Multiple sequence alignment - TraesCS5A01G432000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G432000 chr5A 100.000 7284 0 0 1 7284 616517209 616524492 0.000000e+00 13452.0
1 TraesCS5A01G432000 chr5A 81.395 129 17 6 7158 7280 12016283 12016410 1.670000e-16 99.0
2 TraesCS5A01G432000 chr5B 89.252 5443 303 146 1013 6358 609138852 609144109 0.000000e+00 6551.0
3 TraesCS5A01G432000 chr5B 85.287 802 66 29 6362 7143 609144157 609144926 0.000000e+00 780.0
4 TraesCS5A01G432000 chr5B 76.873 921 88 53 54 902 609133485 609134352 8.800000e-109 405.0
5 TraesCS5A01G432000 chr5B 81.197 117 16 2 7170 7280 617082189 617082073 1.010000e-13 89.8
6 TraesCS5A01G432000 chr5D 92.949 2255 113 25 4126 6355 493377650 493379883 0.000000e+00 3241.0
7 TraesCS5A01G432000 chr5D 84.962 2886 195 108 97 2860 493373674 493376442 0.000000e+00 2704.0
8 TraesCS5A01G432000 chr5D 93.433 1203 61 13 2845 4040 493376461 493377652 0.000000e+00 1768.0
9 TraesCS5A01G432000 chr5D 83.068 1193 126 38 2259 3421 123806384 123805238 0.000000e+00 1014.0
10 TraesCS5A01G432000 chr5D 87.594 798 57 22 6382 7143 493379947 493380738 0.000000e+00 887.0
11 TraesCS5A01G432000 chr5D 86.357 689 64 16 3595 4260 123805243 123804562 0.000000e+00 725.0
12 TraesCS5A01G432000 chr5D 82.132 319 43 7 1742 2060 123806822 123806518 2.020000e-65 261.0
13 TraesCS5A01G432000 chr6A 82.191 1196 135 42 2259 3421 397205468 397206618 0.000000e+00 957.0
14 TraesCS5A01G432000 chr6A 86.067 689 65 14 3595 4260 397206613 397207293 0.000000e+00 712.0
15 TraesCS5A01G432000 chr6A 85.547 685 71 15 3598 4260 58177017 58176339 0.000000e+00 691.0
16 TraesCS5A01G432000 chr6A 80.876 685 72 30 2259 2911 58185773 58185116 1.100000e-132 484.0
17 TraesCS5A01G432000 chr6A 83.654 520 68 13 2903 3421 58177518 58177015 2.380000e-129 473.0
18 TraesCS5A01G432000 chr6A 81.734 323 45 7 1738 2060 397205026 397205334 2.610000e-64 257.0
19 TraesCS5A01G432000 chr6A 88.776 98 11 0 1928 2025 58194907 58194810 3.570000e-23 121.0
20 TraesCS5A01G432000 chr6A 85.593 118 10 3 7158 7269 578047910 578048026 4.620000e-22 117.0
21 TraesCS5A01G432000 chr6B 86.931 681 60 14 3598 4255 4417218 4416544 0.000000e+00 737.0
22 TraesCS5A01G432000 chr6B 86.404 684 63 15 3595 4255 550599364 550600040 0.000000e+00 721.0
23 TraesCS5A01G432000 chr6B 84.725 491 57 12 2932 3421 550598896 550599369 6.610000e-130 475.0
24 TraesCS5A01G432000 chr6B 83.707 491 57 17 2932 3421 4417684 4417216 6.710000e-120 442.0
25 TraesCS5A01G432000 chr6B 85.714 133 12 3 7158 7284 451489193 451489324 4.580000e-27 134.0
26 TraesCS5A01G432000 chr2A 85.468 695 61 19 3595 4255 423190845 423191533 0.000000e+00 688.0
27 TraesCS5A01G432000 chr2A 83.503 491 58 17 2932 3421 423190382 423190850 3.120000e-118 436.0
28 TraesCS5A01G432000 chrUn 84.335 466 43 16 3818 4260 34744925 34744467 5.220000e-116 429.0
29 TraesCS5A01G432000 chr2B 82.738 168 20 9 3444 3608 202494334 202494495 2.740000e-29 141.0
30 TraesCS5A01G432000 chr7A 84.848 132 13 5 7159 7284 438525761 438525631 7.670000e-25 126.0
31 TraesCS5A01G432000 chr7A 91.250 80 5 2 7158 7236 16295195 16295273 2.780000e-19 108.0
32 TraesCS5A01G432000 chr6D 83.621 116 12 3 7158 7267 451079902 451079788 1.290000e-17 102.0
33 TraesCS5A01G432000 chr1A 83.621 116 11 4 7176 7284 5323685 5323799 1.290000e-17 102.0
34 TraesCS5A01G432000 chr1B 80.000 130 15 8 7163 7284 611740816 611740690 1.300000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G432000 chr5A 616517209 616524492 7283 False 13452.000000 13452 100.000000 1 7284 1 chr5A.!!$F2 7283
1 TraesCS5A01G432000 chr5B 609138852 609144926 6074 False 3665.500000 6551 87.269500 1013 7143 2 chr5B.!!$F2 6130
2 TraesCS5A01G432000 chr5B 609133485 609134352 867 False 405.000000 405 76.873000 54 902 1 chr5B.!!$F1 848
3 TraesCS5A01G432000 chr5D 493373674 493380738 7064 False 2150.000000 3241 89.734500 97 7143 4 chr5D.!!$F1 7046
4 TraesCS5A01G432000 chr5D 123804562 123806822 2260 True 666.666667 1014 83.852333 1742 4260 3 chr5D.!!$R1 2518
5 TraesCS5A01G432000 chr6A 397205026 397207293 2267 False 642.000000 957 83.330667 1738 4260 3 chr6A.!!$F2 2522
6 TraesCS5A01G432000 chr6A 58176339 58177518 1179 True 582.000000 691 84.600500 2903 4260 2 chr6A.!!$R3 1357
7 TraesCS5A01G432000 chr6A 58185116 58185773 657 True 484.000000 484 80.876000 2259 2911 1 chr6A.!!$R1 652
8 TraesCS5A01G432000 chr6B 550598896 550600040 1144 False 598.000000 721 85.564500 2932 4255 2 chr6B.!!$F2 1323
9 TraesCS5A01G432000 chr6B 4416544 4417684 1140 True 589.500000 737 85.319000 2932 4255 2 chr6B.!!$R1 1323
10 TraesCS5A01G432000 chr2A 423190382 423191533 1151 False 562.000000 688 84.485500 2932 4255 2 chr2A.!!$F1 1323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.179073 AAAGGAGCGATCCATGGACG 60.179 55.0 23.83 22.16 0.00 4.79 F
1192 1330 0.179070 GATCAGGAACGGAAGCCCTC 60.179 60.0 0.00 0.00 35.38 4.30 F
1727 1919 0.179029 CGAGAGGAGGGGAGAGAGTC 60.179 65.0 0.00 0.00 0.00 3.36 F
1728 1920 0.179029 GAGAGGAGGGGAGAGAGTCG 60.179 65.0 0.00 0.00 0.00 4.18 F
3067 3351 0.038599 TGCCTACTACAGACCGGTCA 59.961 55.0 35.00 15.04 0.00 4.02 F
3068 3352 0.455005 GCCTACTACAGACCGGTCAC 59.545 60.0 35.00 11.62 0.00 3.67 F
4137 4442 1.063806 GTGCTCAGCAGTTGTACTCG 58.936 55.0 0.00 0.00 40.08 4.18 F
5894 6239 0.532862 ACAACTCAACCGGCTGTCAG 60.533 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 1389 0.102120 CAACAAACAGCCAGCGGAAA 59.898 50.000 0.00 0.0 0.00 3.13 R
3048 3332 0.038599 TGACCGGTCTGTAGTAGGCA 59.961 55.000 33.39 8.7 30.64 4.75 R
3068 3352 0.443869 CGGTCAACATTCCGCTTCAG 59.556 55.000 0.00 0.0 40.28 3.02 R
3616 3907 0.888619 GCCCAGGGTTCTTGTTTAGC 59.111 55.000 7.55 0.0 0.00 3.09 R
4876 5201 1.079888 CCAAGCATGGCCCGAAAAC 60.080 57.895 0.00 0.0 40.58 2.43 R
4961 5287 1.770749 ATCCCGGGAAAACACGTCCA 61.771 55.000 30.84 0.0 36.83 4.02 R
5899 6244 0.112412 TCTCCTCCAAACAAAGGGGC 59.888 55.000 0.00 0.0 32.77 5.80 R
7010 7460 0.179034 AGGGATCGCTCAAAGCATCC 60.179 55.000 6.44 15.9 42.58 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.784547 TGCAAAGGAGCGATCCATG 58.215 52.632 23.83 20.48 37.31 3.66
19 20 0.749091 TGCAAAGGAGCGATCCATGG 60.749 55.000 23.83 9.05 37.31 3.66
20 21 0.464373 GCAAAGGAGCGATCCATGGA 60.464 55.000 23.83 18.88 0.00 3.41
21 22 1.303309 CAAAGGAGCGATCCATGGAC 58.697 55.000 23.83 10.34 0.00 4.02
22 23 0.179073 AAAGGAGCGATCCATGGACG 60.179 55.000 23.83 22.16 0.00 4.79
26 27 2.281070 GCGATCCATGGACGCCAT 60.281 61.111 33.20 15.61 46.37 4.40
33 34 2.755469 ATGGACGCCATGCCCAAC 60.755 61.111 10.09 0.00 43.39 3.77
36 37 3.799755 GACGCCATGCCCAACGTC 61.800 66.667 0.00 0.00 46.64 4.34
39 40 2.988684 GCCATGCCCAACGTCCAA 60.989 61.111 0.00 0.00 0.00 3.53
40 41 2.961768 CCATGCCCAACGTCCAAC 59.038 61.111 0.00 0.00 0.00 3.77
41 42 1.603455 CCATGCCCAACGTCCAACT 60.603 57.895 0.00 0.00 0.00 3.16
42 43 1.586154 CCATGCCCAACGTCCAACTC 61.586 60.000 0.00 0.00 0.00 3.01
43 44 1.303317 ATGCCCAACGTCCAACTCC 60.303 57.895 0.00 0.00 0.00 3.85
44 45 2.063015 ATGCCCAACGTCCAACTCCA 62.063 55.000 0.00 0.00 0.00 3.86
45 46 1.527380 GCCCAACGTCCAACTCCAA 60.527 57.895 0.00 0.00 0.00 3.53
46 47 1.515521 GCCCAACGTCCAACTCCAAG 61.516 60.000 0.00 0.00 0.00 3.61
47 48 1.515521 CCCAACGTCCAACTCCAAGC 61.516 60.000 0.00 0.00 0.00 4.01
48 49 0.535102 CCAACGTCCAACTCCAAGCT 60.535 55.000 0.00 0.00 0.00 3.74
49 50 1.308998 CAACGTCCAACTCCAAGCTT 58.691 50.000 0.00 0.00 0.00 3.74
50 51 1.002468 CAACGTCCAACTCCAAGCTTG 60.002 52.381 19.93 19.93 0.00 4.01
51 52 1.166531 ACGTCCAACTCCAAGCTTGC 61.167 55.000 21.43 3.71 0.00 4.01
52 53 0.886490 CGTCCAACTCCAAGCTTGCT 60.886 55.000 21.43 2.27 0.00 3.91
53 54 1.608025 CGTCCAACTCCAAGCTTGCTA 60.608 52.381 21.43 10.04 0.00 3.49
54 55 1.807142 GTCCAACTCCAAGCTTGCTAC 59.193 52.381 21.43 6.60 0.00 3.58
55 56 0.798776 CCAACTCCAAGCTTGCTACG 59.201 55.000 21.43 7.51 0.00 3.51
56 57 1.608025 CCAACTCCAAGCTTGCTACGA 60.608 52.381 21.43 11.54 0.00 3.43
57 58 2.143122 CAACTCCAAGCTTGCTACGAA 58.857 47.619 21.43 0.89 0.00 3.85
58 59 2.086054 ACTCCAAGCTTGCTACGAAG 57.914 50.000 21.43 12.01 0.00 3.79
75 76 2.097160 GCGCGTGCTGATTCTGTG 59.903 61.111 15.02 0.00 38.39 3.66
81 82 1.446907 GTGCTGATTCTGTGGGAGTG 58.553 55.000 0.00 0.00 0.00 3.51
90 91 3.263369 TCTGTGGGAGTGGTACCTTTA 57.737 47.619 14.36 0.00 0.00 1.85
100 101 5.336690 GGAGTGGTACCTTTATTCGTGTGTA 60.337 44.000 14.36 0.00 0.00 2.90
101 102 5.717119 AGTGGTACCTTTATTCGTGTGTAG 58.283 41.667 14.36 0.00 0.00 2.74
106 107 6.531594 GGTACCTTTATTCGTGTGTAGTAACC 59.468 42.308 4.06 0.00 0.00 2.85
137 138 2.031012 TCAAGCCCGCTGTGTGAG 59.969 61.111 0.00 0.00 0.00 3.51
148 149 3.414700 GTGTGAGCAGTTCCGGCG 61.415 66.667 0.00 0.00 36.08 6.46
236 237 1.702886 CCACTGTACGTCTCTTGCTG 58.297 55.000 0.00 0.00 0.00 4.41
246 247 2.260481 GTCTCTTGCTGCCGTTACTAC 58.740 52.381 0.00 0.00 0.00 2.73
247 248 2.094649 GTCTCTTGCTGCCGTTACTACT 60.095 50.000 0.00 0.00 0.00 2.57
248 249 3.128242 GTCTCTTGCTGCCGTTACTACTA 59.872 47.826 0.00 0.00 0.00 1.82
249 250 3.128242 TCTCTTGCTGCCGTTACTACTAC 59.872 47.826 0.00 0.00 0.00 2.73
250 251 3.087031 TCTTGCTGCCGTTACTACTACT 58.913 45.455 0.00 0.00 0.00 2.57
259 260 6.409704 TGCCGTTACTACTACTAGAAGAAGA 58.590 40.000 0.00 0.00 0.00 2.87
268 269 8.895737 ACTACTACTAGAAGAAGAAGGAAATCG 58.104 37.037 0.00 0.00 0.00 3.34
276 277 1.997669 AGAAGGAAATCGACGACAGC 58.002 50.000 0.00 0.00 0.00 4.40
309 311 0.323629 TTTCAGGGTCGCGAGGAAAT 59.676 50.000 10.24 0.00 0.00 2.17
400 402 0.605589 GAGGAGCCGATGGACCTATG 59.394 60.000 0.00 0.00 33.01 2.23
401 403 1.004440 GGAGCCGATGGACCTATGC 60.004 63.158 0.00 0.00 0.00 3.14
407 409 0.465705 CGATGGACCTATGCCAGTGT 59.534 55.000 0.00 0.00 39.11 3.55
408 410 1.134401 CGATGGACCTATGCCAGTGTT 60.134 52.381 0.00 0.00 39.11 3.32
409 411 2.292267 GATGGACCTATGCCAGTGTTG 58.708 52.381 0.00 0.00 39.11 3.33
410 412 1.357137 TGGACCTATGCCAGTGTTGA 58.643 50.000 0.00 0.00 0.00 3.18
412 414 2.092968 TGGACCTATGCCAGTGTTGATC 60.093 50.000 0.00 0.00 0.00 2.92
413 415 2.205074 GACCTATGCCAGTGTTGATCG 58.795 52.381 0.00 0.00 0.00 3.69
414 416 1.831106 ACCTATGCCAGTGTTGATCGA 59.169 47.619 0.00 0.00 0.00 3.59
415 417 2.435805 ACCTATGCCAGTGTTGATCGAT 59.564 45.455 0.00 0.00 0.00 3.59
416 418 3.062763 CCTATGCCAGTGTTGATCGATC 58.937 50.000 18.72 18.72 0.00 3.69
417 419 1.575244 ATGCCAGTGTTGATCGATCG 58.425 50.000 20.03 9.36 0.00 3.69
418 420 0.460109 TGCCAGTGTTGATCGATCGG 60.460 55.000 20.03 14.41 0.00 4.18
419 421 0.460284 GCCAGTGTTGATCGATCGGT 60.460 55.000 20.03 8.34 0.00 4.69
420 422 1.560923 CCAGTGTTGATCGATCGGTC 58.439 55.000 21.50 21.50 0.00 4.79
523 564 1.228510 GCATCCAAGGGAGGAAGGG 59.771 63.158 0.40 0.00 41.92 3.95
524 565 1.925888 CATCCAAGGGAGGAAGGGG 59.074 63.158 0.00 0.00 41.92 4.79
540 581 2.391389 GGGAAAGCGTGCGAGAAGG 61.391 63.158 0.00 0.00 0.00 3.46
541 582 2.391389 GGAAAGCGTGCGAGAAGGG 61.391 63.158 0.00 0.00 0.00 3.95
573 614 1.356527 CGAGGAGTAAAAACGCCGGG 61.357 60.000 2.18 0.00 34.65 5.73
652 696 1.739049 CATCGGGAGAGGAGACAGC 59.261 63.158 0.00 0.00 44.82 4.40
793 883 4.430423 GCACGAAACGGCGCTCAG 62.430 66.667 6.90 1.39 33.86 3.35
807 903 2.726066 GCGCTCAGGAAATCTCGTTTTG 60.726 50.000 0.00 0.00 0.00 2.44
814 910 3.826729 AGGAAATCTCGTTTTGGGAAAGG 59.173 43.478 0.00 0.00 33.16 3.11
898 1013 4.950475 CCCAGTTATTTCCTTCCCTTTCTC 59.050 45.833 0.00 0.00 0.00 2.87
902 1017 5.316183 AGTTATTTCCTTCCCTTTCTCCCTT 59.684 40.000 0.00 0.00 0.00 3.95
903 1018 4.767000 ATTTCCTTCCCTTTCTCCCTTT 57.233 40.909 0.00 0.00 0.00 3.11
904 1019 3.808834 TTCCTTCCCTTTCTCCCTTTC 57.191 47.619 0.00 0.00 0.00 2.62
905 1020 1.993301 TCCTTCCCTTTCTCCCTTTCC 59.007 52.381 0.00 0.00 0.00 3.13
906 1021 1.006043 CCTTCCCTTTCTCCCTTTCCC 59.994 57.143 0.00 0.00 0.00 3.97
907 1022 1.006043 CTTCCCTTTCTCCCTTTCCCC 59.994 57.143 0.00 0.00 0.00 4.81
908 1023 0.849540 TCCCTTTCTCCCTTTCCCCC 60.850 60.000 0.00 0.00 0.00 5.40
909 1024 0.851332 CCCTTTCTCCCTTTCCCCCT 60.851 60.000 0.00 0.00 0.00 4.79
910 1025 0.626382 CCTTTCTCCCTTTCCCCCTC 59.374 60.000 0.00 0.00 0.00 4.30
911 1026 0.626382 CTTTCTCCCTTTCCCCCTCC 59.374 60.000 0.00 0.00 0.00 4.30
912 1027 0.198696 TTTCTCCCTTTCCCCCTCCT 59.801 55.000 0.00 0.00 0.00 3.69
913 1028 0.253207 TTCTCCCTTTCCCCCTCCTC 60.253 60.000 0.00 0.00 0.00 3.71
914 1029 1.694525 CTCCCTTTCCCCCTCCTCC 60.695 68.421 0.00 0.00 0.00 4.30
915 1030 2.191846 TCCCTTTCCCCCTCCTCCT 61.192 63.158 0.00 0.00 0.00 3.69
929 1044 0.185901 CCTCCTCCTCCTCTCCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
957 1072 1.958205 GCCGTGCATGCCTAGCTAG 60.958 63.158 16.68 14.20 0.00 3.42
958 1073 1.301244 CCGTGCATGCCTAGCTAGG 60.301 63.158 32.12 32.12 46.42 3.02
1019 1144 3.564027 GGACGGCTCGGATTTGCG 61.564 66.667 0.00 0.00 0.00 4.85
1084 1218 2.394604 GCCAGTCGCCATTAGAACC 58.605 57.895 0.00 0.00 0.00 3.62
1109 1245 3.434984 CACTAAACAAAGCAGAGAGAGGC 59.565 47.826 0.00 0.00 0.00 4.70
1135 1271 1.129058 GCGAGGATAAAAGGGAGGGA 58.871 55.000 0.00 0.00 0.00 4.20
1183 1321 0.946221 GGCATAGCGGATCAGGAACG 60.946 60.000 0.00 0.00 0.00 3.95
1184 1322 0.946221 GCATAGCGGATCAGGAACGG 60.946 60.000 0.00 0.00 0.00 4.44
1185 1323 0.673985 CATAGCGGATCAGGAACGGA 59.326 55.000 0.00 0.00 36.71 4.69
1186 1324 1.068588 CATAGCGGATCAGGAACGGAA 59.931 52.381 0.00 0.00 35.38 4.30
1187 1325 0.744874 TAGCGGATCAGGAACGGAAG 59.255 55.000 0.00 0.00 35.38 3.46
1188 1326 2.174319 GCGGATCAGGAACGGAAGC 61.174 63.158 0.00 0.00 35.38 3.86
1189 1327 1.521681 CGGATCAGGAACGGAAGCC 60.522 63.158 0.00 0.00 35.38 4.35
1190 1328 1.153147 GGATCAGGAACGGAAGCCC 60.153 63.158 0.00 0.00 35.38 5.19
1191 1329 1.627297 GGATCAGGAACGGAAGCCCT 61.627 60.000 0.00 0.00 35.38 5.19
1192 1330 0.179070 GATCAGGAACGGAAGCCCTC 60.179 60.000 0.00 0.00 35.38 4.30
1193 1331 1.961180 ATCAGGAACGGAAGCCCTCG 61.961 60.000 0.00 0.00 35.38 4.63
1194 1332 4.083862 AGGAACGGAAGCCCTCGC 62.084 66.667 0.00 0.00 32.89 5.03
1220 1370 2.867472 CAACCGGACACGCCATTC 59.133 61.111 9.46 0.00 39.22 2.67
1235 1385 3.181516 CGCCATTCTCTTTCTTTTCCTCG 60.182 47.826 0.00 0.00 0.00 4.63
1239 1389 3.771577 TCTCTTTCTTTTCCTCGGCTT 57.228 42.857 0.00 0.00 0.00 4.35
1241 1391 4.461198 TCTCTTTCTTTTCCTCGGCTTTT 58.539 39.130 0.00 0.00 0.00 2.27
1243 1393 3.568430 TCTTTCTTTTCCTCGGCTTTTCC 59.432 43.478 0.00 0.00 0.00 3.13
1253 1417 2.564721 GGCTTTTCCGCTGGCTGTT 61.565 57.895 0.00 0.00 0.00 3.16
1307 1471 1.157257 CGCCGCATACATACAAGCCA 61.157 55.000 0.00 0.00 0.00 4.75
1308 1472 0.588252 GCCGCATACATACAAGCCAG 59.412 55.000 0.00 0.00 0.00 4.85
1309 1473 0.588252 CCGCATACATACAAGCCAGC 59.412 55.000 0.00 0.00 0.00 4.85
1310 1474 0.588252 CGCATACATACAAGCCAGCC 59.412 55.000 0.00 0.00 0.00 4.85
1376 1544 2.841442 ACCAGTAGCCTTCACTTCAC 57.159 50.000 0.00 0.00 0.00 3.18
1433 1601 2.993539 GGATACCCGAGCAAGCTTC 58.006 57.895 0.00 0.00 0.00 3.86
1434 1602 0.466124 GGATACCCGAGCAAGCTTCT 59.534 55.000 0.00 0.00 0.00 2.85
1445 1613 3.302347 AAGCTTCTCCCTCGCCGTG 62.302 63.158 0.00 0.00 0.00 4.94
1474 1644 1.377202 GCATTGCTCCCTCGGTTCA 60.377 57.895 0.16 0.00 0.00 3.18
1479 1649 1.446272 GCTCCCTCGGTTCAGTTCG 60.446 63.158 0.00 0.00 0.00 3.95
1598 1789 2.666098 CGGTCCGAGATTTGGGGGT 61.666 63.158 4.91 0.00 0.00 4.95
1642 1834 3.967715 GTGGAACGGAGAGGCAAC 58.032 61.111 0.00 0.00 0.00 4.17
1671 1863 3.693578 CCAGATTTGAGGAGCTTTCCTTC 59.306 47.826 0.00 0.00 40.86 3.46
1702 1894 0.552848 CACCTTCCATACCAGGCCAT 59.447 55.000 5.01 0.00 32.79 4.40
1704 1896 1.774856 ACCTTCCATACCAGGCCATAC 59.225 52.381 5.01 0.00 32.79 2.39
1708 1900 2.047061 TCCATACCAGGCCATACAGAC 58.953 52.381 5.01 0.00 0.00 3.51
1726 1918 0.917333 ACGAGAGGAGGGGAGAGAGT 60.917 60.000 0.00 0.00 0.00 3.24
1727 1919 0.179029 CGAGAGGAGGGGAGAGAGTC 60.179 65.000 0.00 0.00 0.00 3.36
1728 1920 0.179029 GAGAGGAGGGGAGAGAGTCG 60.179 65.000 0.00 0.00 0.00 4.18
1729 1921 1.152839 GAGGAGGGGAGAGAGTCGG 60.153 68.421 0.00 0.00 0.00 4.79
1730 1922 2.835895 GGAGGGGAGAGAGTCGGC 60.836 72.222 0.00 0.00 0.00 5.54
1750 1942 4.373116 GGAGGCGGCGTCAGTCAA 62.373 66.667 22.42 0.00 0.00 3.18
1767 1959 1.591158 TCAAGCGCGGATAAATTCGAC 59.409 47.619 8.83 0.00 0.00 4.20
1846 2040 6.876257 AGATTAACAAGAAGAGCAAGGTACTG 59.124 38.462 0.00 0.00 40.86 2.74
1847 2041 2.772287 ACAAGAAGAGCAAGGTACTGC 58.228 47.619 0.00 0.00 40.86 4.40
1848 2042 1.728971 CAAGAAGAGCAAGGTACTGCG 59.271 52.381 1.81 0.00 40.86 5.18
1849 2043 1.257743 AGAAGAGCAAGGTACTGCGA 58.742 50.000 1.81 0.00 40.86 5.10
1851 2045 1.202582 GAAGAGCAAGGTACTGCGAGA 59.797 52.381 1.81 0.00 40.86 4.04
1852 2046 0.814457 AGAGCAAGGTACTGCGAGAG 59.186 55.000 1.81 0.00 40.86 3.20
1864 2058 2.413765 CGAGAGCCGCCCTACTTC 59.586 66.667 0.00 0.00 0.00 3.01
1880 2074 5.068987 CCCTACTTCTCTTCCTCAATCTCTG 59.931 48.000 0.00 0.00 0.00 3.35
2077 2278 4.082125 AGGATTTGGGTCAAACATCAGAC 58.918 43.478 0.00 0.00 36.13 3.51
2106 2307 4.081198 AGGATTCTGCTTTTCTCTCACGAT 60.081 41.667 0.00 0.00 0.00 3.73
2132 2333 4.696455 AGCCTTTTGGATTTCAAGTTGTG 58.304 39.130 2.11 0.00 44.07 3.33
2157 2358 9.162764 TGGTACTTCTAGCAAAGATTAATCAAC 57.837 33.333 17.56 3.94 33.05 3.18
2187 2388 2.716017 GCTCTAGACACCCGCTGCT 61.716 63.158 0.00 0.00 0.00 4.24
2225 2426 3.282745 TTCCGTCGAGCTGCTGGTC 62.283 63.158 7.01 12.31 37.35 4.02
2255 2456 1.234615 GCTTGCTGTGCGGTTTAGGA 61.235 55.000 0.00 0.00 0.00 2.94
2257 2458 0.948678 TTGCTGTGCGGTTTAGGAAC 59.051 50.000 0.00 0.00 34.96 3.62
2281 2482 1.336795 GGTTCCCCTTTGTTGAATGCG 60.337 52.381 0.00 0.00 0.00 4.73
2294 2501 1.811965 TGAATGCGGTTTCAGTCATGG 59.188 47.619 0.00 0.00 36.33 3.66
2309 2516 3.877450 TGGCCTCCCCATCATCGC 61.877 66.667 3.32 0.00 39.18 4.58
2310 2517 3.564218 GGCCTCCCCATCATCGCT 61.564 66.667 0.00 0.00 0.00 4.93
2314 2524 3.873026 CTCCCCATCATCGCTCCGC 62.873 68.421 0.00 0.00 0.00 5.54
2327 2537 1.798087 CTCCGCGCCCGTAATTTTT 59.202 52.632 0.00 0.00 0.00 1.94
2328 2538 0.247934 CTCCGCGCCCGTAATTTTTC 60.248 55.000 0.00 0.00 0.00 2.29
2415 2625 2.298661 GGTCCCCATCGAACAGGGT 61.299 63.158 16.81 0.00 43.89 4.34
2529 2756 1.903404 AACGCCTTTCCCCAAGCAG 60.903 57.895 0.00 0.00 0.00 4.24
2593 2824 2.291465 TGCTTCTCATGTCAACAACAGC 59.709 45.455 0.00 0.00 42.37 4.40
2599 2839 5.522456 TCTCATGTCAACAACAGCATTTTC 58.478 37.500 0.00 0.00 42.37 2.29
2613 2853 2.727916 GCATTTTCTTTACCGCGGTCAG 60.728 50.000 38.01 30.16 0.00 3.51
2694 2935 9.558396 ACAGATTTATTTTCCTTTGCATTTTCA 57.442 25.926 0.00 0.00 0.00 2.69
2715 2956 0.545309 TGCCTCTGCTTGGTCTAGGT 60.545 55.000 0.00 0.00 38.71 3.08
3048 3332 6.591935 TCTCTGTTTCTGTTGTTCCTTATGT 58.408 36.000 0.00 0.00 0.00 2.29
3056 3340 5.482526 TCTGTTGTTCCTTATGTGCCTACTA 59.517 40.000 0.00 0.00 0.00 1.82
3067 3351 0.038599 TGCCTACTACAGACCGGTCA 59.961 55.000 35.00 15.04 0.00 4.02
3068 3352 0.455005 GCCTACTACAGACCGGTCAC 59.545 60.000 35.00 11.62 0.00 3.67
3082 3366 1.523758 GGTCACTGAAGCGGAATGTT 58.476 50.000 0.00 0.00 0.00 2.71
3085 3369 2.096218 GTCACTGAAGCGGAATGTTGAC 60.096 50.000 0.00 0.00 0.00 3.18
3093 3377 1.289109 CGGAATGTTGACCGCGTTCT 61.289 55.000 4.96 0.00 42.55 3.01
3103 3387 2.490509 TGACCGCGTTCTTAGATCAAGA 59.509 45.455 4.96 0.00 41.66 3.02
3157 3441 5.045578 AGCTCAAGATTACAGGTACCACATT 60.046 40.000 15.94 0.00 0.00 2.71
3158 3442 5.648092 GCTCAAGATTACAGGTACCACATTT 59.352 40.000 15.94 0.00 0.00 2.32
3165 3449 6.870971 TTACAGGTACCACATTTTTCACTC 57.129 37.500 15.94 0.00 0.00 3.51
3201 3485 5.690865 TGCCTTGTAGTAATAGGGATTTGG 58.309 41.667 0.00 0.00 0.00 3.28
3291 3575 4.715896 CGCATTCTGGTGTATCATTATGC 58.284 43.478 0.00 0.00 33.67 3.14
3299 3583 4.141413 TGGTGTATCATTATGCTGCTTCCT 60.141 41.667 0.00 0.00 0.00 3.36
3505 3795 6.407202 TCTTGAGCTTGTCCTTTAACTATCC 58.593 40.000 0.00 0.00 0.00 2.59
3616 3907 4.831155 TGGGTATCACTTATTAGGAGGACG 59.169 45.833 0.00 0.00 0.00 4.79
3815 4106 6.375455 AGGAAATGATATGTTCTCACAACCAC 59.625 38.462 0.00 0.00 36.16 4.16
3925 4216 6.053632 TCACCAGGCGATGAATATATTGAT 57.946 37.500 1.78 0.00 0.00 2.57
4031 4322 9.101325 AGCAGCCAAATACTTCTAGGTATTATA 57.899 33.333 5.22 0.00 40.27 0.98
4078 4369 8.718102 TTTACATATGCTTGTTCCTCTAAGTC 57.282 34.615 1.58 0.00 0.00 3.01
4083 4374 2.303311 GCTTGTTCCTCTAAGTCACCCT 59.697 50.000 0.00 0.00 0.00 4.34
4084 4375 3.617775 GCTTGTTCCTCTAAGTCACCCTC 60.618 52.174 0.00 0.00 0.00 4.30
4137 4442 1.063806 GTGCTCAGCAGTTGTACTCG 58.936 55.000 0.00 0.00 40.08 4.18
4272 4596 4.453136 TGGGTACGCAGTGAAATAAGAAAC 59.547 41.667 8.80 0.00 45.73 2.78
4278 4602 7.997107 ACGCAGTGAAATAAGAAACGATATA 57.003 32.000 0.00 0.00 42.51 0.86
4343 4668 9.416284 GGGTTATCTTGGAAATAAGGTAAATGA 57.584 33.333 0.00 0.00 35.62 2.57
4478 4803 8.317679 AGGGTTCTATATCAATAAGCATGTCTC 58.682 37.037 0.00 0.00 0.00 3.36
4484 4809 7.997773 ATATCAATAAGCATGTCTCTGCATT 57.002 32.000 0.00 0.00 44.77 3.56
4537 4862 1.575447 CCTCTGGGGAAAAGGAGGGG 61.575 65.000 0.00 0.00 40.98 4.79
4579 4904 7.666063 TTCTGATGTCATGGAGATCTTAAGA 57.334 36.000 7.82 7.82 34.11 2.10
4664 4989 7.463544 TGAGCATGAGTATGTATTTGTTTTCG 58.536 34.615 0.00 0.00 36.65 3.46
4672 4997 9.144085 GAGTATGTATTTGTTTTCGCTTATTCG 57.856 33.333 0.00 0.00 0.00 3.34
4703 5028 3.631250 TGTGGAAGCCAGAGAAAACTTT 58.369 40.909 0.00 0.00 32.34 2.66
4707 5032 4.466015 TGGAAGCCAGAGAAAACTTTTTGT 59.534 37.500 0.00 0.00 0.00 2.83
4756 5081 3.997021 CCGTATCTTATGGCTTGGTGATC 59.003 47.826 0.00 0.00 0.00 2.92
4852 5177 7.400339 TGTTGGAGAGAGATCAGGTAATTTACT 59.600 37.037 6.52 0.00 0.00 2.24
4856 5181 9.528489 GGAGAGAGATCAGGTAATTTACTCTAT 57.472 37.037 6.52 0.00 34.17 1.98
4860 5185 9.890915 AGAGATCAGGTAATTTACTCTATTCCT 57.109 33.333 6.52 0.00 32.61 3.36
4869 5194 9.807649 GTAATTTACTCTATTCCTTTACACGGA 57.192 33.333 0.00 0.00 0.00 4.69
4872 5197 9.901172 ATTTACTCTATTCCTTTACACGGAAAT 57.099 29.630 0.00 0.00 43.26 2.17
4876 5201 7.119262 ACTCTATTCCTTTACACGGAAATGTTG 59.881 37.037 0.00 0.00 43.26 3.33
4877 5202 6.938030 TCTATTCCTTTACACGGAAATGTTGT 59.062 34.615 0.00 0.00 43.26 3.32
4910 5236 2.036346 GCTTGGCAAGGTTCATTTCAGT 59.964 45.455 27.25 0.00 0.00 3.41
4931 5257 4.397417 AGTGCCATGCTTGAATTACTTCTC 59.603 41.667 0.22 0.00 32.29 2.87
4994 5320 1.559682 CCGGGATGGAAAGAAGGAAGA 59.440 52.381 0.00 0.00 42.00 2.87
5260 5587 2.500509 GAGAATCACGCTTCTCCGAT 57.499 50.000 10.38 0.00 43.49 4.18
5324 5651 1.978580 TCCACCAGAGGAGAAGAAACC 59.021 52.381 0.00 0.00 32.77 3.27
5435 5762 7.222999 GGCGATTCCATGCTATAAGTAAGTATC 59.777 40.741 0.00 0.00 34.01 2.24
5438 5765 6.584185 TCCATGCTATAAGTAAGTATCGCA 57.416 37.500 0.00 0.00 36.81 5.10
5571 5907 2.614057 CCTCACCGATGAATAACTTGGC 59.386 50.000 0.00 0.00 33.30 4.52
5573 5909 3.531538 TCACCGATGAATAACTTGGCTC 58.468 45.455 0.00 0.00 0.00 4.70
5605 5941 5.587443 TGTTGGATGATCAGATGTGAATGTC 59.413 40.000 0.09 0.00 35.88 3.06
5623 5959 8.469200 GTGAATGTCCAATATTTTTCCATCTGA 58.531 33.333 0.00 0.00 0.00 3.27
5625 5961 9.472361 GAATGTCCAATATTTTTCCATCTGATG 57.528 33.333 10.71 10.71 0.00 3.07
5628 5964 8.814931 TGTCCAATATTTTTCCATCTGATGTTT 58.185 29.630 15.95 0.00 0.00 2.83
5649 5985 5.625921 TTGTAACATTTTAGTAACCGCCC 57.374 39.130 0.00 0.00 0.00 6.13
5667 6003 2.485657 GCCCAGATGTAAAGCCTAGGAC 60.486 54.545 14.75 3.76 0.00 3.85
5678 6014 1.676678 GCCTAGGACAGATGCGTGGA 61.677 60.000 14.75 0.00 0.00 4.02
5718 6055 7.698506 AAAGCTAACATAGAGGTAAAAACCC 57.301 36.000 0.00 0.00 0.00 4.11
5726 6063 7.173032 ACATAGAGGTAAAAACCCGATTTCTT 58.827 34.615 0.00 0.00 0.00 2.52
5727 6064 7.668469 ACATAGAGGTAAAAACCCGATTTCTTT 59.332 33.333 0.00 0.00 0.00 2.52
5728 6065 9.169592 CATAGAGGTAAAAACCCGATTTCTTTA 57.830 33.333 0.00 0.00 0.00 1.85
5731 6068 5.477984 AGGTAAAAACCCGATTTCTTTACCC 59.522 40.000 15.13 2.56 41.07 3.69
5733 6070 2.865119 AACCCGATTTCTTTACCCGT 57.135 45.000 0.00 0.00 0.00 5.28
5741 6078 4.630069 CGATTTCTTTACCCGTGAGTGAAT 59.370 41.667 0.00 0.00 0.00 2.57
5742 6079 5.121768 CGATTTCTTTACCCGTGAGTGAATT 59.878 40.000 0.00 0.00 0.00 2.17
5744 6081 4.884668 TCTTTACCCGTGAGTGAATTCT 57.115 40.909 7.05 0.00 0.00 2.40
5886 6231 5.055642 TCACTGACTATACAACTCAACCG 57.944 43.478 0.00 0.00 0.00 4.44
5890 6235 3.187700 GACTATACAACTCAACCGGCTG 58.812 50.000 0.00 0.00 0.00 4.85
5893 6238 0.753867 TACAACTCAACCGGCTGTCA 59.246 50.000 0.00 0.00 0.00 3.58
5894 6239 0.532862 ACAACTCAACCGGCTGTCAG 60.533 55.000 0.00 0.00 0.00 3.51
5895 6240 0.532862 CAACTCAACCGGCTGTCAGT 60.533 55.000 0.00 0.00 0.00 3.41
5896 6241 0.532862 AACTCAACCGGCTGTCAGTG 60.533 55.000 0.00 0.00 0.00 3.66
5899 6244 2.029073 AACCGGCTGTCAGTGTCG 59.971 61.111 0.00 3.87 0.00 4.35
5942 6297 1.660167 TCAGCAAGCTCCAATCATCG 58.340 50.000 0.00 0.00 0.00 3.84
6089 6457 3.442273 TGGATTGGACCAACGAAATTAGC 59.558 43.478 9.67 0.00 36.96 3.09
6117 6487 8.647226 GTTAGTTTTTCCGGATGATGATTTTTG 58.353 33.333 4.15 0.00 0.00 2.44
6193 6563 3.633525 TGTCATCATATGCTTGCCTTTCC 59.366 43.478 0.00 0.00 0.00 3.13
6253 6628 3.058016 GCTTCACTCATTGCTTGTTGCTA 60.058 43.478 0.00 0.00 43.37 3.49
6258 6633 2.658373 CATTGCTTGTTGCTATGCCA 57.342 45.000 0.00 0.00 44.83 4.92
6259 6634 3.173668 CATTGCTTGTTGCTATGCCAT 57.826 42.857 0.00 0.00 44.83 4.40
6260 6635 2.658373 TTGCTTGTTGCTATGCCATG 57.342 45.000 0.00 0.00 43.37 3.66
6261 6636 1.836802 TGCTTGTTGCTATGCCATGA 58.163 45.000 0.00 0.00 43.37 3.07
6264 6639 3.196039 TGCTTGTTGCTATGCCATGAAAT 59.804 39.130 0.00 0.00 43.37 2.17
6265 6640 3.554324 GCTTGTTGCTATGCCATGAAATG 59.446 43.478 0.00 0.00 40.76 2.32
6280 6655 1.202348 GAAATGGGAAAGTGAAGCCCG 59.798 52.381 0.00 0.00 45.08 6.13
6320 6695 2.910544 TCCTTGGTTAGAGGCCTGTTA 58.089 47.619 12.00 0.00 34.17 2.41
6358 6733 0.038599 TGCAGTGCCTCATCATGGTT 59.961 50.000 13.72 0.00 0.00 3.67
6359 6734 1.281577 TGCAGTGCCTCATCATGGTTA 59.718 47.619 13.72 0.00 0.00 2.85
6361 6736 3.136260 TGCAGTGCCTCATCATGGTTATA 59.864 43.478 13.72 0.00 0.00 0.98
6363 6738 4.067896 CAGTGCCTCATCATGGTTATACC 58.932 47.826 0.00 0.00 39.22 2.73
6365 6740 5.012046 CAGTGCCTCATCATGGTTATACCTA 59.988 44.000 0.00 0.00 39.58 3.08
6366 6741 5.606749 AGTGCCTCATCATGGTTATACCTAA 59.393 40.000 0.00 0.00 39.58 2.69
6367 6742 5.934625 GTGCCTCATCATGGTTATACCTAAG 59.065 44.000 0.00 0.00 39.58 2.18
6369 6744 6.166982 GCCTCATCATGGTTATACCTAAGTC 58.833 44.000 0.00 0.00 39.58 3.01
6370 6745 6.390721 CCTCATCATGGTTATACCTAAGTCG 58.609 44.000 0.00 0.00 39.58 4.18
6371 6746 5.779922 TCATCATGGTTATACCTAAGTCGC 58.220 41.667 0.00 0.00 39.58 5.19
6372 6747 4.595762 TCATGGTTATACCTAAGTCGCC 57.404 45.455 0.00 0.00 39.58 5.54
6373 6748 3.322828 TCATGGTTATACCTAAGTCGCCC 59.677 47.826 0.00 0.00 39.58 6.13
6374 6749 1.682854 TGGTTATACCTAAGTCGCCCG 59.317 52.381 0.00 0.00 39.58 6.13
6375 6750 1.956477 GGTTATACCTAAGTCGCCCGA 59.044 52.381 0.00 0.00 34.73 5.14
6417 6836 0.586802 GATTAAGATCCAACGGCGGC 59.413 55.000 13.24 0.00 0.00 6.53
6447 6866 0.613777 TCTTCCTCCGGCTTTCTTCC 59.386 55.000 0.00 0.00 0.00 3.46
6502 6921 8.617809 TCGACTAACCCAAATTATAAATTCAGC 58.382 33.333 0.00 0.00 0.00 4.26
6523 6942 4.672409 GCCAACTTTCACATAACTATGGC 58.328 43.478 0.00 0.00 43.31 4.40
6586 7008 2.614057 GGGTAAATCAAGTGGAGCATCG 59.386 50.000 0.00 0.00 34.37 3.84
6587 7009 2.614057 GGTAAATCAAGTGGAGCATCGG 59.386 50.000 0.00 0.00 34.37 4.18
6604 7029 4.865365 GCATCGGGATAGTATTAGCTGAAC 59.135 45.833 0.00 0.00 0.00 3.18
6633 7058 4.394610 GGAGCATCTCCTGAGTTCTTTTTC 59.605 45.833 5.65 0.00 46.41 2.29
6634 7059 4.331108 AGCATCTCCTGAGTTCTTTTTCC 58.669 43.478 0.00 0.00 0.00 3.13
6655 7080 0.464193 TGTTGCTTGCTCTGCAGTCA 60.464 50.000 14.67 10.34 40.61 3.41
6658 7083 0.464193 TGCTTGCTCTGCAGTCAACA 60.464 50.000 14.67 14.94 40.61 3.33
6670 7096 3.253188 TGCAGTCAACATTCTTTGGCTAC 59.747 43.478 0.00 0.00 39.46 3.58
6704 7130 1.871676 GAACAAGGTTTGACTCGACCC 59.128 52.381 0.00 0.00 36.57 4.46
6750 7177 1.153549 GAGGGGAGTCACGTGATGC 60.154 63.158 23.12 16.06 0.00 3.91
6839 7272 3.857157 TTGACCCTTGACTGCTTTACT 57.143 42.857 0.00 0.00 0.00 2.24
6840 7273 4.967084 TTGACCCTTGACTGCTTTACTA 57.033 40.909 0.00 0.00 0.00 1.82
6841 7274 4.267349 TGACCCTTGACTGCTTTACTAC 57.733 45.455 0.00 0.00 0.00 2.73
6842 7275 3.901844 TGACCCTTGACTGCTTTACTACT 59.098 43.478 0.00 0.00 0.00 2.57
6843 7276 4.347000 TGACCCTTGACTGCTTTACTACTT 59.653 41.667 0.00 0.00 0.00 2.24
6846 7279 4.455877 CCCTTGACTGCTTTACTACTTTGG 59.544 45.833 0.00 0.00 0.00 3.28
6847 7280 5.063880 CCTTGACTGCTTTACTACTTTGGT 58.936 41.667 0.00 0.00 0.00 3.67
6848 7281 5.049405 CCTTGACTGCTTTACTACTTTGGTG 60.049 44.000 0.00 0.00 0.00 4.17
6853 7286 6.792326 ACTGCTTTACTACTTTGGTGAAAAC 58.208 36.000 0.00 0.00 0.00 2.43
6867 7300 3.814283 GGTGAAAACCCACAATACGTACA 59.186 43.478 0.00 0.00 38.74 2.90
6868 7301 4.319694 GGTGAAAACCCACAATACGTACAC 60.320 45.833 0.00 0.00 38.74 2.90
6869 7302 4.512571 GTGAAAACCCACAATACGTACACT 59.487 41.667 0.00 0.00 37.04 3.55
6871 7304 5.927689 TGAAAACCCACAATACGTACACTAG 59.072 40.000 0.00 0.00 0.00 2.57
6875 7308 4.096984 ACCCACAATACGTACACTAGTAGC 59.903 45.833 0.00 0.00 0.00 3.58
6888 7321 5.373222 ACACTAGTAGCAGTAGATCTGAGG 58.627 45.833 5.18 0.00 46.27 3.86
6889 7322 4.759693 CACTAGTAGCAGTAGATCTGAGGG 59.240 50.000 5.18 0.00 46.27 4.30
6891 7324 3.827722 AGTAGCAGTAGATCTGAGGGAC 58.172 50.000 5.18 0.00 46.27 4.46
6892 7325 3.461831 AGTAGCAGTAGATCTGAGGGACT 59.538 47.826 5.18 0.00 46.27 3.85
6895 7328 2.482839 GCAGTAGATCTGAGGGACTTGC 60.483 54.545 5.18 3.80 46.27 4.01
6896 7329 2.028130 AGTAGATCTGAGGGACTTGCG 58.972 52.381 5.18 0.00 41.55 4.85
6897 7330 1.067821 GTAGATCTGAGGGACTTGCGG 59.932 57.143 5.18 0.00 41.55 5.69
6898 7331 0.616111 AGATCTGAGGGACTTGCGGT 60.616 55.000 0.00 0.00 41.55 5.68
6899 7332 1.112113 GATCTGAGGGACTTGCGGTA 58.888 55.000 0.00 0.00 41.55 4.02
6900 7333 1.067821 GATCTGAGGGACTTGCGGTAG 59.932 57.143 0.00 0.00 41.55 3.18
6901 7334 0.251653 TCTGAGGGACTTGCGGTAGT 60.252 55.000 0.00 0.00 41.55 2.73
6902 7335 1.005097 TCTGAGGGACTTGCGGTAGTA 59.995 52.381 0.00 0.00 41.55 1.82
6903 7336 1.134560 CTGAGGGACTTGCGGTAGTAC 59.865 57.143 0.00 0.00 41.55 2.73
6905 7338 1.755380 GAGGGACTTGCGGTAGTACAT 59.245 52.381 2.06 0.00 41.55 2.29
6908 7341 2.934553 GGGACTTGCGGTAGTACATTTC 59.065 50.000 2.06 0.00 30.06 2.17
6909 7342 3.592059 GGACTTGCGGTAGTACATTTCA 58.408 45.455 2.06 0.00 0.00 2.69
6950 7400 3.128764 GGAAGGTTGAAAGATAAAGGGCG 59.871 47.826 0.00 0.00 0.00 6.13
7073 7523 4.528002 TCGAGCGTCGACTGTTTC 57.472 55.556 14.70 4.87 44.82 2.78
7095 7545 6.630444 TCTCGTCAGTGGTATTATTCTACC 57.370 41.667 0.00 0.00 41.39 3.18
7096 7546 6.124340 TCTCGTCAGTGGTATTATTCTACCA 58.876 40.000 0.00 0.00 46.97 3.25
7143 7595 9.212641 CAGAATATACACTGTCCATTCATAAGG 57.787 37.037 13.96 0.00 0.00 2.69
7144 7596 7.880195 AGAATATACACTGTCCATTCATAAGGC 59.120 37.037 13.96 0.00 0.00 4.35
7145 7597 5.636903 ATACACTGTCCATTCATAAGGCT 57.363 39.130 0.00 0.00 0.00 4.58
7146 7598 3.614092 ACACTGTCCATTCATAAGGCTG 58.386 45.455 0.00 0.00 0.00 4.85
7147 7599 2.947652 CACTGTCCATTCATAAGGCTGG 59.052 50.000 0.00 0.00 0.00 4.85
7148 7600 2.578021 ACTGTCCATTCATAAGGCTGGT 59.422 45.455 0.00 0.00 0.00 4.00
7149 7601 3.010584 ACTGTCCATTCATAAGGCTGGTT 59.989 43.478 0.00 0.00 0.00 3.67
7150 7602 3.355378 TGTCCATTCATAAGGCTGGTTG 58.645 45.455 0.00 0.00 0.00 3.77
7151 7603 3.245229 TGTCCATTCATAAGGCTGGTTGT 60.245 43.478 0.00 0.00 0.00 3.32
7152 7604 4.018870 TGTCCATTCATAAGGCTGGTTGTA 60.019 41.667 0.00 0.00 0.00 2.41
7153 7605 4.947388 GTCCATTCATAAGGCTGGTTGTAA 59.053 41.667 0.00 0.00 0.00 2.41
7154 7606 5.594317 GTCCATTCATAAGGCTGGTTGTAAT 59.406 40.000 0.00 0.00 0.00 1.89
7155 7607 5.593909 TCCATTCATAAGGCTGGTTGTAATG 59.406 40.000 0.00 0.00 0.00 1.90
7156 7608 5.593909 CCATTCATAAGGCTGGTTGTAATGA 59.406 40.000 0.00 0.00 0.00 2.57
7157 7609 6.266103 CCATTCATAAGGCTGGTTGTAATGAT 59.734 38.462 0.00 0.00 0.00 2.45
7158 7610 7.448161 CCATTCATAAGGCTGGTTGTAATGATA 59.552 37.037 0.00 0.00 0.00 2.15
7159 7611 8.509690 CATTCATAAGGCTGGTTGTAATGATAG 58.490 37.037 0.00 0.00 0.00 2.08
7160 7612 7.136822 TCATAAGGCTGGTTGTAATGATAGT 57.863 36.000 0.00 0.00 0.00 2.12
7161 7613 8.257602 TCATAAGGCTGGTTGTAATGATAGTA 57.742 34.615 0.00 0.00 0.00 1.82
7162 7614 8.710239 TCATAAGGCTGGTTGTAATGATAGTAA 58.290 33.333 0.00 0.00 0.00 2.24
7163 7615 9.507329 CATAAGGCTGGTTGTAATGATAGTAAT 57.493 33.333 0.00 0.00 0.00 1.89
7164 7616 9.726438 ATAAGGCTGGTTGTAATGATAGTAATC 57.274 33.333 0.00 0.00 0.00 1.75
7165 7617 7.136822 AGGCTGGTTGTAATGATAGTAATCA 57.863 36.000 0.00 0.00 46.01 2.57
7180 7632 9.088987 TGATAGTAATCATACATGCCAACTAGA 57.911 33.333 0.00 0.00 37.20 2.43
7181 7633 9.360093 GATAGTAATCATACATGCCAACTAGAC 57.640 37.037 0.00 0.00 34.29 2.59
7182 7634 7.124573 AGTAATCATACATGCCAACTAGACA 57.875 36.000 0.00 0.00 34.29 3.41
7183 7635 7.564793 AGTAATCATACATGCCAACTAGACAA 58.435 34.615 0.00 0.00 34.29 3.18
7184 7636 8.046708 AGTAATCATACATGCCAACTAGACAAA 58.953 33.333 0.00 0.00 34.29 2.83
7185 7637 7.886629 AATCATACATGCCAACTAGACAAAT 57.113 32.000 0.00 0.00 0.00 2.32
7186 7638 7.886629 ATCATACATGCCAACTAGACAAATT 57.113 32.000 0.00 0.00 0.00 1.82
7187 7639 7.701539 TCATACATGCCAACTAGACAAATTT 57.298 32.000 0.00 0.00 0.00 1.82
7188 7640 7.537715 TCATACATGCCAACTAGACAAATTTG 58.462 34.615 16.67 16.67 0.00 2.32
7189 7641 7.392953 TCATACATGCCAACTAGACAAATTTGA 59.607 33.333 24.64 1.45 0.00 2.69
7190 7642 6.594788 ACATGCCAACTAGACAAATTTGAT 57.405 33.333 24.64 14.26 0.00 2.57
7191 7643 6.392354 ACATGCCAACTAGACAAATTTGATG 58.608 36.000 24.64 14.55 0.00 3.07
7192 7644 6.209192 ACATGCCAACTAGACAAATTTGATGA 59.791 34.615 24.64 7.68 0.00 2.92
7193 7645 6.258230 TGCCAACTAGACAAATTTGATGAG 57.742 37.500 24.64 17.67 0.00 2.90
7194 7646 5.183713 TGCCAACTAGACAAATTTGATGAGG 59.816 40.000 24.64 15.50 0.00 3.86
7195 7647 5.183904 GCCAACTAGACAAATTTGATGAGGT 59.816 40.000 24.64 12.82 0.00 3.85
7196 7648 6.615088 CCAACTAGACAAATTTGATGAGGTG 58.385 40.000 24.64 21.66 0.00 4.00
7197 7649 6.430925 CCAACTAGACAAATTTGATGAGGTGA 59.569 38.462 24.64 0.68 0.00 4.02
7198 7650 7.301054 CAACTAGACAAATTTGATGAGGTGAC 58.699 38.462 24.64 4.63 0.00 3.67
7199 7651 6.533730 ACTAGACAAATTTGATGAGGTGACA 58.466 36.000 24.64 0.00 0.00 3.58
7200 7652 7.170965 ACTAGACAAATTTGATGAGGTGACAT 58.829 34.615 24.64 0.00 0.00 3.06
7201 7653 6.263516 AGACAAATTTGATGAGGTGACATG 57.736 37.500 24.64 0.00 0.00 3.21
7202 7654 5.184479 AGACAAATTTGATGAGGTGACATGG 59.816 40.000 24.64 0.00 0.00 3.66
7203 7655 5.078949 ACAAATTTGATGAGGTGACATGGA 58.921 37.500 24.64 0.00 0.00 3.41
7204 7656 5.539574 ACAAATTTGATGAGGTGACATGGAA 59.460 36.000 24.64 0.00 0.00 3.53
7205 7657 6.211986 ACAAATTTGATGAGGTGACATGGAAT 59.788 34.615 24.64 0.00 0.00 3.01
7206 7658 6.862469 AATTTGATGAGGTGACATGGAATT 57.138 33.333 0.00 0.00 0.00 2.17
7207 7659 7.959658 AATTTGATGAGGTGACATGGAATTA 57.040 32.000 0.00 0.00 0.00 1.40
7208 7660 7.959658 ATTTGATGAGGTGACATGGAATTAA 57.040 32.000 0.00 0.00 0.00 1.40
7209 7661 7.773489 TTTGATGAGGTGACATGGAATTAAA 57.227 32.000 0.00 0.00 0.00 1.52
7210 7662 7.959658 TTGATGAGGTGACATGGAATTAAAT 57.040 32.000 0.00 0.00 0.00 1.40
7211 7663 7.337480 TGATGAGGTGACATGGAATTAAATG 57.663 36.000 0.00 0.00 0.00 2.32
7212 7664 7.118060 TGATGAGGTGACATGGAATTAAATGA 58.882 34.615 0.00 0.00 0.00 2.57
7213 7665 7.614974 TGATGAGGTGACATGGAATTAAATGAA 59.385 33.333 0.00 0.00 0.00 2.57
7214 7666 7.773489 TGAGGTGACATGGAATTAAATGAAA 57.227 32.000 0.00 0.00 0.00 2.69
7215 7667 8.187913 TGAGGTGACATGGAATTAAATGAAAA 57.812 30.769 0.00 0.00 0.00 2.29
7216 7668 8.646004 TGAGGTGACATGGAATTAAATGAAAAA 58.354 29.630 0.00 0.00 0.00 1.94
7217 7669 9.143631 GAGGTGACATGGAATTAAATGAAAAAG 57.856 33.333 0.00 0.00 0.00 2.27
7218 7670 8.869109 AGGTGACATGGAATTAAATGAAAAAGA 58.131 29.630 0.00 0.00 0.00 2.52
7219 7671 9.143631 GGTGACATGGAATTAAATGAAAAAGAG 57.856 33.333 0.00 0.00 0.00 2.85
7220 7672 9.912634 GTGACATGGAATTAAATGAAAAAGAGA 57.087 29.630 0.00 0.00 0.00 3.10
7277 7729 8.962884 ATTGATGTACTATTATGTGTCTTGCA 57.037 30.769 0.00 0.00 0.00 4.08
7278 7730 8.962884 TTGATGTACTATTATGTGTCTTGCAT 57.037 30.769 0.00 0.00 0.00 3.96
7279 7731 8.369218 TGATGTACTATTATGTGTCTTGCATG 57.631 34.615 0.00 0.00 0.00 4.06
7280 7732 7.442062 TGATGTACTATTATGTGTCTTGCATGG 59.558 37.037 0.00 0.00 0.00 3.66
7281 7733 5.527214 TGTACTATTATGTGTCTTGCATGGC 59.473 40.000 0.00 0.00 0.00 4.40
7282 7734 4.525996 ACTATTATGTGTCTTGCATGGCA 58.474 39.130 2.24 2.24 36.47 4.92
7283 7735 4.949238 ACTATTATGTGTCTTGCATGGCAA 59.051 37.500 8.64 3.40 46.80 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.749091 CCATGGATCGCTCCTTTGCA 60.749 55.000 5.56 0.00 42.59 4.08
1 2 0.464373 TCCATGGATCGCTCCTTTGC 60.464 55.000 11.44 0.00 42.59 3.68
2 3 1.303309 GTCCATGGATCGCTCCTTTG 58.697 55.000 19.62 4.55 42.59 2.77
5 6 3.133014 CGTCCATGGATCGCTCCT 58.867 61.111 19.62 0.00 42.59 3.69
6 7 2.663188 GCGTCCATGGATCGCTCC 60.663 66.667 34.55 17.38 45.29 4.70
7 8 2.721971 ATGGCGTCCATGGATCGCTC 62.722 60.000 37.11 30.79 43.39 5.03
8 9 2.811514 ATGGCGTCCATGGATCGCT 61.812 57.895 37.11 26.29 43.39 4.93
9 10 2.281070 ATGGCGTCCATGGATCGC 60.281 61.111 34.35 34.35 43.39 4.58
16 17 2.755469 GTTGGGCATGGCGTCCAT 60.755 61.111 13.76 5.65 46.37 3.41
19 20 3.799755 GACGTTGGGCATGGCGTC 61.800 66.667 13.76 10.93 44.93 5.19
22 23 2.988684 TTGGACGTTGGGCATGGC 60.989 61.111 11.56 11.56 0.00 4.40
23 24 1.586154 GAGTTGGACGTTGGGCATGG 61.586 60.000 0.00 0.00 0.00 3.66
24 25 1.586154 GGAGTTGGACGTTGGGCATG 61.586 60.000 0.00 0.00 0.00 4.06
25 26 1.303317 GGAGTTGGACGTTGGGCAT 60.303 57.895 0.00 0.00 0.00 4.40
26 27 2.112297 GGAGTTGGACGTTGGGCA 59.888 61.111 0.00 0.00 0.00 5.36
27 28 1.515521 CTTGGAGTTGGACGTTGGGC 61.516 60.000 0.00 0.00 0.00 5.36
28 29 1.515521 GCTTGGAGTTGGACGTTGGG 61.516 60.000 0.00 0.00 0.00 4.12
29 30 0.535102 AGCTTGGAGTTGGACGTTGG 60.535 55.000 0.00 0.00 0.00 3.77
30 31 1.002468 CAAGCTTGGAGTTGGACGTTG 60.002 52.381 19.14 0.00 0.00 4.10
31 32 1.308998 CAAGCTTGGAGTTGGACGTT 58.691 50.000 19.14 0.00 0.00 3.99
32 33 1.166531 GCAAGCTTGGAGTTGGACGT 61.167 55.000 27.10 0.00 0.00 4.34
33 34 0.886490 AGCAAGCTTGGAGTTGGACG 60.886 55.000 27.10 0.00 0.00 4.79
34 35 1.807142 GTAGCAAGCTTGGAGTTGGAC 59.193 52.381 27.10 8.35 0.00 4.02
35 36 1.608025 CGTAGCAAGCTTGGAGTTGGA 60.608 52.381 27.10 0.00 0.00 3.53
36 37 0.798776 CGTAGCAAGCTTGGAGTTGG 59.201 55.000 27.10 0.66 0.00 3.77
37 38 1.795768 TCGTAGCAAGCTTGGAGTTG 58.204 50.000 27.10 2.17 0.00 3.16
38 39 2.417719 CTTCGTAGCAAGCTTGGAGTT 58.582 47.619 27.10 2.68 0.00 3.01
39 40 1.941668 GCTTCGTAGCAAGCTTGGAGT 60.942 52.381 27.10 3.14 46.95 3.85
40 41 0.723981 GCTTCGTAGCAAGCTTGGAG 59.276 55.000 27.10 6.62 46.95 3.86
41 42 2.840974 GCTTCGTAGCAAGCTTGGA 58.159 52.632 27.10 13.28 46.95 3.53
58 59 2.097160 CACAGAATCAGCACGCGC 59.903 61.111 5.73 0.00 38.99 6.86
59 60 2.743752 CCCACAGAATCAGCACGCG 61.744 63.158 3.53 3.53 0.00 6.01
75 76 3.055602 ACACGAATAAAGGTACCACTCCC 60.056 47.826 15.94 0.00 0.00 4.30
81 82 6.531594 GGTTACTACACACGAATAAAGGTACC 59.468 42.308 2.73 2.73 0.00 3.34
90 91 3.366679 CGACAGGGTTACTACACACGAAT 60.367 47.826 0.00 0.00 0.00 3.34
100 101 2.959707 GAGATGGATCGACAGGGTTACT 59.040 50.000 0.00 0.00 0.00 2.24
101 102 2.693591 TGAGATGGATCGACAGGGTTAC 59.306 50.000 0.00 0.00 0.00 2.50
106 107 1.539929 GGCTTGAGATGGATCGACAGG 60.540 57.143 0.00 0.00 0.00 4.00
137 138 0.249911 AATATCTCCGCCGGAACTGC 60.250 55.000 7.50 0.00 34.43 4.40
148 149 5.241728 GGTTGCCCTGAACAATAATATCTCC 59.758 44.000 0.00 0.00 0.00 3.71
205 206 2.936498 CGTACAGTGGCCTCCAAATTAG 59.064 50.000 3.32 0.00 34.18 1.73
217 218 1.702886 CAGCAAGAGACGTACAGTGG 58.297 55.000 0.00 0.00 0.00 4.00
236 237 6.917217 TCTTCTTCTAGTAGTAGTAACGGC 57.083 41.667 4.51 0.00 0.00 5.68
246 247 6.908284 CGTCGATTTCCTTCTTCTTCTAGTAG 59.092 42.308 0.00 0.00 0.00 2.57
247 248 6.596888 TCGTCGATTTCCTTCTTCTTCTAGTA 59.403 38.462 0.00 0.00 0.00 1.82
248 249 5.415077 TCGTCGATTTCCTTCTTCTTCTAGT 59.585 40.000 0.00 0.00 0.00 2.57
249 250 5.740099 GTCGTCGATTTCCTTCTTCTTCTAG 59.260 44.000 0.00 0.00 0.00 2.43
250 251 5.182570 TGTCGTCGATTTCCTTCTTCTTCTA 59.817 40.000 0.00 0.00 0.00 2.10
259 260 1.000955 ACTGCTGTCGTCGATTTCCTT 59.999 47.619 0.00 0.00 0.00 3.36
268 269 2.059541 GTGAAAGGTACTGCTGTCGTC 58.940 52.381 0.00 0.00 40.86 4.20
276 277 2.806244 CCCTGAAACGTGAAAGGTACTG 59.194 50.000 9.18 0.00 40.86 2.74
366 368 1.447838 CCTCCCAACACGATGGACG 60.448 63.158 7.98 0.00 43.54 4.79
370 372 1.450312 GGCTCCTCCCAACACGATG 60.450 63.158 0.00 0.00 0.00 3.84
400 402 0.460284 ACCGATCGATCAACACTGGC 60.460 55.000 24.40 0.00 0.00 4.85
401 403 1.560923 GACCGATCGATCAACACTGG 58.439 55.000 24.40 17.61 0.00 4.00
435 437 0.793861 CCGATCGTTCCTCGCAAAAA 59.206 50.000 15.09 0.00 39.67 1.94
436 438 0.320073 ACCGATCGTTCCTCGCAAAA 60.320 50.000 15.09 0.00 39.67 2.44
437 439 0.734942 GACCGATCGTTCCTCGCAAA 60.735 55.000 15.09 0.00 39.67 3.68
438 440 1.153901 GACCGATCGTTCCTCGCAA 60.154 57.895 15.09 0.00 39.67 4.85
439 441 2.488355 GACCGATCGTTCCTCGCA 59.512 61.111 15.09 0.00 39.67 5.10
440 442 2.651232 CGACCGATCGTTCCTCGC 60.651 66.667 15.09 0.00 43.66 5.03
468 470 1.937899 GCGTGTGTTGGTGTAAACTCT 59.062 47.619 0.00 0.00 0.00 3.24
515 556 2.041115 GCACGCTTTCCCCTTCCTC 61.041 63.158 0.00 0.00 0.00 3.71
523 564 2.391389 CCCTTCTCGCACGCTTTCC 61.391 63.158 0.00 0.00 0.00 3.13
524 565 3.028366 GCCCTTCTCGCACGCTTTC 62.028 63.158 0.00 0.00 0.00 2.62
554 595 1.356527 CCCGGCGTTTTTACTCCTCG 61.357 60.000 6.01 0.00 0.00 4.63
635 679 1.456705 GGCTGTCTCCTCTCCCGAT 60.457 63.158 0.00 0.00 0.00 4.18
636 680 2.043852 GGCTGTCTCCTCTCCCGA 60.044 66.667 0.00 0.00 0.00 5.14
637 681 2.363018 TGGCTGTCTCCTCTCCCG 60.363 66.667 0.00 0.00 0.00 5.14
638 682 0.398381 ATCTGGCTGTCTCCTCTCCC 60.398 60.000 0.00 0.00 0.00 4.30
793 883 3.614150 GCCTTTCCCAAAACGAGATTTCC 60.614 47.826 0.00 0.00 0.00 3.13
877 992 4.950475 GGGAGAAAGGGAAGGAAATAACTG 59.050 45.833 0.00 0.00 0.00 3.16
898 1013 1.694525 GAGGAGGAGGGGGAAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
902 1017 2.647949 GGAGGAGGAGGAGGGGGAA 61.648 68.421 0.00 0.00 0.00 3.97
903 1018 3.036959 GGAGGAGGAGGAGGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
904 1019 3.039526 AGGAGGAGGAGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
905 1020 2.018086 AGAGGAGGAGGAGGAGGGG 61.018 68.421 0.00 0.00 0.00 4.79
906 1021 1.541672 GAGAGGAGGAGGAGGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
907 1022 0.998945 AGGAGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
908 1023 0.478507 GAGGAGAGGAGGAGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
909 1024 0.047176 AGAGGAGAGGAGGAGGAGGA 59.953 60.000 0.00 0.00 0.00 3.71
910 1025 0.185901 CAGAGGAGAGGAGGAGGAGG 59.814 65.000 0.00 0.00 0.00 4.30
911 1026 0.468029 GCAGAGGAGAGGAGGAGGAG 60.468 65.000 0.00 0.00 0.00 3.69
912 1027 1.618030 GCAGAGGAGAGGAGGAGGA 59.382 63.158 0.00 0.00 0.00 3.71
913 1028 1.457455 GGCAGAGGAGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
914 1029 1.457455 GGGCAGAGGAGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
915 1030 2.693017 GGGCAGAGGAGAGGAGGA 59.307 66.667 0.00 0.00 0.00 3.71
957 1072 1.100510 GGGGATAAAAAGGTGCGACC 58.899 55.000 0.00 0.00 38.99 4.79
958 1073 1.100510 GGGGGATAAAAAGGTGCGAC 58.899 55.000 0.00 0.00 0.00 5.19
1001 1126 3.202706 GCAAATCCGAGCCGTCCC 61.203 66.667 0.00 0.00 0.00 4.46
1002 1127 3.564027 CGCAAATCCGAGCCGTCC 61.564 66.667 0.00 0.00 0.00 4.79
1003 1128 3.564027 CCGCAAATCCGAGCCGTC 61.564 66.667 0.00 0.00 0.00 4.79
1006 1131 1.845809 CTATGCCGCAAATCCGAGCC 61.846 60.000 0.00 0.00 0.00 4.70
1007 1132 0.880278 TCTATGCCGCAAATCCGAGC 60.880 55.000 0.00 0.00 0.00 5.03
1008 1133 1.800805 ATCTATGCCGCAAATCCGAG 58.199 50.000 0.00 0.00 0.00 4.63
1009 1134 2.254546 AATCTATGCCGCAAATCCGA 57.745 45.000 0.00 0.00 0.00 4.55
1010 1135 3.667960 GCTTAATCTATGCCGCAAATCCG 60.668 47.826 0.00 0.00 0.00 4.18
1011 1136 3.503748 AGCTTAATCTATGCCGCAAATCC 59.496 43.478 0.00 0.00 0.00 3.01
1019 1144 3.731274 GCGCTAAGCTTAATCTATGCC 57.269 47.619 7.74 0.00 44.04 4.40
1084 1218 4.060900 TCTCTCTGCTTTGTTTAGTGCTG 58.939 43.478 0.00 0.00 0.00 4.41
1109 1245 1.269831 CCTTTTATCCTCGCCCTCTCG 60.270 57.143 0.00 0.00 0.00 4.04
1154 1292 1.659954 CGCTATGCCTCGTCTGCTC 60.660 63.158 0.00 0.00 0.00 4.26
1220 1370 4.320567 GGAAAAGCCGAGGAAAAGAAAGAG 60.321 45.833 0.00 0.00 0.00 2.85
1235 1385 2.087462 AAACAGCCAGCGGAAAAGCC 62.087 55.000 0.00 0.00 38.01 4.35
1239 1389 0.102120 CAACAAACAGCCAGCGGAAA 59.898 50.000 0.00 0.00 0.00 3.13
1241 1391 2.844451 GCAACAAACAGCCAGCGGA 61.844 57.895 0.00 0.00 0.00 5.54
1243 1393 0.598158 AATGCAACAAACAGCCAGCG 60.598 50.000 0.00 0.00 0.00 5.18
1253 1417 0.248825 GTCGGTGTGCAATGCAACAA 60.249 50.000 10.44 0.00 41.47 2.83
1307 1471 1.754380 TAGAGTGGTGTTGTGCGGCT 61.754 55.000 0.00 0.00 0.00 5.52
1308 1472 1.291877 CTAGAGTGGTGTTGTGCGGC 61.292 60.000 0.00 0.00 0.00 6.53
1309 1473 1.291877 GCTAGAGTGGTGTTGTGCGG 61.292 60.000 0.00 0.00 0.00 5.69
1310 1474 0.599991 TGCTAGAGTGGTGTTGTGCG 60.600 55.000 0.00 0.00 0.00 5.34
1350 1518 1.550524 TGAAGGCTACTGGTACTGCTG 59.449 52.381 0.00 0.00 0.00 4.41
1356 1524 3.507411 AGTGAAGTGAAGGCTACTGGTA 58.493 45.455 0.00 0.00 0.00 3.25
1432 1600 4.671590 TCACCACGGCGAGGGAGA 62.672 66.667 26.55 20.07 0.00 3.71
1433 1601 4.135153 CTCACCACGGCGAGGGAG 62.135 72.222 26.55 22.99 0.00 4.30
1445 1613 4.487412 GCAATGCCGCTGCTCACC 62.487 66.667 0.70 0.00 38.71 4.02
1491 1661 1.578206 GCCTCGACCAAGAACCTTGC 61.578 60.000 1.39 0.00 0.00 4.01
1492 1662 0.955919 GGCCTCGACCAAGAACCTTG 60.956 60.000 0.00 0.00 0.00 3.61
1493 1663 1.375326 GGCCTCGACCAAGAACCTT 59.625 57.895 0.00 0.00 0.00 3.50
1494 1664 2.943978 CGGCCTCGACCAAGAACCT 61.944 63.158 0.00 0.00 39.00 3.50
1496 1666 1.005394 TTCGGCCTCGACCAAGAAC 60.005 57.895 0.00 0.00 45.92 3.01
1514 1684 1.518572 GATCACGCACGAATCCGGT 60.519 57.895 0.00 0.00 40.78 5.28
1598 1789 1.823169 CGGACTCGGAACAGGGGAAA 61.823 60.000 0.00 0.00 0.00 3.13
1642 1834 2.898705 CTCCTCAAATCTGGAACCGAG 58.101 52.381 0.00 0.00 31.23 4.63
1702 1894 0.547075 CTCCCCTCCTCTCGTCTGTA 59.453 60.000 0.00 0.00 0.00 2.74
1704 1896 0.465460 CTCTCCCCTCCTCTCGTCTG 60.465 65.000 0.00 0.00 0.00 3.51
1708 1900 0.179029 GACTCTCTCCCCTCCTCTCG 60.179 65.000 0.00 0.00 0.00 4.04
1750 1942 0.878961 GGGTCGAATTTATCCGCGCT 60.879 55.000 5.56 0.00 0.00 5.92
1847 2041 2.065906 GAGAAGTAGGGCGGCTCTCG 62.066 65.000 5.18 0.00 42.76 4.04
1848 2042 0.753848 AGAGAAGTAGGGCGGCTCTC 60.754 60.000 5.18 14.90 30.58 3.20
1849 2043 0.324830 AAGAGAAGTAGGGCGGCTCT 60.325 55.000 7.85 7.85 37.53 4.09
1851 2045 1.331399 GGAAGAGAAGTAGGGCGGCT 61.331 60.000 9.56 0.00 0.00 5.52
1852 2046 1.144276 GGAAGAGAAGTAGGGCGGC 59.856 63.158 0.00 0.00 0.00 6.53
1854 2048 1.475403 TGAGGAAGAGAAGTAGGGCG 58.525 55.000 0.00 0.00 0.00 6.13
1855 2049 3.709141 AGATTGAGGAAGAGAAGTAGGGC 59.291 47.826 0.00 0.00 0.00 5.19
1857 2051 5.068987 CCAGAGATTGAGGAAGAGAAGTAGG 59.931 48.000 0.00 0.00 0.00 3.18
1858 2052 5.656416 ACCAGAGATTGAGGAAGAGAAGTAG 59.344 44.000 0.00 0.00 0.00 2.57
1859 2053 5.584913 ACCAGAGATTGAGGAAGAGAAGTA 58.415 41.667 0.00 0.00 0.00 2.24
1860 2054 4.424842 ACCAGAGATTGAGGAAGAGAAGT 58.575 43.478 0.00 0.00 0.00 3.01
1861 2055 5.418676 GAACCAGAGATTGAGGAAGAGAAG 58.581 45.833 0.00 0.00 0.00 2.85
1862 2056 4.223923 GGAACCAGAGATTGAGGAAGAGAA 59.776 45.833 0.00 0.00 0.00 2.87
1863 2057 3.772025 GGAACCAGAGATTGAGGAAGAGA 59.228 47.826 0.00 0.00 0.00 3.10
1864 2058 3.517100 TGGAACCAGAGATTGAGGAAGAG 59.483 47.826 0.00 0.00 0.00 2.85
1880 2074 3.202706 GGCGGCTCGAATGGAACC 61.203 66.667 0.00 0.00 0.00 3.62
2077 2278 3.604582 AGAAAAGCAGAATCCTTCCTCG 58.395 45.455 0.00 0.00 0.00 4.63
2106 2307 6.267471 ACAACTTGAAATCCAAAAGGCTATCA 59.733 34.615 0.00 0.00 33.76 2.15
2132 2333 8.613482 GGTTGATTAATCTTTGCTAGAAGTACC 58.387 37.037 16.24 0.00 36.22 3.34
2157 2358 1.064296 CTAGAGCTGTACCGCACGG 59.936 63.158 12.05 7.71 42.03 4.94
2281 2482 0.681243 GGGAGGCCATGACTGAAACC 60.681 60.000 5.01 0.00 0.00 3.27
2294 2501 2.031768 GAGCGATGATGGGGAGGC 59.968 66.667 0.00 0.00 0.00 4.70
2309 2516 0.247934 GAAAAATTACGGGCGCGGAG 60.248 55.000 27.52 0.00 0.00 4.63
2310 2517 1.646624 GGAAAAATTACGGGCGCGGA 61.647 55.000 27.52 17.52 0.00 5.54
2314 2524 2.081462 AGTGAGGAAAAATTACGGGCG 58.919 47.619 0.00 0.00 0.00 6.13
2318 2528 5.447279 CCGATGGAAGTGAGGAAAAATTACG 60.447 44.000 0.00 0.00 0.00 3.18
2327 2537 0.611062 ACGTCCGATGGAAGTGAGGA 60.611 55.000 3.59 0.00 42.37 3.71
2328 2538 0.246635 AACGTCCGATGGAAGTGAGG 59.753 55.000 5.20 0.00 43.10 3.86
2415 2625 3.672511 GCGTCCTATGTGAAGAAACGAGA 60.673 47.826 0.00 0.00 31.30 4.04
2529 2756 2.393764 CGGACAAACAAAACATCTGCC 58.606 47.619 0.00 0.00 0.00 4.85
2593 2824 2.159572 CCTGACCGCGGTAAAGAAAATG 60.160 50.000 34.36 14.15 0.00 2.32
2599 2839 0.794473 GAAACCTGACCGCGGTAAAG 59.206 55.000 34.36 29.39 33.53 1.85
2613 2853 4.017126 CCCTGGGATCAAAAGTAGAAACC 58.983 47.826 7.01 0.00 0.00 3.27
2693 2934 0.610174 TAGACCAAGCAGAGGCAGTG 59.390 55.000 0.00 0.00 44.61 3.66
2694 2935 0.901124 CTAGACCAAGCAGAGGCAGT 59.099 55.000 0.00 0.00 44.61 4.40
2715 2956 5.178623 CCTGCGTCACTAACACAAATTTAGA 59.821 40.000 0.00 0.00 31.92 2.10
3048 3332 0.038599 TGACCGGTCTGTAGTAGGCA 59.961 55.000 33.39 8.70 30.64 4.75
3056 3340 1.367840 GCTTCAGTGACCGGTCTGT 59.632 57.895 33.39 18.78 33.89 3.41
3067 3351 1.523758 GGTCAACATTCCGCTTCAGT 58.476 50.000 0.00 0.00 0.00 3.41
3068 3352 0.443869 CGGTCAACATTCCGCTTCAG 59.556 55.000 0.00 0.00 40.28 3.02
3082 3366 2.490509 TCTTGATCTAAGAACGCGGTCA 59.509 45.455 28.31 5.47 42.31 4.02
3093 3377 9.288576 ACACATCAAACTCATTTCTTGATCTAA 57.711 29.630 0.00 0.00 37.63 2.10
3103 3387 3.304659 GGCGTGACACATCAAACTCATTT 60.305 43.478 6.37 0.00 36.31 2.32
3165 3449 2.498167 ACAAGGCAAAGTAGCACAGAG 58.502 47.619 0.00 0.00 35.83 3.35
3291 3575 3.603532 TCTGCACAGATAAAGGAAGCAG 58.396 45.455 0.00 0.00 46.76 4.24
3299 3583 5.012239 AGGCAAAGATTCTGCACAGATAAA 58.988 37.500 0.31 0.00 41.78 1.40
3351 3635 7.708752 CAGTCATCTAAATCTAACCCTCTTGAC 59.291 40.741 0.00 0.00 0.00 3.18
3357 3641 4.971924 AGCCAGTCATCTAAATCTAACCCT 59.028 41.667 0.00 0.00 0.00 4.34
3505 3795 7.601130 TCTTGAAATCTGCAAAGGATTGAAATG 59.399 33.333 0.84 0.00 38.94 2.32
3616 3907 0.888619 GCCCAGGGTTCTTGTTTAGC 59.111 55.000 7.55 0.00 0.00 3.09
3815 4106 3.184541 CACTAAACCTACGGTCCAATCG 58.815 50.000 0.00 0.00 33.12 3.34
3944 4235 6.950041 CCATATGGGAATGGTGAGAAATATGT 59.050 38.462 14.52 0.00 41.38 2.29
3952 4243 2.965671 AGCCATATGGGAATGGTGAG 57.034 50.000 23.30 0.00 46.93 3.51
4137 4442 9.624697 TTAACAAAAGCATCATCATGAAGTTAC 57.375 29.630 0.00 0.00 30.57 2.50
4224 4548 5.018809 ACTGTGAGAAATATGCCAACCATT 58.981 37.500 0.00 0.00 35.34 3.16
4361 4686 9.436957 ACAAGATTATCGAAATCAAGTAAGTGT 57.563 29.630 17.03 9.40 0.00 3.55
4422 4747 7.278646 GCAAGTGAAAAGGAGTTTGAGAATTTT 59.721 33.333 0.00 0.00 0.00 1.82
4478 4803 7.370383 ACAAAACAGAAGGTTGTATAATGCAG 58.630 34.615 0.00 0.00 40.35 4.41
4484 4809 7.554835 ACAACAGACAAAACAGAAGGTTGTATA 59.445 33.333 0.00 0.00 43.85 1.47
4537 4862 3.795101 CAGAATTTCTGCGCAATTCATCC 59.205 43.478 26.65 9.71 41.35 3.51
4579 4904 3.203716 GACACGAGGAAACCTTGTCTTT 58.796 45.455 7.63 0.00 44.34 2.52
4664 4989 7.569591 GCTTCCACATTACTATGTCGAATAAGC 60.570 40.741 0.00 0.00 43.07 3.09
4672 4997 5.023533 TCTGGCTTCCACATTACTATGTC 57.976 43.478 0.00 0.00 43.07 3.06
4756 5081 5.428253 TGGAAGAGAAATCCGGTAATTCAG 58.572 41.667 0.00 0.00 39.98 3.02
4860 5185 5.035443 CCGAAAACAACATTTCCGTGTAAA 58.965 37.500 0.00 0.00 36.21 2.01
4869 5194 2.765122 CATGGCCCGAAAACAACATTT 58.235 42.857 0.00 0.00 0.00 2.32
4872 5197 1.112315 AGCATGGCCCGAAAACAACA 61.112 50.000 0.00 0.00 0.00 3.33
4876 5201 1.079888 CCAAGCATGGCCCGAAAAC 60.080 57.895 0.00 0.00 40.58 2.43
4877 5202 3.375438 CCAAGCATGGCCCGAAAA 58.625 55.556 0.00 0.00 40.58 2.29
4902 5228 3.306917 TTCAAGCATGGCACTGAAATG 57.693 42.857 0.00 0.00 32.51 2.32
4910 5236 4.592942 AGAGAAGTAATTCAAGCATGGCA 58.407 39.130 5.62 0.00 0.00 4.92
4950 5276 1.807165 CACGTCCACATCTCCGCTG 60.807 63.158 0.00 0.00 0.00 5.18
4961 5287 1.770749 ATCCCGGGAAAACACGTCCA 61.771 55.000 30.84 0.00 36.83 4.02
4966 5292 3.349879 TTCCATCCCGGGAAAACAC 57.650 52.632 30.84 0.00 43.77 3.32
5134 5461 8.358895 AGTCAGTAAGTTCCTTTCAACTAGTAC 58.641 37.037 0.00 0.00 35.45 2.73
5136 5463 7.362802 AGTCAGTAAGTTCCTTTCAACTAGT 57.637 36.000 0.00 0.00 35.45 2.57
5144 5471 7.993758 AGAAAAGCTTAGTCAGTAAGTTCCTTT 59.006 33.333 0.00 0.48 40.47 3.11
5160 5487 8.755028 ACCTTTGGTAAGAAAAAGAAAAGCTTA 58.245 29.630 0.00 0.00 35.79 3.09
5260 5587 5.801531 AAATACTGTACACTGGTCTGTGA 57.198 39.130 13.54 0.00 40.12 3.58
5438 5765 4.499696 GGTCAGCTTGCACATACAAAAAGT 60.500 41.667 0.00 0.00 0.00 2.66
5520 5856 3.258872 AGCCTGCATTGCATAAACAGAAA 59.741 39.130 12.53 0.00 38.13 2.52
5573 5909 5.032327 TCTGATCATCCAACAGATCTTGG 57.968 43.478 7.07 7.07 40.92 3.61
5591 5927 8.469200 GGAAAAATATTGGACATTCACATCTGA 58.531 33.333 0.00 0.00 0.00 3.27
5625 5961 5.858049 GGGCGGTTACTAAAATGTTACAAAC 59.142 40.000 0.00 0.00 0.00 2.93
5628 5964 4.649692 TGGGCGGTTACTAAAATGTTACA 58.350 39.130 0.00 0.00 0.00 2.41
5645 5981 1.541233 CCTAGGCTTTACATCTGGGCG 60.541 57.143 0.00 0.00 0.00 6.13
5649 5985 5.295950 CATCTGTCCTAGGCTTTACATCTG 58.704 45.833 2.96 0.52 0.00 2.90
5667 6003 3.242543 GCTAAATGTTCTCCACGCATCTG 60.243 47.826 0.00 0.00 0.00 2.90
5718 6055 3.581755 TCACTCACGGGTAAAGAAATCG 58.418 45.455 0.00 0.00 0.00 3.34
5726 6063 4.610605 TTCAGAATTCACTCACGGGTAA 57.389 40.909 8.44 0.00 0.00 2.85
5727 6064 4.610605 TTTCAGAATTCACTCACGGGTA 57.389 40.909 8.44 0.00 0.00 3.69
5728 6065 3.485463 TTTCAGAATTCACTCACGGGT 57.515 42.857 8.44 0.00 0.00 5.28
5731 6068 6.302615 GTGAGATTTTCAGAATTCACTCACG 58.697 40.000 8.44 0.00 41.70 4.35
5733 6070 7.991084 ATGTGAGATTTTCAGAATTCACTCA 57.009 32.000 8.44 7.63 36.21 3.41
5741 6078 4.410099 AGGCCAATGTGAGATTTTCAGAA 58.590 39.130 5.01 0.00 36.21 3.02
5742 6079 4.038271 AGGCCAATGTGAGATTTTCAGA 57.962 40.909 5.01 0.00 36.21 3.27
5744 6081 5.076182 TGTTAGGCCAATGTGAGATTTTCA 58.924 37.500 5.01 0.00 0.00 2.69
5826 6171 1.600023 TCCGATGAACAAAGCCGTTT 58.400 45.000 0.00 0.00 0.00 3.60
5894 6239 1.104577 TCCAAACAAAGGGGCGACAC 61.105 55.000 0.00 0.00 0.00 3.67
5895 6240 0.821711 CTCCAAACAAAGGGGCGACA 60.822 55.000 0.00 0.00 0.00 4.35
5896 6241 1.524008 CCTCCAAACAAAGGGGCGAC 61.524 60.000 0.00 0.00 0.00 5.19
5899 6244 0.112412 TCTCCTCCAAACAAAGGGGC 59.888 55.000 0.00 0.00 32.77 5.80
6089 6457 6.683974 ATCATCATCCGGAAAAACTAACAG 57.316 37.500 9.01 0.00 0.00 3.16
6193 6563 0.798776 GCTTCTGAACCACATCACCG 59.201 55.000 0.00 0.00 0.00 4.94
6258 6633 2.833943 GGGCTTCACTTTCCCATTTCAT 59.166 45.455 0.00 0.00 39.82 2.57
6259 6634 2.247358 GGGCTTCACTTTCCCATTTCA 58.753 47.619 0.00 0.00 39.82 2.69
6260 6635 1.202348 CGGGCTTCACTTTCCCATTTC 59.798 52.381 0.00 0.00 40.05 2.17
6261 6636 1.256812 CGGGCTTCACTTTCCCATTT 58.743 50.000 0.00 0.00 40.05 2.32
6264 6639 2.434331 CCGGGCTTCACTTTCCCA 59.566 61.111 0.00 0.00 40.05 4.37
6265 6640 1.971695 CACCGGGCTTCACTTTCCC 60.972 63.158 6.32 0.00 36.68 3.97
6320 6695 3.290710 GCACCATGTATTCCAATGAGGT 58.709 45.455 0.00 0.00 39.02 3.85
6358 6733 4.557296 CGATTTTCGGGCGACTTAGGTATA 60.557 45.833 0.00 0.00 36.00 1.47
6359 6734 3.725490 GATTTTCGGGCGACTTAGGTAT 58.275 45.455 0.00 0.00 0.00 2.73
6361 6736 1.738030 CGATTTTCGGGCGACTTAGGT 60.738 52.381 0.00 0.00 36.00 3.08
6363 6738 1.917273 TCGATTTTCGGGCGACTTAG 58.083 50.000 0.00 0.00 40.88 2.18
6365 6740 1.734163 AATCGATTTTCGGGCGACTT 58.266 45.000 4.39 0.00 40.88 3.01
6366 6741 1.734163 AAATCGATTTTCGGGCGACT 58.266 45.000 17.60 0.00 40.88 4.18
6367 6742 2.437626 GAAAATCGATTTTCGGGCGAC 58.562 47.619 35.21 19.43 44.02 5.19
6390 6808 5.063204 CCGTTGGATCTTAATCTAATGGCA 58.937 41.667 9.06 0.00 46.36 4.92
6417 6836 2.979240 CGGAGGAAGAAGAAAGAAGGG 58.021 52.381 0.00 0.00 0.00 3.95
6447 6866 0.622665 AGGAGGAATGGTTGGAGCAG 59.377 55.000 0.00 0.00 0.00 4.24
6502 6921 4.634004 TCGCCATAGTTATGTGAAAGTTGG 59.366 41.667 0.00 0.00 31.82 3.77
6532 6952 4.253685 CAGTAACTTCACATGATTCGGGT 58.746 43.478 0.00 0.00 0.00 5.28
6533 6953 4.093408 CACAGTAACTTCACATGATTCGGG 59.907 45.833 0.00 0.00 0.00 5.14
6534 6954 4.436050 GCACAGTAACTTCACATGATTCGG 60.436 45.833 0.00 0.00 0.00 4.30
6535 6955 4.389992 AGCACAGTAACTTCACATGATTCG 59.610 41.667 0.00 0.00 0.00 3.34
6536 6956 5.869753 AGCACAGTAACTTCACATGATTC 57.130 39.130 0.00 0.00 0.00 2.52
6538 6958 6.467677 ACTAAGCACAGTAACTTCACATGAT 58.532 36.000 0.00 0.00 0.00 2.45
6539 6959 5.853936 ACTAAGCACAGTAACTTCACATGA 58.146 37.500 0.00 0.00 0.00 3.07
6540 6960 5.696270 TGACTAAGCACAGTAACTTCACATG 59.304 40.000 0.00 0.00 0.00 3.21
6541 6961 5.853936 TGACTAAGCACAGTAACTTCACAT 58.146 37.500 0.00 0.00 0.00 3.21
6542 6962 5.270893 TGACTAAGCACAGTAACTTCACA 57.729 39.130 0.00 0.00 0.00 3.58
6543 6963 4.686554 CCTGACTAAGCACAGTAACTTCAC 59.313 45.833 0.00 0.00 32.93 3.18
6586 7008 5.992217 CACTTGGTTCAGCTAATACTATCCC 59.008 44.000 0.00 0.00 0.00 3.85
6587 7009 5.992217 CCACTTGGTTCAGCTAATACTATCC 59.008 44.000 0.00 0.00 0.00 2.59
6633 7058 1.863662 CTGCAGAGCAAGCAACAGGG 61.864 60.000 8.42 0.00 42.17 4.45
6634 7059 1.170919 ACTGCAGAGCAAGCAACAGG 61.171 55.000 23.35 0.00 42.17 4.00
6655 7080 6.899393 TTCATCAAGTAGCCAAAGAATGTT 57.101 33.333 0.00 0.00 0.00 2.71
6658 7083 7.707624 TTCATTCATCAAGTAGCCAAAGAAT 57.292 32.000 0.00 0.00 0.00 2.40
6670 7096 7.922278 TCAAACCTTGTTCTTTCATTCATCAAG 59.078 33.333 0.00 0.00 0.00 3.02
6704 7130 0.455815 GCCAGGGACCAATTAAAGCG 59.544 55.000 0.00 0.00 0.00 4.68
6750 7177 2.202797 CCGGCAGGTGTGAGATCG 60.203 66.667 0.00 0.00 0.00 3.69
6799 7226 2.403252 AGAACCAGCCATTAACTCCG 57.597 50.000 0.00 0.00 0.00 4.63
6839 7272 5.008811 CGTATTGTGGGTTTTCACCAAAGTA 59.991 40.000 0.00 0.00 46.43 2.24
6840 7273 4.202070 CGTATTGTGGGTTTTCACCAAAGT 60.202 41.667 0.00 0.00 46.43 2.66
6841 7274 4.202070 ACGTATTGTGGGTTTTCACCAAAG 60.202 41.667 0.00 0.00 46.43 2.77
6842 7275 3.700038 ACGTATTGTGGGTTTTCACCAAA 59.300 39.130 0.00 0.00 46.43 3.28
6843 7276 3.288964 ACGTATTGTGGGTTTTCACCAA 58.711 40.909 0.00 0.00 46.43 3.67
6846 7279 4.512571 AGTGTACGTATTGTGGGTTTTCAC 59.487 41.667 0.00 0.00 38.09 3.18
6847 7280 4.706035 AGTGTACGTATTGTGGGTTTTCA 58.294 39.130 0.00 0.00 0.00 2.69
6848 7281 5.928264 ACTAGTGTACGTATTGTGGGTTTTC 59.072 40.000 0.00 0.00 0.00 2.29
6853 7286 4.096833 TGCTACTAGTGTACGTATTGTGGG 59.903 45.833 5.39 0.00 0.00 4.61
6867 7300 4.661240 TCCCTCAGATCTACTGCTACTAGT 59.339 45.833 0.00 0.00 45.38 2.57
6868 7301 5.001232 GTCCCTCAGATCTACTGCTACTAG 58.999 50.000 0.00 0.00 45.38 2.57
6869 7302 4.661240 AGTCCCTCAGATCTACTGCTACTA 59.339 45.833 0.00 0.00 45.38 1.82
6871 7304 3.827722 AGTCCCTCAGATCTACTGCTAC 58.172 50.000 0.00 0.00 45.38 3.58
6875 7308 2.223688 CGCAAGTCCCTCAGATCTACTG 60.224 54.545 0.00 0.00 46.97 2.74
6888 7321 3.592059 TGAAATGTACTACCGCAAGTCC 58.408 45.455 0.00 0.00 0.00 3.85
6889 7322 4.491676 TCTGAAATGTACTACCGCAAGTC 58.508 43.478 0.00 0.00 0.00 3.01
6891 7324 4.744570 TCTCTGAAATGTACTACCGCAAG 58.255 43.478 0.00 0.00 0.00 4.01
6892 7325 4.794278 TCTCTGAAATGTACTACCGCAA 57.206 40.909 0.00 0.00 0.00 4.85
6895 7328 4.341235 TCCCATCTCTGAAATGTACTACCG 59.659 45.833 0.00 0.00 0.00 4.02
6896 7329 5.598830 TCTCCCATCTCTGAAATGTACTACC 59.401 44.000 0.00 0.00 0.00 3.18
6897 7330 6.716934 TCTCCCATCTCTGAAATGTACTAC 57.283 41.667 0.00 0.00 0.00 2.73
6898 7331 7.301420 AGATCTCCCATCTCTGAAATGTACTA 58.699 38.462 0.00 0.00 0.00 1.82
6899 7332 6.142498 AGATCTCCCATCTCTGAAATGTACT 58.858 40.000 0.00 0.00 0.00 2.73
6900 7333 6.418057 AGATCTCCCATCTCTGAAATGTAC 57.582 41.667 0.00 0.00 0.00 2.90
6901 7334 6.210385 GCTAGATCTCCCATCTCTGAAATGTA 59.790 42.308 0.00 0.00 0.00 2.29
6902 7335 5.011943 GCTAGATCTCCCATCTCTGAAATGT 59.988 44.000 0.00 0.00 0.00 2.71
6903 7336 5.481105 GCTAGATCTCCCATCTCTGAAATG 58.519 45.833 0.00 0.00 0.00 2.32
6905 7338 3.571828 CGCTAGATCTCCCATCTCTGAAA 59.428 47.826 0.00 0.00 0.00 2.69
6908 7341 1.818060 CCGCTAGATCTCCCATCTCTG 59.182 57.143 0.00 0.00 0.00 3.35
6909 7342 1.272425 CCCGCTAGATCTCCCATCTCT 60.272 57.143 0.00 0.00 0.00 3.10
6966 7416 5.220796 CCGGCTTTATCTTTTACTTACTGCC 60.221 44.000 0.00 0.00 0.00 4.85
7009 7459 1.502163 GGGATCGCTCAAAGCATCCG 61.502 60.000 16.85 0.00 43.53 4.18
7010 7460 0.179034 AGGGATCGCTCAAAGCATCC 60.179 55.000 6.44 15.90 42.58 3.51
7095 7545 4.216042 TGGCAACATGTTGATACAGAAGTG 59.784 41.667 36.65 11.60 46.17 3.16
7096 7546 4.397420 TGGCAACATGTTGATACAGAAGT 58.603 39.130 36.65 0.00 46.17 3.01
7143 7595 9.489084 TGTATGATTACTATCATTACAACCAGC 57.511 33.333 6.00 0.00 46.88 4.85
7154 7606 9.088987 TCTAGTTGGCATGTATGATTACTATCA 57.911 33.333 0.00 0.00 44.52 2.15
7155 7607 9.360093 GTCTAGTTGGCATGTATGATTACTATC 57.640 37.037 0.00 0.00 0.00 2.08
7156 7608 8.870116 TGTCTAGTTGGCATGTATGATTACTAT 58.130 33.333 0.00 0.00 0.00 2.12
7157 7609 8.245195 TGTCTAGTTGGCATGTATGATTACTA 57.755 34.615 0.00 0.00 0.00 1.82
7158 7610 7.124573 TGTCTAGTTGGCATGTATGATTACT 57.875 36.000 0.00 0.00 0.00 2.24
7159 7611 7.786178 TTGTCTAGTTGGCATGTATGATTAC 57.214 36.000 0.00 0.00 0.00 1.89
7160 7612 8.978874 ATTTGTCTAGTTGGCATGTATGATTA 57.021 30.769 0.00 0.00 0.00 1.75
7161 7613 7.886629 ATTTGTCTAGTTGGCATGTATGATT 57.113 32.000 0.00 0.00 0.00 2.57
7162 7614 7.886629 AATTTGTCTAGTTGGCATGTATGAT 57.113 32.000 0.00 0.00 0.00 2.45
7163 7615 7.392953 TCAAATTTGTCTAGTTGGCATGTATGA 59.607 33.333 17.47 0.00 0.00 2.15
7164 7616 7.537715 TCAAATTTGTCTAGTTGGCATGTATG 58.462 34.615 17.47 0.00 0.00 2.39
7165 7617 7.701539 TCAAATTTGTCTAGTTGGCATGTAT 57.298 32.000 17.47 0.00 0.00 2.29
7166 7618 7.392953 TCATCAAATTTGTCTAGTTGGCATGTA 59.607 33.333 17.47 0.00 0.00 2.29
7167 7619 6.209192 TCATCAAATTTGTCTAGTTGGCATGT 59.791 34.615 17.47 0.00 0.00 3.21
7168 7620 6.623486 TCATCAAATTTGTCTAGTTGGCATG 58.377 36.000 17.47 9.76 0.00 4.06
7169 7621 6.127535 CCTCATCAAATTTGTCTAGTTGGCAT 60.128 38.462 17.47 0.00 0.00 4.40
7170 7622 5.183713 CCTCATCAAATTTGTCTAGTTGGCA 59.816 40.000 17.47 0.00 0.00 4.92
7171 7623 5.183904 ACCTCATCAAATTTGTCTAGTTGGC 59.816 40.000 17.47 0.00 0.00 4.52
7172 7624 6.430925 TCACCTCATCAAATTTGTCTAGTTGG 59.569 38.462 17.47 13.09 0.00 3.77
7173 7625 7.041167 TGTCACCTCATCAAATTTGTCTAGTTG 60.041 37.037 17.47 11.35 0.00 3.16
7174 7626 6.998074 TGTCACCTCATCAAATTTGTCTAGTT 59.002 34.615 17.47 0.25 0.00 2.24
7175 7627 6.533730 TGTCACCTCATCAAATTTGTCTAGT 58.466 36.000 17.47 7.71 0.00 2.57
7176 7628 7.414873 CCATGTCACCTCATCAAATTTGTCTAG 60.415 40.741 17.47 12.20 0.00 2.43
7177 7629 6.375174 CCATGTCACCTCATCAAATTTGTCTA 59.625 38.462 17.47 0.00 0.00 2.59
7178 7630 5.184479 CCATGTCACCTCATCAAATTTGTCT 59.816 40.000 17.47 4.34 0.00 3.41
7179 7631 5.183713 TCCATGTCACCTCATCAAATTTGTC 59.816 40.000 17.47 0.81 0.00 3.18
7180 7632 5.078949 TCCATGTCACCTCATCAAATTTGT 58.921 37.500 17.47 3.04 0.00 2.83
7181 7633 5.648178 TCCATGTCACCTCATCAAATTTG 57.352 39.130 12.15 12.15 0.00 2.32
7182 7634 6.862469 ATTCCATGTCACCTCATCAAATTT 57.138 33.333 0.00 0.00 0.00 1.82
7183 7635 6.862469 AATTCCATGTCACCTCATCAAATT 57.138 33.333 0.00 0.00 0.00 1.82
7184 7636 7.959658 TTAATTCCATGTCACCTCATCAAAT 57.040 32.000 0.00 0.00 0.00 2.32
7185 7637 7.773489 TTTAATTCCATGTCACCTCATCAAA 57.227 32.000 0.00 0.00 0.00 2.69
7186 7638 7.614974 TCATTTAATTCCATGTCACCTCATCAA 59.385 33.333 0.00 0.00 0.00 2.57
7187 7639 7.118060 TCATTTAATTCCATGTCACCTCATCA 58.882 34.615 0.00 0.00 0.00 3.07
7188 7640 7.572523 TCATTTAATTCCATGTCACCTCATC 57.427 36.000 0.00 0.00 0.00 2.92
7189 7641 7.959658 TTCATTTAATTCCATGTCACCTCAT 57.040 32.000 0.00 0.00 0.00 2.90
7190 7642 7.773489 TTTCATTTAATTCCATGTCACCTCA 57.227 32.000 0.00 0.00 0.00 3.86
7191 7643 9.143631 CTTTTTCATTTAATTCCATGTCACCTC 57.856 33.333 0.00 0.00 0.00 3.85
7192 7644 8.869109 TCTTTTTCATTTAATTCCATGTCACCT 58.131 29.630 0.00 0.00 0.00 4.00
7193 7645 9.143631 CTCTTTTTCATTTAATTCCATGTCACC 57.856 33.333 0.00 0.00 0.00 4.02
7194 7646 9.912634 TCTCTTTTTCATTTAATTCCATGTCAC 57.087 29.630 0.00 0.00 0.00 3.67
7251 7703 9.394767 TGCAAGACACATAATAGTACATCAATT 57.605 29.630 0.00 0.00 0.00 2.32
7252 7704 8.962884 TGCAAGACACATAATAGTACATCAAT 57.037 30.769 0.00 0.00 0.00 2.57
7253 7705 8.829612 CATGCAAGACACATAATAGTACATCAA 58.170 33.333 0.00 0.00 0.00 2.57
7254 7706 7.442062 CCATGCAAGACACATAATAGTACATCA 59.558 37.037 0.00 0.00 0.00 3.07
7255 7707 7.571983 GCCATGCAAGACACATAATAGTACATC 60.572 40.741 0.00 0.00 0.00 3.06
7256 7708 6.205464 GCCATGCAAGACACATAATAGTACAT 59.795 38.462 0.00 0.00 0.00 2.29
7257 7709 5.527214 GCCATGCAAGACACATAATAGTACA 59.473 40.000 0.00 0.00 0.00 2.90
7258 7710 5.527214 TGCCATGCAAGACACATAATAGTAC 59.473 40.000 0.00 0.00 34.76 2.73
7259 7711 5.679601 TGCCATGCAAGACACATAATAGTA 58.320 37.500 0.00 0.00 34.76 1.82
7260 7712 4.525996 TGCCATGCAAGACACATAATAGT 58.474 39.130 0.00 0.00 34.76 2.12
7261 7713 5.503662 TTGCCATGCAAGACACATAATAG 57.496 39.130 0.00 0.00 43.99 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.