Multiple sequence alignment - TraesCS5A01G431900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G431900 chr5A 100.000 5533 0 0 1 5533 616150319 616144787 0.000000e+00 10218.0
1 TraesCS5A01G431900 chr5A 92.713 247 17 1 3759 4005 85176525 85176280 6.820000e-94 355.0
2 TraesCS5A01G431900 chr5B 91.290 3008 190 35 815 3760 608209711 608206714 0.000000e+00 4037.0
3 TraesCS5A01G431900 chr5B 90.693 2901 194 34 918 3760 608353669 608350787 0.000000e+00 3792.0
4 TraesCS5A01G431900 chr5B 95.879 825 24 6 1 824 608211020 608210205 0.000000e+00 1327.0
5 TraesCS5A01G431900 chr5B 87.594 798 48 12 4766 5524 608348641 608347856 0.000000e+00 878.0
6 TraesCS5A01G431900 chr5B 93.982 565 25 3 4006 4570 608206713 608206158 0.000000e+00 846.0
7 TraesCS5A01G431900 chr5B 94.687 527 19 5 367 892 608354258 608353740 0.000000e+00 809.0
8 TraesCS5A01G431900 chr5B 88.428 579 35 11 4006 4570 608350786 608350226 0.000000e+00 669.0
9 TraesCS5A01G431900 chr5B 82.812 768 86 29 4595 5332 608206060 608205309 0.000000e+00 645.0
10 TraesCS5A01G431900 chr5B 95.300 383 17 1 1 382 608356299 608355917 1.700000e-169 606.0
11 TraesCS5A01G431900 chr5B 92.021 188 8 3 4564 4750 608349862 608349681 1.980000e-64 257.0
12 TraesCS5A01G431900 chr5B 82.353 102 18 0 5233 5334 90989316 90989417 7.630000e-14 89.8
13 TraesCS5A01G431900 chr5D 92.111 2193 118 18 1 2148 493128631 493126449 0.000000e+00 3040.0
14 TraesCS5A01G431900 chr5D 93.542 1533 75 8 2241 3760 493126448 493124927 0.000000e+00 2261.0
15 TraesCS5A01G431900 chr5D 88.710 992 58 23 4564 5524 493124281 493123313 0.000000e+00 1162.0
16 TraesCS5A01G431900 chr5D 88.754 578 32 9 4006 4570 493124926 493124369 0.000000e+00 676.0
17 TraesCS5A01G431900 chr7A 91.732 254 19 2 3755 4008 709991914 709991663 8.820000e-93 351.0
18 TraesCS5A01G431900 chr7A 92.339 248 15 2 3759 4006 715696734 715696491 3.170000e-92 350.0
19 TraesCS5A01G431900 chr7A 91.373 255 19 3 3759 4011 456614149 456614402 4.100000e-91 346.0
20 TraesCS5A01G431900 chr7A 74.138 464 88 21 4984 5430 704845886 704845438 4.430000e-36 163.0
21 TraesCS5A01G431900 chr3A 91.473 258 19 3 3751 4006 433993496 433993752 8.820000e-93 351.0
22 TraesCS5A01G431900 chr3A 77.744 328 49 12 5114 5430 527572861 527572547 4.400000e-41 180.0
23 TraesCS5A01G431900 chr4A 91.903 247 18 2 3759 4005 47647294 47647050 1.480000e-90 344.0
24 TraesCS5A01G431900 chr4A 75.665 263 47 10 5113 5371 607264585 607264834 1.260000e-21 115.0
25 TraesCS5A01G431900 chr2A 90.734 259 22 2 3750 4007 125351810 125351553 1.480000e-90 344.0
26 TraesCS5A01G431900 chr2A 89.850 266 23 3 3758 4021 410278840 410279103 6.870000e-89 339.0
27 TraesCS5A01G431900 chr2A 83.099 142 23 1 4977 5117 419476711 419476852 1.620000e-25 128.0
28 TraesCS5A01G431900 chr4D 91.566 249 20 1 3757 4005 503567019 503566772 5.310000e-90 342.0
29 TraesCS5A01G431900 chr1D 76.658 377 57 17 4977 5333 106292638 106293003 4.400000e-41 180.0
30 TraesCS5A01G431900 chr1D 76.164 365 60 14 4987 5334 325966545 325966191 3.430000e-37 167.0
31 TraesCS5A01G431900 chr6B 76.176 340 63 8 5002 5334 279006397 279006069 4.430000e-36 163.0
32 TraesCS5A01G431900 chr1B 75.862 348 58 22 5085 5415 32598027 32598365 2.670000e-33 154.0
33 TraesCS5A01G431900 chr7D 74.870 386 60 20 4977 5334 116602002 116602378 2.080000e-29 141.0
34 TraesCS5A01G431900 chrUn 74.803 381 60 19 4981 5334 46069771 46070142 7.470000e-29 139.0
35 TraesCS5A01G431900 chr6D 89.623 106 11 0 4986 5091 28678836 28678941 9.670000e-28 135.0
36 TraesCS5A01G431900 chr4B 81.006 179 26 5 5114 5292 661255924 661256094 9.670000e-28 135.0
37 TraesCS5A01G431900 chr3D 84.444 90 12 2 5151 5239 301888852 301888764 2.750000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G431900 chr5A 616144787 616150319 5532 True 10218.00 10218 100.000000 1 5533 1 chr5A.!!$R2 5532
1 TraesCS5A01G431900 chr5B 608205309 608211020 5711 True 1713.75 4037 90.990750 1 5332 4 chr5B.!!$R1 5331
2 TraesCS5A01G431900 chr5B 608347856 608356299 8443 True 1168.50 3792 91.453833 1 5524 6 chr5B.!!$R2 5523
3 TraesCS5A01G431900 chr5D 493123313 493128631 5318 True 1784.75 3040 90.779250 1 5524 4 chr5D.!!$R1 5523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 2230 0.107456 AGGTTGGTGAGTGCTGAGTG 59.893 55.0 0.00 0.00 0.00 3.51 F
1254 3479 0.106469 CCCATCTCCGACTCTGAGGA 60.106 60.0 9.85 0.00 34.93 3.71 F
2222 4492 0.033796 ATCTGGATGGGTGGTTGCTG 60.034 55.0 0.00 0.00 0.00 4.41 F
2315 4680 0.247460 GGCAAACATTCCTTCCCTGC 59.753 55.0 0.00 0.00 0.00 4.85 F
3438 5815 0.322816 TGCTTCAACAGATGGGAGGC 60.323 55.0 4.61 4.61 34.60 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2203 4473 0.033796 CAGCAACCACCCATCCAGAT 60.034 55.0 0.00 0.0 0.00 2.90 R
2302 4667 0.101759 CAATGCGCAGGGAAGGAATG 59.898 55.0 18.32 0.0 0.00 2.67 R
3233 5608 0.467384 TCTCAGCCAATAGCCTGAGC 59.533 55.0 11.67 0.0 45.47 4.26 R
4278 6669 0.307760 CTCCACGCCAGTTGTTGAAC 59.692 55.0 0.00 0.0 0.00 3.18 R
5081 8903 0.387929 GAATCCGGCGAGATACACCA 59.612 55.0 9.30 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 262 8.725148 CCTAGTATAACAAATCTTGATCCATGC 58.275 37.037 0.00 0.00 0.00 4.06
356 358 7.061789 CGATGGCAAGAACCTAAATAAAAACAC 59.938 37.037 0.00 0.00 0.00 3.32
394 2070 4.533919 AGAGATCTTGGCTTATCATCCG 57.466 45.455 0.00 0.00 0.00 4.18
417 2093 9.314321 TCCGTATAATAGCAAGAAAAGAAGAAG 57.686 33.333 0.00 0.00 0.00 2.85
418 2094 9.314321 CCGTATAATAGCAAGAAAAGAAGAAGA 57.686 33.333 0.00 0.00 0.00 2.87
552 2230 0.107456 AGGTTGGTGAGTGCTGAGTG 59.893 55.000 0.00 0.00 0.00 3.51
579 2257 4.460505 CCGTTGTTCTTCGGTTAATGAAC 58.539 43.478 0.00 0.00 41.58 3.18
654 2332 1.557099 ATCGGTGCACTGAAGGTCTA 58.443 50.000 31.03 7.97 34.49 2.59
655 2333 1.334160 TCGGTGCACTGAAGGTCTAA 58.666 50.000 26.02 0.09 0.00 2.10
656 2334 1.899814 TCGGTGCACTGAAGGTCTAAT 59.100 47.619 26.02 0.00 0.00 1.73
886 3066 0.248621 GCTCAATTCAAATCGCCCCG 60.249 55.000 0.00 0.00 0.00 5.73
888 3068 1.034838 TCAATTCAAATCGCCCCGGG 61.035 55.000 15.80 15.80 0.00 5.73
892 3072 0.547075 TTCAAATCGCCCCGGGATTA 59.453 50.000 26.32 6.57 42.82 1.75
893 3073 0.547075 TCAAATCGCCCCGGGATTAA 59.453 50.000 26.32 4.39 42.82 1.40
924 3149 0.319555 TGCTCGTGAAGGAAACGGAG 60.320 55.000 0.00 0.00 41.34 4.63
986 3211 1.355720 CCTCCTTCAATCCCCAACACT 59.644 52.381 0.00 0.00 0.00 3.55
990 3215 1.075374 CTTCAATCCCCAACACTCCCA 59.925 52.381 0.00 0.00 0.00 4.37
991 3216 1.381867 TCAATCCCCAACACTCCCAT 58.618 50.000 0.00 0.00 0.00 4.00
992 3217 1.715931 TCAATCCCCAACACTCCCATT 59.284 47.619 0.00 0.00 0.00 3.16
1001 3226 2.024176 ACACTCCCATTCGAAATCCG 57.976 50.000 0.00 0.00 40.25 4.18
1002 3227 1.278127 ACACTCCCATTCGAAATCCGT 59.722 47.619 0.00 0.00 39.75 4.69
1006 3231 2.538449 CTCCCATTCGAAATCCGTAACG 59.462 50.000 0.00 0.00 39.75 3.18
1008 3233 1.331680 CCATTCGAAATCCGTAACGCG 60.332 52.381 3.53 3.53 39.75 6.01
1195 3420 2.682136 TTCTGGATCGCCGACCCA 60.682 61.111 0.00 0.00 36.79 4.51
1252 3477 1.112315 CCCCCATCTCCGACTCTGAG 61.112 65.000 2.45 2.45 0.00 3.35
1253 3478 1.112315 CCCCATCTCCGACTCTGAGG 61.112 65.000 9.85 0.00 0.00 3.86
1254 3479 0.106469 CCCATCTCCGACTCTGAGGA 60.106 60.000 9.85 0.00 34.93 3.71
1265 3505 2.125912 CTGAGGACGCCGACTTGG 60.126 66.667 0.00 0.00 42.50 3.61
1309 3549 1.221021 GGAGGGCCGATTCGTTCTT 59.779 57.895 5.20 0.00 0.00 2.52
1320 3560 2.288961 TTCGTTCTTATCCGCACCTC 57.711 50.000 0.00 0.00 0.00 3.85
1321 3561 1.471119 TCGTTCTTATCCGCACCTCT 58.529 50.000 0.00 0.00 0.00 3.69
1350 3590 0.874607 GGCGACGGCGAGTATGAATT 60.875 55.000 18.90 0.00 41.24 2.17
1390 3630 4.755507 AGGTCCCCGTCCCTCGAC 62.756 72.222 0.00 0.00 42.86 4.20
1415 3655 0.250467 CCCGCTTCCCGATGATGATT 60.250 55.000 0.00 0.00 40.02 2.57
1416 3656 1.151668 CCGCTTCCCGATGATGATTC 58.848 55.000 0.00 0.00 40.02 2.52
1424 3664 0.234106 CGATGATGATTCGCTGCACC 59.766 55.000 0.00 0.00 0.00 5.01
1426 3666 0.462581 ATGATGATTCGCTGCACCGT 60.463 50.000 0.64 0.00 0.00 4.83
1428 3668 1.361668 GATGATTCGCTGCACCGTGT 61.362 55.000 0.64 0.00 0.00 4.49
1433 3679 2.709125 TTCGCTGCACCGTGTTAGCT 62.709 55.000 20.32 0.00 34.13 3.32
1453 3699 3.697747 TTCGGAATCGTGCCCCGT 61.698 61.111 0.00 0.00 43.40 5.28
1456 3702 4.404098 GGAATCGTGCCCCGTGGT 62.404 66.667 0.00 0.00 37.94 4.16
1482 3729 3.181440 GGGGACATTATCTCCTGATTGCA 60.181 47.826 0.00 0.00 45.95 4.08
1494 3741 0.249826 TGATTGCACTCTGTGACGCA 60.250 50.000 5.59 0.00 35.23 5.24
1514 3761 3.559171 GCAGTGACCTTGAAGGATTACCA 60.559 47.826 19.83 4.75 37.67 3.25
1518 3765 4.695928 GTGACCTTGAAGGATTACCAACTC 59.304 45.833 19.83 1.87 37.67 3.01
1530 3800 5.308237 GGATTACCAACTCCACATCTAGGAT 59.692 44.000 0.00 0.00 33.53 3.24
1571 3841 1.134491 GTCCTGGGGTCCTTACGATTG 60.134 57.143 0.00 0.00 0.00 2.67
1576 3846 0.746923 GGGTCCTTACGATTGCACCC 60.747 60.000 0.00 0.00 36.91 4.61
1584 3854 2.877691 GATTGCACCCGACAAGGC 59.122 61.111 0.00 0.00 39.21 4.35
1585 3855 2.676471 ATTGCACCCGACAAGGCC 60.676 61.111 0.00 0.00 39.21 5.19
1589 3859 2.034066 CACCCGACAAGGCCATGT 59.966 61.111 14.67 14.67 39.21 3.21
1628 3898 1.210155 GTGTGGGTCGATTTGCTGC 59.790 57.895 0.00 0.00 0.00 5.25
1629 3899 1.228094 TGTGGGTCGATTTGCTGCA 60.228 52.632 0.00 0.00 0.00 4.41
1637 3907 1.213537 GATTTGCTGCACGGCATGT 59.786 52.632 0.00 0.00 42.09 3.21
1675 3945 1.046204 AAGAACGAGAACCCCTTCGT 58.954 50.000 0.00 0.00 40.76 3.85
1721 3991 3.376546 GCCATTGCCTAGAAACAGAGAAG 59.623 47.826 0.00 0.00 0.00 2.85
1774 4044 0.828022 TCAGGCGTATTCGGGATGTT 59.172 50.000 0.00 0.00 37.56 2.71
2059 4329 3.334691 TGACATTTTGGTCGATGACTCC 58.665 45.455 0.00 0.00 40.72 3.85
2138 4408 1.276421 AGAACATGTACTCGGCTTGCT 59.724 47.619 0.00 0.00 0.00 3.91
2142 4412 0.833287 ATGTACTCGGCTTGCTCCAT 59.167 50.000 0.00 0.00 0.00 3.41
2149 4419 1.606531 GGCTTGCTCCATCCTGAGT 59.393 57.895 0.00 0.00 34.74 3.41
2159 4429 4.474394 CTCCATCCTGAGTACAGATGGTA 58.526 47.826 22.85 14.27 46.03 3.25
2160 4430 4.878968 TCCATCCTGAGTACAGATGGTAA 58.121 43.478 22.85 10.56 46.03 2.85
2161 4431 5.467738 TCCATCCTGAGTACAGATGGTAAT 58.532 41.667 22.85 0.00 46.03 1.89
2162 4432 5.305386 TCCATCCTGAGTACAGATGGTAATG 59.695 44.000 22.85 9.66 46.03 1.90
2163 4433 5.305386 CCATCCTGAGTACAGATGGTAATGA 59.695 44.000 18.76 0.00 46.03 2.57
2164 4434 6.013898 CCATCCTGAGTACAGATGGTAATGAT 60.014 42.308 18.76 0.00 46.03 2.45
2165 4435 7.179160 CCATCCTGAGTACAGATGGTAATGATA 59.821 40.741 18.76 0.00 46.03 2.15
2166 4436 8.756927 CATCCTGAGTACAGATGGTAATGATAT 58.243 37.037 0.00 0.00 46.03 1.63
2167 4437 8.354711 TCCTGAGTACAGATGGTAATGATATC 57.645 38.462 0.00 0.00 46.03 1.63
2168 4438 7.397476 TCCTGAGTACAGATGGTAATGATATCC 59.603 40.741 0.00 0.00 46.03 2.59
2169 4439 7.398618 CCTGAGTACAGATGGTAATGATATCCT 59.601 40.741 0.00 0.00 46.03 3.24
2170 4440 8.727100 TGAGTACAGATGGTAATGATATCCTT 57.273 34.615 0.00 0.00 32.72 3.36
2171 4441 9.159254 TGAGTACAGATGGTAATGATATCCTTT 57.841 33.333 0.00 0.00 32.72 3.11
2186 4456 8.561536 TGATATCCTTTACCTCAAGTTATCCA 57.438 34.615 0.00 0.00 0.00 3.41
2187 4457 8.651389 TGATATCCTTTACCTCAAGTTATCCAG 58.349 37.037 0.00 0.00 0.00 3.86
2188 4458 5.693769 TCCTTTACCTCAAGTTATCCAGG 57.306 43.478 0.00 0.00 0.00 4.45
2189 4459 5.347124 TCCTTTACCTCAAGTTATCCAGGA 58.653 41.667 0.00 0.00 0.00 3.86
2190 4460 5.788533 TCCTTTACCTCAAGTTATCCAGGAA 59.211 40.000 0.00 0.00 0.00 3.36
2191 4461 6.273730 TCCTTTACCTCAAGTTATCCAGGAAA 59.726 38.462 0.00 0.00 0.00 3.13
2192 4462 7.036863 TCCTTTACCTCAAGTTATCCAGGAAAT 60.037 37.037 0.00 0.00 0.00 2.17
2193 4463 7.067494 CCTTTACCTCAAGTTATCCAGGAAATG 59.933 40.741 0.00 0.00 0.00 2.32
2206 4476 4.333913 CAGGAAATGGAGTGATCGATCT 57.666 45.455 25.02 6.93 0.00 2.75
2207 4477 4.056740 CAGGAAATGGAGTGATCGATCTG 58.943 47.826 25.02 7.61 0.00 2.90
2208 4478 3.070734 AGGAAATGGAGTGATCGATCTGG 59.929 47.826 25.02 0.00 0.00 3.86
2209 4479 3.070159 GGAAATGGAGTGATCGATCTGGA 59.930 47.826 25.02 3.30 0.00 3.86
2210 4480 4.262808 GGAAATGGAGTGATCGATCTGGAT 60.263 45.833 25.02 9.13 0.00 3.41
2211 4481 3.957591 ATGGAGTGATCGATCTGGATG 57.042 47.619 25.02 0.00 0.00 3.51
2212 4482 1.966354 TGGAGTGATCGATCTGGATGG 59.034 52.381 25.02 0.00 0.00 3.51
2213 4483 1.274728 GGAGTGATCGATCTGGATGGG 59.725 57.143 25.02 0.00 0.00 4.00
2214 4484 1.967066 GAGTGATCGATCTGGATGGGT 59.033 52.381 25.02 2.14 0.00 4.51
2215 4485 1.690893 AGTGATCGATCTGGATGGGTG 59.309 52.381 25.02 0.00 0.00 4.61
2216 4486 1.051008 TGATCGATCTGGATGGGTGG 58.949 55.000 25.02 0.00 0.00 4.61
2217 4487 1.051812 GATCGATCTGGATGGGTGGT 58.948 55.000 18.29 0.00 0.00 4.16
2218 4488 1.417890 GATCGATCTGGATGGGTGGTT 59.582 52.381 18.29 0.00 0.00 3.67
2219 4489 0.541392 TCGATCTGGATGGGTGGTTG 59.459 55.000 0.00 0.00 0.00 3.77
2220 4490 1.097547 CGATCTGGATGGGTGGTTGC 61.098 60.000 0.00 0.00 0.00 4.17
2221 4491 0.257039 GATCTGGATGGGTGGTTGCT 59.743 55.000 0.00 0.00 0.00 3.91
2222 4492 0.033796 ATCTGGATGGGTGGTTGCTG 60.034 55.000 0.00 0.00 0.00 4.41
2223 4493 1.075482 CTGGATGGGTGGTTGCTGT 59.925 57.895 0.00 0.00 0.00 4.40
2224 4494 0.540365 CTGGATGGGTGGTTGCTGTT 60.540 55.000 0.00 0.00 0.00 3.16
2225 4495 0.827089 TGGATGGGTGGTTGCTGTTG 60.827 55.000 0.00 0.00 0.00 3.33
2226 4496 0.539438 GGATGGGTGGTTGCTGTTGA 60.539 55.000 0.00 0.00 0.00 3.18
2227 4497 0.598065 GATGGGTGGTTGCTGTTGAC 59.402 55.000 0.00 0.00 0.00 3.18
2228 4498 0.827507 ATGGGTGGTTGCTGTTGACC 60.828 55.000 0.00 0.00 36.45 4.02
2229 4499 1.152756 GGGTGGTTGCTGTTGACCT 60.153 57.895 0.00 0.00 36.86 3.85
2230 4500 0.755327 GGGTGGTTGCTGTTGACCTT 60.755 55.000 0.00 0.00 36.86 3.50
2231 4501 0.385390 GGTGGTTGCTGTTGACCTTG 59.615 55.000 0.00 0.00 36.86 3.61
2232 4502 1.388547 GTGGTTGCTGTTGACCTTGA 58.611 50.000 0.00 0.00 36.86 3.02
2233 4503 1.748493 GTGGTTGCTGTTGACCTTGAA 59.252 47.619 0.00 0.00 36.86 2.69
2234 4504 2.023673 TGGTTGCTGTTGACCTTGAAG 58.976 47.619 0.00 0.00 36.86 3.02
2235 4505 2.297701 GGTTGCTGTTGACCTTGAAGA 58.702 47.619 0.00 0.00 33.08 2.87
2236 4506 2.291741 GGTTGCTGTTGACCTTGAAGAG 59.708 50.000 0.00 0.00 33.08 2.85
2237 4507 3.206150 GTTGCTGTTGACCTTGAAGAGA 58.794 45.455 0.00 0.00 0.00 3.10
2238 4508 3.558931 TGCTGTTGACCTTGAAGAGAA 57.441 42.857 0.00 0.00 0.00 2.87
2239 4509 4.090761 TGCTGTTGACCTTGAAGAGAAT 57.909 40.909 0.00 0.00 0.00 2.40
2280 4645 2.573340 GGCGCACCCATTTGGAAG 59.427 61.111 10.83 0.00 37.39 3.46
2290 4655 5.699143 CACCCATTTGGAAGATATTCTCCT 58.301 41.667 0.00 0.00 37.39 3.69
2295 4660 6.433766 CATTTGGAAGATATTCTCCTTTCGC 58.566 40.000 0.00 0.00 0.00 4.70
2297 4662 3.060602 GGAAGATATTCTCCTTTCGCGG 58.939 50.000 6.13 0.00 0.00 6.46
2302 4667 0.521735 ATTCTCCTTTCGCGGCAAAC 59.478 50.000 6.13 0.00 0.00 2.93
2315 4680 0.247460 GGCAAACATTCCTTCCCTGC 59.753 55.000 0.00 0.00 0.00 4.85
2416 4782 1.000717 GCTACGCACAATTTGGTTGGT 60.001 47.619 0.78 0.00 42.28 3.67
2457 4823 1.557832 ACCCTTTTATGCTCCACGCTA 59.442 47.619 0.00 0.00 40.11 4.26
2508 4875 8.279970 AGCTACATATGATACTCTCTGTGATC 57.720 38.462 10.38 0.00 0.00 2.92
2586 4954 9.748708 CATGTTAATCTTGTATAAATTGTGGGG 57.251 33.333 0.00 0.00 0.00 4.96
2587 4955 8.887264 TGTTAATCTTGTATAAATTGTGGGGT 57.113 30.769 0.00 0.00 0.00 4.95
2588 4956 9.315363 TGTTAATCTTGTATAAATTGTGGGGTT 57.685 29.630 0.00 0.00 0.00 4.11
2804 5176 2.493278 CCCATCCGAGTCTGCAAAAATT 59.507 45.455 0.00 0.00 0.00 1.82
2874 5246 9.440773 CTATGGCATTGCTTATGAGTTTATCTA 57.559 33.333 4.78 0.00 36.26 1.98
2878 5250 8.663911 GGCATTGCTTATGAGTTTATCTATCTC 58.336 37.037 8.82 0.00 36.26 2.75
2907 5279 5.477984 AGGCATTAAAGTCTCAGCAATTCAA 59.522 36.000 0.00 0.00 0.00 2.69
3092 5466 0.875059 CGTCCAAGGCAGGTTTCTTC 59.125 55.000 0.00 0.00 0.00 2.87
3233 5608 8.356657 TCTTCCATATAACTGGTTTTGTTGTTG 58.643 33.333 0.00 0.00 37.57 3.33
3314 5690 3.539604 GAATGTTCATAGCTCACAGGCT 58.460 45.455 0.00 0.00 45.29 4.58
3359 5735 5.822519 GGTATGCTGAATCCAGTATGTTTCA 59.177 40.000 6.33 0.00 43.91 2.69
3395 5772 8.856103 TGTCATAGACCAAGATTAATACGATGA 58.144 33.333 0.00 0.00 0.00 2.92
3430 5807 1.955778 CCACAACCATGCTTCAACAGA 59.044 47.619 0.00 0.00 0.00 3.41
3438 5815 0.322816 TGCTTCAACAGATGGGAGGC 60.323 55.000 4.61 4.61 34.60 4.70
3529 5906 4.701765 TGTTTCCCATGTGTCCATTTTTG 58.298 39.130 0.00 0.00 0.00 2.44
3544 5926 7.281774 TGTCCATTTTTGCATACAACAACATTT 59.718 29.630 0.00 0.00 34.87 2.32
3614 5996 1.898574 GACCCTGCAACCCTGTGTG 60.899 63.158 0.00 0.00 0.00 3.82
3644 6026 1.450211 CCCCTGCCCCTAACATACG 59.550 63.158 0.00 0.00 0.00 3.06
3769 6151 9.261180 TGTGAAGCTTATGATACTAGTAATTGC 57.739 33.333 6.70 6.20 0.00 3.56
3770 6152 8.428536 GTGAAGCTTATGATACTAGTAATTGCG 58.571 37.037 6.70 0.00 0.00 4.85
3771 6153 6.952935 AGCTTATGATACTAGTAATTGCGC 57.047 37.500 6.70 0.00 0.00 6.09
3772 6154 6.455647 AGCTTATGATACTAGTAATTGCGCA 58.544 36.000 5.66 5.66 0.00 6.09
3773 6155 6.366332 AGCTTATGATACTAGTAATTGCGCAC 59.634 38.462 11.12 0.00 0.00 5.34
3774 6156 6.667621 GCTTATGATACTAGTAATTGCGCACG 60.668 42.308 11.12 0.00 0.00 5.34
3775 6157 4.295857 TGATACTAGTAATTGCGCACGA 57.704 40.909 11.12 0.00 0.00 4.35
3776 6158 4.866921 TGATACTAGTAATTGCGCACGAT 58.133 39.130 11.12 0.00 0.00 3.73
3777 6159 4.679654 TGATACTAGTAATTGCGCACGATG 59.320 41.667 11.12 0.00 0.00 3.84
3778 6160 1.593006 ACTAGTAATTGCGCACGATGC 59.407 47.619 11.12 2.46 40.69 3.91
3779 6161 1.592543 CTAGTAATTGCGCACGATGCA 59.407 47.619 11.12 0.00 45.36 3.96
3783 6165 2.504462 TTGCGCACGATGCAATGC 60.504 55.556 11.12 10.14 46.62 3.56
3784 6166 3.264866 TTGCGCACGATGCAATGCA 62.265 52.632 11.12 11.44 46.62 3.96
3833 6215 8.521170 AATTGCATGCTGATATTAGATATGCT 57.479 30.769 24.30 12.15 38.98 3.79
3834 6216 9.623000 AATTGCATGCTGATATTAGATATGCTA 57.377 29.630 24.30 20.51 38.98 3.49
3835 6217 9.794719 ATTGCATGCTGATATTAGATATGCTAT 57.205 29.630 24.30 21.31 38.98 2.97
3836 6218 9.623000 TTGCATGCTGATATTAGATATGCTATT 57.377 29.630 24.30 0.00 38.98 1.73
3855 6237 8.574251 TGCTATTATTTGTGTGTTAATCCTGT 57.426 30.769 0.00 0.00 0.00 4.00
3856 6238 8.458052 TGCTATTATTTGTGTGTTAATCCTGTG 58.542 33.333 0.00 0.00 0.00 3.66
3857 6239 8.673711 GCTATTATTTGTGTGTTAATCCTGTGA 58.326 33.333 0.00 0.00 0.00 3.58
3874 6256 7.658525 TCCTGTGATTAATGCAATATTTGGT 57.341 32.000 0.00 0.00 0.00 3.67
3875 6257 8.759481 TCCTGTGATTAATGCAATATTTGGTA 57.241 30.769 0.00 0.00 0.00 3.25
3876 6258 9.365906 TCCTGTGATTAATGCAATATTTGGTAT 57.634 29.630 0.00 0.00 0.00 2.73
3877 6259 9.414295 CCTGTGATTAATGCAATATTTGGTATG 57.586 33.333 0.00 0.00 0.00 2.39
3912 6294 3.352906 CGTTAAACACGTTTAAAGCTCGC 59.647 43.478 14.86 3.48 43.89 5.03
3913 6295 2.394545 AAACACGTTTAAAGCTCGCC 57.605 45.000 0.00 0.00 0.00 5.54
3914 6296 1.301423 AACACGTTTAAAGCTCGCCA 58.699 45.000 0.00 0.00 0.00 5.69
3915 6297 1.519408 ACACGTTTAAAGCTCGCCAT 58.481 45.000 0.00 0.00 0.00 4.40
3916 6298 1.877443 ACACGTTTAAAGCTCGCCATT 59.123 42.857 0.00 0.00 0.00 3.16
3917 6299 2.241722 CACGTTTAAAGCTCGCCATTG 58.758 47.619 0.00 0.00 0.00 2.82
3918 6300 2.095969 CACGTTTAAAGCTCGCCATTGA 60.096 45.455 0.00 0.00 0.00 2.57
3919 6301 2.550606 ACGTTTAAAGCTCGCCATTGAA 59.449 40.909 0.00 0.00 0.00 2.69
3920 6302 3.163594 CGTTTAAAGCTCGCCATTGAAG 58.836 45.455 0.00 0.00 0.00 3.02
3921 6303 2.917343 GTTTAAAGCTCGCCATTGAAGC 59.083 45.455 0.00 0.00 0.00 3.86
3922 6304 1.819928 TAAAGCTCGCCATTGAAGCA 58.180 45.000 0.00 0.00 0.00 3.91
3923 6305 0.524862 AAAGCTCGCCATTGAAGCAG 59.475 50.000 0.00 0.00 0.00 4.24
3924 6306 0.607489 AAGCTCGCCATTGAAGCAGT 60.607 50.000 0.00 0.00 0.00 4.40
3925 6307 1.023513 AGCTCGCCATTGAAGCAGTC 61.024 55.000 7.92 0.00 0.00 3.51
3926 6308 1.023513 GCTCGCCATTGAAGCAGTCT 61.024 55.000 0.00 0.00 0.00 3.24
3927 6309 1.740380 GCTCGCCATTGAAGCAGTCTA 60.740 52.381 0.00 0.00 0.00 2.59
3928 6310 2.200067 CTCGCCATTGAAGCAGTCTAG 58.800 52.381 0.00 0.00 0.00 2.43
3929 6311 1.134699 TCGCCATTGAAGCAGTCTAGG 60.135 52.381 0.00 0.00 0.00 3.02
3930 6312 1.406069 CGCCATTGAAGCAGTCTAGGT 60.406 52.381 0.00 0.00 0.00 3.08
3931 6313 2.284190 GCCATTGAAGCAGTCTAGGTC 58.716 52.381 0.00 0.00 0.00 3.85
3932 6314 2.544685 CCATTGAAGCAGTCTAGGTCG 58.455 52.381 0.00 0.00 0.00 4.79
3933 6315 2.093973 CCATTGAAGCAGTCTAGGTCGT 60.094 50.000 0.00 0.00 0.00 4.34
3934 6316 3.589988 CATTGAAGCAGTCTAGGTCGTT 58.410 45.455 0.00 0.00 0.00 3.85
3935 6317 2.724977 TGAAGCAGTCTAGGTCGTTG 57.275 50.000 0.00 0.00 0.00 4.10
3936 6318 1.272490 TGAAGCAGTCTAGGTCGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
3937 6319 1.544691 GAAGCAGTCTAGGTCGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
3938 6320 1.853963 AGCAGTCTAGGTCGTTGGAT 58.146 50.000 0.00 0.00 0.00 3.41
3939 6321 2.180276 AGCAGTCTAGGTCGTTGGATT 58.820 47.619 0.00 0.00 0.00 3.01
3940 6322 3.362706 AGCAGTCTAGGTCGTTGGATTA 58.637 45.455 0.00 0.00 0.00 1.75
3941 6323 3.767673 AGCAGTCTAGGTCGTTGGATTAA 59.232 43.478 0.00 0.00 0.00 1.40
3942 6324 3.864003 GCAGTCTAGGTCGTTGGATTAAC 59.136 47.826 0.00 0.00 35.90 2.01
3943 6325 4.381718 GCAGTCTAGGTCGTTGGATTAACT 60.382 45.833 0.00 0.00 37.13 2.24
3944 6326 5.721232 CAGTCTAGGTCGTTGGATTAACTT 58.279 41.667 0.00 0.00 37.13 2.66
3945 6327 6.626623 GCAGTCTAGGTCGTTGGATTAACTTA 60.627 42.308 0.00 0.00 37.13 2.24
3946 6328 6.973474 CAGTCTAGGTCGTTGGATTAACTTAG 59.027 42.308 0.00 0.00 37.13 2.18
3947 6329 6.662663 AGTCTAGGTCGTTGGATTAACTTAGT 59.337 38.462 0.00 0.00 37.13 2.24
3948 6330 7.178097 AGTCTAGGTCGTTGGATTAACTTAGTT 59.822 37.037 2.32 2.32 37.13 2.24
3949 6331 7.487509 GTCTAGGTCGTTGGATTAACTTAGTTC 59.512 40.741 0.00 0.00 37.13 3.01
3950 6332 5.166398 AGGTCGTTGGATTAACTTAGTTCG 58.834 41.667 0.00 0.00 37.13 3.95
3951 6333 5.047802 AGGTCGTTGGATTAACTTAGTTCGA 60.048 40.000 0.00 0.00 37.13 3.71
3952 6334 5.809051 GGTCGTTGGATTAACTTAGTTCGAT 59.191 40.000 0.00 0.00 37.13 3.59
3953 6335 6.237755 GGTCGTTGGATTAACTTAGTTCGATG 60.238 42.308 0.00 0.00 37.13 3.84
3954 6336 5.808540 TCGTTGGATTAACTTAGTTCGATGG 59.191 40.000 0.00 0.00 37.13 3.51
3955 6337 5.579511 CGTTGGATTAACTTAGTTCGATGGT 59.420 40.000 0.00 0.00 37.13 3.55
3956 6338 6.237755 CGTTGGATTAACTTAGTTCGATGGTC 60.238 42.308 0.00 0.00 37.13 4.02
3957 6339 5.345702 TGGATTAACTTAGTTCGATGGTCG 58.654 41.667 0.00 0.00 42.10 4.79
3958 6340 8.314857 GTTGGATTAACTTAGTTCGATGGTCGA 61.315 40.741 0.00 0.00 40.55 4.20
3965 6347 4.553668 TCGATGGTCGAGATCGGT 57.446 55.556 20.85 0.00 44.82 4.69
3966 6348 2.789842 TCGATGGTCGAGATCGGTT 58.210 52.632 20.85 0.00 44.82 4.44
3967 6349 0.380733 TCGATGGTCGAGATCGGTTG 59.619 55.000 20.85 0.62 44.82 3.77
3968 6350 0.595053 CGATGGTCGAGATCGGTTGG 60.595 60.000 15.79 0.00 43.74 3.77
3969 6351 0.744874 GATGGTCGAGATCGGTTGGA 59.255 55.000 1.91 0.00 40.29 3.53
3970 6352 1.341531 GATGGTCGAGATCGGTTGGAT 59.658 52.381 1.91 0.00 40.29 3.41
3976 6358 4.464262 GATCGGTTGGATCTGCCC 57.536 61.111 0.00 0.00 46.66 5.36
3977 6359 1.227973 GATCGGTTGGATCTGCCCC 60.228 63.158 0.00 0.00 46.66 5.80
3978 6360 1.694169 ATCGGTTGGATCTGCCCCT 60.694 57.895 0.00 0.00 34.97 4.79
3979 6361 1.281925 ATCGGTTGGATCTGCCCCTT 61.282 55.000 0.00 0.00 34.97 3.95
3980 6362 1.000896 CGGTTGGATCTGCCCCTTT 60.001 57.895 0.00 0.00 34.97 3.11
3981 6363 1.315257 CGGTTGGATCTGCCCCTTTG 61.315 60.000 0.00 0.00 34.97 2.77
3982 6364 0.972471 GGTTGGATCTGCCCCTTTGG 60.972 60.000 0.00 0.00 34.97 3.28
3998 6380 6.867519 CCCTTTGGGTCTTTTTATATTGGT 57.132 37.500 0.00 0.00 38.25 3.67
3999 6381 7.964666 CCCTTTGGGTCTTTTTATATTGGTA 57.035 36.000 0.00 0.00 38.25 3.25
4000 6382 8.547481 CCCTTTGGGTCTTTTTATATTGGTAT 57.453 34.615 0.00 0.00 38.25 2.73
4001 6383 9.649316 CCCTTTGGGTCTTTTTATATTGGTATA 57.351 33.333 0.00 0.00 38.25 1.47
4182 6570 8.147704 TCATCGTCATATAATAGGTTGCAAAGA 58.852 33.333 0.00 0.00 0.00 2.52
4208 6596 9.772973 ATGGAATTATTTATGTCTGCTACGTTA 57.227 29.630 0.00 0.00 0.00 3.18
4229 6620 6.367969 CGTTATACTGCTTTTGTCCTGTTACT 59.632 38.462 0.00 0.00 0.00 2.24
4278 6669 1.228367 GCAGGCACCCCATCCATAG 60.228 63.158 0.00 0.00 0.00 2.23
4333 6724 2.519063 CACAGCAACACCCTGCCA 60.519 61.111 0.00 0.00 43.73 4.92
4410 6801 5.596836 TTGGTTACCGTCCGATTTACTAT 57.403 39.130 0.00 0.00 0.00 2.12
4486 6877 5.534654 CACCCTTACTGTCTGAAAAATTCCA 59.465 40.000 0.00 0.00 0.00 3.53
4670 7447 2.356535 CCTATTCAGTTGCAGCTTCCCT 60.357 50.000 0.00 0.00 0.00 4.20
4722 7501 4.288531 CGGTAAGACATCGAGGTATGTTC 58.711 47.826 1.11 0.00 40.17 3.18
4751 7530 6.040842 ACTGAAATTTAGATGTGGTTGCACTT 59.959 34.615 0.00 0.00 0.00 3.16
4752 7531 6.215121 TGAAATTTAGATGTGGTTGCACTTG 58.785 36.000 0.00 0.00 0.00 3.16
4753 7532 3.641437 TTTAGATGTGGTTGCACTTGC 57.359 42.857 0.00 0.00 42.50 4.01
4763 7542 4.645921 GCACTTGCACGGTTGGCC 62.646 66.667 0.00 0.00 41.59 5.36
4764 7543 2.906897 CACTTGCACGGTTGGCCT 60.907 61.111 3.32 0.00 0.00 5.19
4806 8610 7.513371 AGCCTCACATAGTTAGATACTGTAC 57.487 40.000 0.00 0.00 37.73 2.90
4808 8612 7.013464 AGCCTCACATAGTTAGATACTGTACAC 59.987 40.741 0.00 0.00 37.73 2.90
4814 8618 8.910944 ACATAGTTAGATACTGTACACCGAAAT 58.089 33.333 0.00 0.00 37.73 2.17
4833 8639 5.629079 AAATGTAAGTAAAGCTGTCCTGC 57.371 39.130 0.00 0.00 0.00 4.85
4886 8692 3.019564 ACAGCAGCTGTTTTTCTGAAGT 58.980 40.909 23.11 3.17 42.59 3.01
4891 8697 4.675146 GCAGCTGTTTTTCTGAAGTGTGAA 60.675 41.667 16.64 0.00 32.26 3.18
4893 8699 4.702131 AGCTGTTTTTCTGAAGTGTGAACT 59.298 37.500 0.00 0.00 0.00 3.01
4897 8703 7.156876 TGTTTTTCTGAAGTGTGAACTCATT 57.843 32.000 0.00 0.00 0.00 2.57
5028 8850 4.222847 GTTCTCCCCGCCTAGCCG 62.223 72.222 0.00 0.00 0.00 5.52
5081 8903 1.271054 GGCATGTGAAGGTGTGTCTCT 60.271 52.381 0.00 0.00 0.00 3.10
5132 8980 9.299276 GTATTTTTCTTCGTTCGTCTAAGTTTC 57.701 33.333 0.00 0.00 0.00 2.78
5190 9038 5.198207 TCTCTTCATCGGTGATGGTTACTA 58.802 41.667 11.29 0.00 40.15 1.82
5241 9096 1.850441 CACGACGACTTGACGACTTTT 59.150 47.619 0.00 0.00 39.09 2.27
5293 9148 1.606601 CGATGAGGGAGGGGCGATA 60.607 63.158 0.00 0.00 0.00 2.92
5334 9204 1.281899 GCTCCAGTGATTGTAGTCGC 58.718 55.000 0.00 0.00 0.00 5.19
5336 9206 2.099263 GCTCCAGTGATTGTAGTCGCTA 59.901 50.000 0.00 0.00 36.86 4.26
5422 9305 9.794685 GATGAATAGATTGAAAGTTCTTTTCCC 57.205 33.333 0.00 0.00 43.72 3.97
5423 9306 8.122472 TGAATAGATTGAAAGTTCTTTTCCCC 57.878 34.615 0.00 0.00 43.72 4.81
5467 9360 0.887933 GTTGTGGCCTTGTGGGTATG 59.112 55.000 3.32 0.00 37.43 2.39
5481 9374 3.579586 GTGGGTATGTTACATCCGGGATA 59.420 47.826 9.68 0.00 0.00 2.59
5524 9417 0.175073 GGTACTCCTGTTGCCTACCG 59.825 60.000 0.00 0.00 0.00 4.02
5525 9418 0.175073 GTACTCCTGTTGCCTACCGG 59.825 60.000 0.00 0.00 32.74 5.28
5526 9419 0.040058 TACTCCTGTTGCCTACCGGA 59.960 55.000 9.46 0.00 37.76 5.14
5527 9420 0.834687 ACTCCTGTTGCCTACCGGAA 60.835 55.000 9.46 0.00 39.34 4.30
5528 9421 0.108138 CTCCTGTTGCCTACCGGAAG 60.108 60.000 9.46 0.00 39.34 3.46
5529 9422 0.543410 TCCTGTTGCCTACCGGAAGA 60.543 55.000 9.46 0.00 37.22 2.87
5530 9423 0.541863 CCTGTTGCCTACCGGAAGAT 59.458 55.000 9.46 0.00 33.22 2.40
5531 9424 1.760613 CCTGTTGCCTACCGGAAGATA 59.239 52.381 9.46 0.00 33.22 1.98
5532 9425 2.368875 CCTGTTGCCTACCGGAAGATAT 59.631 50.000 9.46 0.00 33.22 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.912250 GCAATGGACATGACAAAAATAGAGTAG 59.088 37.037 0.00 0.00 0.00 2.57
9 10 7.392953 TGCAATGGACATGACAAAAATAGAGTA 59.607 33.333 0.00 0.00 0.00 2.59
70 71 1.134995 GCCTTGGAAAATGCTAGGTGC 60.135 52.381 0.00 0.00 43.25 5.01
101 103 6.883756 TGAGTGTTTTGGCATGATTCATACTA 59.116 34.615 0.00 0.00 0.00 1.82
171 173 4.158786 TGGGAGAAATGCCAAGATTTCAA 58.841 39.130 9.21 0.00 42.50 2.69
173 175 4.806640 TTGGGAGAAATGCCAAGATTTC 57.193 40.909 0.00 0.00 41.02 2.17
260 262 3.042887 GTGCTTGCTTTTAGGTTGTTCG 58.957 45.455 0.00 0.00 0.00 3.95
417 2093 7.514573 AATTGGAAGTTACACGTTTTTGTTC 57.485 32.000 0.00 0.00 0.00 3.18
418 2094 7.385478 ACAAATTGGAAGTTACACGTTTTTGTT 59.615 29.630 9.95 0.00 31.60 2.83
419 2095 6.869388 ACAAATTGGAAGTTACACGTTTTTGT 59.131 30.769 9.95 9.95 0.00 2.83
420 2096 7.284518 ACAAATTGGAAGTTACACGTTTTTG 57.715 32.000 0.00 9.06 0.00 2.44
421 2097 7.892778 AACAAATTGGAAGTTACACGTTTTT 57.107 28.000 0.00 0.00 0.00 1.94
579 2257 2.667418 CCTCACCACTGGCCTCAG 59.333 66.667 3.32 0.00 46.10 3.35
784 2462 9.865321 CAAAAACCATCATAATCTGTGAGAAAT 57.135 29.630 0.00 0.00 0.00 2.17
886 3066 5.519206 CGAGCAACTTGTAGTAGTTAATCCC 59.481 44.000 0.00 0.00 36.24 3.85
888 3068 6.805271 TCACGAGCAACTTGTAGTAGTTAATC 59.195 38.462 0.00 0.00 36.24 1.75
892 3072 4.579454 TCACGAGCAACTTGTAGTAGTT 57.421 40.909 0.00 0.00 38.87 2.24
893 3073 4.547532 CTTCACGAGCAACTTGTAGTAGT 58.452 43.478 0.00 0.00 0.00 2.73
924 3149 1.487300 GGTTACCTCTCCACTCCTCC 58.513 60.000 0.00 0.00 0.00 4.30
986 3211 2.542597 CGTTACGGATTTCGAATGGGA 58.457 47.619 0.00 0.00 42.43 4.37
1195 3420 2.283388 TAGAAGGACACCGCCGGT 60.283 61.111 1.02 1.02 35.62 5.28
1239 3464 1.745864 GCGTCCTCAGAGTCGGAGA 60.746 63.158 20.37 5.31 34.24 3.71
1249 3474 2.154798 CTTCCAAGTCGGCGTCCTCA 62.155 60.000 6.85 0.00 33.14 3.86
1252 3477 1.289800 GAACTTCCAAGTCGGCGTCC 61.290 60.000 6.85 0.00 38.57 4.79
1253 3478 0.599204 TGAACTTCCAAGTCGGCGTC 60.599 55.000 6.85 0.00 38.57 5.19
1254 3479 0.600255 CTGAACTTCCAAGTCGGCGT 60.600 55.000 6.85 0.00 38.57 5.68
1265 3505 1.941812 CCACGTGTGGCTGAACTTC 59.058 57.895 15.65 0.00 44.73 3.01
1309 3549 2.356135 GAAGCAAAAGAGGTGCGGATA 58.644 47.619 0.00 0.00 46.86 2.59
1320 3560 2.173382 CGTCGCCGGAAGCAAAAG 59.827 61.111 5.05 0.00 44.04 2.27
1350 3590 1.480954 GGTCGCCCTTGTAGATGAAGA 59.519 52.381 0.00 0.00 0.00 2.87
1415 3655 1.868987 TAGCTAACACGGTGCAGCGA 61.869 55.000 41.29 20.32 39.04 4.93
1416 3656 1.413767 CTAGCTAACACGGTGCAGCG 61.414 60.000 34.46 34.46 39.04 5.18
1424 3664 2.782192 CGATTCCGAACTAGCTAACACG 59.218 50.000 0.00 0.70 38.22 4.49
1426 3666 3.766151 CACGATTCCGAACTAGCTAACA 58.234 45.455 0.00 0.00 39.50 2.41
1428 3668 2.480759 GGCACGATTCCGAACTAGCTAA 60.481 50.000 0.00 0.00 39.50 3.09
1433 3679 1.518774 GGGGCACGATTCCGAACTA 59.481 57.895 0.00 0.00 39.50 2.24
1453 3699 1.760613 GAGATAATGTCCCCGTCACCA 59.239 52.381 0.00 0.00 0.00 4.17
1456 3702 2.039418 CAGGAGATAATGTCCCCGTCA 58.961 52.381 0.00 0.00 34.21 4.35
1462 3708 4.712476 AGTGCAATCAGGAGATAATGTCC 58.288 43.478 0.00 0.00 33.08 4.02
1494 3741 4.351111 AGTTGGTAATCCTTCAAGGTCACT 59.649 41.667 2.50 0.00 36.53 3.41
1496 3743 4.263331 GGAGTTGGTAATCCTTCAAGGTCA 60.263 45.833 2.50 0.00 36.53 4.02
1514 3761 4.624913 TCCTTGATCCTAGATGTGGAGTT 58.375 43.478 0.00 0.00 36.99 3.01
1518 3765 2.971330 AGCTCCTTGATCCTAGATGTGG 59.029 50.000 0.00 0.00 0.00 4.17
1530 3800 1.376466 GGGTTGAGCAGCTCCTTGA 59.624 57.895 20.16 0.00 0.00 3.02
1571 3841 3.443045 CATGGCCTTGTCGGGTGC 61.443 66.667 10.48 0.00 0.00 5.01
1576 3846 1.503542 GAGCAACATGGCCTTGTCG 59.496 57.895 23.35 14.69 0.00 4.35
1584 3854 1.442526 GCCATCTCGGAGCAACATGG 61.443 60.000 15.58 15.58 37.63 3.66
1585 3855 1.769098 CGCCATCTCGGAGCAACATG 61.769 60.000 0.00 0.00 36.56 3.21
1589 3859 2.125552 CACGCCATCTCGGAGCAA 60.126 61.111 0.00 0.00 38.34 3.91
1628 3898 1.008652 CACACACCAACATGCCGTG 60.009 57.895 0.00 0.00 0.00 4.94
1629 3899 1.153066 TCACACACCAACATGCCGT 60.153 52.632 0.00 0.00 0.00 5.68
1637 3907 5.029807 TCTTGAAGTATGTCACACACCAA 57.970 39.130 0.00 0.00 0.00 3.67
1675 3945 2.179547 CAATGGGATGTAGCGCGCA 61.180 57.895 35.10 16.82 0.00 6.09
1721 3991 5.576774 CCGGGATTAACTGCTTCAAAATTTC 59.423 40.000 0.00 0.00 0.00 2.17
1774 4044 1.775385 TCAGACCATCGACATAGGCA 58.225 50.000 0.00 0.00 0.00 4.75
1885 4155 6.369340 GCATGATCAAGTCAGAATCATAGAGG 59.631 42.308 0.00 0.00 40.92 3.69
1921 4191 4.986783 TGGGTATGTTGTCCACATGTTTA 58.013 39.130 0.00 0.00 46.37 2.01
2059 4329 1.123756 GACAGTAAGACCGAAAACGCG 59.876 52.381 3.53 3.53 0.00 6.01
2070 4340 2.334977 TCCTTTGGCCAGACAGTAAGA 58.665 47.619 13.15 0.00 0.00 2.10
2138 4408 3.404869 ACCATCTGTACTCAGGATGGA 57.595 47.619 27.45 0.00 43.60 3.41
2142 4412 7.397476 GGATATCATTACCATCTGTACTCAGGA 59.603 40.741 4.83 0.00 41.59 3.86
2160 4430 9.170890 TGGATAACTTGAGGTAAAGGATATCAT 57.829 33.333 4.83 0.00 34.75 2.45
2161 4431 8.561536 TGGATAACTTGAGGTAAAGGATATCA 57.438 34.615 4.83 0.00 34.75 2.15
2162 4432 8.097662 CCTGGATAACTTGAGGTAAAGGATATC 58.902 40.741 0.00 0.00 33.60 1.63
2163 4433 7.794683 TCCTGGATAACTTGAGGTAAAGGATAT 59.205 37.037 0.00 0.00 0.00 1.63
2164 4434 7.136885 TCCTGGATAACTTGAGGTAAAGGATA 58.863 38.462 0.00 0.00 0.00 2.59
2165 4435 5.970640 TCCTGGATAACTTGAGGTAAAGGAT 59.029 40.000 0.00 0.00 0.00 3.24
2166 4436 5.347124 TCCTGGATAACTTGAGGTAAAGGA 58.653 41.667 0.00 2.93 0.00 3.36
2167 4437 5.693769 TCCTGGATAACTTGAGGTAAAGG 57.306 43.478 0.00 0.00 0.00 3.11
2168 4438 7.989826 CATTTCCTGGATAACTTGAGGTAAAG 58.010 38.462 0.00 0.00 0.00 1.85
2169 4439 7.938140 CATTTCCTGGATAACTTGAGGTAAA 57.062 36.000 0.00 0.00 0.00 2.01
2185 4455 4.056740 CAGATCGATCACTCCATTTCCTG 58.943 47.826 26.47 8.16 0.00 3.86
2186 4456 3.070734 CCAGATCGATCACTCCATTTCCT 59.929 47.826 26.47 0.00 0.00 3.36
2187 4457 3.070159 TCCAGATCGATCACTCCATTTCC 59.930 47.826 26.47 0.00 0.00 3.13
2188 4458 4.327982 TCCAGATCGATCACTCCATTTC 57.672 45.455 26.47 0.00 0.00 2.17
2189 4459 4.504514 CCATCCAGATCGATCACTCCATTT 60.505 45.833 26.47 0.78 0.00 2.32
2190 4460 3.007723 CCATCCAGATCGATCACTCCATT 59.992 47.826 26.47 1.56 0.00 3.16
2191 4461 2.566279 CCATCCAGATCGATCACTCCAT 59.434 50.000 26.47 8.54 0.00 3.41
2192 4462 1.966354 CCATCCAGATCGATCACTCCA 59.034 52.381 26.47 6.60 0.00 3.86
2193 4463 1.274728 CCCATCCAGATCGATCACTCC 59.725 57.143 26.47 0.16 0.00 3.85
2194 4464 1.967066 ACCCATCCAGATCGATCACTC 59.033 52.381 26.47 1.47 0.00 3.51
2195 4465 1.690893 CACCCATCCAGATCGATCACT 59.309 52.381 26.47 4.68 0.00 3.41
2196 4466 1.270518 CCACCCATCCAGATCGATCAC 60.271 57.143 26.47 1.76 0.00 3.06
2197 4467 1.051008 CCACCCATCCAGATCGATCA 58.949 55.000 26.47 7.29 0.00 2.92
2198 4468 1.051812 ACCACCCATCCAGATCGATC 58.948 55.000 17.91 17.91 0.00 3.69
2199 4469 1.141657 CAACCACCCATCCAGATCGAT 59.858 52.381 0.00 0.00 0.00 3.59
2200 4470 0.541392 CAACCACCCATCCAGATCGA 59.459 55.000 0.00 0.00 0.00 3.59
2201 4471 1.097547 GCAACCACCCATCCAGATCG 61.098 60.000 0.00 0.00 0.00 3.69
2202 4472 0.257039 AGCAACCACCCATCCAGATC 59.743 55.000 0.00 0.00 0.00 2.75
2203 4473 0.033796 CAGCAACCACCCATCCAGAT 60.034 55.000 0.00 0.00 0.00 2.90
2204 4474 1.379916 CAGCAACCACCCATCCAGA 59.620 57.895 0.00 0.00 0.00 3.86
2205 4475 0.540365 AACAGCAACCACCCATCCAG 60.540 55.000 0.00 0.00 0.00 3.86
2206 4476 0.827089 CAACAGCAACCACCCATCCA 60.827 55.000 0.00 0.00 0.00 3.41
2207 4477 0.539438 TCAACAGCAACCACCCATCC 60.539 55.000 0.00 0.00 0.00 3.51
2208 4478 0.598065 GTCAACAGCAACCACCCATC 59.402 55.000 0.00 0.00 0.00 3.51
2209 4479 0.827507 GGTCAACAGCAACCACCCAT 60.828 55.000 0.00 0.00 35.53 4.00
2210 4480 1.454847 GGTCAACAGCAACCACCCA 60.455 57.895 0.00 0.00 35.53 4.51
2211 4481 0.755327 AAGGTCAACAGCAACCACCC 60.755 55.000 0.00 0.00 38.06 4.61
2212 4482 0.385390 CAAGGTCAACAGCAACCACC 59.615 55.000 0.00 0.00 38.06 4.61
2213 4483 1.388547 TCAAGGTCAACAGCAACCAC 58.611 50.000 0.00 0.00 38.06 4.16
2214 4484 2.023673 CTTCAAGGTCAACAGCAACCA 58.976 47.619 0.00 0.00 38.06 3.67
2215 4485 2.291741 CTCTTCAAGGTCAACAGCAACC 59.708 50.000 0.00 0.00 35.69 3.77
2216 4486 3.206150 TCTCTTCAAGGTCAACAGCAAC 58.794 45.455 0.00 0.00 0.00 4.17
2217 4487 3.558931 TCTCTTCAAGGTCAACAGCAA 57.441 42.857 0.00 0.00 0.00 3.91
2218 4488 3.558931 TTCTCTTCAAGGTCAACAGCA 57.441 42.857 0.00 0.00 0.00 4.41
2219 4489 4.997395 TGTATTCTCTTCAAGGTCAACAGC 59.003 41.667 0.00 0.00 0.00 4.40
2220 4490 6.146837 CAGTGTATTCTCTTCAAGGTCAACAG 59.853 42.308 0.00 0.00 0.00 3.16
2221 4491 5.991606 CAGTGTATTCTCTTCAAGGTCAACA 59.008 40.000 0.00 0.00 0.00 3.33
2222 4492 6.223852 TCAGTGTATTCTCTTCAAGGTCAAC 58.776 40.000 0.00 0.00 0.00 3.18
2223 4493 6.419484 TCAGTGTATTCTCTTCAAGGTCAA 57.581 37.500 0.00 0.00 0.00 3.18
2224 4494 6.419484 TTCAGTGTATTCTCTTCAAGGTCA 57.581 37.500 0.00 0.00 0.00 4.02
2225 4495 6.931840 ACTTTCAGTGTATTCTCTTCAAGGTC 59.068 38.462 0.00 0.00 0.00 3.85
2226 4496 6.708054 CACTTTCAGTGTATTCTCTTCAAGGT 59.292 38.462 0.00 0.00 41.19 3.50
2227 4497 6.148480 CCACTTTCAGTGTATTCTCTTCAAGG 59.852 42.308 3.30 0.00 44.50 3.61
2228 4498 6.931281 TCCACTTTCAGTGTATTCTCTTCAAG 59.069 38.462 3.30 0.00 44.50 3.02
2229 4499 6.826668 TCCACTTTCAGTGTATTCTCTTCAA 58.173 36.000 3.30 0.00 44.50 2.69
2230 4500 6.419484 TCCACTTTCAGTGTATTCTCTTCA 57.581 37.500 3.30 0.00 44.50 3.02
2231 4501 6.128418 GCTTCCACTTTCAGTGTATTCTCTTC 60.128 42.308 3.30 0.00 44.50 2.87
2232 4502 5.703130 GCTTCCACTTTCAGTGTATTCTCTT 59.297 40.000 3.30 0.00 44.50 2.85
2233 4503 5.221722 TGCTTCCACTTTCAGTGTATTCTCT 60.222 40.000 3.30 0.00 44.50 3.10
2234 4504 4.997395 TGCTTCCACTTTCAGTGTATTCTC 59.003 41.667 3.30 0.00 44.50 2.87
2235 4505 4.757149 GTGCTTCCACTTTCAGTGTATTCT 59.243 41.667 3.30 0.00 44.50 2.40
2236 4506 4.083271 GGTGCTTCCACTTTCAGTGTATTC 60.083 45.833 3.30 0.00 44.50 1.75
2237 4507 3.821033 GGTGCTTCCACTTTCAGTGTATT 59.179 43.478 3.30 0.00 44.50 1.89
2238 4508 3.073062 AGGTGCTTCCACTTTCAGTGTAT 59.927 43.478 3.30 0.00 44.50 2.29
2239 4509 2.438021 AGGTGCTTCCACTTTCAGTGTA 59.562 45.455 3.30 0.00 44.50 2.90
2272 4637 5.237344 CGCGAAAGGAGAATATCTTCCAAAT 59.763 40.000 0.00 0.00 31.27 2.32
2280 4645 1.865865 TGCCGCGAAAGGAGAATATC 58.134 50.000 8.23 0.00 0.00 1.63
2290 4655 0.671251 AAGGAATGTTTGCCGCGAAA 59.329 45.000 8.23 0.00 0.00 3.46
2295 4660 0.527565 CAGGGAAGGAATGTTTGCCG 59.472 55.000 0.00 0.00 40.56 5.69
2297 4662 0.109132 CGCAGGGAAGGAATGTTTGC 60.109 55.000 0.00 0.00 0.00 3.68
2302 4667 0.101759 CAATGCGCAGGGAAGGAATG 59.898 55.000 18.32 0.00 0.00 2.67
2416 4782 7.290061 AGGGTAGCAGCAAATAAGATAATTCA 58.710 34.615 0.00 0.00 0.00 2.57
2457 4823 8.052748 TCTAAACACCCTAACAAAGATATGCAT 58.947 33.333 3.79 3.79 0.00 3.96
2508 4875 6.719370 AGATAGCCCTATTTCTCACAGTAGAG 59.281 42.308 0.00 0.00 36.97 2.43
2780 5152 1.488705 TTGCAGACTCGGATGGGGTT 61.489 55.000 0.00 0.00 0.00 4.11
2874 5246 7.187824 TGAGACTTTAATGCCTACAAGAGAT 57.812 36.000 0.00 0.00 0.00 2.75
2878 5250 4.937620 TGCTGAGACTTTAATGCCTACAAG 59.062 41.667 0.00 0.00 0.00 3.16
2907 5279 2.546494 GCTGCTTGTCTGTGCGGTT 61.546 57.895 0.00 0.00 37.82 4.44
2998 5372 4.545208 AGAGAGGAAACTTTAGCAGGTC 57.455 45.455 0.00 0.00 44.43 3.85
3002 5376 5.036117 ACACAAGAGAGGAAACTTTAGCA 57.964 39.130 0.00 0.00 44.43 3.49
3092 5466 6.279513 AGAACAGAGTTCTCATAACAGAGG 57.720 41.667 6.58 0.00 36.30 3.69
3233 5608 0.467384 TCTCAGCCAATAGCCTGAGC 59.533 55.000 11.67 0.00 45.47 4.26
3314 5690 8.685427 CATACCATATTGTTTTGATCAGGACAA 58.315 33.333 21.04 21.04 36.55 3.18
3359 5735 7.437713 TCTTGGTCTATGACACATAGGAAAT 57.562 36.000 15.64 0.00 33.68 2.17
3395 5772 1.067295 TGTGGAGGCTGGAAATGACT 58.933 50.000 0.00 0.00 0.00 3.41
3449 5826 0.532862 GGGCATGATGAGTACCCACG 60.533 60.000 0.00 0.00 40.52 4.94
3644 6026 5.629849 AGCGAATGATAATTGTCGTAGCTAC 59.370 40.000 18.81 14.19 35.93 3.58
3653 6035 3.016031 TGCCACAGCGAATGATAATTGT 58.984 40.909 0.00 0.00 44.31 2.71
3807 6189 9.623000 AGCATATCTAATATCAGCATGCAATTA 57.377 29.630 21.98 15.46 36.73 1.40
3808 6190 8.521170 AGCATATCTAATATCAGCATGCAATT 57.479 30.769 21.98 15.17 36.73 2.32
3809 6191 9.794719 ATAGCATATCTAATATCAGCATGCAAT 57.205 29.630 21.98 15.14 36.73 3.56
3810 6192 9.623000 AATAGCATATCTAATATCAGCATGCAA 57.377 29.630 21.98 7.97 36.73 4.08
3829 6211 9.189156 ACAGGATTAACACACAAATAATAGCAT 57.811 29.630 0.00 0.00 0.00 3.79
3830 6212 8.458052 CACAGGATTAACACACAAATAATAGCA 58.542 33.333 0.00 0.00 0.00 3.49
3831 6213 8.673711 TCACAGGATTAACACACAAATAATAGC 58.326 33.333 0.00 0.00 0.00 2.97
3848 6230 8.707449 ACCAAATATTGCATTAATCACAGGATT 58.293 29.630 0.00 0.00 45.50 3.01
3849 6231 8.253867 ACCAAATATTGCATTAATCACAGGAT 57.746 30.769 0.00 0.00 34.43 3.24
3850 6232 7.658525 ACCAAATATTGCATTAATCACAGGA 57.341 32.000 0.00 0.00 0.00 3.86
3851 6233 9.414295 CATACCAAATATTGCATTAATCACAGG 57.586 33.333 0.00 0.00 0.00 4.00
3891 6273 3.660813 GGCGAGCTTTAAACGTGTTTAAC 59.339 43.478 15.45 7.36 42.61 2.01
3892 6274 3.311871 TGGCGAGCTTTAAACGTGTTTAA 59.688 39.130 12.58 12.58 41.61 1.52
3893 6275 2.871022 TGGCGAGCTTTAAACGTGTTTA 59.129 40.909 1.18 1.18 34.23 2.01
3894 6276 1.671845 TGGCGAGCTTTAAACGTGTTT 59.328 42.857 3.21 3.21 36.63 2.83
3895 6277 1.301423 TGGCGAGCTTTAAACGTGTT 58.699 45.000 0.00 0.00 0.00 3.32
3896 6278 1.519408 ATGGCGAGCTTTAAACGTGT 58.481 45.000 0.00 0.00 0.00 4.49
3897 6279 2.095969 TCAATGGCGAGCTTTAAACGTG 60.096 45.455 0.00 0.00 0.00 4.49
3898 6280 2.147958 TCAATGGCGAGCTTTAAACGT 58.852 42.857 0.00 0.00 0.00 3.99
3899 6281 2.892373 TCAATGGCGAGCTTTAAACG 57.108 45.000 0.00 0.00 0.00 3.60
3900 6282 2.917343 GCTTCAATGGCGAGCTTTAAAC 59.083 45.455 0.00 0.00 33.72 2.01
3901 6283 2.556189 TGCTTCAATGGCGAGCTTTAAA 59.444 40.909 0.00 0.00 37.32 1.52
3902 6284 2.158559 TGCTTCAATGGCGAGCTTTAA 58.841 42.857 0.00 0.00 37.32 1.52
3903 6285 1.739466 CTGCTTCAATGGCGAGCTTTA 59.261 47.619 0.00 0.00 37.32 1.85
3904 6286 0.524862 CTGCTTCAATGGCGAGCTTT 59.475 50.000 0.00 0.00 37.32 3.51
3905 6287 0.607489 ACTGCTTCAATGGCGAGCTT 60.607 50.000 0.00 0.00 37.32 3.74
3906 6288 1.002868 ACTGCTTCAATGGCGAGCT 60.003 52.632 0.00 0.00 37.32 4.09
3907 6289 1.023513 AGACTGCTTCAATGGCGAGC 61.024 55.000 0.00 0.00 36.95 5.03
3908 6290 2.200067 CTAGACTGCTTCAATGGCGAG 58.800 52.381 0.00 0.00 0.00 5.03
3909 6291 1.134699 CCTAGACTGCTTCAATGGCGA 60.135 52.381 0.00 0.00 0.00 5.54
3910 6292 1.293924 CCTAGACTGCTTCAATGGCG 58.706 55.000 0.00 0.00 0.00 5.69
3911 6293 2.284190 GACCTAGACTGCTTCAATGGC 58.716 52.381 0.00 0.00 0.00 4.40
3912 6294 2.093973 ACGACCTAGACTGCTTCAATGG 60.094 50.000 0.00 0.00 0.00 3.16
3913 6295 3.238108 ACGACCTAGACTGCTTCAATG 57.762 47.619 0.00 0.00 0.00 2.82
3914 6296 3.589988 CAACGACCTAGACTGCTTCAAT 58.410 45.455 0.00 0.00 0.00 2.57
3915 6297 2.288825 CCAACGACCTAGACTGCTTCAA 60.289 50.000 0.00 0.00 0.00 2.69
3916 6298 1.272490 CCAACGACCTAGACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
3917 6299 1.544691 TCCAACGACCTAGACTGCTTC 59.455 52.381 0.00 0.00 0.00 3.86
3918 6300 1.629043 TCCAACGACCTAGACTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
3919 6301 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
3920 6302 2.674796 AATCCAACGACCTAGACTGC 57.325 50.000 0.00 0.00 0.00 4.40
3921 6303 5.326200 AGTTAATCCAACGACCTAGACTG 57.674 43.478 0.00 0.00 42.35 3.51
3922 6304 5.997384 AAGTTAATCCAACGACCTAGACT 57.003 39.130 0.00 0.00 42.35 3.24
3923 6305 6.861144 ACTAAGTTAATCCAACGACCTAGAC 58.139 40.000 0.00 0.00 42.35 2.59
3924 6306 7.472334 AACTAAGTTAATCCAACGACCTAGA 57.528 36.000 0.00 0.00 42.35 2.43
3925 6307 6.471519 CGAACTAAGTTAATCCAACGACCTAG 59.528 42.308 0.00 0.00 42.35 3.02
3926 6308 6.150976 TCGAACTAAGTTAATCCAACGACCTA 59.849 38.462 0.00 0.00 42.35 3.08
3927 6309 5.047802 TCGAACTAAGTTAATCCAACGACCT 60.048 40.000 0.00 0.00 42.35 3.85
3928 6310 5.163513 TCGAACTAAGTTAATCCAACGACC 58.836 41.667 0.00 0.00 42.35 4.79
3929 6311 6.237755 CCATCGAACTAAGTTAATCCAACGAC 60.238 42.308 0.00 0.00 42.35 4.34
3930 6312 5.808540 CCATCGAACTAAGTTAATCCAACGA 59.191 40.000 0.00 0.00 42.35 3.85
3931 6313 5.579511 ACCATCGAACTAAGTTAATCCAACG 59.420 40.000 0.00 0.00 42.35 4.10
3932 6314 6.237755 CGACCATCGAACTAAGTTAATCCAAC 60.238 42.308 0.00 0.00 43.74 3.77
3933 6315 5.808540 CGACCATCGAACTAAGTTAATCCAA 59.191 40.000 0.00 0.00 43.74 3.53
3934 6316 5.125900 TCGACCATCGAACTAAGTTAATCCA 59.874 40.000 0.00 0.00 46.90 3.41
3935 6317 5.585390 TCGACCATCGAACTAAGTTAATCC 58.415 41.667 0.00 0.00 46.90 3.01
3949 6331 0.595053 CCAACCGATCTCGACCATCG 60.595 60.000 12.99 12.99 42.36 3.84
3950 6332 0.744874 TCCAACCGATCTCGACCATC 59.255 55.000 0.22 0.00 43.02 3.51
3951 6333 1.341531 GATCCAACCGATCTCGACCAT 59.658 52.381 0.22 0.00 43.65 3.55
3952 6334 0.744874 GATCCAACCGATCTCGACCA 59.255 55.000 0.22 0.00 43.65 4.02
3953 6335 3.571741 GATCCAACCGATCTCGACC 57.428 57.895 0.22 0.00 43.65 4.79
3959 6341 1.227973 GGGGCAGATCCAACCGATC 60.228 63.158 0.00 0.00 46.86 3.69
3960 6342 1.281925 AAGGGGCAGATCCAACCGAT 61.282 55.000 0.00 0.00 36.21 4.18
3961 6343 1.497309 AAAGGGGCAGATCCAACCGA 61.497 55.000 0.00 0.00 36.21 4.69
3962 6344 1.000896 AAAGGGGCAGATCCAACCG 60.001 57.895 0.00 0.00 36.21 4.44
3963 6345 0.972471 CCAAAGGGGCAGATCCAACC 60.972 60.000 0.00 0.00 36.21 3.77
3964 6346 2.583472 CCAAAGGGGCAGATCCAAC 58.417 57.895 0.00 0.00 36.21 3.77
3996 6378 5.026121 TGAGGACATGGGATCATCTATACC 58.974 45.833 0.00 0.00 39.39 2.73
3997 6379 6.805016 ATGAGGACATGGGATCATCTATAC 57.195 41.667 0.00 0.00 35.21 1.47
3998 6380 7.458806 TCAAATGAGGACATGGGATCATCTATA 59.541 37.037 8.64 0.00 36.79 1.31
3999 6381 6.273965 TCAAATGAGGACATGGGATCATCTAT 59.726 38.462 8.64 0.00 36.79 1.98
4000 6382 5.608015 TCAAATGAGGACATGGGATCATCTA 59.392 40.000 8.64 0.00 36.79 1.98
4001 6383 4.414514 TCAAATGAGGACATGGGATCATCT 59.585 41.667 8.64 0.00 36.79 2.90
4002 6384 4.518211 GTCAAATGAGGACATGGGATCATC 59.482 45.833 8.64 0.47 36.79 2.92
4003 6385 4.467769 GTCAAATGAGGACATGGGATCAT 58.532 43.478 0.00 0.17 36.79 2.45
4004 6386 3.371917 GGTCAAATGAGGACATGGGATCA 60.372 47.826 0.00 0.00 37.00 2.92
4154 6542 7.652300 TGCAACCTATTATATGACGATGAAC 57.348 36.000 0.00 0.00 0.00 3.18
4160 6548 7.387673 TCCATCTTTGCAACCTATTATATGACG 59.612 37.037 0.00 0.00 0.00 4.35
4182 6570 8.677148 AACGTAGCAGACATAAATAATTCCAT 57.323 30.769 0.00 0.00 0.00 3.41
4208 6596 7.221450 TGTAAGTAACAGGACAAAAGCAGTAT 58.779 34.615 0.00 0.00 33.01 2.12
4278 6669 0.307760 CTCCACGCCAGTTGTTGAAC 59.692 55.000 0.00 0.00 0.00 3.18
4333 6724 6.157211 GCGCACCATAGTAATATGAGTTACT 58.843 40.000 11.67 4.89 44.66 2.24
4386 6777 4.835678 AGTAAATCGGACGGTAACCAAAT 58.164 39.130 0.00 0.00 0.00 2.32
4387 6778 4.270245 AGTAAATCGGACGGTAACCAAA 57.730 40.909 0.00 0.00 0.00 3.28
4388 6779 3.959535 AGTAAATCGGACGGTAACCAA 57.040 42.857 0.00 0.00 0.00 3.67
4389 6780 4.644234 TCATAGTAAATCGGACGGTAACCA 59.356 41.667 0.00 0.00 0.00 3.67
4390 6781 5.186996 TCATAGTAAATCGGACGGTAACC 57.813 43.478 0.00 0.00 0.00 2.85
4391 6782 7.327032 GGTAATCATAGTAAATCGGACGGTAAC 59.673 40.741 0.00 0.00 0.00 2.50
4410 6801 5.581126 AACGTGGTTAGTATCGGTAATCA 57.419 39.130 0.00 0.00 0.00 2.57
4690 7469 1.174078 TGTCTTACCGCACGAGGTCA 61.174 55.000 0.00 0.00 44.68 4.02
4722 7501 6.146021 GCAACCACATCTAAATTTCAGTTTGG 59.854 38.462 0.00 0.29 0.00 3.28
4751 7530 0.538516 ACATAAAGGCCAACCGTGCA 60.539 50.000 5.01 0.00 42.76 4.57
4752 7531 1.131693 GTACATAAAGGCCAACCGTGC 59.868 52.381 5.01 0.00 42.76 5.34
4753 7532 1.395608 CGTACATAAAGGCCAACCGTG 59.604 52.381 5.01 0.00 42.76 4.94
4754 7533 1.275856 TCGTACATAAAGGCCAACCGT 59.724 47.619 5.01 0.00 42.76 4.83
4755 7534 2.012937 TCGTACATAAAGGCCAACCG 57.987 50.000 5.01 0.00 42.76 4.44
4756 7535 4.769859 TTTTCGTACATAAAGGCCAACC 57.230 40.909 5.01 0.00 0.00 3.77
4757 7536 9.659830 CTAATATTTTCGTACATAAAGGCCAAC 57.340 33.333 5.01 0.00 0.00 3.77
4760 7539 7.174426 AGGCTAATATTTTCGTACATAAAGGCC 59.826 37.037 0.00 0.00 0.00 5.19
4761 7540 8.095937 AGGCTAATATTTTCGTACATAAAGGC 57.904 34.615 0.00 0.00 0.00 4.35
4762 7541 9.268268 TGAGGCTAATATTTTCGTACATAAAGG 57.732 33.333 0.00 0.00 0.00 3.11
4764 7543 9.602568 TGTGAGGCTAATATTTTCGTACATAAA 57.397 29.630 0.00 0.00 0.00 1.40
4806 8610 5.390567 GGACAGCTTTACTTACATTTCGGTG 60.391 44.000 0.00 0.00 0.00 4.94
4808 8612 4.935808 AGGACAGCTTTACTTACATTTCGG 59.064 41.667 0.00 0.00 0.00 4.30
4814 8618 3.762407 TGCAGGACAGCTTTACTTACA 57.238 42.857 0.00 0.00 34.99 2.41
4886 8692 2.677836 GCGCCATTCTAATGAGTTCACA 59.322 45.455 0.00 0.00 38.70 3.58
4891 8697 3.877508 GGTTAAGCGCCATTCTAATGAGT 59.122 43.478 2.29 0.00 38.70 3.41
4893 8699 4.127171 GAGGTTAAGCGCCATTCTAATGA 58.873 43.478 2.29 0.00 38.70 2.57
4897 8703 3.906720 AAGAGGTTAAGCGCCATTCTA 57.093 42.857 2.29 0.00 0.00 2.10
5044 8866 1.090052 GCCCTCCAACGATGCTACAC 61.090 60.000 0.00 0.00 0.00 2.90
5056 8878 1.379916 CACCTTCACATGCCCTCCA 59.620 57.895 0.00 0.00 0.00 3.86
5081 8903 0.387929 GAATCCGGCGAGATACACCA 59.612 55.000 9.30 0.00 0.00 4.17
5132 8980 5.106157 GGAAGGATCCAACATGTAAACACAG 60.106 44.000 15.82 0.00 45.79 3.66
5190 9038 1.028330 CATGACCAGCACGCCAGAAT 61.028 55.000 0.00 0.00 0.00 2.40
5334 9204 4.560919 GCCCGTACACCTTCTATCCAATAG 60.561 50.000 0.00 0.00 0.00 1.73
5336 9206 2.104281 GCCCGTACACCTTCTATCCAAT 59.896 50.000 0.00 0.00 0.00 3.16
5467 9360 8.098912 AGGTACAATAAATATCCCGGATGTAAC 58.901 37.037 10.45 6.15 31.56 2.50
5481 9374 8.126385 ACCCTGGGAAATAAAGGTACAATAAAT 58.874 33.333 22.23 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.