Multiple sequence alignment - TraesCS5A01G432400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G432400 chr5A 100.000 2612 0 0 1 2612 616804053 616806664 0.000000e+00 4824
1 TraesCS5A01G432400 chr5A 89.610 308 32 0 2305 2612 658956519 658956212 2.440000e-105 392
2 TraesCS5A01G432400 chr5B 90.334 1738 149 10 1 1725 609394670 609396401 0.000000e+00 2261
3 TraesCS5A01G432400 chr5B 90.276 1738 150 10 1 1725 609416646 609418377 0.000000e+00 2255
4 TraesCS5A01G432400 chr5B 90.219 1738 151 10 1 1725 609414120 609415851 0.000000e+00 2250
5 TraesCS5A01G432400 chr5B 90.167 1739 151 11 1 1725 609397196 609398928 0.000000e+00 2246
6 TraesCS5A01G432400 chr5B 90.161 1738 152 10 1 1725 609480681 609482412 0.000000e+00 2244
7 TraesCS5A01G432400 chr5B 90.226 1729 150 10 1 1716 609419172 609420894 0.000000e+00 2239
8 TraesCS5A01G432400 chr5B 90.168 1729 152 12 8 1725 609478185 609479906 0.000000e+00 2235
9 TraesCS5A01G432400 chr5B 90.046 1738 153 12 1 1725 609426715 609428445 0.000000e+00 2233
10 TraesCS5A01G432400 chr5B 90.046 1738 154 11 1 1725 609429259 609430990 0.000000e+00 2233
11 TraesCS5A01G432400 chr6D 94.306 562 27 5 1746 2304 471383863 471384422 0.000000e+00 856
12 TraesCS5A01G432400 chr7D 93.761 561 28 5 1746 2304 451953958 451953403 0.000000e+00 835
13 TraesCS5A01G432400 chr3D 93.583 561 33 3 1746 2304 152395065 152394506 0.000000e+00 833
14 TraesCS5A01G432400 chr3D 93.583 561 31 5 1746 2304 1808440 1807883 0.000000e+00 832
15 TraesCS5A01G432400 chr3D 93.583 561 28 5 1746 2304 37730439 37729885 0.000000e+00 830
16 TraesCS5A01G432400 chr3D 93.416 562 32 5 1746 2304 392599044 392598485 0.000000e+00 828
17 TraesCS5A01G432400 chr3D 92.532 308 23 0 2305 2612 234452763 234452456 2.390000e-120 442
18 TraesCS5A01G432400 chr3D 91.883 308 25 0 2305 2612 281106246 281105939 5.160000e-117 431
19 TraesCS5A01G432400 chr2D 93.716 557 32 3 1750 2304 275506568 275506013 0.000000e+00 832
20 TraesCS5A01G432400 chr2D 90.997 311 28 0 2302 2612 151173524 151173214 1.120000e-113 420
21 TraesCS5A01G432400 chr2D 89.441 322 30 4 1757 2075 192885566 192885246 1.130000e-108 403
22 TraesCS5A01G432400 chr1D 93.583 561 28 5 1746 2304 149782980 149783534 0.000000e+00 830
23 TraesCS5A01G432400 chr1D 93.416 562 31 6 1746 2304 318669615 318670173 0.000000e+00 828
24 TraesCS5A01G432400 chr1D 90.667 450 35 6 1760 2205 78023577 78023131 2.240000e-165 592
25 TraesCS5A01G432400 chr3A 97.078 308 9 0 2305 2612 607968568 607968261 1.070000e-143 520
26 TraesCS5A01G432400 chr6B 93.485 307 20 0 2305 2611 525946630 525946324 8.520000e-125 457
27 TraesCS5A01G432400 chr6B 89.711 311 32 0 2302 2612 156903829 156903519 5.240000e-107 398
28 TraesCS5A01G432400 chrUn 91.234 308 27 0 2304 2611 47751297 47751604 1.120000e-113 420
29 TraesCS5A01G432400 chr1A 90.291 309 30 0 2304 2612 568424188 568424496 3.130000e-109 405


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G432400 chr5A 616804053 616806664 2611 False 4824.0 4824 100.000000 1 2612 1 chr5A.!!$F1 2611
1 TraesCS5A01G432400 chr5B 609394670 609398928 4258 False 2253.5 2261 90.250500 1 1725 2 chr5B.!!$F1 1724
2 TraesCS5A01G432400 chr5B 609414120 609420894 6774 False 2248.0 2255 90.240333 1 1725 3 chr5B.!!$F2 1724
3 TraesCS5A01G432400 chr5B 609478185 609482412 4227 False 2239.5 2244 90.164500 1 1725 2 chr5B.!!$F4 1724
4 TraesCS5A01G432400 chr5B 609426715 609430990 4275 False 2233.0 2233 90.046000 1 1725 2 chr5B.!!$F3 1724
5 TraesCS5A01G432400 chr6D 471383863 471384422 559 False 856.0 856 94.306000 1746 2304 1 chr6D.!!$F1 558
6 TraesCS5A01G432400 chr7D 451953403 451953958 555 True 835.0 835 93.761000 1746 2304 1 chr7D.!!$R1 558
7 TraesCS5A01G432400 chr3D 152394506 152395065 559 True 833.0 833 93.583000 1746 2304 1 chr3D.!!$R3 558
8 TraesCS5A01G432400 chr3D 1807883 1808440 557 True 832.0 832 93.583000 1746 2304 1 chr3D.!!$R1 558
9 TraesCS5A01G432400 chr3D 37729885 37730439 554 True 830.0 830 93.583000 1746 2304 1 chr3D.!!$R2 558
10 TraesCS5A01G432400 chr3D 392598485 392599044 559 True 828.0 828 93.416000 1746 2304 1 chr3D.!!$R6 558
11 TraesCS5A01G432400 chr2D 275506013 275506568 555 True 832.0 832 93.716000 1750 2304 1 chr2D.!!$R3 554
12 TraesCS5A01G432400 chr1D 149782980 149783534 554 False 830.0 830 93.583000 1746 2304 1 chr1D.!!$F1 558
13 TraesCS5A01G432400 chr1D 318669615 318670173 558 False 828.0 828 93.416000 1746 2304 1 chr1D.!!$F2 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 920 0.251742 TGATGTTCCTTGGGGCTTGG 60.252 55.0 0.0 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2547 7205 0.033642 GAACGCCCCATAGCTACCTC 59.966 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.963129 TCACTGAAACAAAGAAGGTGGT 58.037 40.909 0.00 0.00 0.00 4.16
24 25 4.082245 CACTGAAACAAAGAAGGTGGTTGT 60.082 41.667 0.00 0.00 37.07 3.32
45 46 9.943163 GGTTGTTTAAAAATATTTGTTGCACAT 57.057 25.926 0.39 0.00 0.00 3.21
110 111 5.725362 TGTTGGTTGAAAAACCGAAGAAAT 58.275 33.333 0.00 0.00 45.75 2.17
131 132 9.507329 AGAAATAGACTGAATTAGTGCAAAAGA 57.493 29.630 0.00 0.00 40.53 2.52
173 174 7.595311 AAAGAAACATCCAAACTTTTGTGAC 57.405 32.000 1.21 0.00 36.45 3.67
176 177 8.062065 AGAAACATCCAAACTTTTGTGACTTA 57.938 30.769 1.21 0.00 36.45 2.24
177 178 8.527810 AGAAACATCCAAACTTTTGTGACTTAA 58.472 29.630 1.21 0.00 36.45 1.85
238 244 6.014771 AGGAACTAAAGGATATTTCCCACC 57.985 41.667 0.00 0.00 39.34 4.61
264 270 6.832384 GGGGCATGATCTATCATATTTGATGT 59.168 38.462 8.72 0.00 45.23 3.06
265 271 7.341256 GGGGCATGATCTATCATATTTGATGTT 59.659 37.037 8.72 0.00 45.23 2.71
266 272 8.746530 GGGCATGATCTATCATATTTGATGTTT 58.253 33.333 8.72 0.00 45.23 2.83
355 361 4.796830 GGGCGGTTTAAAATCGAGATTTTC 59.203 41.667 22.36 11.64 44.98 2.29
385 392 3.707102 TCCAAAAACCATTTCTTCCGGTT 59.293 39.130 0.00 0.00 44.90 4.44
386 393 3.807071 CCAAAAACCATTTCTTCCGGTTG 59.193 43.478 0.00 0.00 42.18 3.77
388 395 4.316205 AAAACCATTTCTTCCGGTTGTC 57.684 40.909 0.00 0.00 42.18 3.18
391 398 1.546773 CCATTTCTTCCGGTTGTCCCA 60.547 52.381 0.00 0.00 0.00 4.37
396 403 2.952116 TCTTCCGGTTGTCCCAAAAAT 58.048 42.857 0.00 0.00 0.00 1.82
409 416 5.478679 TGTCCCAAAAATAACACCTGGTATG 59.521 40.000 0.00 0.00 0.00 2.39
412 419 5.127031 CCCAAAAATAACACCTGGTATGGAG 59.873 44.000 0.00 0.00 0.00 3.86
418 425 1.203440 ACACCTGGTATGGAGAAGGGT 60.203 52.381 0.00 0.00 33.87 4.34
442 449 3.118261 TGGAAGGTAGCTGCTGGAATTAG 60.118 47.826 13.43 0.00 0.00 1.73
445 452 4.143986 AGGTAGCTGCTGGAATTAGAAC 57.856 45.455 13.43 0.00 0.00 3.01
457 464 3.408150 GAATTAGAACGCGCTTTGAGTG 58.592 45.455 5.73 0.00 0.00 3.51
477 484 8.918202 TGAGTGACACCAAATAGAAAATTACT 57.082 30.769 0.84 0.00 0.00 2.24
480 487 8.947115 AGTGACACCAAATAGAAAATTACTAGC 58.053 33.333 0.84 0.00 0.00 3.42
570 577 2.730382 TGATGTTACCGAGCTAGACCA 58.270 47.619 0.00 0.00 0.00 4.02
573 580 4.519350 TGATGTTACCGAGCTAGACCATAG 59.481 45.833 0.00 0.00 0.00 2.23
593 600 4.440829 TTGGCGGCTTCCATCCCC 62.441 66.667 11.43 0.00 35.77 4.81
616 623 8.836735 CCCCCAGATATAATACAAGTAGGAAAT 58.163 37.037 0.00 0.00 0.00 2.17
633 640 8.643324 AGTAGGAAATGTACATTACTCCTGATC 58.357 37.037 33.41 25.86 38.10 2.92
646 653 4.728772 ACTCCTGATCCAGATAGTCTCAG 58.271 47.826 0.00 0.00 32.44 3.35
654 661 6.939730 TGATCCAGATAGTCTCAGCTAGTTAG 59.060 42.308 0.00 0.00 0.00 2.34
673 680 6.214399 AGTTAGTTACACTACTTCACTGTGC 58.786 40.000 2.12 0.00 35.33 4.57
742 751 1.999648 AGCTCCATGCCAAAAGTTCA 58.000 45.000 0.00 0.00 44.23 3.18
762 776 5.723672 TCATTCACTAAAGAAGAGACGGT 57.276 39.130 0.00 0.00 0.00 4.83
772 786 8.610035 ACTAAAGAAGAGACGGTTGTTTAAAAG 58.390 33.333 0.00 0.00 0.00 2.27
784 798 8.301002 ACGGTTGTTTAAAAGTATATGTTGCAT 58.699 29.630 0.00 0.00 0.00 3.96
794 808 4.650588 AGTATATGTTGCATGCCCAAATGT 59.349 37.500 16.68 3.52 0.00 2.71
866 880 5.276584 CCGAAGAAATGAGACTGAATTAGCG 60.277 44.000 0.00 0.00 0.00 4.26
876 890 4.708421 AGACTGAATTAGCGTACCCAGTTA 59.292 41.667 0.00 0.00 35.32 2.24
889 903 2.371841 ACCCAGTTACATGAGCAGTTGA 59.628 45.455 0.00 0.00 0.00 3.18
895 909 4.697352 AGTTACATGAGCAGTTGATGTTCC 59.303 41.667 0.00 0.00 38.31 3.62
906 920 0.251742 TGATGTTCCTTGGGGCTTGG 60.252 55.000 0.00 0.00 0.00 3.61
1008 1022 5.604231 TGAGTATCTCAAGGACATGGCTAAT 59.396 40.000 0.00 0.00 37.57 1.73
1013 1027 5.188434 TCTCAAGGACATGGCTAATTTGAG 58.812 41.667 20.09 20.09 40.65 3.02
1016 1030 4.803329 AGGACATGGCTAATTTGAGGAT 57.197 40.909 0.00 0.00 0.00 3.24
1017 1031 5.912149 AGGACATGGCTAATTTGAGGATA 57.088 39.130 0.00 0.00 0.00 2.59
1039 1053 5.176407 ACTACTAGCTATGTTTGCTCTCG 57.824 43.478 0.00 0.00 41.46 4.04
1051 1065 1.256812 TGCTCTCGTGATGTTCCTGA 58.743 50.000 0.00 0.00 0.00 3.86
1061 1075 0.693049 ATGTTCCTGACACACCTCCC 59.307 55.000 0.00 0.00 42.04 4.30
1062 1076 1.375326 GTTCCTGACACACCTCCCC 59.625 63.158 0.00 0.00 0.00 4.81
1077 1091 3.461773 CCCGTCCATGGCGTCTCT 61.462 66.667 21.61 0.00 0.00 3.10
1092 1106 4.314440 TCTGTGTCCGTGGGCAGC 62.314 66.667 0.00 0.00 0.00 5.25
1115 1129 2.164427 CGCGAACGTTACTACAGAGAC 58.836 52.381 0.00 0.00 33.53 3.36
1116 1130 2.411935 CGCGAACGTTACTACAGAGACA 60.412 50.000 0.00 0.00 33.53 3.41
1119 1133 4.612259 GCGAACGTTACTACAGAGACAAGA 60.612 45.833 0.00 0.00 0.00 3.02
1123 1137 4.023365 ACGTTACTACAGAGACAAGACACC 60.023 45.833 0.00 0.00 0.00 4.16
1125 1139 1.269998 ACTACAGAGACAAGACACCGC 59.730 52.381 0.00 0.00 0.00 5.68
1148 1162 2.986306 GCAGGTGCCACATCAGTGC 61.986 63.158 0.00 0.00 44.53 4.40
1153 1167 0.607489 GTGCCACATCAGTGCCTTCT 60.607 55.000 0.00 0.00 44.53 2.85
1162 1176 1.980772 AGTGCCTTCTTGCATGGCC 60.981 57.895 14.89 0.00 43.53 5.36
1216 1230 3.130693 GGTCTGCTATAAAGACGGTCACT 59.869 47.826 11.27 0.00 44.16 3.41
1284 1298 2.166664 GGCGATCCTAACTCTGAACAGT 59.833 50.000 1.73 0.00 0.00 3.55
1417 1431 2.089980 GCAGGTGCAACAAGATGATCT 58.910 47.619 3.64 0.00 39.98 2.75
1488 1502 3.411418 CTCGGTGTACGGCTGCGAT 62.411 63.158 0.00 0.00 44.45 4.58
1491 1505 2.509336 GTGTACGGCTGCGATGCT 60.509 61.111 0.00 0.00 0.00 3.79
1512 1526 1.891919 GCACAACTTCGAGCCACCA 60.892 57.895 0.00 0.00 0.00 4.17
1546 1560 2.598099 TAGACGTGTCACCGGCCA 60.598 61.111 0.00 0.00 36.16 5.36
1574 1588 3.011517 GCTGGGGCTCAAGGAGGA 61.012 66.667 0.00 0.00 35.22 3.71
1584 1598 2.238395 GCTCAAGGAGGAGATTGGAGTT 59.762 50.000 0.00 0.00 37.05 3.01
1596 1610 5.942826 GGAGATTGGAGTTTTCAAGATCACT 59.057 40.000 0.00 0.00 0.00 3.41
1625 1639 3.070476 TGTGTGAGCTATGCCATGAAA 57.930 42.857 0.00 0.00 0.00 2.69
1684 4299 3.490896 AGCATAGATATGTGCGTTGTTCG 59.509 43.478 3.29 0.00 45.69 3.95
1708 4323 0.875059 GTGGTGGAGTTGCTGCTAAC 59.125 55.000 0.00 4.12 0.00 2.34
1716 4331 6.318900 GGTGGAGTTGCTGCTAACTAAAATAT 59.681 38.462 14.43 0.00 40.78 1.28
1719 4334 6.038714 GGAGTTGCTGCTAACTAAAATATGCT 59.961 38.462 14.43 0.00 40.78 3.79
1725 4340 6.293462 GCTGCTAACTAAAATATGCTACCACC 60.293 42.308 0.00 0.00 0.00 4.61
1726 4341 6.654959 TGCTAACTAAAATATGCTACCACCA 58.345 36.000 0.00 0.00 0.00 4.17
1727 4342 6.540914 TGCTAACTAAAATATGCTACCACCAC 59.459 38.462 0.00 0.00 0.00 4.16
1728 4343 6.766467 GCTAACTAAAATATGCTACCACCACT 59.234 38.462 0.00 0.00 0.00 4.00
1729 4344 7.929785 GCTAACTAAAATATGCTACCACCACTA 59.070 37.037 0.00 0.00 0.00 2.74
1730 4345 9.257651 CTAACTAAAATATGCTACCACCACTAC 57.742 37.037 0.00 0.00 0.00 2.73
1731 4346 7.190335 ACTAAAATATGCTACCACCACTACA 57.810 36.000 0.00 0.00 0.00 2.74
1732 4347 7.272978 ACTAAAATATGCTACCACCACTACAG 58.727 38.462 0.00 0.00 0.00 2.74
1734 4349 5.950544 AATATGCTACCACCACTACAGAA 57.049 39.130 0.00 0.00 0.00 3.02
1735 4350 5.950544 ATATGCTACCACCACTACAGAAA 57.049 39.130 0.00 0.00 0.00 2.52
1736 4351 4.634012 ATGCTACCACCACTACAGAAAA 57.366 40.909 0.00 0.00 0.00 2.29
1737 4352 4.425180 TGCTACCACCACTACAGAAAAA 57.575 40.909 0.00 0.00 0.00 1.94
1738 4353 4.385825 TGCTACCACCACTACAGAAAAAG 58.614 43.478 0.00 0.00 0.00 2.27
1739 4354 4.101898 TGCTACCACCACTACAGAAAAAGA 59.898 41.667 0.00 0.00 0.00 2.52
1740 4355 4.451435 GCTACCACCACTACAGAAAAAGAC 59.549 45.833 0.00 0.00 0.00 3.01
1741 4356 4.497291 ACCACCACTACAGAAAAAGACA 57.503 40.909 0.00 0.00 0.00 3.41
1742 4357 4.196971 ACCACCACTACAGAAAAAGACAC 58.803 43.478 0.00 0.00 0.00 3.67
1743 4358 4.196193 CCACCACTACAGAAAAAGACACA 58.804 43.478 0.00 0.00 0.00 3.72
1746 4361 5.049405 CACCACTACAGAAAAAGACACATCC 60.049 44.000 0.00 0.00 0.00 3.51
1747 4362 4.152402 CCACTACAGAAAAAGACACATCCG 59.848 45.833 0.00 0.00 0.00 4.18
1748 4363 4.750098 CACTACAGAAAAAGACACATCCGT 59.250 41.667 0.00 0.00 0.00 4.69
1799 5123 6.873997 TGACACCTCTATGACGATAATTGTT 58.126 36.000 0.00 0.00 0.00 2.83
1841 5165 1.282157 GATGTGGTGGGCTCCTACTTT 59.718 52.381 2.46 0.00 0.00 2.66
1853 5177 6.723977 TGGGCTCCTACTTTTATGACAAAAAT 59.276 34.615 0.00 0.00 0.00 1.82
1881 5207 2.286365 AAATGGGCTTTTCGTCCTGA 57.714 45.000 0.00 0.00 38.58 3.86
1995 6447 3.062639 CGGTTACGGTGGGAGGTT 58.937 61.111 0.00 0.00 36.18 3.50
2022 6474 1.071605 GAGCGATGCACGTTTCTCTT 58.928 50.000 9.76 0.00 44.60 2.85
2033 6682 5.091431 GCACGTTTCTCTTATACACGTACT 58.909 41.667 0.00 0.00 41.97 2.73
2034 6683 5.570589 GCACGTTTCTCTTATACACGTACTT 59.429 40.000 0.00 0.00 41.97 2.24
2102 6751 0.246635 GCTCTAACTGAACCCGAGCA 59.753 55.000 0.00 0.00 44.74 4.26
2178 6827 1.001706 CTGAACCCGATCGAGCGATTA 60.002 52.381 26.68 6.23 34.60 1.75
2273 6931 1.883084 GAATAGTGAGCGGTGGCGG 60.883 63.158 0.00 0.00 46.35 6.13
2309 6967 3.463345 ACCCCGTGGTGTCACTAC 58.537 61.111 9.33 9.33 45.58 2.73
2310 6968 1.458020 ACCCCGTGGTGTCACTACA 60.458 57.895 18.31 0.00 45.58 2.74
2322 6980 4.948341 TGTCACTACACCACAACACTAT 57.052 40.909 0.00 0.00 0.00 2.12
2324 6982 6.599356 TGTCACTACACCACAACACTATAT 57.401 37.500 0.00 0.00 0.00 0.86
2325 6983 6.999950 TGTCACTACACCACAACACTATATT 58.000 36.000 0.00 0.00 0.00 1.28
2326 6984 7.094631 TGTCACTACACCACAACACTATATTC 58.905 38.462 0.00 0.00 0.00 1.75
2327 6985 6.534079 GTCACTACACCACAACACTATATTCC 59.466 42.308 0.00 0.00 0.00 3.01
2328 6986 5.815740 CACTACACCACAACACTATATTCCC 59.184 44.000 0.00 0.00 0.00 3.97
2329 6987 4.919774 ACACCACAACACTATATTCCCA 57.080 40.909 0.00 0.00 0.00 4.37
2330 6988 4.843728 ACACCACAACACTATATTCCCAG 58.156 43.478 0.00 0.00 0.00 4.45
2331 6989 3.627577 CACCACAACACTATATTCCCAGC 59.372 47.826 0.00 0.00 0.00 4.85
2332 6990 3.265737 ACCACAACACTATATTCCCAGCA 59.734 43.478 0.00 0.00 0.00 4.41
2333 6991 3.879295 CCACAACACTATATTCCCAGCAG 59.121 47.826 0.00 0.00 0.00 4.24
2334 6992 3.313526 CACAACACTATATTCCCAGCAGC 59.686 47.826 0.00 0.00 0.00 5.25
2335 6993 2.880890 CAACACTATATTCCCAGCAGCC 59.119 50.000 0.00 0.00 0.00 4.85
2336 6994 2.126882 ACACTATATTCCCAGCAGCCA 58.873 47.619 0.00 0.00 0.00 4.75
2337 6995 2.509548 ACACTATATTCCCAGCAGCCAA 59.490 45.455 0.00 0.00 0.00 4.52
2338 6996 3.144506 CACTATATTCCCAGCAGCCAAG 58.855 50.000 0.00 0.00 0.00 3.61
2339 6997 2.780010 ACTATATTCCCAGCAGCCAAGT 59.220 45.455 0.00 0.00 0.00 3.16
2340 6998 2.834638 ATATTCCCAGCAGCCAAGTT 57.165 45.000 0.00 0.00 0.00 2.66
2341 6999 1.838112 TATTCCCAGCAGCCAAGTTG 58.162 50.000 0.00 0.00 0.00 3.16
2342 7000 0.901580 ATTCCCAGCAGCCAAGTTGG 60.902 55.000 18.17 18.17 41.55 3.77
2343 7001 2.203538 CCCAGCAGCCAAGTTGGT 60.204 61.111 22.85 7.42 40.46 3.67
2344 7002 1.833934 CCCAGCAGCCAAGTTGGTT 60.834 57.895 22.85 14.90 40.46 3.67
2356 7014 4.871933 CAAGTTGGTTGGGAAAATAGCT 57.128 40.909 0.00 0.00 31.82 3.32
2357 7015 5.213891 CAAGTTGGTTGGGAAAATAGCTT 57.786 39.130 0.00 0.00 31.82 3.74
2358 7016 5.610398 CAAGTTGGTTGGGAAAATAGCTTT 58.390 37.500 0.00 0.00 31.82 3.51
2359 7017 5.468540 AGTTGGTTGGGAAAATAGCTTTC 57.531 39.130 0.00 0.00 42.45 2.62
2360 7018 4.022329 AGTTGGTTGGGAAAATAGCTTTCG 60.022 41.667 0.00 0.00 43.88 3.46
2361 7019 3.492337 TGGTTGGGAAAATAGCTTTCGT 58.508 40.909 0.00 0.00 43.88 3.85
2362 7020 3.504520 TGGTTGGGAAAATAGCTTTCGTC 59.495 43.478 0.00 0.00 43.88 4.20
2363 7021 3.504520 GGTTGGGAAAATAGCTTTCGTCA 59.495 43.478 0.00 0.00 43.88 4.35
2364 7022 4.022676 GGTTGGGAAAATAGCTTTCGTCAA 60.023 41.667 0.00 0.00 43.88 3.18
2365 7023 4.759516 TGGGAAAATAGCTTTCGTCAAC 57.240 40.909 0.00 0.00 43.88 3.18
2366 7024 4.138290 TGGGAAAATAGCTTTCGTCAACA 58.862 39.130 0.00 0.00 43.88 3.33
2367 7025 4.023536 TGGGAAAATAGCTTTCGTCAACAC 60.024 41.667 0.00 0.00 43.88 3.32
2368 7026 4.023536 GGGAAAATAGCTTTCGTCAACACA 60.024 41.667 0.00 0.00 43.88 3.72
2369 7027 4.909880 GGAAAATAGCTTTCGTCAACACAC 59.090 41.667 0.00 0.00 43.88 3.82
2370 7028 5.493133 AAAATAGCTTTCGTCAACACACA 57.507 34.783 0.00 0.00 0.00 3.72
2371 7029 4.732285 AATAGCTTTCGTCAACACACAG 57.268 40.909 0.00 0.00 0.00 3.66
2372 7030 2.024176 AGCTTTCGTCAACACACAGT 57.976 45.000 0.00 0.00 0.00 3.55
2373 7031 1.933853 AGCTTTCGTCAACACACAGTC 59.066 47.619 0.00 0.00 0.00 3.51
2374 7032 1.332028 GCTTTCGTCAACACACAGTCG 60.332 52.381 0.00 0.00 0.00 4.18
2375 7033 1.257936 CTTTCGTCAACACACAGTCGG 59.742 52.381 0.00 0.00 0.00 4.79
2376 7034 0.173935 TTCGTCAACACACAGTCGGT 59.826 50.000 0.00 0.00 0.00 4.69
2377 7035 0.248743 TCGTCAACACACAGTCGGTC 60.249 55.000 0.00 0.00 0.00 4.79
2378 7036 1.537289 CGTCAACACACAGTCGGTCG 61.537 60.000 0.00 0.00 0.00 4.79
2379 7037 1.066752 TCAACACACAGTCGGTCGG 59.933 57.895 0.00 0.00 0.00 4.79
2380 7038 1.954146 CAACACACAGTCGGTCGGG 60.954 63.158 0.00 0.00 0.00 5.14
2381 7039 2.129146 AACACACAGTCGGTCGGGA 61.129 57.895 0.00 0.00 0.00 5.14
2382 7040 1.678598 AACACACAGTCGGTCGGGAA 61.679 55.000 0.00 0.00 0.00 3.97
2383 7041 1.068417 CACACAGTCGGTCGGGAAA 59.932 57.895 0.00 0.00 0.00 3.13
2384 7042 0.944311 CACACAGTCGGTCGGGAAAG 60.944 60.000 0.00 0.00 0.00 2.62
2385 7043 1.111116 ACACAGTCGGTCGGGAAAGA 61.111 55.000 0.00 0.00 0.00 2.52
2386 7044 0.666577 CACAGTCGGTCGGGAAAGAC 60.667 60.000 0.00 0.00 40.25 3.01
2387 7045 0.826672 ACAGTCGGTCGGGAAAGACT 60.827 55.000 2.64 2.64 43.87 3.24
2388 7046 1.171308 CAGTCGGTCGGGAAAGACTA 58.829 55.000 6.89 0.00 41.46 2.59
2389 7047 1.749634 CAGTCGGTCGGGAAAGACTAT 59.250 52.381 6.89 0.00 41.46 2.12
2390 7048 2.165845 CAGTCGGTCGGGAAAGACTATT 59.834 50.000 6.89 0.00 41.46 1.73
2391 7049 2.165845 AGTCGGTCGGGAAAGACTATTG 59.834 50.000 5.77 0.00 41.57 1.90
2392 7050 1.134907 TCGGTCGGGAAAGACTATTGC 60.135 52.381 0.00 0.00 40.76 3.56
2393 7051 1.664873 GGTCGGGAAAGACTATTGCC 58.335 55.000 0.00 0.00 40.76 4.52
2397 7055 1.664873 GGGAAAGACTATTGCCGACC 58.335 55.000 0.00 0.00 30.80 4.79
2398 7056 1.287425 GGAAAGACTATTGCCGACCG 58.713 55.000 0.00 0.00 0.00 4.79
2399 7057 1.134907 GGAAAGACTATTGCCGACCGA 60.135 52.381 0.00 0.00 0.00 4.69
2400 7058 2.483188 GGAAAGACTATTGCCGACCGAT 60.483 50.000 0.00 0.00 0.00 4.18
2401 7059 2.510768 AAGACTATTGCCGACCGATC 57.489 50.000 0.00 0.00 0.00 3.69
2402 7060 1.399714 AGACTATTGCCGACCGATCA 58.600 50.000 0.00 0.00 0.00 2.92
2403 7061 1.338337 AGACTATTGCCGACCGATCAG 59.662 52.381 0.00 0.00 0.00 2.90
2413 7071 4.941609 CCGATCAGGTCTGTTGGG 57.058 61.111 0.00 0.00 34.51 4.12
2414 7072 1.221840 CCGATCAGGTCTGTTGGGG 59.778 63.158 0.00 0.00 34.51 4.96
2415 7073 1.264749 CCGATCAGGTCTGTTGGGGA 61.265 60.000 0.00 0.00 34.51 4.81
2416 7074 0.613260 CGATCAGGTCTGTTGGGGAA 59.387 55.000 0.00 0.00 0.00 3.97
2417 7075 1.003118 CGATCAGGTCTGTTGGGGAAA 59.997 52.381 0.00 0.00 0.00 3.13
2418 7076 2.716217 GATCAGGTCTGTTGGGGAAAG 58.284 52.381 0.00 0.00 0.00 2.62
2419 7077 1.518367 TCAGGTCTGTTGGGGAAAGT 58.482 50.000 0.00 0.00 0.00 2.66
2420 7078 1.420138 TCAGGTCTGTTGGGGAAAGTC 59.580 52.381 0.00 0.00 0.00 3.01
2421 7079 0.771755 AGGTCTGTTGGGGAAAGTCC 59.228 55.000 0.00 0.00 35.23 3.85
2422 7080 0.476771 GGTCTGTTGGGGAAAGTCCA 59.523 55.000 0.00 0.00 38.64 4.02
2423 7081 1.545651 GGTCTGTTGGGGAAAGTCCAG 60.546 57.143 0.00 0.00 38.64 3.86
2424 7082 1.420138 GTCTGTTGGGGAAAGTCCAGA 59.580 52.381 0.00 0.00 38.64 3.86
2425 7083 1.420138 TCTGTTGGGGAAAGTCCAGAC 59.580 52.381 0.00 0.00 38.64 3.51
2426 7084 0.107831 TGTTGGGGAAAGTCCAGACG 59.892 55.000 0.00 0.00 38.64 4.18
2427 7085 0.605589 GTTGGGGAAAGTCCAGACGG 60.606 60.000 0.00 0.00 38.64 4.79
2428 7086 1.774894 TTGGGGAAAGTCCAGACGGG 61.775 60.000 0.00 0.00 38.64 5.28
2429 7087 1.916777 GGGGAAAGTCCAGACGGGA 60.917 63.158 0.00 0.00 45.89 5.14
2445 7103 3.998156 GAAAGCCCTTTCCCGACC 58.002 61.111 9.13 0.00 42.20 4.79
2446 7104 1.074248 GAAAGCCCTTTCCCGACCA 59.926 57.895 9.13 0.00 42.20 4.02
2447 7105 0.538746 GAAAGCCCTTTCCCGACCAA 60.539 55.000 9.13 0.00 42.20 3.67
2448 7106 0.826256 AAAGCCCTTTCCCGACCAAC 60.826 55.000 0.00 0.00 0.00 3.77
2449 7107 2.002018 AAGCCCTTTCCCGACCAACA 62.002 55.000 0.00 0.00 0.00 3.33
2450 7108 1.304134 GCCCTTTCCCGACCAACAT 60.304 57.895 0.00 0.00 0.00 2.71
2451 7109 0.034863 GCCCTTTCCCGACCAACATA 60.035 55.000 0.00 0.00 0.00 2.29
2452 7110 1.409661 GCCCTTTCCCGACCAACATAT 60.410 52.381 0.00 0.00 0.00 1.78
2453 7111 2.572290 CCCTTTCCCGACCAACATATC 58.428 52.381 0.00 0.00 0.00 1.63
2454 7112 2.172717 CCCTTTCCCGACCAACATATCT 59.827 50.000 0.00 0.00 0.00 1.98
2455 7113 3.371595 CCCTTTCCCGACCAACATATCTT 60.372 47.826 0.00 0.00 0.00 2.40
2456 7114 4.270008 CCTTTCCCGACCAACATATCTTT 58.730 43.478 0.00 0.00 0.00 2.52
2457 7115 4.335594 CCTTTCCCGACCAACATATCTTTC 59.664 45.833 0.00 0.00 0.00 2.62
2458 7116 3.553828 TCCCGACCAACATATCTTTCC 57.446 47.619 0.00 0.00 0.00 3.13
2459 7117 2.171870 TCCCGACCAACATATCTTTCCC 59.828 50.000 0.00 0.00 0.00 3.97
2460 7118 2.092646 CCCGACCAACATATCTTTCCCA 60.093 50.000 0.00 0.00 0.00 4.37
2461 7119 3.616219 CCGACCAACATATCTTTCCCAA 58.384 45.455 0.00 0.00 0.00 4.12
2462 7120 3.377172 CCGACCAACATATCTTTCCCAAC 59.623 47.826 0.00 0.00 0.00 3.77
2463 7121 3.377172 CGACCAACATATCTTTCCCAACC 59.623 47.826 0.00 0.00 0.00 3.77
2464 7122 3.352648 ACCAACATATCTTTCCCAACCG 58.647 45.455 0.00 0.00 0.00 4.44
2465 7123 3.009695 ACCAACATATCTTTCCCAACCGA 59.990 43.478 0.00 0.00 0.00 4.69
2466 7124 3.377172 CCAACATATCTTTCCCAACCGAC 59.623 47.826 0.00 0.00 0.00 4.79
2467 7125 4.261801 CAACATATCTTTCCCAACCGACT 58.738 43.478 0.00 0.00 0.00 4.18
2468 7126 3.873910 ACATATCTTTCCCAACCGACTG 58.126 45.455 0.00 0.00 0.00 3.51
2469 7127 2.396590 TATCTTTCCCAACCGACTGC 57.603 50.000 0.00 0.00 0.00 4.40
2470 7128 0.693049 ATCTTTCCCAACCGACTGCT 59.307 50.000 0.00 0.00 0.00 4.24
2471 7129 0.472471 TCTTTCCCAACCGACTGCTT 59.528 50.000 0.00 0.00 0.00 3.91
2472 7130 0.593128 CTTTCCCAACCGACTGCTTG 59.407 55.000 0.00 0.00 0.00 4.01
2473 7131 0.181587 TTTCCCAACCGACTGCTTGA 59.818 50.000 0.00 0.00 0.00 3.02
2474 7132 0.534203 TTCCCAACCGACTGCTTGAC 60.534 55.000 0.00 0.00 0.00 3.18
2475 7133 2.317609 CCCAACCGACTGCTTGACG 61.318 63.158 0.00 0.00 0.00 4.35
2479 7137 2.571757 CCGACTGCTTGACGGCTA 59.428 61.111 7.92 0.00 45.52 3.93
2480 7138 1.141881 CCGACTGCTTGACGGCTAT 59.858 57.895 7.92 0.00 45.52 2.97
2481 7139 1.148157 CCGACTGCTTGACGGCTATG 61.148 60.000 7.92 0.00 45.52 2.23
2482 7140 1.756375 CGACTGCTTGACGGCTATGC 61.756 60.000 0.00 0.00 0.00 3.14
2483 7141 0.460987 GACTGCTTGACGGCTATGCT 60.461 55.000 0.00 0.00 0.00 3.79
2484 7142 0.742281 ACTGCTTGACGGCTATGCTG 60.742 55.000 0.00 0.00 41.29 4.41
2494 7152 2.417719 CGGCTATGCTGTATCTTTCCC 58.582 52.381 0.00 0.00 0.00 3.97
2495 7153 2.417719 GGCTATGCTGTATCTTTCCCG 58.582 52.381 0.00 0.00 0.00 5.14
2496 7154 2.037251 GGCTATGCTGTATCTTTCCCGA 59.963 50.000 0.00 0.00 0.00 5.14
2497 7155 3.060602 GCTATGCTGTATCTTTCCCGAC 58.939 50.000 0.00 0.00 0.00 4.79
2498 7156 2.622064 ATGCTGTATCTTTCCCGACC 57.378 50.000 0.00 0.00 0.00 4.79
2499 7157 1.271856 TGCTGTATCTTTCCCGACCA 58.728 50.000 0.00 0.00 0.00 4.02
2500 7158 1.626321 TGCTGTATCTTTCCCGACCAA 59.374 47.619 0.00 0.00 0.00 3.67
2501 7159 2.007608 GCTGTATCTTTCCCGACCAAC 58.992 52.381 0.00 0.00 0.00 3.77
2502 7160 2.614481 GCTGTATCTTTCCCGACCAACA 60.614 50.000 0.00 0.00 0.00 3.33
2503 7161 3.670625 CTGTATCTTTCCCGACCAACAA 58.329 45.455 0.00 0.00 0.00 2.83
2504 7162 4.261801 CTGTATCTTTCCCGACCAACAAT 58.738 43.478 0.00 0.00 0.00 2.71
2505 7163 4.258543 TGTATCTTTCCCGACCAACAATC 58.741 43.478 0.00 0.00 0.00 2.67
2506 7164 3.721087 ATCTTTCCCGACCAACAATCT 57.279 42.857 0.00 0.00 0.00 2.40
2507 7165 3.502123 TCTTTCCCGACCAACAATCTT 57.498 42.857 0.00 0.00 0.00 2.40
2508 7166 3.827722 TCTTTCCCGACCAACAATCTTT 58.172 40.909 0.00 0.00 0.00 2.52
2509 7167 4.211920 TCTTTCCCGACCAACAATCTTTT 58.788 39.130 0.00 0.00 0.00 2.27
2510 7168 4.037446 TCTTTCCCGACCAACAATCTTTTG 59.963 41.667 0.00 0.00 38.86 2.44
2512 7170 1.272212 CCCGACCAACAATCTTTTGGG 59.728 52.381 6.10 0.00 46.85 4.12
2514 7172 2.455674 GACCAACAATCTTTTGGGCC 57.544 50.000 0.00 0.00 45.38 5.80
2515 7173 1.970640 GACCAACAATCTTTTGGGCCT 59.029 47.619 4.53 0.00 45.38 5.19
2516 7174 1.693606 ACCAACAATCTTTTGGGCCTG 59.306 47.619 4.53 0.00 46.85 4.85
2517 7175 1.608801 CCAACAATCTTTTGGGCCTGC 60.609 52.381 4.53 0.00 40.03 4.85
2518 7176 0.686789 AACAATCTTTTGGGCCTGCC 59.313 50.000 4.53 0.00 37.15 4.85
2519 7177 0.471591 ACAATCTTTTGGGCCTGCCA 60.472 50.000 10.86 0.00 37.15 4.92
2520 7178 0.906775 CAATCTTTTGGGCCTGCCAT 59.093 50.000 10.86 0.00 37.98 4.40
2521 7179 0.906775 AATCTTTTGGGCCTGCCATG 59.093 50.000 10.86 0.00 37.98 3.66
2522 7180 0.979187 ATCTTTTGGGCCTGCCATGG 60.979 55.000 7.63 7.63 37.98 3.66
2523 7181 2.607134 TTTTGGGCCTGCCATGGG 60.607 61.111 15.13 0.00 37.98 4.00
2539 7197 4.167597 GGCTTTTCCCGACCAACA 57.832 55.556 0.00 0.00 0.00 3.33
2540 7198 1.956802 GGCTTTTCCCGACCAACAG 59.043 57.895 0.00 0.00 0.00 3.16
2541 7199 0.822121 GGCTTTTCCCGACCAACAGT 60.822 55.000 0.00 0.00 0.00 3.55
2542 7200 0.591659 GCTTTTCCCGACCAACAGTC 59.408 55.000 0.00 0.00 42.54 3.51
2543 7201 1.235724 CTTTTCCCGACCAACAGTCC 58.764 55.000 0.00 0.00 43.08 3.85
2544 7202 0.533308 TTTTCCCGACCAACAGTCCG 60.533 55.000 0.00 0.00 43.08 4.79
2545 7203 1.688269 TTTCCCGACCAACAGTCCGT 61.688 55.000 0.00 0.00 43.08 4.69
2546 7204 1.688269 TTCCCGACCAACAGTCCGTT 61.688 55.000 0.00 0.00 43.08 4.44
2554 7212 3.908737 AACAGTCCGTTGAGGTAGC 57.091 52.632 0.00 0.00 41.99 3.58
2555 7213 1.339097 AACAGTCCGTTGAGGTAGCT 58.661 50.000 0.00 0.00 41.99 3.32
2556 7214 2.211250 ACAGTCCGTTGAGGTAGCTA 57.789 50.000 0.00 0.00 41.99 3.32
2557 7215 2.736347 ACAGTCCGTTGAGGTAGCTAT 58.264 47.619 0.00 0.00 41.99 2.97
2558 7216 2.427453 ACAGTCCGTTGAGGTAGCTATG 59.573 50.000 0.00 0.00 41.99 2.23
2559 7217 2.032620 AGTCCGTTGAGGTAGCTATGG 58.967 52.381 0.00 0.00 41.99 2.74
2560 7218 1.068741 GTCCGTTGAGGTAGCTATGGG 59.931 57.143 0.00 0.00 41.99 4.00
2561 7219 0.393077 CCGTTGAGGTAGCTATGGGG 59.607 60.000 0.00 0.00 34.51 4.96
2562 7220 0.249911 CGTTGAGGTAGCTATGGGGC 60.250 60.000 0.00 0.00 0.00 5.80
2563 7221 0.249911 GTTGAGGTAGCTATGGGGCG 60.250 60.000 0.00 0.00 37.29 6.13
2564 7222 0.689745 TTGAGGTAGCTATGGGGCGT 60.690 55.000 0.00 0.00 37.29 5.68
2565 7223 0.689745 TGAGGTAGCTATGGGGCGTT 60.690 55.000 0.00 0.00 37.29 4.84
2566 7224 0.033642 GAGGTAGCTATGGGGCGTTC 59.966 60.000 0.00 0.00 37.29 3.95
2567 7225 1.070957 GGTAGCTATGGGGCGTTCC 59.929 63.158 0.00 0.00 37.29 3.62
2577 7235 2.658422 GGCGTTCCCGACCAACTA 59.342 61.111 0.00 0.00 35.50 2.24
2578 7236 1.004679 GGCGTTCCCGACCAACTAA 60.005 57.895 0.00 0.00 35.50 2.24
2579 7237 1.293963 GGCGTTCCCGACCAACTAAC 61.294 60.000 0.00 0.00 35.50 2.34
2580 7238 0.600782 GCGTTCCCGACCAACTAACA 60.601 55.000 0.00 0.00 35.63 2.41
2581 7239 1.868469 CGTTCCCGACCAACTAACAA 58.132 50.000 0.00 0.00 35.63 2.83
2582 7240 2.211806 CGTTCCCGACCAACTAACAAA 58.788 47.619 0.00 0.00 35.63 2.83
2583 7241 2.809696 CGTTCCCGACCAACTAACAAAT 59.190 45.455 0.00 0.00 35.63 2.32
2584 7242 3.364565 CGTTCCCGACCAACTAACAAATG 60.365 47.826 0.00 0.00 35.63 2.32
2585 7243 2.785562 TCCCGACCAACTAACAAATGG 58.214 47.619 0.00 0.00 40.16 3.16
2586 7244 1.816224 CCCGACCAACTAACAAATGGG 59.184 52.381 0.00 0.00 38.58 4.00
2587 7245 2.553466 CCCGACCAACTAACAAATGGGA 60.553 50.000 0.00 0.00 38.58 4.37
2588 7246 3.150767 CCGACCAACTAACAAATGGGAA 58.849 45.455 0.00 0.00 38.58 3.97
2589 7247 3.761752 CCGACCAACTAACAAATGGGAAT 59.238 43.478 0.00 0.00 38.58 3.01
2590 7248 4.219725 CCGACCAACTAACAAATGGGAATT 59.780 41.667 0.00 0.00 38.58 2.17
2591 7249 5.399013 CGACCAACTAACAAATGGGAATTC 58.601 41.667 0.00 0.00 38.58 2.17
2592 7250 5.183140 CGACCAACTAACAAATGGGAATTCT 59.817 40.000 5.23 0.00 38.58 2.40
2593 7251 6.294508 CGACCAACTAACAAATGGGAATTCTT 60.295 38.462 5.23 0.00 38.58 2.52
2594 7252 7.373617 ACCAACTAACAAATGGGAATTCTTT 57.626 32.000 5.23 0.00 38.58 2.52
2595 7253 7.441836 ACCAACTAACAAATGGGAATTCTTTC 58.558 34.615 5.23 0.00 38.58 2.62
2605 7263 2.510613 GGAATTCTTTCCCGACCAACA 58.489 47.619 5.23 0.00 44.96 3.33
2606 7264 3.089284 GGAATTCTTTCCCGACCAACAT 58.911 45.455 5.23 0.00 44.96 2.71
2607 7265 3.509967 GGAATTCTTTCCCGACCAACATT 59.490 43.478 5.23 0.00 44.96 2.71
2608 7266 4.380550 GGAATTCTTTCCCGACCAACATTC 60.381 45.833 5.23 0.00 44.96 2.67
2609 7267 3.502123 TTCTTTCCCGACCAACATTCT 57.498 42.857 0.00 0.00 0.00 2.40
2610 7268 2.778299 TCTTTCCCGACCAACATTCTG 58.222 47.619 0.00 0.00 0.00 3.02
2611 7269 2.105821 TCTTTCCCGACCAACATTCTGT 59.894 45.455 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.570415 TCGGGCTTGTAACATTTGGA 57.430 45.000 0.00 0.00 0.00 3.53
49 50 2.556622 CAACCTTCGGGCTTGTAACATT 59.443 45.455 0.00 0.00 39.10 2.71
101 102 6.535150 TGCACTAATTCAGTCTATTTCTTCGG 59.465 38.462 0.00 0.00 34.26 4.30
110 111 8.677148 ACTTTCTTTTGCACTAATTCAGTCTA 57.323 30.769 0.00 0.00 34.26 2.59
152 153 8.696410 TTAAGTCACAAAAGTTTGGATGTTTC 57.304 30.769 8.55 0.00 42.34 2.78
214 220 6.183361 CGGTGGGAAATATCCTTTAGTTCCTA 60.183 42.308 10.56 3.49 45.77 2.94
215 221 5.397559 CGGTGGGAAATATCCTTTAGTTCCT 60.398 44.000 10.56 0.00 45.77 3.36
238 244 5.430886 TCAAATATGATAGATCATGCCCCG 58.569 41.667 14.07 1.32 46.34 5.73
328 334 3.568853 TCTCGATTTTAAACCGCCCAAAA 59.431 39.130 4.75 0.00 0.00 2.44
345 351 7.251994 TTTTTGGAAAAACTCGAAAATCTCGA 58.748 30.769 0.00 0.00 42.08 4.04
364 371 3.744238 ACCGGAAGAAATGGTTTTTGG 57.256 42.857 9.46 0.00 29.87 3.28
385 392 3.917300 ACCAGGTGTTATTTTTGGGACA 58.083 40.909 0.00 0.00 33.20 4.02
386 393 5.105513 CCATACCAGGTGTTATTTTTGGGAC 60.106 44.000 0.76 0.00 33.20 4.46
388 395 5.020132 TCCATACCAGGTGTTATTTTTGGG 58.980 41.667 0.76 0.00 33.20 4.12
391 398 6.663523 CCTTCTCCATACCAGGTGTTATTTTT 59.336 38.462 0.76 0.00 0.00 1.94
396 403 3.112263 CCCTTCTCCATACCAGGTGTTA 58.888 50.000 0.76 0.00 0.00 2.41
409 416 1.555533 CTACCTTCCACACCCTTCTCC 59.444 57.143 0.00 0.00 0.00 3.71
412 419 0.984995 AGCTACCTTCCACACCCTTC 59.015 55.000 0.00 0.00 0.00 3.46
418 425 0.835971 TCCAGCAGCTACCTTCCACA 60.836 55.000 0.00 0.00 0.00 4.17
442 449 0.383124 GTGTCACTCAAAGCGCGTTC 60.383 55.000 8.43 0.00 0.00 3.95
445 452 1.771073 TTGGTGTCACTCAAAGCGCG 61.771 55.000 0.00 0.00 0.00 6.86
543 550 7.254353 GGTCTAGCTCGGTAACATCAAAATAAC 60.254 40.741 0.00 0.00 0.00 1.89
554 561 4.486574 GACTATGGTCTAGCTCGGTAAC 57.513 50.000 1.27 0.00 39.24 2.50
570 577 0.839946 ATGGAAGCCGCCAAGACTAT 59.160 50.000 0.00 0.00 42.16 2.12
573 580 2.115291 GGATGGAAGCCGCCAAGAC 61.115 63.158 0.00 0.00 42.16 3.01
616 623 7.298374 ACTATCTGGATCAGGAGTAATGTACA 58.702 38.462 0.00 0.00 30.41 2.90
623 630 5.747545 GCTGAGACTATCTGGATCAGGAGTA 60.748 48.000 0.00 0.00 38.24 2.59
628 635 5.316167 ACTAGCTGAGACTATCTGGATCAG 58.684 45.833 0.00 0.00 40.26 2.90
633 640 6.952773 AACTAACTAGCTGAGACTATCTGG 57.047 41.667 0.00 0.00 0.00 3.86
654 661 4.750098 ACATGCACAGTGAAGTAGTGTAAC 59.250 41.667 4.15 0.00 40.98 2.50
673 680 3.934579 TGAACATCCGAGTGAATGACATG 59.065 43.478 0.00 0.00 0.00 3.21
742 751 5.855045 ACAACCGTCTCTTCTTTAGTGAAT 58.145 37.500 0.00 0.00 0.00 2.57
762 776 7.547370 GGGCATGCAACATATACTTTTAAACAA 59.453 33.333 21.36 0.00 0.00 2.83
772 786 4.947645 ACATTTGGGCATGCAACATATAC 58.052 39.130 21.36 0.00 0.00 1.47
784 798 0.972883 GGGCTTGTAACATTTGGGCA 59.027 50.000 0.00 0.00 0.00 5.36
794 808 0.179015 TGCAACCTTCGGGCTTGTAA 60.179 50.000 0.00 0.00 39.10 2.41
851 865 3.093814 TGGGTACGCTAATTCAGTCTCA 58.906 45.455 11.59 0.00 0.00 3.27
866 880 3.611766 ACTGCTCATGTAACTGGGTAC 57.388 47.619 0.00 0.00 0.00 3.34
876 890 3.430042 AGGAACATCAACTGCTCATGT 57.570 42.857 0.00 0.00 31.90 3.21
889 903 1.079073 CCCAAGCCCCAAGGAACAT 59.921 57.895 0.00 0.00 33.47 2.71
906 920 6.721318 TGATCCATGTTCTTTATATAGGGCC 58.279 40.000 0.00 0.00 0.00 5.80
990 1004 5.178096 TCAAATTAGCCATGTCCTTGAGA 57.822 39.130 0.00 0.00 0.00 3.27
995 1009 4.803329 ATCCTCAAATTAGCCATGTCCT 57.197 40.909 0.00 0.00 0.00 3.85
996 1010 5.625150 AGTATCCTCAAATTAGCCATGTCC 58.375 41.667 0.00 0.00 0.00 4.02
1008 1022 7.926555 GCAAACATAGCTAGTAGTATCCTCAAA 59.073 37.037 0.00 0.00 0.00 2.69
1013 1027 7.222000 AGAGCAAACATAGCTAGTAGTATCC 57.778 40.000 0.00 0.00 43.58 2.59
1016 1030 5.821470 ACGAGAGCAAACATAGCTAGTAGTA 59.179 40.000 0.00 0.00 43.58 1.82
1017 1031 4.641094 ACGAGAGCAAACATAGCTAGTAGT 59.359 41.667 0.00 0.00 43.58 2.73
1039 1053 2.417719 GAGGTGTGTCAGGAACATCAC 58.582 52.381 0.00 0.00 40.80 3.06
1051 1065 2.203938 ATGGACGGGGAGGTGTGT 60.204 61.111 0.00 0.00 0.00 3.72
1061 1075 2.202797 CAGAGACGCCATGGACGG 60.203 66.667 25.35 13.23 34.00 4.79
1062 1076 1.807165 CACAGAGACGCCATGGACG 60.807 63.158 18.40 20.56 0.00 4.79
1077 1091 4.624364 CTGCTGCCCACGGACACA 62.624 66.667 0.00 0.00 0.00 3.72
1092 1106 0.633733 CTGTAGTAACGTTCGCGCTG 59.366 55.000 2.82 0.00 46.04 5.18
1148 1162 1.136305 CAGATTGGCCATGCAAGAAGG 59.864 52.381 6.09 0.00 0.00 3.46
1162 1176 0.167470 CTGTTGCAGTCGCCAGATTG 59.833 55.000 0.00 0.00 37.19 2.67
1263 1277 2.166664 ACTGTTCAGAGTTAGGATCGCC 59.833 50.000 6.83 0.00 0.00 5.54
1284 1298 1.006571 GTCTCCACCTCGTGCGAAA 60.007 57.895 0.00 0.00 31.34 3.46
1417 1431 2.359354 CCCGTTCCCGTTGATGCA 60.359 61.111 0.00 0.00 0.00 3.96
1440 1454 2.360350 ACGACCTTGGCCAGCATG 60.360 61.111 5.11 0.00 0.00 4.06
1441 1455 2.045926 GACGACCTTGGCCAGCAT 60.046 61.111 5.11 0.00 0.00 3.79
1488 1502 1.224069 GCTCGAAGTTGTGCTCAGCA 61.224 55.000 0.00 0.00 35.60 4.41
1491 1505 0.880278 GTGGCTCGAAGTTGTGCTCA 60.880 55.000 0.00 0.00 0.00 4.26
1512 1526 1.752498 TCTACGTCGTTGTATGGGCAT 59.248 47.619 1.78 0.00 0.00 4.40
1535 1549 2.746412 CTTCCACATGGCCGGTGACA 62.746 60.000 24.47 10.79 38.54 3.58
1546 1560 4.431131 CCCCAGCGCCTTCCACAT 62.431 66.667 2.29 0.00 0.00 3.21
1596 1610 3.865446 CATAGCTCACACATCAGACCAA 58.135 45.455 0.00 0.00 0.00 3.67
1625 1639 5.064707 CGTGTACATAGCTTAATGCAAGGTT 59.935 40.000 0.00 0.00 42.32 3.50
1659 1673 3.809832 ACAACGCACATATCTATGCTTCC 59.190 43.478 0.00 0.00 39.79 3.46
1684 4299 1.529244 AGCAACTCCACCACCAAGC 60.529 57.895 0.00 0.00 0.00 4.01
1687 4302 1.414866 TAGCAGCAACTCCACCACCA 61.415 55.000 0.00 0.00 0.00 4.17
1708 4323 7.497595 TCTGTAGTGGTGGTAGCATATTTTAG 58.502 38.462 0.00 0.00 0.00 1.85
1716 4331 4.101898 TCTTTTTCTGTAGTGGTGGTAGCA 59.898 41.667 0.00 0.00 0.00 3.49
1719 4334 5.104859 TGTGTCTTTTTCTGTAGTGGTGGTA 60.105 40.000 0.00 0.00 0.00 3.25
1725 4340 4.750098 ACGGATGTGTCTTTTTCTGTAGTG 59.250 41.667 0.00 0.00 0.00 2.74
1726 4341 4.957296 ACGGATGTGTCTTTTTCTGTAGT 58.043 39.130 0.00 0.00 0.00 2.73
1727 4342 6.399669 CGTTACGGATGTGTCTTTTTCTGTAG 60.400 42.308 0.00 0.00 32.97 2.74
1728 4343 5.403166 CGTTACGGATGTGTCTTTTTCTGTA 59.597 40.000 0.00 0.00 0.00 2.74
1729 4344 4.210537 CGTTACGGATGTGTCTTTTTCTGT 59.789 41.667 0.00 0.00 0.00 3.41
1730 4345 4.446385 TCGTTACGGATGTGTCTTTTTCTG 59.554 41.667 4.53 0.00 0.00 3.02
1731 4346 4.624015 TCGTTACGGATGTGTCTTTTTCT 58.376 39.130 4.53 0.00 0.00 2.52
1732 4347 4.977741 TCGTTACGGATGTGTCTTTTTC 57.022 40.909 4.53 0.00 0.00 2.29
1734 4349 5.934935 ATTTCGTTACGGATGTGTCTTTT 57.065 34.783 4.53 0.00 0.00 2.27
1735 4350 5.934935 AATTTCGTTACGGATGTGTCTTT 57.065 34.783 4.53 0.00 0.00 2.52
1736 4351 5.934935 AAATTTCGTTACGGATGTGTCTT 57.065 34.783 4.53 0.00 0.00 3.01
1737 4352 5.934935 AAAATTTCGTTACGGATGTGTCT 57.065 34.783 4.53 0.00 0.00 3.41
1781 5105 9.916397 GGTTTTGTAACAATTATCGTCATAGAG 57.084 33.333 0.00 0.00 35.92 2.43
1799 5123 6.734502 TCTATGATGATACCGGGTTTTGTA 57.265 37.500 4.31 0.00 0.00 2.41
1896 5222 4.158394 GGTCCAAAGAATTTCATGCAGCTA 59.842 41.667 0.00 0.00 35.03 3.32
2034 6683 4.986645 ATGCCTCGCACACACGCA 62.987 61.111 0.00 0.00 43.04 5.24
2273 6931 0.615331 TCCTGTTCATCCAGAGGCAC 59.385 55.000 0.00 0.00 34.23 5.01
2304 6962 5.815740 GGGAATATAGTGTTGTGGTGTAGTG 59.184 44.000 0.00 0.00 0.00 2.74
2305 6963 5.486063 TGGGAATATAGTGTTGTGGTGTAGT 59.514 40.000 0.00 0.00 0.00 2.73
2306 6964 5.984725 TGGGAATATAGTGTTGTGGTGTAG 58.015 41.667 0.00 0.00 0.00 2.74
2307 6965 5.628200 GCTGGGAATATAGTGTTGTGGTGTA 60.628 44.000 0.00 0.00 0.00 2.90
2308 6966 4.843728 CTGGGAATATAGTGTTGTGGTGT 58.156 43.478 0.00 0.00 0.00 4.16
2309 6967 3.627577 GCTGGGAATATAGTGTTGTGGTG 59.372 47.826 0.00 0.00 0.00 4.17
2310 6968 3.265737 TGCTGGGAATATAGTGTTGTGGT 59.734 43.478 0.00 0.00 0.00 4.16
2311 6969 3.879295 CTGCTGGGAATATAGTGTTGTGG 59.121 47.826 0.00 0.00 0.00 4.17
2312 6970 3.313526 GCTGCTGGGAATATAGTGTTGTG 59.686 47.826 0.00 0.00 0.00 3.33
2313 6971 3.545703 GCTGCTGGGAATATAGTGTTGT 58.454 45.455 0.00 0.00 0.00 3.32
2314 6972 2.880890 GGCTGCTGGGAATATAGTGTTG 59.119 50.000 0.00 0.00 0.00 3.33
2315 6973 2.509548 TGGCTGCTGGGAATATAGTGTT 59.490 45.455 0.00 0.00 0.00 3.32
2316 6974 2.126882 TGGCTGCTGGGAATATAGTGT 58.873 47.619 0.00 0.00 0.00 3.55
2317 6975 2.936919 TGGCTGCTGGGAATATAGTG 57.063 50.000 0.00 0.00 0.00 2.74
2318 6976 2.780010 ACTTGGCTGCTGGGAATATAGT 59.220 45.455 0.00 0.00 0.00 2.12
2319 6977 3.498774 ACTTGGCTGCTGGGAATATAG 57.501 47.619 0.00 0.00 0.00 1.31
2320 6978 3.554934 CAACTTGGCTGCTGGGAATATA 58.445 45.455 0.00 0.00 0.00 0.86
2321 6979 2.381911 CAACTTGGCTGCTGGGAATAT 58.618 47.619 0.00 0.00 0.00 1.28
2322 6980 1.616725 CCAACTTGGCTGCTGGGAATA 60.617 52.381 0.00 0.00 0.00 1.75
2323 6981 0.901580 CCAACTTGGCTGCTGGGAAT 60.902 55.000 0.00 0.00 0.00 3.01
2324 6982 1.531365 CCAACTTGGCTGCTGGGAA 60.531 57.895 0.00 0.00 0.00 3.97
2325 6983 2.115910 CCAACTTGGCTGCTGGGA 59.884 61.111 0.00 0.00 0.00 4.37
2326 6984 1.833934 AACCAACTTGGCTGCTGGG 60.834 57.895 7.81 0.00 42.67 4.45
2327 6985 1.364901 CAACCAACTTGGCTGCTGG 59.635 57.895 7.81 0.97 42.67 4.85
2328 6986 1.364901 CCAACCAACTTGGCTGCTG 59.635 57.895 7.81 0.98 43.37 4.41
2329 6987 3.860681 CCAACCAACTTGGCTGCT 58.139 55.556 7.81 0.00 43.37 4.24
2335 6993 4.871933 AGCTATTTTCCCAACCAACTTG 57.128 40.909 0.00 0.00 0.00 3.16
2336 6994 5.508994 CGAAAGCTATTTTCCCAACCAACTT 60.509 40.000 0.00 0.00 41.78 2.66
2337 6995 4.022329 CGAAAGCTATTTTCCCAACCAACT 60.022 41.667 0.00 0.00 41.78 3.16
2338 6996 4.234574 CGAAAGCTATTTTCCCAACCAAC 58.765 43.478 0.00 0.00 41.78 3.77
2339 6997 3.892588 ACGAAAGCTATTTTCCCAACCAA 59.107 39.130 0.00 0.00 41.78 3.67
2340 6998 3.492337 ACGAAAGCTATTTTCCCAACCA 58.508 40.909 0.00 0.00 41.78 3.67
2341 6999 3.504520 TGACGAAAGCTATTTTCCCAACC 59.495 43.478 0.00 0.00 41.78 3.77
2342 7000 4.759516 TGACGAAAGCTATTTTCCCAAC 57.240 40.909 0.00 0.00 41.78 3.77
2343 7001 4.580995 TGTTGACGAAAGCTATTTTCCCAA 59.419 37.500 0.00 0.00 41.78 4.12
2344 7002 4.023536 GTGTTGACGAAAGCTATTTTCCCA 60.024 41.667 0.00 0.00 41.78 4.37
2345 7003 4.023536 TGTGTTGACGAAAGCTATTTTCCC 60.024 41.667 0.00 0.00 41.78 3.97
2346 7004 4.909880 GTGTGTTGACGAAAGCTATTTTCC 59.090 41.667 0.00 0.00 41.78 3.13
2347 7005 5.507077 TGTGTGTTGACGAAAGCTATTTTC 58.493 37.500 0.00 0.00 41.46 2.29
2348 7006 5.065988 ACTGTGTGTTGACGAAAGCTATTTT 59.934 36.000 0.00 0.00 0.00 1.82
2349 7007 4.574828 ACTGTGTGTTGACGAAAGCTATTT 59.425 37.500 0.00 0.00 0.00 1.40
2350 7008 4.127171 ACTGTGTGTTGACGAAAGCTATT 58.873 39.130 0.00 0.00 0.00 1.73
2351 7009 3.728845 ACTGTGTGTTGACGAAAGCTAT 58.271 40.909 0.00 0.00 0.00 2.97
2352 7010 3.120792 GACTGTGTGTTGACGAAAGCTA 58.879 45.455 0.00 0.00 0.00 3.32
2353 7011 1.933853 GACTGTGTGTTGACGAAAGCT 59.066 47.619 0.00 0.00 0.00 3.74
2354 7012 1.332028 CGACTGTGTGTTGACGAAAGC 60.332 52.381 0.00 0.00 31.68 3.51
2355 7013 1.257936 CCGACTGTGTGTTGACGAAAG 59.742 52.381 0.00 0.00 31.68 2.62
2356 7014 1.282817 CCGACTGTGTGTTGACGAAA 58.717 50.000 0.00 0.00 31.68 3.46
2357 7015 0.173935 ACCGACTGTGTGTTGACGAA 59.826 50.000 0.00 0.00 31.68 3.85
2358 7016 0.248743 GACCGACTGTGTGTTGACGA 60.249 55.000 0.00 0.00 31.68 4.20
2359 7017 1.537289 CGACCGACTGTGTGTTGACG 61.537 60.000 0.00 0.00 31.68 4.35
2360 7018 1.213094 CCGACCGACTGTGTGTTGAC 61.213 60.000 0.00 0.00 31.68 3.18
2361 7019 1.066752 CCGACCGACTGTGTGTTGA 59.933 57.895 0.00 0.00 31.68 3.18
2362 7020 1.954146 CCCGACCGACTGTGTGTTG 60.954 63.158 0.00 0.00 0.00 3.33
2363 7021 1.678598 TTCCCGACCGACTGTGTGTT 61.679 55.000 0.00 0.00 0.00 3.32
2364 7022 1.678598 TTTCCCGACCGACTGTGTGT 61.679 55.000 0.00 0.00 0.00 3.72
2365 7023 0.944311 CTTTCCCGACCGACTGTGTG 60.944 60.000 0.00 0.00 0.00 3.82
2366 7024 1.111116 TCTTTCCCGACCGACTGTGT 61.111 55.000 0.00 0.00 0.00 3.72
2367 7025 0.666577 GTCTTTCCCGACCGACTGTG 60.667 60.000 0.00 0.00 0.00 3.66
2368 7026 0.826672 AGTCTTTCCCGACCGACTGT 60.827 55.000 0.00 0.00 35.56 3.55
2369 7027 1.171308 TAGTCTTTCCCGACCGACTG 58.829 55.000 0.00 0.00 37.32 3.51
2370 7028 2.140839 ATAGTCTTTCCCGACCGACT 57.859 50.000 0.00 0.00 39.76 4.18
2371 7029 2.537401 CAATAGTCTTTCCCGACCGAC 58.463 52.381 0.00 0.00 34.46 4.79
2372 7030 1.134907 GCAATAGTCTTTCCCGACCGA 60.135 52.381 0.00 0.00 34.46 4.69
2373 7031 1.287425 GCAATAGTCTTTCCCGACCG 58.713 55.000 0.00 0.00 34.46 4.79
2374 7032 1.664873 GGCAATAGTCTTTCCCGACC 58.335 55.000 0.00 0.00 34.46 4.79
2375 7033 1.134907 TCGGCAATAGTCTTTCCCGAC 60.135 52.381 0.00 0.00 39.63 4.79
2376 7034 1.134907 GTCGGCAATAGTCTTTCCCGA 60.135 52.381 0.00 0.00 41.94 5.14
2377 7035 1.287425 GTCGGCAATAGTCTTTCCCG 58.713 55.000 0.00 0.00 37.21 5.14
2378 7036 1.664873 GGTCGGCAATAGTCTTTCCC 58.335 55.000 0.00 0.00 0.00 3.97
2379 7037 1.134907 TCGGTCGGCAATAGTCTTTCC 60.135 52.381 0.00 0.00 0.00 3.13
2380 7038 2.288961 TCGGTCGGCAATAGTCTTTC 57.711 50.000 0.00 0.00 0.00 2.62
2381 7039 2.167693 TGATCGGTCGGCAATAGTCTTT 59.832 45.455 0.00 0.00 0.00 2.52
2382 7040 1.754803 TGATCGGTCGGCAATAGTCTT 59.245 47.619 0.00 0.00 0.00 3.01
2383 7041 1.338337 CTGATCGGTCGGCAATAGTCT 59.662 52.381 0.00 0.00 0.00 3.24
2384 7042 1.603172 CCTGATCGGTCGGCAATAGTC 60.603 57.143 0.00 0.00 0.00 2.59
2385 7043 0.389391 CCTGATCGGTCGGCAATAGT 59.611 55.000 0.00 0.00 0.00 2.12
2386 7044 0.389391 ACCTGATCGGTCGGCAATAG 59.611 55.000 0.00 0.00 44.93 1.73
2387 7045 2.511818 ACCTGATCGGTCGGCAATA 58.488 52.632 0.00 0.00 44.93 1.90
2388 7046 3.309582 ACCTGATCGGTCGGCAAT 58.690 55.556 0.00 0.00 44.93 3.56
2396 7054 1.221840 CCCCAACAGACCTGATCGG 59.778 63.158 3.76 0.00 39.35 4.18
2397 7055 0.613260 TTCCCCAACAGACCTGATCG 59.387 55.000 3.76 0.00 0.00 3.69
2398 7056 2.040412 ACTTTCCCCAACAGACCTGATC 59.960 50.000 3.76 0.00 0.00 2.92
2399 7057 2.040412 GACTTTCCCCAACAGACCTGAT 59.960 50.000 3.76 0.00 0.00 2.90
2400 7058 1.420138 GACTTTCCCCAACAGACCTGA 59.580 52.381 3.76 0.00 0.00 3.86
2401 7059 1.545651 GGACTTTCCCCAACAGACCTG 60.546 57.143 0.00 0.00 0.00 4.00
2402 7060 0.771755 GGACTTTCCCCAACAGACCT 59.228 55.000 0.00 0.00 0.00 3.85
2403 7061 0.476771 TGGACTTTCCCCAACAGACC 59.523 55.000 0.00 0.00 35.03 3.85
2404 7062 1.420138 TCTGGACTTTCCCCAACAGAC 59.580 52.381 0.00 0.00 35.03 3.51
2405 7063 1.420138 GTCTGGACTTTCCCCAACAGA 59.580 52.381 0.00 0.00 35.03 3.41
2406 7064 1.878102 CGTCTGGACTTTCCCCAACAG 60.878 57.143 0.00 0.00 35.03 3.16
2407 7065 0.107831 CGTCTGGACTTTCCCCAACA 59.892 55.000 0.00 0.00 35.03 3.33
2408 7066 0.605589 CCGTCTGGACTTTCCCCAAC 60.606 60.000 0.00 0.00 35.03 3.77
2409 7067 1.758592 CCGTCTGGACTTTCCCCAA 59.241 57.895 0.00 0.00 35.03 4.12
2410 7068 2.221299 CCCGTCTGGACTTTCCCCA 61.221 63.158 0.00 0.00 35.03 4.96
2411 7069 1.486145 TTCCCGTCTGGACTTTCCCC 61.486 60.000 0.00 0.00 45.11 4.81
2412 7070 0.399075 TTTCCCGTCTGGACTTTCCC 59.601 55.000 0.00 0.00 45.11 3.97
2413 7071 1.809684 CTTTCCCGTCTGGACTTTCC 58.190 55.000 0.00 0.00 45.11 3.13
2414 7072 1.157585 GCTTTCCCGTCTGGACTTTC 58.842 55.000 0.00 0.00 45.11 2.62
2415 7073 0.250770 GGCTTTCCCGTCTGGACTTT 60.251 55.000 0.00 0.00 45.11 2.66
2416 7074 1.375326 GGCTTTCCCGTCTGGACTT 59.625 57.895 0.00 0.00 45.11 3.01
2417 7075 2.593956 GGGCTTTCCCGTCTGGACT 61.594 63.158 0.00 0.00 45.11 3.85
2418 7076 2.046217 GGGCTTTCCCGTCTGGAC 60.046 66.667 0.00 0.00 45.11 4.02
2428 7086 0.538746 TTGGTCGGGAAAGGGCTTTC 60.539 55.000 0.00 0.00 46.03 2.62
2429 7087 0.826256 GTTGGTCGGGAAAGGGCTTT 60.826 55.000 0.00 0.00 35.14 3.51
2430 7088 1.228459 GTTGGTCGGGAAAGGGCTT 60.228 57.895 0.00 0.00 0.00 4.35
2431 7089 1.789576 ATGTTGGTCGGGAAAGGGCT 61.790 55.000 0.00 0.00 0.00 5.19
2432 7090 0.034863 TATGTTGGTCGGGAAAGGGC 60.035 55.000 0.00 0.00 0.00 5.19
2433 7091 2.172717 AGATATGTTGGTCGGGAAAGGG 59.827 50.000 0.00 0.00 0.00 3.95
2434 7092 3.560636 AGATATGTTGGTCGGGAAAGG 57.439 47.619 0.00 0.00 0.00 3.11
2435 7093 4.335594 GGAAAGATATGTTGGTCGGGAAAG 59.664 45.833 0.00 0.00 0.00 2.62
2436 7094 4.266714 GGAAAGATATGTTGGTCGGGAAA 58.733 43.478 0.00 0.00 0.00 3.13
2437 7095 3.371166 GGGAAAGATATGTTGGTCGGGAA 60.371 47.826 0.00 0.00 0.00 3.97
2438 7096 2.171870 GGGAAAGATATGTTGGTCGGGA 59.828 50.000 0.00 0.00 0.00 5.14
2439 7097 2.092646 TGGGAAAGATATGTTGGTCGGG 60.093 50.000 0.00 0.00 0.00 5.14
2440 7098 3.275617 TGGGAAAGATATGTTGGTCGG 57.724 47.619 0.00 0.00 0.00 4.79
2441 7099 3.377172 GGTTGGGAAAGATATGTTGGTCG 59.623 47.826 0.00 0.00 0.00 4.79
2442 7100 3.377172 CGGTTGGGAAAGATATGTTGGTC 59.623 47.826 0.00 0.00 0.00 4.02
2443 7101 3.009695 TCGGTTGGGAAAGATATGTTGGT 59.990 43.478 0.00 0.00 0.00 3.67
2444 7102 3.377172 GTCGGTTGGGAAAGATATGTTGG 59.623 47.826 0.00 0.00 0.00 3.77
2445 7103 4.094887 CAGTCGGTTGGGAAAGATATGTTG 59.905 45.833 0.00 0.00 0.00 3.33
2446 7104 4.261801 CAGTCGGTTGGGAAAGATATGTT 58.738 43.478 0.00 0.00 0.00 2.71
2447 7105 3.873910 CAGTCGGTTGGGAAAGATATGT 58.126 45.455 0.00 0.00 0.00 2.29
2448 7106 2.614057 GCAGTCGGTTGGGAAAGATATG 59.386 50.000 0.00 0.00 0.00 1.78
2449 7107 2.505819 AGCAGTCGGTTGGGAAAGATAT 59.494 45.455 0.00 0.00 0.00 1.63
2450 7108 1.906574 AGCAGTCGGTTGGGAAAGATA 59.093 47.619 0.00 0.00 0.00 1.98
2451 7109 0.693049 AGCAGTCGGTTGGGAAAGAT 59.307 50.000 0.00 0.00 0.00 2.40
2452 7110 0.472471 AAGCAGTCGGTTGGGAAAGA 59.528 50.000 0.00 0.00 0.00 2.52
2453 7111 0.593128 CAAGCAGTCGGTTGGGAAAG 59.407 55.000 0.00 0.00 45.01 2.62
2454 7112 2.714259 CAAGCAGTCGGTTGGGAAA 58.286 52.632 0.00 0.00 45.01 3.13
2455 7113 4.473643 CAAGCAGTCGGTTGGGAA 57.526 55.556 0.00 0.00 45.01 3.97
2463 7121 1.756375 GCATAGCCGTCAAGCAGTCG 61.756 60.000 0.00 0.00 34.23 4.18
2464 7122 0.460987 AGCATAGCCGTCAAGCAGTC 60.461 55.000 0.00 0.00 34.23 3.51
2465 7123 0.742281 CAGCATAGCCGTCAAGCAGT 60.742 55.000 0.00 0.00 34.23 4.40
2466 7124 0.742281 ACAGCATAGCCGTCAAGCAG 60.742 55.000 0.00 0.00 34.23 4.24
2467 7125 0.534873 TACAGCATAGCCGTCAAGCA 59.465 50.000 0.00 0.00 34.23 3.91
2468 7126 1.795286 GATACAGCATAGCCGTCAAGC 59.205 52.381 0.00 0.00 0.00 4.01
2469 7127 3.377346 AGATACAGCATAGCCGTCAAG 57.623 47.619 0.00 0.00 0.00 3.02
2470 7128 3.819564 AAGATACAGCATAGCCGTCAA 57.180 42.857 0.00 0.00 0.00 3.18
2471 7129 3.492656 GGAAAGATACAGCATAGCCGTCA 60.493 47.826 0.00 0.00 0.00 4.35
2472 7130 3.060602 GGAAAGATACAGCATAGCCGTC 58.939 50.000 0.00 0.00 0.00 4.79
2473 7131 2.224305 GGGAAAGATACAGCATAGCCGT 60.224 50.000 0.00 0.00 0.00 5.68
2474 7132 2.417719 GGGAAAGATACAGCATAGCCG 58.582 52.381 0.00 0.00 0.00 5.52
2475 7133 2.037251 TCGGGAAAGATACAGCATAGCC 59.963 50.000 0.00 0.00 0.00 3.93
2476 7134 3.060602 GTCGGGAAAGATACAGCATAGC 58.939 50.000 0.00 0.00 0.00 2.97
2477 7135 3.069586 TGGTCGGGAAAGATACAGCATAG 59.930 47.826 0.00 0.00 0.00 2.23
2478 7136 3.035363 TGGTCGGGAAAGATACAGCATA 58.965 45.455 0.00 0.00 0.00 3.14
2479 7137 1.837439 TGGTCGGGAAAGATACAGCAT 59.163 47.619 0.00 0.00 0.00 3.79
2480 7138 1.271856 TGGTCGGGAAAGATACAGCA 58.728 50.000 0.00 0.00 0.00 4.41
2481 7139 2.007608 GTTGGTCGGGAAAGATACAGC 58.992 52.381 0.00 0.00 0.00 4.40
2482 7140 3.328382 TGTTGGTCGGGAAAGATACAG 57.672 47.619 0.00 0.00 0.00 2.74
2483 7141 3.773418 TTGTTGGTCGGGAAAGATACA 57.227 42.857 0.00 0.00 0.00 2.29
2484 7142 4.514401 AGATTGTTGGTCGGGAAAGATAC 58.486 43.478 0.00 0.00 0.00 2.24
2485 7143 4.837093 AGATTGTTGGTCGGGAAAGATA 57.163 40.909 0.00 0.00 0.00 1.98
2486 7144 3.721087 AGATTGTTGGTCGGGAAAGAT 57.279 42.857 0.00 0.00 0.00 2.40
2487 7145 3.502123 AAGATTGTTGGTCGGGAAAGA 57.498 42.857 0.00 0.00 0.00 2.52
2488 7146 4.298332 CAAAAGATTGTTGGTCGGGAAAG 58.702 43.478 0.00 0.00 0.00 2.62
2489 7147 3.068873 CCAAAAGATTGTTGGTCGGGAAA 59.931 43.478 0.00 0.00 40.64 3.13
2490 7148 2.625790 CCAAAAGATTGTTGGTCGGGAA 59.374 45.455 0.00 0.00 40.64 3.97
2491 7149 2.235016 CCAAAAGATTGTTGGTCGGGA 58.765 47.619 0.00 0.00 40.64 5.14
2492 7150 1.272212 CCCAAAAGATTGTTGGTCGGG 59.728 52.381 2.73 0.00 43.48 5.14
2493 7151 1.336795 GCCCAAAAGATTGTTGGTCGG 60.337 52.381 2.73 0.00 43.48 4.79
2494 7152 1.336795 GGCCCAAAAGATTGTTGGTCG 60.337 52.381 0.00 0.00 43.48 4.79
2495 7153 1.970640 AGGCCCAAAAGATTGTTGGTC 59.029 47.619 0.00 0.00 43.48 4.02
2496 7154 1.693606 CAGGCCCAAAAGATTGTTGGT 59.306 47.619 0.00 0.00 43.48 3.67
2497 7155 1.608801 GCAGGCCCAAAAGATTGTTGG 60.609 52.381 0.00 0.00 44.42 3.77
2498 7156 1.608801 GGCAGGCCCAAAAGATTGTTG 60.609 52.381 0.00 0.00 34.60 3.33
2499 7157 0.686789 GGCAGGCCCAAAAGATTGTT 59.313 50.000 0.00 0.00 34.60 2.83
2500 7158 0.471591 TGGCAGGCCCAAAAGATTGT 60.472 50.000 8.02 0.00 41.82 2.71
2501 7159 2.364353 TGGCAGGCCCAAAAGATTG 58.636 52.632 8.02 0.00 41.82 2.67
2502 7160 4.973174 TGGCAGGCCCAAAAGATT 57.027 50.000 8.02 0.00 41.82 2.40
2522 7180 0.822121 ACTGTTGGTCGGGAAAAGCC 60.822 55.000 0.00 0.00 0.00 4.35
2523 7181 0.591659 GACTGTTGGTCGGGAAAAGC 59.408 55.000 0.00 0.00 35.07 3.51
2524 7182 1.235724 GGACTGTTGGTCGGGAAAAG 58.764 55.000 0.00 0.00 45.35 2.27
2525 7183 0.533308 CGGACTGTTGGTCGGGAAAA 60.533 55.000 0.00 0.00 45.35 2.29
2526 7184 1.070105 CGGACTGTTGGTCGGGAAA 59.930 57.895 0.00 0.00 45.35 3.13
2527 7185 1.688269 AACGGACTGTTGGTCGGGAA 61.688 55.000 0.00 0.00 45.66 3.97
2528 7186 2.135581 AACGGACTGTTGGTCGGGA 61.136 57.895 0.00 0.00 45.66 5.14
2529 7187 2.424302 AACGGACTGTTGGTCGGG 59.576 61.111 0.00 0.00 45.66 5.14
2536 7194 1.339097 AGCTACCTCAACGGACTGTT 58.661 50.000 0.00 0.00 43.09 3.16
2537 7195 2.211250 TAGCTACCTCAACGGACTGT 57.789 50.000 0.00 0.00 36.31 3.55
2538 7196 2.223829 CCATAGCTACCTCAACGGACTG 60.224 54.545 0.00 0.00 36.31 3.51
2539 7197 2.032620 CCATAGCTACCTCAACGGACT 58.967 52.381 0.00 0.00 36.31 3.85
2540 7198 1.068741 CCCATAGCTACCTCAACGGAC 59.931 57.143 0.00 0.00 36.31 4.79
2541 7199 1.410004 CCCATAGCTACCTCAACGGA 58.590 55.000 0.00 0.00 36.31 4.69
2542 7200 0.393077 CCCCATAGCTACCTCAACGG 59.607 60.000 0.00 0.00 39.35 4.44
2543 7201 0.249911 GCCCCATAGCTACCTCAACG 60.250 60.000 0.00 0.00 0.00 4.10
2544 7202 0.249911 CGCCCCATAGCTACCTCAAC 60.250 60.000 0.00 0.00 0.00 3.18
2545 7203 0.689745 ACGCCCCATAGCTACCTCAA 60.690 55.000 0.00 0.00 0.00 3.02
2546 7204 0.689745 AACGCCCCATAGCTACCTCA 60.690 55.000 0.00 0.00 0.00 3.86
2547 7205 0.033642 GAACGCCCCATAGCTACCTC 59.966 60.000 0.00 0.00 0.00 3.85
2548 7206 1.408453 GGAACGCCCCATAGCTACCT 61.408 60.000 0.00 0.00 0.00 3.08
2549 7207 1.070957 GGAACGCCCCATAGCTACC 59.929 63.158 0.00 0.00 0.00 3.18
2550 7208 4.773209 GGAACGCCCCATAGCTAC 57.227 61.111 0.00 0.00 0.00 3.58
2563 7221 3.057806 CCATTTGTTAGTTGGTCGGGAAC 60.058 47.826 0.00 0.00 0.00 3.62
2564 7222 3.150767 CCATTTGTTAGTTGGTCGGGAA 58.849 45.455 0.00 0.00 0.00 3.97
2565 7223 2.553466 CCCATTTGTTAGTTGGTCGGGA 60.553 50.000 0.00 0.00 32.60 5.14
2566 7224 1.816224 CCCATTTGTTAGTTGGTCGGG 59.184 52.381 0.00 0.00 0.00 5.14
2567 7225 2.785562 TCCCATTTGTTAGTTGGTCGG 58.214 47.619 0.00 0.00 0.00 4.79
2568 7226 5.183140 AGAATTCCCATTTGTTAGTTGGTCG 59.817 40.000 0.65 0.00 0.00 4.79
2569 7227 6.590234 AGAATTCCCATTTGTTAGTTGGTC 57.410 37.500 0.65 0.00 0.00 4.02
2570 7228 6.994421 AAGAATTCCCATTTGTTAGTTGGT 57.006 33.333 0.65 0.00 0.00 3.67
2571 7229 7.889589 GAAAGAATTCCCATTTGTTAGTTGG 57.110 36.000 0.65 0.00 0.00 3.77
2586 7244 4.459337 AGAATGTTGGTCGGGAAAGAATTC 59.541 41.667 0.00 0.00 34.66 2.17
2587 7245 4.218417 CAGAATGTTGGTCGGGAAAGAATT 59.782 41.667 0.00 0.00 0.00 2.17
2588 7246 3.758554 CAGAATGTTGGTCGGGAAAGAAT 59.241 43.478 0.00 0.00 0.00 2.40
2589 7247 3.146066 CAGAATGTTGGTCGGGAAAGAA 58.854 45.455 0.00 0.00 0.00 2.52
2590 7248 2.778299 CAGAATGTTGGTCGGGAAAGA 58.222 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.