 450 0.742990 TCCCAGAAAATACGCTGCGG 60.743 55.000 26.95 8.45 0.00 5.69
434 451 1.714899 CCCAGAAAATACGCTGCGGG 61.715 60.000 26.95 14.26 0.00 6.13
435 452 1.062525 CAGAAAATACGCTGCGGGC 59.937 57.895 26.95 8.30 37.64 6.13
436 453 2.112815 AGAAAATACGCTGCGGGCC 61.113 57.895 26.95 8.76 37.74 5.80
437 454 3.449095 GAAAATACGCTGCGGGCCG 62.449 63.158 26.95 24.35 37.74 6.13
459 476 4.527583 GCTCGGCTGCTCCAGGAG 62.528 72.222 12.81 12.81 36.50 3.69
503 520 2.285827 CCGAACAGGCTCTTACTCTG 57.714 55.000 0.00 0.00 34.91 3.35
504 521 1.634702 CGAACAGGCTCTTACTCTGC 58.365 55.000 0.00 0.00 32.19 4.26
505 522 1.067565 CGAACAGGCTCTTACTCTGCA 60.068 52.381 0.00 0.00 32.19 4.41
506 523 2.610479 CGAACAGGCTCTTACTCTGCAA 60.610 50.000 0.00 0.00 32.19 4.08
507 524 2.758736 ACAGGCTCTTACTCTGCAAG 57.241 50.000 0.00 0.00 32.19 4.01
508 525 1.974236 ACAGGCTCTTACTCTGCAAGT 59.026 47.619 6.74 6.74 42.33 3.16
509 526 2.370189 ACAGGCTCTTACTCTGCAAGTT 59.630 45.455 6.82 0.00 39.55 2.66
510 527 2.999355 CAGGCTCTTACTCTGCAAGTTC 59.001 50.000 6.82 0.00 39.55 3.01
511 528 2.634940 AGGCTCTTACTCTGCAAGTTCA 59.365 45.455 6.82 0.00 39.55 3.18
512 529 3.071602 AGGCTCTTACTCTGCAAGTTCAA 59.928 43.478 6.82 0.00 39.55 2.69
513 530 3.815401 GGCTCTTACTCTGCAAGTTCAAA 59.185 43.478 6.82 0.00 39.55 2.69
514 531 4.457257 GGCTCTTACTCTGCAAGTTCAAAT 59.543 41.667 6.82 0.00 39.55 2.32
515 532 5.048434 GGCTCTTACTCTGCAAGTTCAAATT 60.048 40.000 6.82 0.00 39.55 1.82
516 533 6.082984 GCTCTTACTCTGCAAGTTCAAATTC 58.917 40.000 6.82 0.00 39.55 2.17
517 534 6.560253 TCTTACTCTGCAAGTTCAAATTCC 57.440 37.500 6.82 0.00 39.55 3.01
518 535 5.473504 TCTTACTCTGCAAGTTCAAATTCCC 59.526 40.000 6.82 0.00 39.55 3.97
519 536 3.565307 ACTCTGCAAGTTCAAATTCCCA 58.435 40.909 0.00 0.00 33.03 4.37
520 537 3.571401 ACTCTGCAAGTTCAAATTCCCAG 59.429 43.478 0.00 0.00 33.03 4.45
521 538 2.297033 TCTGCAAGTTCAAATTCCCAGC 59.703 45.455 0.00 0.00 33.76 4.85
522 539 1.344114 TGCAAGTTCAAATTCCCAGCC 59.656 47.619 0.00 0.00 0.00 4.85
523 540 1.620323 GCAAGTTCAAATTCCCAGCCT 59.380 47.619 0.00 0.00 0.00 4.58
524 541 2.353109 GCAAGTTCAAATTCCCAGCCTC 60.353 50.000 0.00 0.00 0.00 4.70
525 542 3.160269 CAAGTTCAAATTCCCAGCCTCT 58.840 45.455 0.00 0.00 0.00 3.69
526 543 3.532641 AGTTCAAATTCCCAGCCTCTT 57.467 42.857 0.00 0.00 0.00 2.85
527 544 3.425659 AGTTCAAATTCCCAGCCTCTTC 58.574 45.455 0.00 0.00 0.00 2.87
528 545 2.493675 GTTCAAATTCCCAGCCTCTTCC 59.506 50.000 0.00 0.00 0.00 3.46
529 546 1.710244 TCAAATTCCCAGCCTCTTCCA 59.290 47.619 0.00 0.00 0.00 3.53
530 547 2.097825 CAAATTCCCAGCCTCTTCCAG 58.902 52.381 0.00 0.00 0.00 3.86
531 548 0.033699 AATTCCCAGCCTCTTCCAGC 60.034 55.000 0.00 0.00 0.00 4.85
532 549 1.931007 ATTCCCAGCCTCTTCCAGCC 61.931 60.000 0.00 0.00 0.00 4.85
533 550 4.120755 CCCAGCCTCTTCCAGCCC 62.121 72.222 0.00 0.00 0.00 5.19
534 551 3.013932 CCAGCCTCTTCCAGCCCT 61.014 66.667 0.00 0.00 0.00 5.19
584 601 1.138863 ATCCCATCCATGGCTCCTCC 61.139 60.000 6.96 0.00 46.70 4.30
644 661 7.412137 AACTTCTTTCAATTTAATGCACTGC 57.588 32.000 0.00 0.00 0.00 4.40
735 753 3.129462 CGCAGGATGAGAGACAAGTCTTA 59.871 47.826 3.96 0.00 38.60 2.10
773 1336 7.505258 CAAAACTTAATCAGGGAAGGGAAAAA 58.495 34.615 0.00 0.00 0.00 1.94
874 1437 5.319453 ACCTCACATTCATCAACAATGACT 58.681 37.500 0.00 0.00 44.14 3.41
974 1538 4.039092 CAGCTCTGGGTGGGTGGG 62.039 72.222 0.00 0.00 37.31 4.61
993 1557 0.954452 GTGGGTGTTCTTCCAAGCTG 59.046 55.000 0.00 0.00 34.47 4.24
1036 1603 1.118838 CCTCCTCCTACTCAGCCAAG 58.881 60.000 0.00 0.00 0.00 3.61
1040 1607 1.561643 CTCCTACTCAGCCAAGTCCA 58.438 55.000 0.00 0.00 0.00 4.02
1098 1665 1.213094 CGTTGTCTGGGACGACACAC 61.213 60.000 15.53 4.63 44.64 3.82
1181 1757 0.398318 ACCTCTTCCAGCTCCAACAC 59.602 55.000 0.00 0.00 0.00 3.32
1322 1901 4.993705 ACCTTGTCCTCTTTGACCAATA 57.006 40.909 0.00 0.00 34.25 1.90
1338 1917 2.636830 CAATACAGGAACAGGGAGCTG 58.363 52.381 0.00 0.00 0.00 4.24
1881 2487 2.105128 CCGATCCAGTGCGAGGTC 59.895 66.667 0.00 0.00 0.00 3.85
1884 2490 0.029567 CGATCCAGTGCGAGGTCTAC 59.970 60.000 0.00 0.00 0.00 2.59
1937 2552 4.994471 TGCCCTGACGCACTGCAG 62.994 66.667 13.48 13.48 32.62 4.41
2181 2799 0.107508 TGGATAGCTGCTCTTGCACC 60.108 55.000 4.91 2.80 45.31 5.01
2281 2905 3.350377 GAGGCGATCTCCTCCTCG 58.650 66.667 19.38 0.00 45.40 4.63
2286 2910 2.265182 CGATCTCCTCCTCGGGCTC 61.265 68.421 0.00 0.00 0.00 4.70
2311 2935 4.020617 CCGAGCTGGCAGACCCAA 62.021 66.667 20.86 0.00 44.81 4.12
2364 3024 3.544684 TGCTGGTGTAGGCTTGATAATG 58.455 45.455 0.00 0.00 0.00 1.90
2411 3079 0.037882 TGCTGCCGAGACAGAAGAAG 60.038 55.000 0.00 0.00 40.25 2.85
2419 3087 3.257393 CGAGACAGAAGAAGTCATTGGG 58.743 50.000 0.00 0.00 38.46 4.12
2442 3110 2.608623 TCCGAGAATGCTGGGATGATA 58.391 47.619 0.00 0.00 43.17 2.15
2445 3113 2.709213 GAGAATGCTGGGATGATAGCC 58.291 52.381 0.00 0.00 39.15 3.93
2446 3114 1.002888 AGAATGCTGGGATGATAGCCG 59.997 52.381 0.00 0.00 39.15 5.52
2447 3115 0.607489 AATGCTGGGATGATAGCCGC 60.607 55.000 0.00 0.00 39.15 6.53
2456 3124 2.279517 GATAGCCGCACCGACTGG 60.280 66.667 0.00 0.00 42.84 4.00
2502 3170 8.072238 TGGACGATATTCAAAGTATTGATTCG 57.928 34.615 13.02 13.02 44.70 3.34
2570 3238 2.931969 GCAAAGGAAATATGCTTGGTGC 59.068 45.455 0.00 0.00 37.29 5.01
2603 3271 8.887264 TTTGGTATGGTTCATAAGGTACAAAT 57.113 30.769 0.00 0.00 0.00 2.32
2989 3836 6.088616 GCAATGCTGATACTTCTTGTTTGAAC 59.911 38.462 0.00 0.00 0.00 3.18
3093 3940 6.511416 ACAATATCTCCACGAAGATTCTCAG 58.489 40.000 0.00 0.00 37.24 3.35
3171 4018 8.794335 ATTACAACCCTAAGATTTCTGACTTC 57.206 34.615 0.00 0.00 0.00 3.01
3175 4022 3.198872 CCTAAGATTTCTGACTTCGGCC 58.801 50.000 0.00 0.00 0.00 6.13
3258 4105 9.482627 ACATAGTAAGCATAGTTAGCATTTCTC 57.517 33.333 0.00 0.00 0.00 2.87
3266 4113 9.231297 AGCATAGTTAGCATTTCTCAGTTAAAA 57.769 29.630 0.00 0.00 0.00 1.52
3267 4114 9.278734 GCATAGTTAGCATTTCTCAGTTAAAAC 57.721 33.333 0.00 0.00 0.00 2.43
3268 4115 9.478019 CATAGTTAGCATTTCTCAGTTAAAACG 57.522 33.333 0.00 0.00 0.00 3.60
3269 4116 6.371389 AGTTAGCATTTCTCAGTTAAAACGC 58.629 36.000 0.00 0.00 0.00 4.84
3273 4120 4.146443 GCATTTCTCAGTTAAAACGCACAC 59.854 41.667 0.00 0.00 0.00 3.82
3276 4123 2.869801 TCTCAGTTAAAACGCACACAGG 59.130 45.455 0.00 0.00 0.00 4.00
3278 4125 2.610374 TCAGTTAAAACGCACACAGGAC 59.390 45.455 0.00 0.00 0.00 3.85
3292 4154 6.806249 CGCACACAGGACACAAAATTAATTAT 59.194 34.615 0.01 0.00 0.00 1.28
3293 4155 7.201342 CGCACACAGGACACAAAATTAATTATG 60.201 37.037 0.01 3.62 0.00 1.90
3294 4156 7.598493 GCACACAGGACACAAAATTAATTATGT 59.402 33.333 0.01 6.73 0.00 2.29
3416 4286 3.717707 TCGTCACAGGAAGAAGAAACAG 58.282 45.455 0.00 0.00 0.00 3.16
3428 4298 0.536006 AGAAACAGTGGCTCCTGCAC 60.536 55.000 0.00 0.00 41.91 4.57
3441 4311 1.480954 TCCTGCACCTCCGAGAAATAC 59.519 52.381 0.00 0.00 0.00 1.89
3469 4342 6.018589 ACCTCGTAAACCTTGTAAGTACTC 57.981 41.667 0.00 0.00 0.00 2.59
3471 4344 5.860716 CCTCGTAAACCTTGTAAGTACTCAC 59.139 44.000 0.00 0.00 0.00 3.51
3479 4352 4.446719 CCTTGTAAGTACTCACGAACCAAC 59.553 45.833 0.00 0.00 0.00 3.77
3512 4387 3.134127 GCGTGTGGCTCAATCCCC 61.134 66.667 0.00 0.00 39.11 4.81
3516 4391 2.438434 GTGGCTCAATCCCCACCG 60.438 66.667 0.00 0.00 44.48 4.94
3519 4394 1.202099 TGGCTCAATCCCCACCGTAA 61.202 55.000 0.00 0.00 0.00 3.18
3520 4395 0.182775 GGCTCAATCCCCACCGTAAT 59.817 55.000 0.00 0.00 0.00 1.89
3524 4399 3.473625 CTCAATCCCCACCGTAATAACC 58.526 50.000 0.00 0.00 0.00 2.85
3525 4400 2.158928 TCAATCCCCACCGTAATAACCG 60.159 50.000 0.00 0.00 0.00 4.44
3526 4401 1.792115 ATCCCCACCGTAATAACCGA 58.208 50.000 0.00 0.00 0.00 4.69
3527 4402 1.113788 TCCCCACCGTAATAACCGAG 58.886 55.000 0.00 0.00 0.00 4.63
3544 4429 3.119637 ACCGAGCAATTTGGAATTTACCG 60.120 43.478 0.00 0.00 34.08 4.02
3548 4433 5.229887 CGAGCAATTTGGAATTTACCGATTG 59.770 40.000 0.00 0.00 38.21 2.67
3572 4457 1.082954 AGGTATGGGAGCACTGGGT 59.917 57.895 0.00 0.00 0.00 4.51
3615 4500 2.580470 CGACGCATCGCTTAGCAGG 61.580 63.158 4.70 0.00 42.43 4.85
3633 4518 0.620556 GGCATCCTTCTCCCACTGAA 59.379 55.000 0.00 0.00 0.00 3.02
3652 4537 0.109153 ACAGGTGCTGAAGTGCATCA 59.891 50.000 2.59 0.00 45.75 3.07
3690 4575 1.807142 GTGCAGAACAGGCCTAAAGAC 59.193 52.381 3.98 0.00 0.00 3.01
3777 4662 4.760047 CCGGCCTTCTGTGACGGG 62.760 72.222 0.00 0.00 40.79 5.28
3783 4668 1.226746 CCTTCTGTGACGGGTTGAAC 58.773 55.000 0.00 0.00 0.00 3.18
3786 4671 1.959226 CTGTGACGGGTTGAACGGG 60.959 63.158 0.00 0.00 35.23 5.28
3892 4781 4.101898 TGAGCCAGTTTGGACTAGTGTTAA 59.898 41.667 0.00 0.00 40.96 2.01
3903 4796 8.827177 TTGGACTAGTGTTAATTTACAGTCTG 57.173 34.615 8.14 0.00 33.82 3.51
3918 4811 3.322254 ACAGTCTGTTTAGAGACCACCTG 59.678 47.826 0.00 0.00 43.04 4.00
3955 4848 8.548025 TGAAAAGTCATATATGTTCCTCCAAGA 58.452 33.333 12.42 0.00 0.00 3.02
3963 4856 8.997323 CATATATGTTCCTCCAAGATTGTCTTC 58.003 37.037 4.43 0.00 33.78 2.87
3964 4857 4.705110 TGTTCCTCCAAGATTGTCTTCA 57.295 40.909 0.00 0.00 33.78 3.02
3967 4860 4.982241 TCCTCCAAGATTGTCTTCAGTT 57.018 40.909 0.00 0.00 33.78 3.16
3973 4866 6.122277 TCCAAGATTGTCTTCAGTTTCAGTT 58.878 36.000 0.00 0.00 33.78 3.16
3985 4878 4.699735 TCAGTTTCAGTTTTGCTGTGAAGA 59.300 37.500 0.00 0.00 45.23 2.87
3989 4882 0.947244 AGTTTTGCTGTGAAGAGGCG 59.053 50.000 0.00 0.00 0.00 5.52
3991 4884 0.944386 TTTTGCTGTGAAGAGGCGTC 59.056 50.000 0.00 0.00 0.00 5.19
3992 4885 0.179059 TTTGCTGTGAAGAGGCGTCA 60.179 50.000 9.41 0.00 0.00 4.35
3993 4886 0.601046 TTGCTGTGAAGAGGCGTCAG 60.601 55.000 9.41 0.00 0.00 3.51
4004 4897 2.125269 GCGTCAGGGTATTGCCGT 60.125 61.111 0.00 0.00 38.44 5.68
4008 4901 1.029947 GTCAGGGTATTGCCGTTGGG 61.030 60.000 0.00 0.00 38.44 4.12
4009 4902 1.202099 TCAGGGTATTGCCGTTGGGA 61.202 55.000 0.00 0.00 38.44 4.37
4061 4954 1.168714 CCTTACCCTTGAGCAACTGC 58.831 55.000 0.00 0.00 42.49 4.40
4070 4963 3.305964 CTTGAGCAACTGCATTTGTCAG 58.694 45.455 17.00 5.71 45.16 3.51
4077 4970 4.498009 GCAACTGCATTTGTCAGTAAGTGT 60.498 41.667 17.00 0.00 43.36 3.55
4118 5013 9.683069 GCTCTAACTTCATTCAAATTCAAGAAA 57.317 29.630 0.00 0.00 0.00 2.52
4137 5032 8.296713 TCAAGAAAAATACAGGTACAATGCTTC 58.703 33.333 0.00 0.00 0.00 3.86
4174 5069 9.120538 TCCATGAAATTATAAAGTTACTCCTGC 57.879 33.333 0.00 0.00 0.00 4.85
4187 5082 6.228258 AGTTACTCCTGCAACGAAGAAATAA 58.772 36.000 0.00 0.00 0.00 1.40
4217 5112 7.803279 AATTTCTTAGAAACAACTTCTCGGT 57.197 32.000 9.77 0.00 43.66 4.69
4222 5117 3.725490 AGAAACAACTTCTCGGTGGTAC 58.275 45.455 0.00 0.00 40.61 3.34
4232 5127 1.737793 CTCGGTGGTACCAATCTTTGC 59.262 52.381 18.31 1.50 38.47 3.68
4236 5131 2.029380 GGTGGTACCAATCTTTGCAACC 60.029 50.000 18.31 5.58 38.42 3.77
4267 5163 2.613223 GCAAGGCTTCGGTAAAGAGACT 60.613 50.000 0.00 0.00 37.12 3.24
4269 5165 1.066787 AGGCTTCGGTAAAGAGACTGC 60.067 52.381 0.00 0.00 37.12 4.40
4271 5167 1.630148 CTTCGGTAAAGAGACTGCGG 58.370 55.000 0.00 0.00 37.12 5.69
4272 5168 0.963962 TTCGGTAAAGAGACTGCGGT 59.036 50.000 0.00 0.00 0.00 5.68
4273 5169 0.524862 TCGGTAAAGAGACTGCGGTC 59.475 55.000 18.39 18.39 42.41 4.79
4274 5170 0.242825 CGGTAAAGAGACTGCGGTCA 59.757 55.000 27.02 3.33 44.36 4.02
4275 5171 1.135083 CGGTAAAGAGACTGCGGTCAT 60.135 52.381 27.02 12.72 44.36 3.06
4277 5173 3.243434 CGGTAAAGAGACTGCGGTCATAT 60.243 47.826 27.02 12.53 44.36 1.78
4300 7294 1.355210 CGCGTGCCAAAAGAACAGT 59.645 52.632 0.00 0.00 0.00 3.55
4301 7295 0.248458 CGCGTGCCAAAAGAACAGTT 60.248 50.000 0.00 0.00 0.00 3.16
4305 7299 0.463620 TGCCAAAAGAACAGTTGGGC 59.536 50.000 4.70 0.00 43.84 5.36
4327 7321 0.319297 GCCAGCTGCCTTTGTTTCAG 60.319 55.000 8.66 0.00 0.00 3.02
4333 7327 2.608752 GCTGCCTTTGTTTCAGTGGATG 60.609 50.000 0.00 0.00 0.00 3.51
4372 7369 1.398390 GAAGCAATGAACTAGCCCACG 59.602 52.381 0.00 0.00 0.00 4.94
4381 7378 0.896226 ACTAGCCCACGGAAGAACTC 59.104 55.000 0.00 0.00 0.00 3.01
4383 7380 1.601419 TAGCCCACGGAAGAACTCGG 61.601 60.000 0.00 0.00 0.00 4.63
4401 7398 2.295909 TCGGCTTGAGGATTTGGTTTTG 59.704 45.455 0.00 0.00 0.00 2.44
4410 7407 2.703536 GGATTTGGTTTTGGGTCCAAGT 59.296 45.455 2.48 0.00 43.28 3.16
4411 7408 3.494223 GGATTTGGTTTTGGGTCCAAGTG 60.494 47.826 2.48 0.00 43.28 3.16
4424 7526 5.835819 TGGGTCCAAGTGACAAAATATTTCA 59.164 36.000 0.10 0.00 46.38 2.69
4445 7547 5.935945 TCAAGTTCTTGTCCATCCAAACTA 58.064 37.500 11.52 0.00 0.00 2.24
4504 7606 7.793927 AAAGATCGATTAGCTTTTTCCTAGG 57.206 36.000 0.82 0.82 40.92 3.02
4523 7625 3.334691 AGGTGACATGTAATTGACCACG 58.665 45.455 0.00 0.00 0.00 4.94
4530 7632 2.063266 TGTAATTGACCACGTCGAAGC 58.937 47.619 0.00 0.00 34.95 3.86
4557 7659 9.752228 ATTCCATGCACAATATATACCATTACA 57.248 29.630 0.00 0.00 0.00 2.41
4558 7660 8.791327 TCCATGCACAATATATACCATTACAG 57.209 34.615 0.00 0.00 0.00 2.74
4632 7734 2.094442 CGACTCTTTCCAAGTCTCCCTC 60.094 54.545 2.21 0.00 40.82 4.30
4637 7739 1.952621 TTCCAAGTCTCCCTCCGATT 58.047 50.000 0.00 0.00 0.00 3.34
4658 7760 6.573289 CGATTACATTTCCAAAACCCCATCAA 60.573 38.462 0.00 0.00 0.00 2.57
4677 7779 3.636300 TCAAAACCTGGTTGATTGACTGG 59.364 43.478 18.26 0.00 30.08 4.00
4681 7783 1.270550 CCTGGTTGATTGACTGGTTGC 59.729 52.381 0.00 0.00 0.00 4.17
4683 7785 2.559668 CTGGTTGATTGACTGGTTGCAT 59.440 45.455 0.00 0.00 0.00 3.96
4684 7786 2.964464 TGGTTGATTGACTGGTTGCATT 59.036 40.909 0.00 0.00 0.00 3.56
4719 7821 4.422073 TGCTCCAATCGGTCAAGATAAT 57.578 40.909 0.00 0.00 0.00 1.28
4750 7852 2.327200 TCAGATCAAGGCTGATGCAG 57.673 50.000 0.00 0.00 42.60 4.41
4752 7854 2.237893 TCAGATCAAGGCTGATGCAGAA 59.762 45.455 0.00 0.00 42.60 3.02
4753 7855 2.614520 CAGATCAAGGCTGATGCAGAAG 59.385 50.000 0.00 0.00 42.60 2.85
4754 7856 1.334243 GATCAAGGCTGATGCAGAAGC 59.666 52.381 13.64 13.64 42.60 3.86
4785 7887 0.596577 GGAAGTTCAGGGCGTTTTCC 59.403 55.000 5.01 0.00 0.00 3.13
4789 7891 0.875059 GTTCAGGGCGTTTTCCTCTG 59.125 55.000 0.00 0.00 31.06 3.35
4793 7895 2.563427 GGCGTTTTCCTCTGCAGC 59.437 61.111 9.47 0.00 0.00 5.25
4798 7900 1.606480 CGTTTTCCTCTGCAGCTCTGA 60.606 52.381 9.47 0.00 0.00 3.27
4824 7926 4.021544 TCATGTACATTTTCCTTGGGTTGC 60.022 41.667 5.37 0.00 0.00 4.17
4827 7929 2.397597 ACATTTTCCTTGGGTTGCACT 58.602 42.857 0.00 0.00 0.00 4.40
4828 7930 2.365293 ACATTTTCCTTGGGTTGCACTC 59.635 45.455 0.00 0.00 0.00 3.51
4829 7931 1.408969 TTTTCCTTGGGTTGCACTCC 58.591 50.000 0.00 0.00 0.00 3.85
4830 7932 0.555769 TTTCCTTGGGTTGCACTCCT 59.444 50.000 7.00 0.00 0.00 3.69
4831 7933 0.178992 TTCCTTGGGTTGCACTCCTG 60.179 55.000 7.00 0.77 0.00 3.86
4832 7934 1.604593 CCTTGGGTTGCACTCCTGG 60.605 63.158 7.00 5.32 0.00 4.45
4833 7935 1.604593 CTTGGGTTGCACTCCTGGG 60.605 63.158 7.00 0.00 0.00 4.45
4834 7936 2.357593 CTTGGGTTGCACTCCTGGGT 62.358 60.000 7.00 0.00 0.00 4.51
4835 7937 1.943730 TTGGGTTGCACTCCTGGGTT 61.944 55.000 7.00 0.00 0.00 4.11
4836 7938 1.903404 GGGTTGCACTCCTGGGTTG 60.903 63.158 7.00 0.00 0.00 3.77
4837 7939 1.152756 GGTTGCACTCCTGGGTTGT 60.153 57.895 0.00 0.00 0.00 3.32
4838 7940 0.755327 GGTTGCACTCCTGGGTTGTT 60.755 55.000 0.00 0.00 0.00 2.83
4839 7941 1.111277 GTTGCACTCCTGGGTTGTTT 58.889 50.000 0.00 0.00 0.00 2.83
4840 7942 1.067060 GTTGCACTCCTGGGTTGTTTC 59.933 52.381 0.00 0.00 0.00 2.78
4841 7943 0.550914 TGCACTCCTGGGTTGTTTCT 59.449 50.000 0.00 0.00 0.00 2.52
4842 7944 1.239347 GCACTCCTGGGTTGTTTCTC 58.761 55.000 0.00 0.00 0.00 2.87
4843 7945 1.897560 CACTCCTGGGTTGTTTCTCC 58.102 55.000 0.00 0.00 0.00 3.71
4844 7946 1.421646 CACTCCTGGGTTGTTTCTCCT 59.578 52.381 0.00 0.00 0.00 3.69
4845 7947 2.136026 ACTCCTGGGTTGTTTCTCCTT 58.864 47.619 0.00 0.00 0.00 3.36
4846 7948 2.514160 ACTCCTGGGTTGTTTCTCCTTT 59.486 45.455 0.00 0.00 0.00 3.11
4847 7949 2.887152 CTCCTGGGTTGTTTCTCCTTTG 59.113 50.000 0.00 0.00 0.00 2.77
4848 7950 2.243736 TCCTGGGTTGTTTCTCCTTTGT 59.756 45.455 0.00 0.00 0.00 2.83
4849 7951 3.031013 CCTGGGTTGTTTCTCCTTTGTT 58.969 45.455 0.00 0.00 0.00 2.83
4850 7952 3.450817 CCTGGGTTGTTTCTCCTTTGTTT 59.549 43.478 0.00 0.00 0.00 2.83
4851 7953 4.081142 CCTGGGTTGTTTCTCCTTTGTTTT 60.081 41.667 0.00 0.00 0.00 2.43
4852 7954 5.079689 TGGGTTGTTTCTCCTTTGTTTTC 57.920 39.130 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 148 4.202567 ACTGTGCTGAAAATTAGAAGGGGA 60.203 41.667 0.00 0.00 0.00 4.81
195 198 6.545567 ACATTATGGTGCTGAATGATGGATA 58.454 36.000 0.00 0.00 35.12 2.59
207 210 2.562298 CACCCAACAACATTATGGTGCT 59.438 45.455 10.50 0.00 39.04 4.40
254 261 6.208797 TGGATCCTTCTTATATCTGGTACACG 59.791 42.308 14.23 0.00 0.00 4.49
266 273 8.558312 TCCGATAGTAGTATGGATCCTTCTTAT 58.442 37.037 14.23 0.00 0.00 1.73
267 274 7.925622 TCCGATAGTAGTATGGATCCTTCTTA 58.074 38.462 14.23 0.43 0.00 2.10
275 282 5.516059 TCACCTCCGATAGTAGTATGGAT 57.484 43.478 1.40 0.00 0.00 3.41
279 286 6.190346 AGACTTCACCTCCGATAGTAGTAT 57.810 41.667 0.00 0.00 0.00 2.12
285 292 4.720649 TGAAAGACTTCACCTCCGATAG 57.279 45.455 0.00 0.00 36.62 2.08
300 308 4.885325 GGTTTTAGGTTGGTGAGTGAAAGA 59.115 41.667 0.00 0.00 0.00 2.52
301 309 4.887655 AGGTTTTAGGTTGGTGAGTGAAAG 59.112 41.667 0.00 0.00 0.00 2.62
302 310 4.862371 AGGTTTTAGGTTGGTGAGTGAAA 58.138 39.130 0.00 0.00 0.00 2.69
303 311 4.165372 AGAGGTTTTAGGTTGGTGAGTGAA 59.835 41.667 0.00 0.00 0.00 3.18
328 338 4.216257 CCTAACTCTTGTGGTGGTTCAATG 59.784 45.833 0.00 0.00 0.00 2.82
330 340 3.815809 CCTAACTCTTGTGGTGGTTCAA 58.184 45.455 0.00 0.00 0.00 2.69
334 344 0.400594 GGCCTAACTCTTGTGGTGGT 59.599 55.000 0.00 0.00 0.00 4.16
342 359 0.613777 CCGAACAGGGCCTAACTCTT 59.386 55.000 5.28 0.00 35.97 2.85
353 370 1.141881 CTGGACGATCCCGAACAGG 59.858 63.158 0.00 0.00 38.42 4.00
354 371 1.519455 GCTGGACGATCCCGAACAG 60.519 63.158 0.00 0.00 41.82 3.16
355 372 1.945354 GAGCTGGACGATCCCGAACA 61.945 60.000 0.00 0.00 35.03 3.18
356 373 1.227002 GAGCTGGACGATCCCGAAC 60.227 63.158 0.00 0.00 35.03 3.95
357 374 2.423898 GGAGCTGGACGATCCCGAA 61.424 63.158 0.00 0.00 42.49 4.30
358 375 2.833582 GGAGCTGGACGATCCCGA 60.834 66.667 0.00 0.00 42.49 5.14
362 379 1.945354 TTCCGTGGAGCTGGACGATC 61.945 60.000 14.24 0.00 37.81 3.69
363 380 1.330655 ATTCCGTGGAGCTGGACGAT 61.331 55.000 14.24 0.29 37.81 3.73
364 381 0.681887 TATTCCGTGGAGCTGGACGA 60.682 55.000 14.24 0.00 37.81 4.20
365 382 0.527817 GTATTCCGTGGAGCTGGACG 60.528 60.000 7.06 7.06 32.95 4.79
366 383 0.527817 CGTATTCCGTGGAGCTGGAC 60.528 60.000 0.00 0.00 32.95 4.02
367 384 1.672854 CCGTATTCCGTGGAGCTGGA 61.673 60.000 0.00 0.00 33.66 3.86
368 385 1.227263 CCGTATTCCGTGGAGCTGG 60.227 63.158 0.00 0.00 33.66 4.85
369 386 1.227263 CCCGTATTCCGTGGAGCTG 60.227 63.158 0.00 0.00 33.66 4.24
370 387 1.380785 TCCCGTATTCCGTGGAGCT 60.381 57.895 0.00 0.00 32.97 4.09
371 388 1.067582 CTCCCGTATTCCGTGGAGC 59.932 63.158 0.00 0.00 42.80 4.70
373 390 2.777972 CGCTCCCGTATTCCGTGGA 61.778 63.158 0.00 0.00 35.49 4.02
374 391 2.279252 CGCTCCCGTATTCCGTGG 60.279 66.667 0.00 0.00 33.66 4.94
375 392 2.279252 CCGCTCCCGTATTCCGTG 60.279 66.667 0.00 0.00 33.66 4.94
376 393 2.440796 TCCGCTCCCGTATTCCGT 60.441 61.111 0.00 0.00 33.66 4.69
377 394 2.027169 GTCCGCTCCCGTATTCCG 59.973 66.667 0.00 0.00 0.00 4.30
378 395 2.027169 CGTCCGCTCCCGTATTCC 59.973 66.667 0.00 0.00 0.00 3.01
379 396 2.027169 CCGTCCGCTCCCGTATTC 59.973 66.667 0.00 0.00 0.00 1.75
380 397 2.440796 TCCGTCCGCTCCCGTATT 60.441 61.111 0.00 0.00 0.00 1.89
381 398 2.905880 CTCCGTCCGCTCCCGTAT 60.906 66.667 0.00 0.00 0.00 3.06
391 408 3.423154 CAAAGTGGCGCTCCGTCC 61.423 66.667 7.64 0.00 34.14 4.79
392 409 3.423154 CCAAAGTGGCGCTCCGTC 61.423 66.667 7.64 0.00 34.14 4.79
401 418 0.178992 TCTGGGAGTTGCCAAAGTGG 60.179 55.000 0.00 0.00 41.55 4.00
402 419 1.691196 TTCTGGGAGTTGCCAAAGTG 58.309 50.000 0.00 0.00 38.95 3.16
403 420 2.452600 TTTCTGGGAGTTGCCAAAGT 57.547 45.000 0.00 0.00 38.95 2.66
404 421 4.615912 CGTATTTTCTGGGAGTTGCCAAAG 60.616 45.833 0.00 0.00 38.95 2.77
405 422 3.254657 CGTATTTTCTGGGAGTTGCCAAA 59.745 43.478 0.00 0.00 38.95 3.28
406 423 2.817258 CGTATTTTCTGGGAGTTGCCAA 59.183 45.455 0.00 0.00 38.95 4.52
407 424 2.432444 CGTATTTTCTGGGAGTTGCCA 58.568 47.619 0.00 0.00 38.95 4.92
408 425 1.132453 GCGTATTTTCTGGGAGTTGCC 59.868 52.381 0.00 0.00 0.00 4.52
409 426 2.084546 AGCGTATTTTCTGGGAGTTGC 58.915 47.619 0.00 0.00 0.00 4.17
410 427 2.159517 GCAGCGTATTTTCTGGGAGTTG 60.160 50.000 0.00 0.00 0.00 3.16
411 428 2.084546 GCAGCGTATTTTCTGGGAGTT 58.915 47.619 0.00 0.00 0.00 3.01
412 429 1.739067 GCAGCGTATTTTCTGGGAGT 58.261 50.000 0.00 0.00 0.00 3.85
413 430 0.652592 CGCAGCGTATTTTCTGGGAG 59.347 55.000 6.65 0.00 43.35 4.30
414 431 0.742990 CCGCAGCGTATTTTCTGGGA 60.743 55.000 15.05 0.00 43.35 4.37
415 432 1.714899 CCCGCAGCGTATTTTCTGGG 61.715 60.000 15.05 0.00 41.26 4.45
416 433 1.721487 CCCGCAGCGTATTTTCTGG 59.279 57.895 15.05 0.55 0.00 3.86
417 434 1.062525 GCCCGCAGCGTATTTTCTG 59.937 57.895 15.05 0.00 0.00 3.02
418 435 2.112815 GGCCCGCAGCGTATTTTCT 61.113 57.895 15.05 0.00 45.17 2.52
419 436 2.407616 GGCCCGCAGCGTATTTTC 59.592 61.111 15.05 0.00 45.17 2.29
420 437 3.505184 CGGCCCGCAGCGTATTTT 61.505 61.111 15.05 0.00 45.17 1.82
442 459 4.527583 CTCCTGGAGCAGCCGAGC 62.528 72.222 11.42 0.00 40.66 5.03
473 490 4.742201 TGTTCGGCAGCTCTCCGC 62.742 66.667 16.83 2.19 46.05 5.54
475 492 2.125350 CCTGTTCGGCAGCTCTCC 60.125 66.667 0.00 0.00 43.71 3.71
484 501 1.737363 GCAGAGTAAGAGCCTGTTCGG 60.737 57.143 0.00 0.00 0.00 4.30
485 502 1.067565 TGCAGAGTAAGAGCCTGTTCG 60.068 52.381 0.00 0.00 0.00 3.95
486 503 2.751166 TGCAGAGTAAGAGCCTGTTC 57.249 50.000 0.00 0.00 0.00 3.18
487 504 2.370189 ACTTGCAGAGTAAGAGCCTGTT 59.630 45.455 1.90 0.00 36.65 3.16
488 505 1.974236 ACTTGCAGAGTAAGAGCCTGT 59.026 47.619 1.90 0.00 36.65 4.00
489 506 2.758736 ACTTGCAGAGTAAGAGCCTG 57.241 50.000 1.90 0.00 36.65 4.85
490 507 2.634940 TGAACTTGCAGAGTAAGAGCCT 59.365 45.455 1.90 0.00 37.72 4.58
491 508 3.045601 TGAACTTGCAGAGTAAGAGCC 57.954 47.619 1.90 0.00 37.72 4.70
492 509 5.619625 ATTTGAACTTGCAGAGTAAGAGC 57.380 39.130 1.90 0.00 37.72 4.09
493 510 6.348868 GGGAATTTGAACTTGCAGAGTAAGAG 60.349 42.308 1.90 0.00 37.72 2.85
494 511 5.473504 GGGAATTTGAACTTGCAGAGTAAGA 59.526 40.000 1.90 0.00 37.72 2.10
495 512 5.241506 TGGGAATTTGAACTTGCAGAGTAAG 59.758 40.000 2.60 0.00 37.72 2.34
496 513 5.136828 TGGGAATTTGAACTTGCAGAGTAA 58.863 37.500 2.60 0.00 37.72 2.24
497 514 4.724399 TGGGAATTTGAACTTGCAGAGTA 58.276 39.130 2.60 0.00 37.72 2.59
498 515 3.565307 TGGGAATTTGAACTTGCAGAGT 58.435 40.909 0.00 0.00 41.47 3.24
499 516 3.613432 GCTGGGAATTTGAACTTGCAGAG 60.613 47.826 0.00 0.00 0.00 3.35
500 517 2.297033 GCTGGGAATTTGAACTTGCAGA 59.703 45.455 0.00 0.00 0.00 4.26
501 518 2.611224 GGCTGGGAATTTGAACTTGCAG 60.611 50.000 0.00 0.00 0.00 4.41
502 519 1.344114 GGCTGGGAATTTGAACTTGCA 59.656 47.619 0.00 0.00 0.00 4.08
503 520 1.620323 AGGCTGGGAATTTGAACTTGC 59.380 47.619 0.00 0.00 0.00 4.01
504 521 3.160269 AGAGGCTGGGAATTTGAACTTG 58.840 45.455 0.00 0.00 0.00 3.16
505 522 3.532641 AGAGGCTGGGAATTTGAACTT 57.467 42.857 0.00 0.00 0.00 2.66
506 523 3.425659 GAAGAGGCTGGGAATTTGAACT 58.574 45.455 0.00 0.00 0.00 3.01
507 524 2.493675 GGAAGAGGCTGGGAATTTGAAC 59.506 50.000 0.00 0.00 0.00 3.18
508 525 2.109834 TGGAAGAGGCTGGGAATTTGAA 59.890 45.455 0.00 0.00 0.00 2.69
509 526 1.710244 TGGAAGAGGCTGGGAATTTGA 59.290 47.619 0.00 0.00 0.00 2.69
510 527 2.097825 CTGGAAGAGGCTGGGAATTTG 58.902 52.381 0.00 0.00 34.07 2.32
511 528 1.618074 GCTGGAAGAGGCTGGGAATTT 60.618 52.381 0.00 0.00 34.07 1.82
512 529 0.033699 GCTGGAAGAGGCTGGGAATT 60.034 55.000 0.00 0.00 34.07 2.17
513 530 1.611965 GCTGGAAGAGGCTGGGAAT 59.388 57.895 0.00 0.00 34.07 3.01
514 531 2.606587 GGCTGGAAGAGGCTGGGAA 61.607 63.158 0.00 0.00 44.09 3.97
515 532 3.011517 GGCTGGAAGAGGCTGGGA 61.012 66.667 0.00 0.00 44.09 4.37
516 533 4.120755 GGGCTGGAAGAGGCTGGG 62.121 72.222 0.00 0.00 46.72 4.45
517 534 3.013932 AGGGCTGGAAGAGGCTGG 61.014 66.667 0.00 0.00 46.72 4.85
518 535 2.254737 CTCAGGGCTGGAAGAGGCTG 62.255 65.000 0.00 0.00 46.72 4.85
519 536 1.994507 CTCAGGGCTGGAAGAGGCT 60.995 63.158 0.00 0.00 46.72 4.58
520 537 2.297129 ACTCAGGGCTGGAAGAGGC 61.297 63.158 0.00 0.00 46.83 4.70
521 538 1.601171 CACTCAGGGCTGGAAGAGG 59.399 63.158 0.00 0.00 34.07 3.69
522 539 1.078567 GCACTCAGGGCTGGAAGAG 60.079 63.158 0.00 0.00 34.07 2.85
523 540 2.596851 GGCACTCAGGGCTGGAAGA 61.597 63.158 0.00 0.00 34.07 2.87
524 541 2.045536 GGCACTCAGGGCTGGAAG 60.046 66.667 0.00 0.00 0.00 3.46
525 542 2.530151 AGGCACTCAGGGCTGGAA 60.530 61.111 0.00 0.00 42.76 3.53
529 546 0.401105 ATATCCAGGCACTCAGGGCT 60.401 55.000 0.00 0.00 45.66 5.19
530 547 0.475906 AATATCCAGGCACTCAGGGC 59.524 55.000 0.00 0.00 34.60 5.19
531 548 1.770658 TGAATATCCAGGCACTCAGGG 59.229 52.381 0.00 0.00 34.60 4.45
532 549 2.437281 ACTGAATATCCAGGCACTCAGG 59.563 50.000 0.00 0.00 34.60 3.86
533 550 3.834489 ACTGAATATCCAGGCACTCAG 57.166 47.619 0.00 0.00 34.60 3.35
534 551 5.366477 TGAATACTGAATATCCAGGCACTCA 59.634 40.000 0.00 0.00 34.60 3.41
584 601 2.891307 TAGAAGGAGGGGGAAGGCCG 62.891 65.000 0.00 0.00 33.83 6.13
589 606 1.622725 GCTGAGTAGAAGGAGGGGGAA 60.623 57.143 0.00 0.00 0.00 3.97
677 694 6.370442 ACTTTGTGCATGCTTCGTAGTTATAA 59.630 34.615 20.33 0.00 0.00 0.98
683 700 4.864916 ATACTTTGTGCATGCTTCGTAG 57.135 40.909 20.33 11.79 0.00 3.51
773 1336 2.169352 CTGGTATACAGCAGGCTCTGTT 59.831 50.000 19.68 12.47 44.26 3.16
787 1350 4.165372 GGAAGGTTCCATTGACCTGGTATA 59.835 45.833 0.00 0.00 46.60 1.47
788 1351 3.053619 GGAAGGTTCCATTGACCTGGTAT 60.054 47.826 0.00 0.00 46.60 2.73
835 1398 4.338118 TGTGAGGTCAAAAGTTTGTCATCC 59.662 41.667 11.27 7.25 36.62 3.51
874 1437 6.713450 GGTTTTTAGGTTGGTGAGTATTCAGA 59.287 38.462 0.00 0.00 32.98 3.27
970 1534 0.106419 TTGGAAGAACACCCACCCAC 60.106 55.000 0.00 0.00 31.11 4.61
971 1535 0.184933 CTTGGAAGAACACCCACCCA 59.815 55.000 0.00 0.00 31.11 4.51
972 1536 1.179174 GCTTGGAAGAACACCCACCC 61.179 60.000 0.00 0.00 31.11 4.61
973 1537 0.178990 AGCTTGGAAGAACACCCACC 60.179 55.000 0.00 0.00 31.11 4.61
974 1538 0.954452 CAGCTTGGAAGAACACCCAC 59.046 55.000 0.00 0.00 31.11 4.61
980 1544 0.813821 GGATGGCAGCTTGGAAGAAC 59.186 55.000 1.50 0.00 0.00 3.01
1040 1607 0.321919 ATCAACGGCTGTGCAGACAT 60.322 50.000 0.00 0.00 35.77 3.06
1181 1757 6.405953 GCTGTACCATATGGCTATGTAGTAGG 60.406 46.154 22.18 1.96 39.32 3.18
1544 2123 2.503061 CTGGAGATGGGTCTGCCG 59.497 66.667 0.00 0.00 41.68 5.69
1884 2490 4.529219 TATGCCCCACAGAGCGCG 62.529 66.667 0.00 0.00 0.00 6.86
1937 2552 1.518903 GCTGAACCCCTTGACACAGC 61.519 60.000 0.00 0.00 42.44 4.40
2181 2799 4.143115 CCAGTGTGATTGTAAGTGTAAGCG 60.143 45.833 0.00 0.00 0.00 4.68
2211 2829 2.035626 AGGTCCCCGTGCCAAATG 59.964 61.111 0.00 0.00 0.00 2.32
2212 2830 2.355115 GAGGTCCCCGTGCCAAAT 59.645 61.111 0.00 0.00 0.00 2.32
2220 2838 1.514553 GAGGTTAACGAGGTCCCCG 59.485 63.158 0.00 0.00 0.00 5.73
2311 2935 3.509442 TGATCACCATCTTGGGCTTTTT 58.491 40.909 0.00 0.00 43.37 1.94
2331 2955 0.806868 CACCAGCAGCTACACCAATG 59.193 55.000 0.00 0.00 0.00 2.82
2411 3079 2.808543 GCATTCTCGGATACCCAATGAC 59.191 50.000 0.00 0.00 29.51 3.06
2419 3087 2.300152 TCATCCCAGCATTCTCGGATAC 59.700 50.000 0.00 0.00 38.10 2.24
2439 3107 2.279517 CCAGTCGGTGCGGCTATC 60.280 66.667 0.00 0.00 40.90 2.08
2445 3113 3.114616 CTGAAGCCAGTCGGTGCG 61.115 66.667 0.00 0.00 35.70 5.34
2446 3114 2.167398 TACCTGAAGCCAGTCGGTGC 62.167 60.000 0.00 0.00 38.74 5.01
2447 3115 0.389948 GTACCTGAAGCCAGTCGGTG 60.390 60.000 0.00 0.00 38.74 4.94
2456 3124 6.203723 GTCCAATAGATCATTGTACCTGAAGC 59.796 42.308 13.37 0.00 42.22 3.86
2502 3170 3.303001 GCGTTGATAGATCAAGAAGCAGC 60.303 47.826 16.16 8.53 46.44 5.25
2570 3238 3.761897 TGAACCATACCAAAACCTCCTG 58.238 45.455 0.00 0.00 0.00 3.86
2655 3327 5.604231 TCCCTATGCAAGACAAGATACTCAT 59.396 40.000 0.00 0.00 0.00 2.90
3093 3940 1.480954 TCCCGGTGAACTATCTTCAGC 59.519 52.381 0.00 2.79 41.86 4.26
3171 4018 3.476552 TCCAAATATCTTTGCTAGGCCG 58.523 45.455 0.00 0.00 40.39 6.13
3175 4022 5.310409 TCCCCTCCAAATATCTTTGCTAG 57.690 43.478 0.00 0.00 40.39 3.42
3258 4105 2.353269 TGTCCTGTGTGCGTTTTAACTG 59.647 45.455 0.00 0.00 0.00 3.16
3266 4113 1.388547 ATTTTGTGTCCTGTGTGCGT 58.611 45.000 0.00 0.00 0.00 5.24
3267 4114 2.490328 AATTTTGTGTCCTGTGTGCG 57.510 45.000 0.00 0.00 0.00 5.34
3268 4115 7.598493 ACATAATTAATTTTGTGTCCTGTGTGC 59.402 33.333 19.47 0.00 32.12 4.57
3269 4116 9.474920 AACATAATTAATTTTGTGTCCTGTGTG 57.525 29.630 20.47 0.00 33.33 3.82
3292 4154 6.052360 TGTATCCGCTGCAATAATAAGAACA 58.948 36.000 0.00 0.00 0.00 3.18
3293 4155 6.539649 TGTATCCGCTGCAATAATAAGAAC 57.460 37.500 0.00 0.00 0.00 3.01
3294 4156 6.710295 ACATGTATCCGCTGCAATAATAAGAA 59.290 34.615 0.00 0.00 0.00 2.52
3299 4161 3.433274 CGACATGTATCCGCTGCAATAAT 59.567 43.478 0.00 0.00 0.00 1.28
3416 4286 4.767255 CGGAGGTGCAGGAGCCAC 62.767 72.222 0.00 0.00 41.13 5.01
3428 4298 4.357996 GAGGTAAACGTATTTCTCGGAGG 58.642 47.826 4.96 0.00 0.00 4.30
3469 4342 4.741676 AGAGTTTACTAACGTTGGTTCGTG 59.258 41.667 22.76 0.93 43.38 4.35
3471 4344 4.375706 GCAGAGTTTACTAACGTTGGTTCG 60.376 45.833 22.76 10.88 39.31 3.95
3479 4352 1.057285 CACGCGCAGAGTTTACTAACG 59.943 52.381 5.73 0.00 39.58 3.18
3505 4378 2.158928 TCGGTTATTACGGTGGGGATTG 60.159 50.000 0.00 0.00 0.00 2.67
3512 4387 4.339429 CAAATTGCTCGGTTATTACGGTG 58.661 43.478 0.00 0.00 0.00 4.94
3515 4390 4.868450 TCCAAATTGCTCGGTTATTACG 57.132 40.909 0.00 0.00 0.00 3.18
3516 4391 9.016623 GTAAATTCCAAATTGCTCGGTTATTAC 57.983 33.333 0.00 0.00 0.00 1.89
3519 4394 6.569780 GGTAAATTCCAAATTGCTCGGTTAT 58.430 36.000 0.00 0.00 0.00 1.89
3520 4395 5.392165 CGGTAAATTCCAAATTGCTCGGTTA 60.392 40.000 0.00 0.00 0.00 2.85
3524 4399 4.349663 TCGGTAAATTCCAAATTGCTCG 57.650 40.909 0.00 0.00 0.00 5.03
3525 4400 5.519927 CCAATCGGTAAATTCCAAATTGCTC 59.480 40.000 0.00 0.00 33.08 4.26
3526 4401 5.418676 CCAATCGGTAAATTCCAAATTGCT 58.581 37.500 0.00 0.00 33.08 3.91
3527 4402 4.570369 CCCAATCGGTAAATTCCAAATTGC 59.430 41.667 0.00 0.00 33.08 3.56
3544 4429 0.550914 TCCCATACCTGCACCCAATC 59.449 55.000 0.00 0.00 0.00 2.67
3548 4433 2.193248 GCTCCCATACCTGCACCC 59.807 66.667 0.00 0.00 0.00 4.61
3572 4457 1.134401 GCTCGATGACATTTCCCCTGA 60.134 52.381 0.00 0.00 0.00 3.86
3615 4500 1.003580 TGTTCAGTGGGAGAAGGATGC 59.996 52.381 0.00 0.00 0.00 3.91
3652 4537 2.151202 CACACACAGTAGCCCGATTTT 58.849 47.619 0.00 0.00 0.00 1.82
3777 4662 1.803334 TATCACTGCACCCGTTCAAC 58.197 50.000 0.00 0.00 0.00 3.18
3783 4668 2.905075 TCTGAATTATCACTGCACCCG 58.095 47.619 0.00 0.00 0.00 5.28
3786 4671 3.242543 CCGCTTCTGAATTATCACTGCAC 60.243 47.826 0.00 0.00 0.00 4.57
3836 4724 1.522580 GCTCATCTTGGGTCGAGCC 60.523 63.158 26.70 26.70 44.06 4.70
3872 4760 5.959618 AATTAACACTAGTCCAAACTGGC 57.040 39.130 0.00 0.00 37.50 4.85
3892 4781 6.270231 AGGTGGTCTCTAAACAGACTGTAAAT 59.730 38.462 8.91 1.19 42.31 1.40
3918 4811 8.671921 CATATATGACTTTTCATCATAGCCACC 58.328 37.037 6.92 0.00 41.87 4.61
3955 4848 6.212888 AGCAAAACTGAAACTGAAGACAAT 57.787 33.333 0.00 0.00 0.00 2.71
3973 4866 0.179059 TGACGCCTCTTCACAGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
3985 4878 2.590092 GGCAATACCCTGACGCCT 59.410 61.111 0.00 0.00 39.73 5.52
3989 4882 1.029947 CCCAACGGCAATACCCTGAC 61.030 60.000 0.00 0.00 33.26 3.51
3991 4884 0.322997 TTCCCAACGGCAATACCCTG 60.323 55.000 0.00 0.00 33.26 4.45
3992 4885 0.406361 TTTCCCAACGGCAATACCCT 59.594 50.000 0.00 0.00 33.26 4.34
3993 4886 1.258676 TTTTCCCAACGGCAATACCC 58.741 50.000 0.00 0.00 33.26 3.69
4040 4933 0.321653 AGTTGCTCAAGGGTAAGGCG 60.322 55.000 0.00 0.00 0.00 5.52
4042 4935 1.168714 GCAGTTGCTCAAGGGTAAGG 58.831 55.000 0.00 0.00 38.21 2.69
4043 4936 1.896220 TGCAGTTGCTCAAGGGTAAG 58.104 50.000 5.62 0.00 42.66 2.34
4044 4937 2.584835 ATGCAGTTGCTCAAGGGTAA 57.415 45.000 5.62 0.00 42.66 2.85
4045 4938 2.557924 CAAATGCAGTTGCTCAAGGGTA 59.442 45.455 14.60 0.00 42.66 3.69
4046 4939 1.342174 CAAATGCAGTTGCTCAAGGGT 59.658 47.619 14.60 0.00 42.66 4.34
4047 4940 1.342174 ACAAATGCAGTTGCTCAAGGG 59.658 47.619 25.59 0.87 42.66 3.95
4087 4982 6.992063 ATTTGAATGAAGTTAGAGCGTCAT 57.008 33.333 0.00 0.00 38.78 3.06
4118 5013 4.839121 TCCGAAGCATTGTACCTGTATTT 58.161 39.130 0.00 0.00 0.00 1.40
4125 5020 4.883083 TCTATGATCCGAAGCATTGTACC 58.117 43.478 0.00 0.00 0.00 3.34
4166 5061 7.389330 TCATTTTATTTCTTCGTTGCAGGAGTA 59.611 33.333 0.00 0.00 0.00 2.59
4200 5095 4.262164 GGTACCACCGAGAAGTTGTTTCTA 60.262 45.833 7.15 0.00 46.12 2.10
4217 5112 2.243810 GGGTTGCAAAGATTGGTACCA 58.756 47.619 11.60 11.60 0.00 3.25
4222 5117 2.810439 TTTCGGGTTGCAAAGATTGG 57.190 45.000 0.00 0.00 0.00 3.16
4232 5127 2.166254 AGCCTTGCAATATTTCGGGTTG 59.834 45.455 0.00 0.00 0.00 3.77
4236 5131 2.719798 CGAAGCCTTGCAATATTTCGG 58.280 47.619 21.70 11.89 35.20 4.30
4267 5163 1.325037 CACGCGTTTTATATGACCGCA 59.675 47.619 10.22 0.00 44.23 5.69
4269 5165 1.332552 GGCACGCGTTTTATATGACCG 60.333 52.381 10.22 0.00 0.00 4.79
4271 5167 3.392769 TTGGCACGCGTTTTATATGAC 57.607 42.857 10.22 0.00 0.00 3.06
4272 5168 4.154375 TCTTTTGGCACGCGTTTTATATGA 59.846 37.500 10.22 0.51 0.00 2.15
4273 5169 4.407818 TCTTTTGGCACGCGTTTTATATG 58.592 39.130 10.22 0.00 0.00 1.78
4274 5170 4.688511 TCTTTTGGCACGCGTTTTATAT 57.311 36.364 10.22 0.00 0.00 0.86
4275 5171 4.220572 GTTCTTTTGGCACGCGTTTTATA 58.779 39.130 10.22 0.00 0.00 0.98
4277 5173 2.159421 TGTTCTTTTGGCACGCGTTTTA 60.159 40.909 10.22 0.00 0.00 1.52
4320 7314 1.303236 CCCCGCATCCACTGAAACA 60.303 57.895 0.00 0.00 0.00 2.83
4327 7321 4.460683 TACGCACCCCGCATCCAC 62.461 66.667 0.00 0.00 42.60 4.02
4333 7327 3.366739 AAGTAGCTACGCACCCCGC 62.367 63.158 17.99 0.00 41.76 6.13
4342 7336 6.237969 GCTAGTTCATTGCTTCAAGTAGCTAC 60.238 42.308 16.43 16.43 42.28 3.58
4359 7353 1.001633 GTTCTTCCGTGGGCTAGTTCA 59.998 52.381 0.00 0.00 0.00 3.18
4372 7369 0.608640 TCCTCAAGCCGAGTTCTTCC 59.391 55.000 0.49 0.00 40.48 3.46
4381 7378 2.610232 CCAAAACCAAATCCTCAAGCCG 60.610 50.000 0.00 0.00 0.00 5.52
4383 7380 2.368548 ACCCAAAACCAAATCCTCAAGC 59.631 45.455 0.00 0.00 0.00 4.01
4401 7398 6.339587 TGAAATATTTTGTCACTTGGACCC 57.660 37.500 1.43 0.00 46.38 4.46
4410 7407 8.690884 TGGACAAGAACTTGAAATATTTTGTCA 58.309 29.630 19.35 6.12 42.84 3.58
4411 7408 9.696917 ATGGACAAGAACTTGAAATATTTTGTC 57.303 29.630 19.35 13.38 42.93 3.18
4424 7526 5.241728 GCTTAGTTTGGATGGACAAGAACTT 59.758 40.000 0.00 0.00 0.00 2.66
4432 7534 1.065709 TCCCGCTTAGTTTGGATGGAC 60.066 52.381 0.00 0.00 0.00 4.02
4445 7547 1.831106 TGTGATACATCTGTCCCGCTT 59.169 47.619 0.00 0.00 0.00 4.68
4478 7580 8.678199 CCTAGGAAAAAGCTAATCGATCTTTTT 58.322 33.333 24.68 24.68 33.72 1.94
4479 7581 7.829706 ACCTAGGAAAAAGCTAATCGATCTTTT 59.170 33.333 17.98 14.35 33.72 2.27
4480 7582 7.281100 CACCTAGGAAAAAGCTAATCGATCTTT 59.719 37.037 17.98 1.24 0.00 2.52
4481 7583 6.763610 CACCTAGGAAAAAGCTAATCGATCTT 59.236 38.462 17.98 0.00 0.00 2.40
4482 7584 6.098409 TCACCTAGGAAAAAGCTAATCGATCT 59.902 38.462 17.98 0.00 0.00 2.75
4483 7585 6.201234 GTCACCTAGGAAAAAGCTAATCGATC 59.799 42.308 17.98 0.00 0.00 3.69
4484 7586 6.049790 GTCACCTAGGAAAAAGCTAATCGAT 58.950 40.000 17.98 0.00 0.00 3.59
4486 7588 5.175859 TGTCACCTAGGAAAAAGCTAATCG 58.824 41.667 17.98 0.00 0.00 3.34
4487 7589 6.599638 ACATGTCACCTAGGAAAAAGCTAATC 59.400 38.462 17.98 0.00 0.00 1.75
4488 7590 6.485171 ACATGTCACCTAGGAAAAAGCTAAT 58.515 36.000 17.98 0.00 0.00 1.73
4489 7591 5.876357 ACATGTCACCTAGGAAAAAGCTAA 58.124 37.500 17.98 0.00 0.00 3.09
4490 7592 5.499004 ACATGTCACCTAGGAAAAAGCTA 57.501 39.130 17.98 0.00 0.00 3.32
4491 7593 4.373156 ACATGTCACCTAGGAAAAAGCT 57.627 40.909 17.98 0.00 0.00 3.74
4492 7594 6.759497 ATTACATGTCACCTAGGAAAAAGC 57.241 37.500 17.98 0.00 0.00 3.51
4493 7595 8.237267 GTCAATTACATGTCACCTAGGAAAAAG 58.763 37.037 17.98 3.08 0.00 2.27
4497 7599 5.249622 TGGTCAATTACATGTCACCTAGGAA 59.750 40.000 17.98 0.00 0.00 3.36
4498 7600 4.780554 TGGTCAATTACATGTCACCTAGGA 59.219 41.667 17.98 0.00 0.00 2.94
4500 7602 4.566759 CGTGGTCAATTACATGTCACCTAG 59.433 45.833 0.00 0.00 0.00 3.02
4501 7603 4.020928 ACGTGGTCAATTACATGTCACCTA 60.021 41.667 0.00 0.00 31.57 3.08
4503 7605 3.071479 ACGTGGTCAATTACATGTCACC 58.929 45.455 0.00 2.79 31.57 4.02
4569 7671 9.407380 TGTTTCCTGCAACAATATATAGATGTT 57.593 29.630 9.70 9.70 37.76 2.71
4570 7672 8.978874 TGTTTCCTGCAACAATATATAGATGT 57.021 30.769 0.00 0.00 33.60 3.06
4572 7674 9.236006 GGATGTTTCCTGCAACAATATATAGAT 57.764 33.333 0.00 0.00 40.07 1.98
4573 7675 7.665559 GGGATGTTTCCTGCAACAATATATAGA 59.334 37.037 0.00 0.00 40.07 1.98
4574 7676 7.094205 GGGGATGTTTCCTGCAACAATATATAG 60.094 40.741 0.00 0.00 40.07 1.31
4575 7677 6.719370 GGGGATGTTTCCTGCAACAATATATA 59.281 38.462 0.00 0.00 40.07 0.86
4576 7678 5.539955 GGGGATGTTTCCTGCAACAATATAT 59.460 40.000 0.00 0.00 40.07 0.86
4632 7734 3.511934 TGGGGTTTTGGAAATGTAATCGG 59.488 43.478 0.00 0.00 0.00 4.18
4637 7739 6.292150 GTTTTGATGGGGTTTTGGAAATGTA 58.708 36.000 0.00 0.00 0.00 2.29
4658 7760 3.312736 ACCAGTCAATCAACCAGGTTT 57.687 42.857 0.44 0.00 0.00 3.27
4677 7779 4.150451 GCAATCAACAGGTGTTAATGCAAC 59.850 41.667 15.97 0.00 38.63 4.17
4681 7783 4.218200 TGGAGCAATCAACAGGTGTTAATG 59.782 41.667 0.00 0.00 36.32 1.90
4683 7785 3.826524 TGGAGCAATCAACAGGTGTTAA 58.173 40.909 0.00 0.00 36.32 2.01
4684 7786 3.500448 TGGAGCAATCAACAGGTGTTA 57.500 42.857 0.00 0.00 36.32 2.41
4712 7814 9.623000 TGATCTGATCAATGACACAATTATCTT 57.377 29.630 17.56 0.00 36.11 2.40
4750 7852 3.830192 CCCAGCGCCCAATGCTTC 61.830 66.667 2.29 0.00 41.72 3.86
4752 7854 4.365111 TTCCCAGCGCCCAATGCT 62.365 61.111 2.29 0.00 45.31 3.79
4753 7855 3.830192 CTTCCCAGCGCCCAATGC 61.830 66.667 2.29 0.00 0.00 3.56
4754 7856 1.937546 GAACTTCCCAGCGCCCAATG 61.938 60.000 2.29 0.00 0.00 2.82
4755 7857 1.678970 GAACTTCCCAGCGCCCAAT 60.679 57.895 2.29 0.00 0.00 3.16
4756 7858 2.282180 GAACTTCCCAGCGCCCAA 60.282 61.111 2.29 0.00 0.00 4.12
4757 7859 3.551496 CTGAACTTCCCAGCGCCCA 62.551 63.158 2.29 0.00 0.00 5.36
4758 7860 2.747855 CTGAACTTCCCAGCGCCC 60.748 66.667 2.29 0.00 0.00 6.13
4759 7861 2.747855 CCTGAACTTCCCAGCGCC 60.748 66.667 2.29 0.00 0.00 6.53
4760 7862 2.747855 CCCTGAACTTCCCAGCGC 60.748 66.667 0.00 0.00 0.00 5.92
4761 7863 2.747855 GCCCTGAACTTCCCAGCG 60.748 66.667 0.00 0.00 0.00 5.18
4762 7864 2.747855 CGCCCTGAACTTCCCAGC 60.748 66.667 0.00 0.00 0.00 4.85
4763 7865 0.537371 AAACGCCCTGAACTTCCCAG 60.537 55.000 0.00 0.00 0.00 4.45
4764 7866 0.106419 AAAACGCCCTGAACTTCCCA 60.106 50.000 0.00 0.00 0.00 4.37
4767 7869 1.535896 GAGGAAAACGCCCTGAACTTC 59.464 52.381 0.00 0.00 33.36 3.01
4785 7887 2.205911 CATGACATCAGAGCTGCAGAG 58.794 52.381 20.43 3.58 0.00 3.35
4789 7891 2.897436 TGTACATGACATCAGAGCTGC 58.103 47.619 0.00 0.00 31.20 5.25
4811 7913 0.555769 AGGAGTGCAACCCAAGGAAA 59.444 50.000 8.18 0.00 37.80 3.13
4819 7921 0.755327 AACAACCCAGGAGTGCAACC 60.755 55.000 3.31 3.31 37.80 3.77
4824 7926 1.421646 AGGAGAAACAACCCAGGAGTG 59.578 52.381 0.00 0.00 0.00 3.51
4827 7929 2.243736 ACAAAGGAGAAACAACCCAGGA 59.756 45.455 0.00 0.00 0.00 3.86
4828 7930 2.666317 ACAAAGGAGAAACAACCCAGG 58.334 47.619 0.00 0.00 0.00 4.45
4829 7931 4.736126 AAACAAAGGAGAAACAACCCAG 57.264 40.909 0.00 0.00 0.00 4.45
4830 7932 5.079689 GAAAACAAAGGAGAAACAACCCA 57.920 39.130 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.