AutoCloner

Multiple sequence alignment - TraesCS5A01G433200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G433200	chr5A	100.000	3473	0	0	1	3473	617098323	617094851	0.000000e+00	6414.0
1	TraesCS5A01G433200	chr5A	90.612	1747	140	12	763	2489	617123928	617122186	0.000000e+00	2296.0
2	TraesCS5A01G433200	chr5A	82.328	713	88	29	9	706	617125475	617124786	5.000000e-163	584.0
3	TraesCS5A01G433200	chr5A	89.055	402	44	0	2088	2489	617111674	617111273	1.860000e-137	499.0
4	TraesCS5A01G433200	chr5A	79.513	493	64	14	2740	3229	631746062	631746520	2.010000e-82	316.0
5	TraesCS5A01G433200	chr5D	87.535	2527	251	43	3	2490	494080176	494077675	0.000000e+00	2863.0
6	TraesCS5A01G433200	chr5D	92.438	1772	115	4	984	2739	493912428	493914196	0.000000e+00	2512.0
7	TraesCS5A01G433200	chr5D	92.526	1057	79	0	1434	2490	494060016	494058960	0.000000e+00	1515.0
8	TraesCS5A01G433200	chr5D	82.120	1566	212	42	958	2474	542106089	542107635	0.000000e+00	1279.0
9	TraesCS5A01G433200	chr5D	81.928	664	59	30	303	947	494066923	494066302	4.000000e-139	505.0
10	TraesCS5A01G433200	chr5D	83.484	442	26	12	303	730	493911330	493911738	5.480000e-98	368.0
11	TraesCS5A01G433200	chr5D	90.952	210	17	2	98	306	494067005	494067213	7.340000e-72	281.0
12	TraesCS5A01G433200	chr5D	90.821	207	17	2	101	306	493901524	493901319	3.410000e-70	276.0
13	TraesCS5A01G433200	chr5D	94.059	101	6	0	1	101	494073028	494072928	1.670000e-33	154.0
14	TraesCS5A01G433200	chr5D	88.119	101	9	2	1	101	493844005	493844102	2.190000e-22	117.0
15	TraesCS5A01G433200	chr5D	85.938	64	8	1	2519	2582	494076689	494076627	2.240000e-07	67.6
16	TraesCS5A01G433200	chr5D	90.196	51	4	1	2519	2569	493842131	493842180	8.050000e-07	65.8
17	TraesCS5A01G433200	chr5B	89.843	2225	147	28	418	2575	610108553	610106341	0.000000e+00	2784.0
18	TraesCS5A01G433200	chr5B	89.170	1939	138	36	836	2741	610206100	610204201	0.000000e+00	2351.0
19	TraesCS5A01G433200	chr5B	92.391	1656	107	4	854	2490	610282588	610280933	0.000000e+00	2342.0
20	TraesCS5A01G433200	chr5B	82.985	335	34	13	456	773	610283702	610283374	7.340000e-72	281.0
21	TraesCS5A01G433200	chr5B	81.564	358	46	12	3	354	610109992	610109649	9.490000e-71	278.0
22	TraesCS5A01G433200	chr5B	84.871	271	26	9	418	687	610206575	610206319	3.440000e-65	259.0
23	TraesCS5A01G433200	chr5B	91.195	159	14	0	2581	2739	610106078	610105920	2.100000e-52	217.0
24	TraesCS5A01G433200	chr5B	92.308	78	5	1	696	772	610206198	610206121	3.660000e-20	110.0
25	TraesCS5A01G433200	chr4A	82.509	1435	207	27	1020	2426	626954572	626953154	0.000000e+00	1219.0
26	TraesCS5A01G433200	chr4A	89.716	282	17	8	3195	3469	242900869	242900593	1.980000e-92	350.0
27	TraesCS5A01G433200	chr7A	95.940	739	22	4	2740	3473	643637867	643637132	0.000000e+00	1192.0
28	TraesCS5A01G433200	chr4B	94.708	737	33	6	2740	3473	630721014	630720281	0.000000e+00	1140.0
29	TraesCS5A01G433200	chr4B	77.916	403	53	11	2740	3131	71308199	71307822	5.840000e-53	219.0
30	TraesCS5A01G433200	chr7B	91.061	358	24	6	2740	3095	714515071	714515422	8.720000e-131	477.0
31	TraesCS5A01G433200	chr7B	79.472	492	65	17	2740	3226	41336909	41337369	2.010000e-82	316.0
32	TraesCS5A01G433200	chr7B	79.039	229	38	9	2740	2964	27074497	27074275	7.770000e-32	148.0
33	TraesCS5A01G433200	chr3B	82.520	492	58	12	2740	3229	75874797	75874332	1.160000e-109	407.0
34	TraesCS5A01G433200	chr3B	82.317	492	59	12	2740	3229	75839746	75839281	5.400000e-108	401.0
35	TraesCS5A01G433200	chr3B	81.911	492	62	11	2740	3229	75812447	75811981	1.170000e-104	390.0
36	TraesCS5A01G433200	chr3B	81.670	491	64	12	2740	3229	816470771	816470306	5.440000e-103	385.0
37	TraesCS5A01G433200	chr3B	90.435	115	9	1	3231	3345	816469536	816469424	2.160000e-32	150.0
38	TraesCS5A01G433200	chr1B	82.353	493	56	15	2740	3229	185545945	185545481	1.940000e-107	399.0
39	TraesCS5A01G433200	chr1B	88.596	114	11	1	3232	3345	185542992	185542881	1.680000e-28	137.0
40	TraesCS5A01G433200	chr6A	81.102	508	69	10	2724	3229	2840774	2840292	7.030000e-102	381.0
41	TraesCS5A01G433200	chr6D	80.527	493	63	13	2740	3229	38227044	38227506	7.130000e-92	348.0
42	TraesCS5A01G433200	chr6D	87.218	133	13	3	3231	3363	38229993	38230121	7.770000e-32	148.0
43	TraesCS5A01G433200	chr4D	77.890	493	82	11	2727	3218	297227059	297226593	7.340000e-72	281.0
44	TraesCS5A01G433200	chr2A	77.755	490	82	10	2740	3228	233895928	233896391	3.410000e-70	276.0
45	TraesCS5A01G433200	chr3A	92.174	115	7	1	3231	3345	650796635	650796747	9.980000e-36	161.0
46	TraesCS5A01G433200	chr2B	88.889	108	11	1	3234	3341	49525220	49525326	7.820000e-27	132.0
47	TraesCS5A01G433200	chr1A	89.583	96	10	0	3231	3326	526924742	526924837	4.710000e-24	122.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G433200	chr5A	617094851	617098323	3472	True	6414.000000	6414	100.000000	1	3473	1	chr5A.!!$R1	3472
1	TraesCS5A01G433200	chr5A	617122186	617125475	3289	True	1440.000000	2296	86.470000	9	2489	2	chr5A.!!$R3	2480
2	TraesCS5A01G433200	chr5D	494058960	494060016	1056	True	1515.000000	1515	92.526000	1434	2490	1	chr5D.!!$R2	1056
3	TraesCS5A01G433200	chr5D	493911330	493914196	2866	False	1440.000000	2512	87.961000	303	2739	2	chr5D.!!$F4	2436
4	TraesCS5A01G433200	chr5D	542106089	542107635	1546	False	1279.000000	1279	82.120000	958	2474	1	chr5D.!!$F2	1516
5	TraesCS5A01G433200	chr5D	494072928	494080176	7248	True	1028.200000	2863	89.177333	1	2582	3	chr5D.!!$R4	2581
6	TraesCS5A01G433200	chr5D	494066302	494066923	621	True	505.000000	505	81.928000	303	947	1	chr5D.!!$R3	644
7	TraesCS5A01G433200	chr5B	610280933	610283702	2769	True	1311.500000	2342	87.688000	456	2490	2	chr5B.!!$R3	2034
8	TraesCS5A01G433200	chr5B	610105920	610109992	4072	True	1093.000000	2784	87.534000	3	2739	3	chr5B.!!$R1	2736
9	TraesCS5A01G433200	chr5B	610204201	610206575	2374	True	906.666667	2351	88.783000	418	2741	3	chr5B.!!$R2	2323
10	TraesCS5A01G433200	chr4A	626953154	626954572	1418	True	1219.000000	1219	82.509000	1020	2426	1	chr4A.!!$R2	1406
11	TraesCS5A01G433200	chr7A	643637132	643637867	735	True	1192.000000	1192	95.940000	2740	3473	1	chr7A.!!$R1	733
12	TraesCS5A01G433200	chr4B	630720281	630721014	733	True	1140.000000	1140	94.708000	2740	3473	1	chr4B.!!$R2	733
13	TraesCS5A01G433200	chr3B	816469424	816470771	1347	True	267.500000	385	86.052500	2740	3345	2	chr3B.!!$R4	605
14	TraesCS5A01G433200	chr1B	185542881	185545945	3064	True	268.000000	399	85.474500	2740	3345	2	chr1B.!!$R1	605
15	TraesCS5A01G433200	chr6D	38227044	38230121	3077	False	248.000000	348	83.872500	2740	3363	2	chr6D.!!$F1	623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
792	2779	0.61326	TGTTCTGGAAGATGGACCGG	59.387	55.0	0.0	0.0	46.36	5.28	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2526	6535	0.538516	AGATCGCCAGCGGATCTAGT	60.539	55.0	18.72	3.48	40.25	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	62	8.922931	TGCACAGATAAATGATATACACCATT	57.077	30.769	0.00	0.00	34.75	3.16
111	114	3.798794	GCATGTGGCCCTGTGTATA	57.201	52.632	0.00	0.00	36.11	1.47
118	123	3.268334	TGTGGCCCTGTGTATAGGATTTT	59.732	43.478	0.00	0.00	40.42	1.82
119	124	3.632145	GTGGCCCTGTGTATAGGATTTTG	59.368	47.826	0.00	0.00	40.42	2.44
120	125	3.268334	TGGCCCTGTGTATAGGATTTTGT	59.732	43.478	0.00	0.00	40.42	2.83
150	155	5.437289	TGTAATTCCAAATGGATCGATGC	57.563	39.130	10.37	10.37	44.98	3.91
155	160	4.797800	TCCAAATGGATCGATGCAAAAA	57.202	36.364	23.87	0.00	39.78	1.94
264	270	2.535984	CGCCTAAAATCTACAGACTGCG	59.464	50.000	1.25	0.00	0.00	5.18
272	283	4.803098	ATCTACAGACTGCGGTACTTTT	57.197	40.909	0.00	0.00	0.00	2.27
301	313	7.176515	TGAGCAAGTATTTCATCCAAAAGCTTA	59.823	33.333	0.00	0.00	0.00	3.09
354	367	5.382618	AAAGAGATGTTTACGTCCGTAGT	57.617	39.130	0.00	0.00	32.40	2.73
356	369	4.730657	AGAGATGTTTACGTCCGTAGTTG	58.269	43.478	0.00	0.00	32.40	3.16
381	1290	5.756347	GCGGATGGTTTGTCTACATGTATTA	59.244	40.000	5.91	0.00	0.00	0.98
539	1593	5.066505	AGGAGTTATCGCAATGGATGTTTTC	59.933	40.000	0.00	0.00	0.00	2.29
631	1689	8.128582	GTCAAACAGACAGTGACAATTTGATTA	58.871	33.333	19.25	3.91	46.77	1.75
694	1771	3.064682	TGAGTGGATTTGTCAACGTTGTG	59.935	43.478	26.47	4.36	0.00	3.33
732	2635	5.587844	AGATCCATTAGACAAGTGATGCAAC	59.412	40.000	0.00	0.00	0.00	4.17
733	2636	4.910195	TCCATTAGACAAGTGATGCAACT	58.090	39.130	0.00	0.00	0.00	3.16
734	2637	5.316167	TCCATTAGACAAGTGATGCAACTT	58.684	37.500	0.00	0.00	41.08	2.66
789	2776	4.543590	TCTTCTGTTCTGGAAGATGGAC	57.456	45.455	2.54	0.00	46.36	4.02
790	2777	3.261897	TCTTCTGTTCTGGAAGATGGACC	59.738	47.826	2.54	0.00	46.36	4.46
791	2778	1.550524	TCTGTTCTGGAAGATGGACCG	59.449	52.381	0.00	0.00	46.36	4.79
792	2779	0.613260	TGTTCTGGAAGATGGACCGG	59.387	55.000	0.00	0.00	46.36	5.28
793	2780	0.902531	GTTCTGGAAGATGGACCGGA	59.097	55.000	9.46	0.00	46.36	5.14
863	3751	2.169832	TCAGAAAACGAGAGCCCAAG	57.830	50.000	0.00	0.00	0.00	3.61
867	3755	1.228657	AAAACGAGAGCCCAAGCGTC	61.229	55.000	0.00	0.00	46.67	5.19
888	3805	9.604626	AGCGTCTACGTATGACTTTATAAATAC	57.395	33.333	17.32	0.00	42.22	1.89
900	3817	8.133627	TGACTTTATAAATACTCCTCTACACGC	58.866	37.037	0.00	0.00	0.00	5.34
944	3868	2.790468	GCTTGCGTCTGATCTGCATTTC	60.790	50.000	0.00	0.00	38.60	2.17
1074	4047	1.476007	GCCACCTCATCCCTATCGCT	61.476	60.000	0.00	0.00	0.00	4.93
1344	4323	1.740664	GCCTTTCGACCGGTTCCTC	60.741	63.158	9.42	0.00	0.00	3.71
1515	4494	4.493747	GAGAACGCCCCCGACGAG	62.494	72.222	0.00	0.00	38.29	4.18
1590	4572	2.111878	CAGATGATGGACCCGGCC	59.888	66.667	0.00	0.00	0.00	6.13
1989	4974	0.463295	ACTCTGCTGAATGGATGCCG	60.463	55.000	0.00	0.00	0.00	5.69
2115	5100	2.345244	CACTGCGGCTGGAACTCT	59.655	61.111	11.64	0.00	0.00	3.24
2118	5103	1.302033	CTGCGGCTGGAACTCTGTT	60.302	57.895	0.00	0.00	0.00	3.16
2193	5178	2.032549	CCAGTTCAACAACGAGAAGCTG	60.033	50.000	0.00	0.00	37.61	4.24
2196	5181	2.325583	TCAACAACGAGAAGCTGGTT	57.674	45.000	0.00	0.00	32.91	3.67
2340	5340	0.179045	CCATCCGGAAGAAGGCGAAT	60.179	55.000	9.01	0.00	0.00	3.34
2341	5341	1.070134	CCATCCGGAAGAAGGCGAATA	59.930	52.381	9.01	0.00	0.00	1.75
2426	5426	1.938657	CTGATGGACGAGCTGACGGT	61.939	60.000	0.00	0.00	37.61	4.83
2491	5504	1.906105	ATGGGCATTGGTACGACGGT	61.906	55.000	0.00	0.00	0.00	4.83
2501	6497	3.316283	TGGTACGACGGTGTGTTAATTC	58.684	45.455	0.00	0.00	0.00	2.17
2526	6535	2.459644	AGCTTTGCTGATTAATGGCCA	58.540	42.857	8.56	8.56	37.57	5.36
2598	6868	5.796935	TCTTGTTTGTACGTCGCTATTCTAC	59.203	40.000	0.00	0.00	0.00	2.59
2609	6879	5.330295	GTCGCTATTCTACGAGAAAAGTGA	58.670	41.667	0.00	0.00	37.82	3.41
2618	6888	6.888430	TCTACGAGAAAAGTGAAAAATGAGC	58.112	36.000	0.00	0.00	0.00	4.26
2626	6897	9.387257	AGAAAAGTGAAAAATGAGCAAGAAAAT	57.613	25.926	0.00	0.00	0.00	1.82
2632	6903	9.642312	GTGAAAAATGAGCAAGAAAATTTTCTC	57.358	29.630	28.87	19.18	46.22	2.87
2644	6915	5.860716	AGAAAATTTTCTCTTTGCATCTCGC	59.139	36.000	24.62	0.00	43.72	5.03
2734	7007	4.155733	TAGCATGGTCCGTGGCCG	62.156	66.667	13.14	0.00	0.00	6.13
2800	7077	4.205323	CGCAAGGAAAAACTAAACGTCT	57.795	40.909	0.00	0.00	0.00	4.18
2804	7081	7.171434	CGCAAGGAAAAACTAAACGTCTATAG	58.829	38.462	0.00	0.00	0.00	1.31
2897	8013	4.619679	ACCCTATGCCCAACAATACAATT	58.380	39.130	0.00	0.00	0.00	2.32
3014	8431	4.338400	TCACCAGTACCTCACATAATCTCG	59.662	45.833	0.00	0.00	0.00	4.04
3037	8454	1.573108	TCGGAGGAAGAAGAGCCAAT	58.427	50.000	0.00	0.00	0.00	3.16
3426	12626	5.711506	GGGAAATTGGGAAAGCATCAAAAAT	59.288	36.000	0.00	0.00	0.00	1.82

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	8.311109	TGCAAATCTTTATTTTAGTTCCTTCCC	58.689	33.333	0.00	0.00	32.87	3.97
204	210	8.065473	TGGCACACTTGAAATCATAAACATAT	57.935	30.769	0.00	0.00	0.00	1.78
207	213	5.781210	TGGCACACTTGAAATCATAAACA	57.219	34.783	0.00	0.00	0.00	2.83
234	240	4.941263	TGTAGATTTTAGGCGTTTCTGCAT	59.059	37.500	0.00	0.00	36.28	3.96
238	244	5.869888	CAGTCTGTAGATTTTAGGCGTTTCT	59.130	40.000	0.00	0.00	0.00	2.52
247	253	5.909621	AGTACCGCAGTCTGTAGATTTTA	57.090	39.130	0.93	0.00	0.00	1.52
272	283	7.975616	GCTTTTGGATGAAATACTTGCTCATAA	59.024	33.333	0.00	0.00	29.97	1.90
349	362	0.446222	CAAACCATCCGCCAACTACG	59.554	55.000	0.00	0.00	0.00	3.51
354	367	1.072489	TGTAGACAAACCATCCGCCAA	59.928	47.619	0.00	0.00	0.00	4.52
356	369	1.670811	CATGTAGACAAACCATCCGCC	59.329	52.381	0.00	0.00	0.00	6.13
381	1290	8.874744	ATATGCATCATTTAGTAAGCTTGGAT	57.125	30.769	9.86	0.00	0.00	3.41
428	1474	4.859245	TGTCATTTTCTTCAGAGATCGTCG	59.141	41.667	0.00	0.00	0.00	5.12
497	1546	4.583073	ACTCCTTTTTAGACCGCAAAACAT	59.417	37.500	0.00	0.00	0.00	2.71
498	1547	3.949113	ACTCCTTTTTAGACCGCAAAACA	59.051	39.130	0.00	0.00	0.00	2.83
558	1612	1.282248	CGTGACAATGTTCGCCGAGT	61.282	55.000	0.00	0.00	0.00	4.18
642	1702	9.850198	TGAATGGTTCAGATGTATCATATTGAA	57.150	29.630	0.00	0.00	34.08	2.69
732	2635	2.957491	TGCAAGGGTTTGAACACAAG	57.043	45.000	0.00	0.00	36.36	3.16
733	2636	2.741228	GCATGCAAGGGTTTGAACACAA	60.741	45.455	14.21	0.00	36.36	3.33
734	2637	1.202510	GCATGCAAGGGTTTGAACACA	60.203	47.619	14.21	0.00	36.36	3.72
735	2638	1.501169	GCATGCAAGGGTTTGAACAC	58.499	50.000	14.21	0.00	36.36	3.32
789	2776	0.679505	TTCAGACTTGGTGACTCCGG	59.320	55.000	0.00	0.00	39.52	5.14
790	2777	1.937108	GCTTCAGACTTGGTGACTCCG	60.937	57.143	0.00	0.00	39.52	4.63
791	2778	1.609320	GGCTTCAGACTTGGTGACTCC	60.609	57.143	0.00	0.00	0.00	3.85
792	2779	1.070758	TGGCTTCAGACTTGGTGACTC	59.929	52.381	0.00	0.00	0.00	3.36
793	2780	1.131638	TGGCTTCAGACTTGGTGACT	58.868	50.000	0.00	0.00	0.00	3.41
863	3751	9.604626	AGTATTTATAAAGTCATACGTAGACGC	57.395	33.333	15.04	1.81	44.43	5.19
888	3805	2.018544	CGAGAGGCGTGTAGAGGAG	58.981	63.158	0.00	0.00	34.64	3.69
900	3817	1.841450	GGTGCGATTAAGACGAGAGG	58.159	55.000	8.63	0.00	0.00	3.69
944	3868	3.259064	GAGGAGGAGATCGATCGAGTAG	58.741	54.545	23.84	0.00	0.00	2.57
1074	4047	4.393155	AAGAGCGCGGCCATGTCA	62.393	61.111	8.83	0.00	0.00	3.58
1107	4080	0.036732	TGGTGAGGATGGTGCACTTC	59.963	55.000	17.98	13.68	33.25	3.01
1109	4082	1.376466	GTGGTGAGGATGGTGCACT	59.624	57.895	17.98	0.00	33.25	4.40
1329	4308	2.048877	GCGAGGAACCGGTCGAAA	60.049	61.111	16.71	0.00	38.50	3.46
1548	4527	4.406173	CTCAGCTCGACGCGGTGT	62.406	66.667	12.47	0.00	45.59	4.16
1590	4572	2.620112	CCACTGCCACGGCTTCTTG	61.620	63.158	9.92	1.20	42.51	3.02
1610	4592	0.591659	GTTCACGCCCTTGAAGAACC	59.408	55.000	0.00	0.00	36.15	3.62
1923	4905	0.874607	ACACGAAGTTCACGCCTGAC	60.875	55.000	3.32	0.00	41.61	3.51
1966	4951	3.015327	GCATCCATTCAGCAGAGTTTCT	58.985	45.455	0.00	0.00	0.00	2.52
1967	4952	2.098770	GGCATCCATTCAGCAGAGTTTC	59.901	50.000	0.00	0.00	0.00	2.78
1969	4954	1.760192	GGCATCCATTCAGCAGAGTT	58.240	50.000	0.00	0.00	0.00	3.01
2115	5100	3.059982	CTCACGGCCTCCAGAACA	58.940	61.111	0.00	0.00	0.00	3.18
2193	5178	1.239968	CCTTGAGCAGCTCCACAACC	61.240	60.000	20.16	0.00	0.00	3.77
2196	5181	1.071987	CACCTTGAGCAGCTCCACA	59.928	57.895	20.16	0.00	0.00	4.17
2337	5337	1.287425	CCTTCACGCCGAGGTTATTC	58.713	55.000	0.00	0.00	0.00	1.75
2340	5340	2.102109	TTGCCTTCACGCCGAGGTTA	62.102	55.000	0.00	0.00	0.00	2.85
2341	5341	3.469863	TTGCCTTCACGCCGAGGTT	62.470	57.895	0.00	0.00	0.00	3.50
2491	5504	1.904287	AAGCTGCCCGAATTAACACA	58.096	45.000	0.00	0.00	0.00	3.72
2526	6535	0.538516	AGATCGCCAGCGGATCTAGT	60.539	55.000	18.72	3.48	40.25	2.57
2575	6588	5.275142	CGTAGAATAGCGACGTACAAACAAG	60.275	44.000	0.00	0.00	40.18	3.16
2598	6868	6.201517	TCTTGCTCATTTTTCACTTTTCTCG	58.798	36.000	0.00	0.00	0.00	4.04
2618	6888	7.618751	GCGAGATGCAAAGAGAAAATTTTCTTG	60.619	37.037	29.24	24.12	44.84	3.02
2626	6897	1.464608	CCGCGAGATGCAAAGAGAAAA	59.535	47.619	8.23	0.00	46.97	2.29
2632	6903	0.737367	TCTGTCCGCGAGATGCAAAG	60.737	55.000	8.23	0.00	46.97	2.77
2644	6915	1.419374	CACCGAGTCTTTTCTGTCCG	58.581	55.000	0.00	0.00	0.00	4.79
2734	7007	3.142174	GGCTTGCTCCAATCCTGTATAC	58.858	50.000	0.00	0.00	28.30	1.47
2771	7044	1.719246	GTTTTTCCTTGCGGCGATTTC	59.281	47.619	12.98	0.00	0.00	2.17
2772	7045	1.339929	AGTTTTTCCTTGCGGCGATTT	59.660	42.857	12.98	0.00	0.00	2.17
2773	7046	0.958822	AGTTTTTCCTTGCGGCGATT	59.041	45.000	12.98	0.00	0.00	3.34
2804	7081	8.560374	GGTATCTTTTGTGATAGCTAAATGACC	58.440	37.037	0.00	0.00	41.52	4.02
2872	7950	4.421131	TGTATTGTTGGGCATAGGGTTTT	58.579	39.130	0.00	0.00	0.00	2.43
3014	8431	1.202475	GGCTCTTCTTCCTCCGATGAC	60.202	57.143	0.00	0.00	0.00	3.06
3426	12626	3.404224	TGTTGTCGCACCTTGGTATTA	57.596	42.857	0.00	0.00	0.00	0.98

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.