Multiple sequence alignment - TraesCS5A01G431800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G431800 chr5A 100.000 3260 0 0 1 3260 616063785 616067044 0.000000e+00 6021.0
1 TraesCS5A01G431800 chr5A 93.410 1654 90 6 766 2403 616042848 616044498 0.000000e+00 2433.0
2 TraesCS5A01G431800 chr5A 82.554 1112 169 15 1169 2266 616365787 616366887 0.000000e+00 955.0
3 TraesCS5A01G431800 chr5A 78.364 1137 204 28 1169 2266 616155183 616154050 0.000000e+00 699.0
4 TraesCS5A01G431800 chr5A 92.905 296 18 2 2371 2666 615864484 615864776 8.360000e-116 427.0
5 TraesCS5A01G431800 chr5A 92.857 294 18 2 2373 2666 616044427 616044717 1.080000e-114 424.0
6 TraesCS5A01G431800 chr5A 90.000 150 6 7 2663 2811 615864909 615865050 5.550000e-43 185.0
7 TraesCS5A01G431800 chr5D 95.359 2629 96 7 637 3260 493115754 493118361 0.000000e+00 4156.0
8 TraesCS5A01G431800 chr5D 83.708 1111 164 13 1169 2266 493286757 493287863 0.000000e+00 1033.0
9 TraesCS5A01G431800 chr5B 95.531 2506 96 7 753 3254 608195245 608197738 0.000000e+00 3993.0
10 TraesCS5A01G431800 chr5B 92.500 2120 103 22 700 2808 608337407 608339481 0.000000e+00 2983.0
11 TraesCS5A01G431800 chr5B 90.300 1732 97 26 706 2403 608082697 608084391 0.000000e+00 2202.0
12 TraesCS5A01G431800 chr5B 82.633 1094 171 16 1174 2262 608644510 608645589 0.000000e+00 950.0
13 TraesCS5A01G431800 chr5B 82.200 1118 174 18 1169 2266 608654668 608655780 0.000000e+00 939.0
14 TraesCS5A01G431800 chr5B 78.222 1125 195 32 1182 2266 608215561 608214447 0.000000e+00 675.0
15 TraesCS5A01G431800 chr5B 93.537 294 16 2 2373 2666 608084320 608084610 5.000000e-118 435.0
16 TraesCS5A01G431800 chr5B 93.909 197 11 1 700 896 608140531 608140726 2.460000e-76 296.0
17 TraesCS5A01G431800 chr5B 92.500 200 14 1 700 899 608311149 608311347 5.320000e-73 285.0
18 TraesCS5A01G431800 chr5B 89.333 150 8 4 2663 2811 608084773 608084915 7.190000e-42 182.0
19 TraesCS5A01G431800 chr5B 89.333 150 8 4 2663 2811 608085021 608085163 7.190000e-42 182.0
20 TraesCS5A01G431800 chr2B 86.667 150 12 4 2663 2811 220521074 220521216 3.370000e-35 159.0
21 TraesCS5A01G431800 chr1B 86.755 151 10 6 2663 2811 393120163 393120305 3.370000e-35 159.0
22 TraesCS5A01G431800 chr6A 97.222 36 1 0 2663 2698 35340350 35340315 9.770000e-06 62.1
23 TraesCS5A01G431800 chr6B 79.070 86 15 2 505 590 694409790 694409872 4.540000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G431800 chr5A 616063785 616067044 3259 False 6021.00 6021 100.00000 1 3260 1 chr5A.!!$F1 3259
1 TraesCS5A01G431800 chr5A 616042848 616044717 1869 False 1428.50 2433 93.13350 766 2666 2 chr5A.!!$F4 1900
2 TraesCS5A01G431800 chr5A 616365787 616366887 1100 False 955.00 955 82.55400 1169 2266 1 chr5A.!!$F2 1097
3 TraesCS5A01G431800 chr5A 616154050 616155183 1133 True 699.00 699 78.36400 1169 2266 1 chr5A.!!$R1 1097
4 TraesCS5A01G431800 chr5A 615864484 615865050 566 False 306.00 427 91.45250 2371 2811 2 chr5A.!!$F3 440
5 TraesCS5A01G431800 chr5D 493115754 493118361 2607 False 4156.00 4156 95.35900 637 3260 1 chr5D.!!$F1 2623
6 TraesCS5A01G431800 chr5D 493286757 493287863 1106 False 1033.00 1033 83.70800 1169 2266 1 chr5D.!!$F2 1097
7 TraesCS5A01G431800 chr5B 608195245 608197738 2493 False 3993.00 3993 95.53100 753 3254 1 chr5B.!!$F2 2501
8 TraesCS5A01G431800 chr5B 608337407 608339481 2074 False 2983.00 2983 92.50000 700 2808 1 chr5B.!!$F4 2108
9 TraesCS5A01G431800 chr5B 608644510 608645589 1079 False 950.00 950 82.63300 1174 2262 1 chr5B.!!$F5 1088
10 TraesCS5A01G431800 chr5B 608654668 608655780 1112 False 939.00 939 82.20000 1169 2266 1 chr5B.!!$F6 1097
11 TraesCS5A01G431800 chr5B 608082697 608085163 2466 False 750.25 2202 90.62575 706 2811 4 chr5B.!!$F7 2105
12 TraesCS5A01G431800 chr5B 608214447 608215561 1114 True 675.00 675 78.22200 1182 2266 1 chr5B.!!$R1 1084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 383 0.027586 GGCGTGCGTATGGATGTTTC 59.972 55.0 0.0 0.0 0.00 2.78 F
383 384 0.027586 GCGTGCGTATGGATGTTTCC 59.972 55.0 0.0 0.0 42.94 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1632 0.034089 TCTCAGGAGAGCGGTCATCA 60.034 55.000 18.15 0.0 41.81 3.07 R
2274 2416 2.030007 CAGCATTCGTCAAACACCCATT 60.030 45.455 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.824305 AACCTCTCTTGATGTTTAACCATG 57.176 37.500 0.00 0.00 28.91 3.66
24 25 5.256474 ACCTCTCTTGATGTTTAACCATGG 58.744 41.667 11.19 11.19 0.00 3.66
25 26 5.222130 ACCTCTCTTGATGTTTAACCATGGT 60.222 40.000 13.00 13.00 0.00 3.55
26 27 6.012858 ACCTCTCTTGATGTTTAACCATGGTA 60.013 38.462 20.12 1.36 0.00 3.25
27 28 6.540189 CCTCTCTTGATGTTTAACCATGGTAG 59.460 42.308 20.12 8.55 0.00 3.18
28 29 6.414732 TCTCTTGATGTTTAACCATGGTAGG 58.585 40.000 20.12 0.00 0.00 3.18
29 30 6.012858 TCTCTTGATGTTTAACCATGGTAGGT 60.013 38.462 20.12 5.12 45.91 3.08
38 39 2.604139 ACCATGGTAGGTTTTTGGGTG 58.396 47.619 18.10 0.00 39.34 4.61
39 40 1.899142 CCATGGTAGGTTTTTGGGTGG 59.101 52.381 2.57 0.00 0.00 4.61
40 41 2.604139 CATGGTAGGTTTTTGGGTGGT 58.396 47.619 0.00 0.00 0.00 4.16
41 42 2.850695 TGGTAGGTTTTTGGGTGGTT 57.149 45.000 0.00 0.00 0.00 3.67
42 43 2.389715 TGGTAGGTTTTTGGGTGGTTG 58.610 47.619 0.00 0.00 0.00 3.77
43 44 2.024273 TGGTAGGTTTTTGGGTGGTTGA 60.024 45.455 0.00 0.00 0.00 3.18
44 45 3.236047 GGTAGGTTTTTGGGTGGTTGAT 58.764 45.455 0.00 0.00 0.00 2.57
45 46 3.644265 GGTAGGTTTTTGGGTGGTTGATT 59.356 43.478 0.00 0.00 0.00 2.57
46 47 4.833938 GGTAGGTTTTTGGGTGGTTGATTA 59.166 41.667 0.00 0.00 0.00 1.75
47 48 5.304871 GGTAGGTTTTTGGGTGGTTGATTAA 59.695 40.000 0.00 0.00 0.00 1.40
48 49 5.545063 AGGTTTTTGGGTGGTTGATTAAG 57.455 39.130 0.00 0.00 0.00 1.85
49 50 4.346709 AGGTTTTTGGGTGGTTGATTAAGG 59.653 41.667 0.00 0.00 0.00 2.69
50 51 4.504165 GGTTTTTGGGTGGTTGATTAAGGG 60.504 45.833 0.00 0.00 0.00 3.95
51 52 2.614134 TTGGGTGGTTGATTAAGGGG 57.386 50.000 0.00 0.00 0.00 4.79
52 53 0.707616 TGGGTGGTTGATTAAGGGGG 59.292 55.000 0.00 0.00 0.00 5.40
53 54 1.004436 GGGTGGTTGATTAAGGGGGA 58.996 55.000 0.00 0.00 0.00 4.81
54 55 1.063942 GGGTGGTTGATTAAGGGGGAG 60.064 57.143 0.00 0.00 0.00 4.30
55 56 1.920351 GGTGGTTGATTAAGGGGGAGA 59.080 52.381 0.00 0.00 0.00 3.71
56 57 2.092375 GGTGGTTGATTAAGGGGGAGAG 60.092 54.545 0.00 0.00 0.00 3.20
57 58 2.092375 GTGGTTGATTAAGGGGGAGAGG 60.092 54.545 0.00 0.00 0.00 3.69
58 59 1.495148 GGTTGATTAAGGGGGAGAGGG 59.505 57.143 0.00 0.00 0.00 4.30
59 60 2.206223 GTTGATTAAGGGGGAGAGGGT 58.794 52.381 0.00 0.00 0.00 4.34
60 61 2.581246 GTTGATTAAGGGGGAGAGGGTT 59.419 50.000 0.00 0.00 0.00 4.11
61 62 2.205342 TGATTAAGGGGGAGAGGGTTG 58.795 52.381 0.00 0.00 0.00 3.77
62 63 2.206223 GATTAAGGGGGAGAGGGTTGT 58.794 52.381 0.00 0.00 0.00 3.32
63 64 3.246572 TGATTAAGGGGGAGAGGGTTGTA 60.247 47.826 0.00 0.00 0.00 2.41
64 65 2.259014 TAAGGGGGAGAGGGTTGTAC 57.741 55.000 0.00 0.00 0.00 2.90
65 66 0.195096 AAGGGGGAGAGGGTTGTACA 59.805 55.000 0.00 0.00 0.00 2.90
66 67 0.195096 AGGGGGAGAGGGTTGTACAA 59.805 55.000 3.59 3.59 0.00 2.41
67 68 0.618981 GGGGGAGAGGGTTGTACAAG 59.381 60.000 8.98 0.00 0.00 3.16
68 69 1.652947 GGGGAGAGGGTTGTACAAGA 58.347 55.000 8.98 0.00 0.00 3.02
69 70 2.197465 GGGGAGAGGGTTGTACAAGAT 58.803 52.381 8.98 0.00 0.00 2.40
70 71 2.170817 GGGGAGAGGGTTGTACAAGATC 59.829 54.545 8.98 7.47 0.00 2.75
71 72 2.838202 GGGAGAGGGTTGTACAAGATCA 59.162 50.000 8.98 0.00 0.00 2.92
72 73 3.263425 GGGAGAGGGTTGTACAAGATCAA 59.737 47.826 8.98 0.00 0.00 2.57
73 74 4.508662 GGAGAGGGTTGTACAAGATCAAG 58.491 47.826 8.98 0.00 0.00 3.02
74 75 4.508662 GAGAGGGTTGTACAAGATCAAGG 58.491 47.826 8.98 0.00 0.00 3.61
75 76 4.168101 AGAGGGTTGTACAAGATCAAGGA 58.832 43.478 8.98 0.00 0.00 3.36
76 77 4.597507 AGAGGGTTGTACAAGATCAAGGAA 59.402 41.667 8.98 0.00 0.00 3.36
77 78 4.911390 AGGGTTGTACAAGATCAAGGAAG 58.089 43.478 8.98 0.00 0.00 3.46
78 79 4.597507 AGGGTTGTACAAGATCAAGGAAGA 59.402 41.667 8.98 0.00 0.00 2.87
79 80 4.938226 GGGTTGTACAAGATCAAGGAAGAG 59.062 45.833 8.98 0.00 0.00 2.85
80 81 5.280011 GGGTTGTACAAGATCAAGGAAGAGA 60.280 44.000 8.98 0.00 0.00 3.10
81 82 5.872070 GGTTGTACAAGATCAAGGAAGAGAG 59.128 44.000 8.98 0.00 0.00 3.20
82 83 5.667539 TGTACAAGATCAAGGAAGAGAGG 57.332 43.478 0.00 0.00 0.00 3.69
83 84 4.467795 TGTACAAGATCAAGGAAGAGAGGG 59.532 45.833 0.00 0.00 0.00 4.30
84 85 2.843113 ACAAGATCAAGGAAGAGAGGGG 59.157 50.000 0.00 0.00 0.00 4.79
85 86 2.172293 CAAGATCAAGGAAGAGAGGGGG 59.828 54.545 0.00 0.00 0.00 5.40
86 87 1.653918 AGATCAAGGAAGAGAGGGGGA 59.346 52.381 0.00 0.00 0.00 4.81
87 88 1.765904 GATCAAGGAAGAGAGGGGGAC 59.234 57.143 0.00 0.00 0.00 4.46
88 89 0.614979 TCAAGGAAGAGAGGGGGACG 60.615 60.000 0.00 0.00 0.00 4.79
89 90 0.614979 CAAGGAAGAGAGGGGGACGA 60.615 60.000 0.00 0.00 0.00 4.20
90 91 0.324830 AAGGAAGAGAGGGGGACGAG 60.325 60.000 0.00 0.00 0.00 4.18
91 92 1.758906 GGAAGAGAGGGGGACGAGG 60.759 68.421 0.00 0.00 0.00 4.63
92 93 1.000612 GAAGAGAGGGGGACGAGGT 59.999 63.158 0.00 0.00 0.00 3.85
93 94 0.615261 GAAGAGAGGGGGACGAGGTT 60.615 60.000 0.00 0.00 0.00 3.50
94 95 0.178900 AAGAGAGGGGGACGAGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
95 96 0.178900 AGAGAGGGGGACGAGGTTTT 60.179 55.000 0.00 0.00 0.00 2.43
96 97 0.691332 GAGAGGGGGACGAGGTTTTT 59.309 55.000 0.00 0.00 0.00 1.94
140 141 2.231716 GGGGGTTGCTTACCTTGATT 57.768 50.000 8.22 0.00 46.86 2.57
141 142 2.536066 GGGGGTTGCTTACCTTGATTT 58.464 47.619 8.22 0.00 46.86 2.17
142 143 3.703921 GGGGGTTGCTTACCTTGATTTA 58.296 45.455 8.22 0.00 46.86 1.40
143 144 4.090819 GGGGGTTGCTTACCTTGATTTAA 58.909 43.478 8.22 0.00 46.86 1.52
144 145 4.159693 GGGGGTTGCTTACCTTGATTTAAG 59.840 45.833 8.22 0.00 46.86 1.85
145 146 5.014202 GGGGTTGCTTACCTTGATTTAAGA 58.986 41.667 8.22 0.00 46.86 2.10
146 147 5.656859 GGGGTTGCTTACCTTGATTTAAGAT 59.343 40.000 8.22 0.00 46.86 2.40
147 148 6.405842 GGGGTTGCTTACCTTGATTTAAGATG 60.406 42.308 8.22 0.00 46.86 2.90
148 149 6.036470 GGTTGCTTACCTTGATTTAAGATGC 58.964 40.000 1.81 0.00 44.10 3.91
149 150 5.835113 TGCTTACCTTGATTTAAGATGCC 57.165 39.130 0.00 0.00 38.76 4.40
150 151 5.260424 TGCTTACCTTGATTTAAGATGCCA 58.740 37.500 0.00 0.00 38.76 4.92
151 152 5.893255 TGCTTACCTTGATTTAAGATGCCAT 59.107 36.000 0.00 0.00 38.76 4.40
152 153 6.183360 TGCTTACCTTGATTTAAGATGCCATG 60.183 38.462 0.00 0.00 38.76 3.66
153 154 6.713762 TTACCTTGATTTAAGATGCCATGG 57.286 37.500 7.63 7.63 38.76 3.66
154 155 4.870636 ACCTTGATTTAAGATGCCATGGA 58.129 39.130 18.40 0.31 38.76 3.41
155 156 5.461327 ACCTTGATTTAAGATGCCATGGAT 58.539 37.500 18.40 6.13 38.76 3.41
156 157 5.303589 ACCTTGATTTAAGATGCCATGGATG 59.696 40.000 18.40 0.00 38.76 3.51
157 158 5.537295 CCTTGATTTAAGATGCCATGGATGA 59.463 40.000 18.40 0.00 38.76 2.92
158 159 6.294564 CCTTGATTTAAGATGCCATGGATGAG 60.295 42.308 18.40 0.00 38.76 2.90
159 160 5.074804 TGATTTAAGATGCCATGGATGAGG 58.925 41.667 18.40 0.00 0.00 3.86
160 161 4.794311 TTTAAGATGCCATGGATGAGGA 57.206 40.909 18.40 0.00 0.00 3.71
161 162 4.794311 TTAAGATGCCATGGATGAGGAA 57.206 40.909 18.40 0.00 0.00 3.36
162 163 2.953284 AGATGCCATGGATGAGGAAG 57.047 50.000 18.40 0.00 0.00 3.46
163 164 1.202903 AGATGCCATGGATGAGGAAGC 60.203 52.381 18.40 0.00 0.00 3.86
164 165 0.851469 ATGCCATGGATGAGGAAGCT 59.149 50.000 18.40 0.00 0.00 3.74
165 166 0.627451 TGCCATGGATGAGGAAGCTT 59.373 50.000 18.40 0.00 0.00 3.74
166 167 1.006281 TGCCATGGATGAGGAAGCTTT 59.994 47.619 18.40 0.00 0.00 3.51
167 168 1.407979 GCCATGGATGAGGAAGCTTTG 59.592 52.381 18.40 0.00 0.00 2.77
168 169 1.407979 CCATGGATGAGGAAGCTTTGC 59.592 52.381 5.56 0.00 0.00 3.68
169 170 1.407979 CATGGATGAGGAAGCTTTGCC 59.592 52.381 0.00 0.00 0.00 4.52
170 171 0.700564 TGGATGAGGAAGCTTTGCCT 59.299 50.000 6.41 6.41 37.18 4.75
171 172 1.101331 GGATGAGGAAGCTTTGCCTG 58.899 55.000 11.29 0.00 33.84 4.85
172 173 1.101331 GATGAGGAAGCTTTGCCTGG 58.899 55.000 11.29 0.00 33.84 4.45
173 174 0.407139 ATGAGGAAGCTTTGCCTGGT 59.593 50.000 11.29 0.00 33.84 4.00
174 175 0.185901 TGAGGAAGCTTTGCCTGGTT 59.814 50.000 11.29 0.00 33.84 3.67
175 176 0.884514 GAGGAAGCTTTGCCTGGTTC 59.115 55.000 11.29 0.00 40.10 3.62
176 177 0.480252 AGGAAGCTTTGCCTGGTTCT 59.520 50.000 5.92 0.00 40.50 3.01
177 178 1.133356 AGGAAGCTTTGCCTGGTTCTT 60.133 47.619 5.92 3.17 40.50 2.52
178 179 1.270826 GGAAGCTTTGCCTGGTTCTTC 59.729 52.381 0.00 1.93 40.50 2.87
179 180 0.954452 AAGCTTTGCCTGGTTCTTCG 59.046 50.000 0.00 0.00 0.00 3.79
180 181 0.890996 AGCTTTGCCTGGTTCTTCGG 60.891 55.000 0.00 0.00 0.00 4.30
181 182 1.866853 GCTTTGCCTGGTTCTTCGGG 61.867 60.000 0.00 0.00 36.28 5.14
182 183 0.537371 CTTTGCCTGGTTCTTCGGGT 60.537 55.000 0.00 0.00 35.63 5.28
183 184 0.536460 TTTGCCTGGTTCTTCGGGTC 60.536 55.000 0.00 0.00 35.63 4.46
184 185 1.415672 TTGCCTGGTTCTTCGGGTCT 61.416 55.000 0.00 0.00 35.63 3.85
185 186 1.376037 GCCTGGTTCTTCGGGTCTG 60.376 63.158 0.00 0.00 35.63 3.51
186 187 1.827399 GCCTGGTTCTTCGGGTCTGA 61.827 60.000 0.00 0.00 35.63 3.27
187 188 0.905357 CCTGGTTCTTCGGGTCTGAT 59.095 55.000 0.00 0.00 0.00 2.90
188 189 1.279271 CCTGGTTCTTCGGGTCTGATT 59.721 52.381 0.00 0.00 0.00 2.57
189 190 2.500098 CCTGGTTCTTCGGGTCTGATTA 59.500 50.000 0.00 0.00 0.00 1.75
190 191 3.430929 CCTGGTTCTTCGGGTCTGATTAG 60.431 52.174 0.00 0.00 0.00 1.73
191 192 2.500098 TGGTTCTTCGGGTCTGATTAGG 59.500 50.000 0.00 0.00 0.00 2.69
192 193 2.764572 GGTTCTTCGGGTCTGATTAGGA 59.235 50.000 0.00 0.00 0.00 2.94
193 194 3.181474 GGTTCTTCGGGTCTGATTAGGAG 60.181 52.174 0.00 0.00 0.00 3.69
194 195 2.667470 TCTTCGGGTCTGATTAGGAGG 58.333 52.381 0.00 0.00 0.00 4.30
195 196 2.243994 TCTTCGGGTCTGATTAGGAGGA 59.756 50.000 0.00 0.00 0.00 3.71
196 197 2.840640 TCGGGTCTGATTAGGAGGAA 57.159 50.000 0.00 0.00 0.00 3.36
197 198 2.667470 TCGGGTCTGATTAGGAGGAAG 58.333 52.381 0.00 0.00 0.00 3.46
198 199 2.243994 TCGGGTCTGATTAGGAGGAAGA 59.756 50.000 0.00 0.00 0.00 2.87
199 200 3.031736 CGGGTCTGATTAGGAGGAAGAA 58.968 50.000 0.00 0.00 0.00 2.52
200 201 3.068873 CGGGTCTGATTAGGAGGAAGAAG 59.931 52.174 0.00 0.00 0.00 2.85
201 202 3.389656 GGGTCTGATTAGGAGGAAGAAGG 59.610 52.174 0.00 0.00 0.00 3.46
202 203 4.034410 GGTCTGATTAGGAGGAAGAAGGT 58.966 47.826 0.00 0.00 0.00 3.50
203 204 4.471747 GGTCTGATTAGGAGGAAGAAGGTT 59.528 45.833 0.00 0.00 0.00 3.50
204 205 5.395879 GGTCTGATTAGGAGGAAGAAGGTTC 60.396 48.000 0.00 0.00 0.00 3.62
205 206 5.187967 GTCTGATTAGGAGGAAGAAGGTTCA 59.812 44.000 0.00 0.00 0.00 3.18
206 207 5.423610 TCTGATTAGGAGGAAGAAGGTTCAG 59.576 44.000 0.00 0.00 0.00 3.02
207 208 4.471386 TGATTAGGAGGAAGAAGGTTCAGG 59.529 45.833 0.00 0.00 0.00 3.86
208 209 0.988063 AGGAGGAAGAAGGTTCAGGC 59.012 55.000 0.00 0.00 0.00 4.85
209 210 0.391793 GGAGGAAGAAGGTTCAGGCG 60.392 60.000 0.00 0.00 0.00 5.52
210 211 0.321996 GAGGAAGAAGGTTCAGGCGT 59.678 55.000 0.00 0.00 0.00 5.68
211 212 0.035458 AGGAAGAAGGTTCAGGCGTG 59.965 55.000 0.00 0.00 0.00 5.34
212 213 0.955919 GGAAGAAGGTTCAGGCGTGG 60.956 60.000 6.56 0.00 0.00 4.94
213 214 0.955919 GAAGAAGGTTCAGGCGTGGG 60.956 60.000 6.56 0.00 0.00 4.61
214 215 3.056328 GAAGGTTCAGGCGTGGGC 61.056 66.667 6.56 0.00 38.90 5.36
215 216 3.553095 GAAGGTTCAGGCGTGGGCT 62.553 63.158 6.56 0.00 39.66 5.19
216 217 3.133365 AAGGTTCAGGCGTGGGCTT 62.133 57.895 6.56 0.00 35.88 4.35
217 218 3.365265 GGTTCAGGCGTGGGCTTG 61.365 66.667 6.56 0.00 46.76 4.01
218 219 4.043200 GTTCAGGCGTGGGCTTGC 62.043 66.667 6.56 0.00 45.16 4.01
219 220 4.269523 TTCAGGCGTGGGCTTGCT 62.270 61.111 6.56 0.00 45.16 3.91
220 221 3.790416 TTCAGGCGTGGGCTTGCTT 62.790 57.895 6.56 0.00 45.16 3.91
221 222 4.047059 CAGGCGTGGGCTTGCTTG 62.047 66.667 0.00 0.00 39.52 4.01
222 223 4.586235 AGGCGTGGGCTTGCTTGT 62.586 61.111 0.00 0.00 39.81 3.16
223 224 4.043200 GGCGTGGGCTTGCTTGTC 62.043 66.667 0.00 0.00 39.81 3.18
224 225 3.286751 GCGTGGGCTTGCTTGTCA 61.287 61.111 0.00 0.00 35.83 3.58
225 226 2.844451 GCGTGGGCTTGCTTGTCAA 61.844 57.895 0.00 0.00 35.83 3.18
226 227 1.732917 CGTGGGCTTGCTTGTCAAA 59.267 52.632 0.00 0.00 33.65 2.69
227 228 0.102120 CGTGGGCTTGCTTGTCAAAA 59.898 50.000 0.00 0.00 33.65 2.44
228 229 1.470632 CGTGGGCTTGCTTGTCAAAAA 60.471 47.619 0.00 0.00 33.65 1.94
248 249 3.396491 GACAGAGGGTCGTAACGTG 57.604 57.895 0.00 0.00 36.65 4.49
249 250 0.877071 GACAGAGGGTCGTAACGTGA 59.123 55.000 0.00 0.00 36.65 4.35
250 251 0.879765 ACAGAGGGTCGTAACGTGAG 59.120 55.000 0.00 0.00 0.00 3.51
251 252 1.162698 CAGAGGGTCGTAACGTGAGA 58.837 55.000 0.00 0.00 0.00 3.27
252 253 1.130749 CAGAGGGTCGTAACGTGAGAG 59.869 57.143 0.00 0.00 0.00 3.20
253 254 0.450983 GAGGGTCGTAACGTGAGAGG 59.549 60.000 0.00 0.00 0.00 3.69
254 255 0.037303 AGGGTCGTAACGTGAGAGGA 59.963 55.000 0.00 0.00 0.00 3.71
255 256 0.883833 GGGTCGTAACGTGAGAGGAA 59.116 55.000 0.00 0.00 0.00 3.36
256 257 1.135460 GGGTCGTAACGTGAGAGGAAG 60.135 57.143 0.00 0.00 0.00 3.46
257 258 1.808945 GGTCGTAACGTGAGAGGAAGA 59.191 52.381 0.00 0.00 0.00 2.87
258 259 2.227388 GGTCGTAACGTGAGAGGAAGAA 59.773 50.000 0.00 0.00 0.00 2.52
259 260 3.490399 GTCGTAACGTGAGAGGAAGAAG 58.510 50.000 0.00 0.00 0.00 2.85
260 261 3.188048 GTCGTAACGTGAGAGGAAGAAGA 59.812 47.826 0.00 0.00 0.00 2.87
261 262 4.008330 TCGTAACGTGAGAGGAAGAAGAT 58.992 43.478 0.00 0.00 0.00 2.40
262 263 4.099120 CGTAACGTGAGAGGAAGAAGATG 58.901 47.826 0.00 0.00 0.00 2.90
263 264 3.601443 AACGTGAGAGGAAGAAGATGG 57.399 47.619 0.00 0.00 0.00 3.51
264 265 1.827969 ACGTGAGAGGAAGAAGATGGG 59.172 52.381 0.00 0.00 0.00 4.00
265 266 2.103373 CGTGAGAGGAAGAAGATGGGA 58.897 52.381 0.00 0.00 0.00 4.37
266 267 2.497675 CGTGAGAGGAAGAAGATGGGAA 59.502 50.000 0.00 0.00 0.00 3.97
267 268 3.677424 CGTGAGAGGAAGAAGATGGGAAC 60.677 52.174 0.00 0.00 0.00 3.62
281 282 1.522569 GGAACCAGACGGGATGAGG 59.477 63.158 0.00 0.00 41.15 3.86
282 283 1.522569 GAACCAGACGGGATGAGGG 59.477 63.158 0.00 0.00 41.15 4.30
283 284 0.976073 GAACCAGACGGGATGAGGGA 60.976 60.000 0.00 0.00 41.15 4.20
284 285 0.978146 AACCAGACGGGATGAGGGAG 60.978 60.000 0.00 0.00 41.15 4.30
285 286 1.075970 CCAGACGGGATGAGGGAGA 60.076 63.158 0.00 0.00 40.01 3.71
286 287 1.395826 CCAGACGGGATGAGGGAGAC 61.396 65.000 0.00 0.00 40.01 3.36
287 288 1.454111 AGACGGGATGAGGGAGACG 60.454 63.158 0.00 0.00 0.00 4.18
288 289 1.753463 GACGGGATGAGGGAGACGT 60.753 63.158 0.00 0.00 37.26 4.34
289 290 1.305046 ACGGGATGAGGGAGACGTT 60.305 57.895 0.00 0.00 0.00 3.99
290 291 1.141881 CGGGATGAGGGAGACGTTG 59.858 63.158 0.00 0.00 0.00 4.10
291 292 1.522569 GGGATGAGGGAGACGTTGG 59.477 63.158 0.00 0.00 0.00 3.77
292 293 1.153349 GGATGAGGGAGACGTTGGC 60.153 63.158 0.00 0.00 0.00 4.52
293 294 1.153349 GATGAGGGAGACGTTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
294 295 1.899437 GATGAGGGAGACGTTGGCCA 61.899 60.000 0.00 0.00 0.00 5.36
295 296 1.903877 ATGAGGGAGACGTTGGCCAG 61.904 60.000 5.11 0.00 0.00 4.85
296 297 2.203788 AGGGAGACGTTGGCCAGA 60.204 61.111 5.11 0.00 0.00 3.86
297 298 1.827399 GAGGGAGACGTTGGCCAGAA 61.827 60.000 5.11 0.00 0.00 3.02
298 299 1.671379 GGGAGACGTTGGCCAGAAC 60.671 63.158 5.11 0.37 0.00 3.01
303 304 3.645975 CGTTGGCCAGAACGCGTT 61.646 61.111 26.97 26.97 41.98 4.84
304 305 2.051345 GTTGGCCAGAACGCGTTG 60.051 61.111 31.89 17.21 0.00 4.10
305 306 3.283684 TTGGCCAGAACGCGTTGG 61.284 61.111 31.89 26.72 37.53 3.77
306 307 4.555709 TGGCCAGAACGCGTTGGT 62.556 61.111 31.89 13.83 36.81 3.67
307 308 4.025401 GGCCAGAACGCGTTGGTG 62.025 66.667 31.89 24.37 36.81 4.17
308 309 4.683334 GCCAGAACGCGTTGGTGC 62.683 66.667 31.89 22.94 36.81 5.01
309 310 2.972505 CCAGAACGCGTTGGTGCT 60.973 61.111 31.89 17.36 0.00 4.40
310 311 2.249309 CAGAACGCGTTGGTGCTG 59.751 61.111 31.89 24.64 37.24 4.41
311 312 2.972505 AGAACGCGTTGGTGCTGG 60.973 61.111 31.89 0.00 0.00 4.85
312 313 4.025401 GAACGCGTTGGTGCTGGG 62.025 66.667 31.89 0.00 0.00 4.45
313 314 4.555709 AACGCGTTGGTGCTGGGA 62.556 61.111 26.00 0.00 0.00 4.37
314 315 4.555709 ACGCGTTGGTGCTGGGAA 62.556 61.111 5.58 0.00 0.00 3.97
315 316 4.025401 CGCGTTGGTGCTGGGAAC 62.025 66.667 0.00 0.00 0.00 3.62
316 317 4.025401 GCGTTGGTGCTGGGAACG 62.025 66.667 0.00 0.00 44.11 3.95
317 318 3.353836 CGTTGGTGCTGGGAACGG 61.354 66.667 0.00 0.00 38.99 4.44
318 319 2.112297 GTTGGTGCTGGGAACGGA 59.888 61.111 0.00 0.00 39.98 4.69
319 320 2.112297 TTGGTGCTGGGAACGGAC 59.888 61.111 0.00 0.00 39.98 4.79
320 321 2.448582 TTGGTGCTGGGAACGGACT 61.449 57.895 0.00 0.00 39.98 3.85
321 322 1.122632 TTGGTGCTGGGAACGGACTA 61.123 55.000 0.00 0.00 39.98 2.59
322 323 1.218316 GGTGCTGGGAACGGACTAG 59.782 63.158 0.00 0.00 39.98 2.57
323 324 1.218316 GTGCTGGGAACGGACTAGG 59.782 63.158 0.00 0.00 39.98 3.02
324 325 1.077805 TGCTGGGAACGGACTAGGA 59.922 57.895 0.00 0.00 39.98 2.94
325 326 0.970937 TGCTGGGAACGGACTAGGAG 60.971 60.000 0.00 0.00 39.98 3.69
326 327 1.677637 GCTGGGAACGGACTAGGAGG 61.678 65.000 0.00 0.00 39.98 4.30
327 328 1.677637 CTGGGAACGGACTAGGAGGC 61.678 65.000 0.00 0.00 39.98 4.70
328 329 2.783288 GGGAACGGACTAGGAGGCG 61.783 68.421 0.00 0.00 0.00 5.52
329 330 2.104530 GAACGGACTAGGAGGCGC 59.895 66.667 0.00 0.00 0.00 6.53
330 331 3.753070 GAACGGACTAGGAGGCGCG 62.753 68.421 0.00 0.00 0.00 6.86
332 333 4.554363 CGGACTAGGAGGCGCGTG 62.554 72.222 7.63 0.00 0.00 5.34
333 334 4.208686 GGACTAGGAGGCGCGTGG 62.209 72.222 7.63 0.00 0.00 4.94
334 335 4.208686 GACTAGGAGGCGCGTGGG 62.209 72.222 7.63 0.00 0.00 4.61
336 337 2.831742 CTAGGAGGCGCGTGGGTA 60.832 66.667 7.63 0.00 0.00 3.69
337 338 2.831742 TAGGAGGCGCGTGGGTAG 60.832 66.667 7.63 0.00 0.00 3.18
350 351 3.534941 GGTAGGGACCAGGCGTAG 58.465 66.667 0.00 0.00 46.12 3.51
351 352 2.132352 GGTAGGGACCAGGCGTAGG 61.132 68.421 0.00 0.00 46.12 3.18
362 363 2.357760 GCGTAGGCGTGGGTGAAA 60.358 61.111 0.00 0.00 40.81 2.69
363 364 2.388232 GCGTAGGCGTGGGTGAAAG 61.388 63.158 0.00 0.00 40.81 2.62
364 365 1.740296 CGTAGGCGTGGGTGAAAGG 60.740 63.158 0.00 0.00 0.00 3.11
365 366 2.038837 GTAGGCGTGGGTGAAAGGC 61.039 63.158 0.00 0.00 0.00 4.35
366 367 3.599285 TAGGCGTGGGTGAAAGGCG 62.599 63.158 0.00 0.00 0.00 5.52
368 369 4.025401 GCGTGGGTGAAAGGCGTG 62.025 66.667 0.00 0.00 0.00 5.34
369 370 4.025401 CGTGGGTGAAAGGCGTGC 62.025 66.667 0.00 0.00 0.00 5.34
370 371 4.025401 GTGGGTGAAAGGCGTGCG 62.025 66.667 0.00 0.00 0.00 5.34
371 372 4.555709 TGGGTGAAAGGCGTGCGT 62.556 61.111 0.00 0.00 0.00 5.24
372 373 2.357760 GGGTGAAAGGCGTGCGTA 60.358 61.111 0.00 0.00 0.00 4.42
373 374 1.743995 GGGTGAAAGGCGTGCGTAT 60.744 57.895 0.00 0.00 0.00 3.06
374 375 1.423845 GGTGAAAGGCGTGCGTATG 59.576 57.895 0.00 0.00 0.00 2.39
375 376 1.423845 GTGAAAGGCGTGCGTATGG 59.576 57.895 0.00 0.00 0.00 2.74
376 377 1.017177 GTGAAAGGCGTGCGTATGGA 61.017 55.000 0.00 0.00 0.00 3.41
377 378 0.107897 TGAAAGGCGTGCGTATGGAT 60.108 50.000 0.00 0.00 0.00 3.41
378 379 0.304705 GAAAGGCGTGCGTATGGATG 59.695 55.000 0.00 0.00 0.00 3.51
379 380 0.392461 AAAGGCGTGCGTATGGATGT 60.392 50.000 0.00 0.00 0.00 3.06
380 381 0.392461 AAGGCGTGCGTATGGATGTT 60.392 50.000 0.00 0.00 0.00 2.71
381 382 0.392461 AGGCGTGCGTATGGATGTTT 60.392 50.000 0.00 0.00 0.00 2.83
382 383 0.027586 GGCGTGCGTATGGATGTTTC 59.972 55.000 0.00 0.00 0.00 2.78
383 384 0.027586 GCGTGCGTATGGATGTTTCC 59.972 55.000 0.00 0.00 42.94 3.13
384 385 1.651987 CGTGCGTATGGATGTTTCCT 58.348 50.000 0.00 0.00 43.07 3.36
385 386 2.006888 CGTGCGTATGGATGTTTCCTT 58.993 47.619 0.00 0.00 43.07 3.36
386 387 2.418628 CGTGCGTATGGATGTTTCCTTT 59.581 45.455 0.00 0.00 43.07 3.11
387 388 3.119990 CGTGCGTATGGATGTTTCCTTTT 60.120 43.478 0.00 0.00 43.07 2.27
388 389 4.614993 CGTGCGTATGGATGTTTCCTTTTT 60.615 41.667 0.00 0.00 43.07 1.94
389 390 4.857037 GTGCGTATGGATGTTTCCTTTTTC 59.143 41.667 0.00 0.00 43.07 2.29
390 391 4.095610 GCGTATGGATGTTTCCTTTTTCG 58.904 43.478 0.00 0.00 43.07 3.46
391 392 4.658071 CGTATGGATGTTTCCTTTTTCGG 58.342 43.478 0.00 0.00 43.07 4.30
392 393 4.155280 CGTATGGATGTTTCCTTTTTCGGT 59.845 41.667 0.00 0.00 43.07 4.69
393 394 5.335348 CGTATGGATGTTTCCTTTTTCGGTT 60.335 40.000 0.00 0.00 43.07 4.44
394 395 4.314740 TGGATGTTTCCTTTTTCGGTTG 57.685 40.909 0.00 0.00 43.07 3.77
395 396 3.702045 TGGATGTTTCCTTTTTCGGTTGT 59.298 39.130 0.00 0.00 43.07 3.32
396 397 4.202070 TGGATGTTTCCTTTTTCGGTTGTC 60.202 41.667 0.00 0.00 43.07 3.18
397 398 4.037565 GGATGTTTCCTTTTTCGGTTGTCT 59.962 41.667 0.00 0.00 39.14 3.41
398 399 5.451381 GGATGTTTCCTTTTTCGGTTGTCTT 60.451 40.000 0.00 0.00 39.14 3.01
399 400 4.739195 TGTTTCCTTTTTCGGTTGTCTTG 58.261 39.130 0.00 0.00 0.00 3.02
400 401 4.459685 TGTTTCCTTTTTCGGTTGTCTTGA 59.540 37.500 0.00 0.00 0.00 3.02
401 402 5.126384 TGTTTCCTTTTTCGGTTGTCTTGAT 59.874 36.000 0.00 0.00 0.00 2.57
402 403 5.432885 TTCCTTTTTCGGTTGTCTTGATC 57.567 39.130 0.00 0.00 0.00 2.92
403 404 4.456535 TCCTTTTTCGGTTGTCTTGATCA 58.543 39.130 0.00 0.00 0.00 2.92
404 405 4.274950 TCCTTTTTCGGTTGTCTTGATCAC 59.725 41.667 0.00 0.00 0.00 3.06
405 406 3.870723 TTTTCGGTTGTCTTGATCACG 57.129 42.857 0.00 0.00 0.00 4.35
406 407 1.144969 TTCGGTTGTCTTGATCACGC 58.855 50.000 0.00 0.00 0.00 5.34
407 408 0.032815 TCGGTTGTCTTGATCACGCA 59.967 50.000 0.00 0.00 0.00 5.24
408 409 0.163788 CGGTTGTCTTGATCACGCAC 59.836 55.000 0.00 0.00 0.00 5.34
409 410 1.225855 GGTTGTCTTGATCACGCACA 58.774 50.000 0.00 0.00 0.00 4.57
410 411 1.601903 GGTTGTCTTGATCACGCACAA 59.398 47.619 0.00 1.94 0.00 3.33
411 412 2.602217 GGTTGTCTTGATCACGCACAAC 60.602 50.000 23.60 23.60 44.00 3.32
412 413 2.238942 TGTCTTGATCACGCACAACT 57.761 45.000 0.00 0.00 0.00 3.16
413 414 3.378911 TGTCTTGATCACGCACAACTA 57.621 42.857 0.00 0.00 0.00 2.24
414 415 3.057019 TGTCTTGATCACGCACAACTAC 58.943 45.455 0.00 0.00 0.00 2.73
415 416 3.243737 TGTCTTGATCACGCACAACTACT 60.244 43.478 0.00 0.00 0.00 2.57
416 417 3.365220 GTCTTGATCACGCACAACTACTC 59.635 47.826 0.00 0.00 0.00 2.59
417 418 2.363788 TGATCACGCACAACTACTCC 57.636 50.000 0.00 0.00 0.00 3.85
418 419 1.893137 TGATCACGCACAACTACTCCT 59.107 47.619 0.00 0.00 0.00 3.69
419 420 2.299013 TGATCACGCACAACTACTCCTT 59.701 45.455 0.00 0.00 0.00 3.36
420 421 2.902705 TCACGCACAACTACTCCTTT 57.097 45.000 0.00 0.00 0.00 3.11
421 422 2.750948 TCACGCACAACTACTCCTTTC 58.249 47.619 0.00 0.00 0.00 2.62
422 423 2.364324 TCACGCACAACTACTCCTTTCT 59.636 45.455 0.00 0.00 0.00 2.52
423 424 3.131396 CACGCACAACTACTCCTTTCTT 58.869 45.455 0.00 0.00 0.00 2.52
424 425 3.560068 CACGCACAACTACTCCTTTCTTT 59.440 43.478 0.00 0.00 0.00 2.52
425 426 4.035208 CACGCACAACTACTCCTTTCTTTT 59.965 41.667 0.00 0.00 0.00 2.27
426 427 4.638865 ACGCACAACTACTCCTTTCTTTTT 59.361 37.500 0.00 0.00 0.00 1.94
447 448 5.755409 TTTGGGAGAGCTTCACTATTACA 57.245 39.130 0.00 0.00 0.00 2.41
448 449 5.755409 TTGGGAGAGCTTCACTATTACAA 57.245 39.130 0.00 0.00 0.00 2.41
449 450 5.755409 TGGGAGAGCTTCACTATTACAAA 57.245 39.130 0.00 0.00 0.00 2.83
450 451 6.313519 TGGGAGAGCTTCACTATTACAAAT 57.686 37.500 0.00 0.00 0.00 2.32
451 452 6.115446 TGGGAGAGCTTCACTATTACAAATG 58.885 40.000 0.00 0.00 0.00 2.32
452 453 5.529060 GGGAGAGCTTCACTATTACAAATGG 59.471 44.000 0.00 0.00 0.00 3.16
453 454 5.529060 GGAGAGCTTCACTATTACAAATGGG 59.471 44.000 0.00 0.00 0.00 4.00
454 455 4.884164 AGAGCTTCACTATTACAAATGGGC 59.116 41.667 0.00 0.00 0.00 5.36
455 456 3.627577 AGCTTCACTATTACAAATGGGCG 59.372 43.478 0.00 0.00 0.00 6.13
456 457 3.377172 GCTTCACTATTACAAATGGGCGT 59.623 43.478 0.00 0.00 0.00 5.68
457 458 4.495844 GCTTCACTATTACAAATGGGCGTC 60.496 45.833 0.00 0.00 0.00 5.19
458 459 3.537580 TCACTATTACAAATGGGCGTCC 58.462 45.455 0.00 0.00 0.00 4.79
459 460 2.286833 CACTATTACAAATGGGCGTCCG 59.713 50.000 0.00 0.00 35.24 4.79
460 461 1.871039 CTATTACAAATGGGCGTCCGG 59.129 52.381 0.00 0.00 35.24 5.14
461 462 0.253610 ATTACAAATGGGCGTCCGGA 59.746 50.000 0.00 0.00 35.24 5.14
462 463 0.036448 TTACAAATGGGCGTCCGGAA 59.964 50.000 5.23 0.00 35.24 4.30
463 464 0.391927 TACAAATGGGCGTCCGGAAG 60.392 55.000 13.59 13.59 35.24 3.46
464 465 1.674322 CAAATGGGCGTCCGGAAGT 60.674 57.895 18.88 0.00 35.24 3.01
465 466 1.376812 AAATGGGCGTCCGGAAGTC 60.377 57.895 18.88 16.63 35.24 3.01
466 467 3.659089 AATGGGCGTCCGGAAGTCG 62.659 63.158 18.88 13.64 35.24 4.18
476 477 2.478989 CGGAAGTCGGCTAGTCAGA 58.521 57.895 0.00 0.00 34.75 3.27
477 478 1.025812 CGGAAGTCGGCTAGTCAGAT 58.974 55.000 0.00 0.00 34.75 2.90
478 479 1.405821 CGGAAGTCGGCTAGTCAGATT 59.594 52.381 0.00 0.00 34.75 2.40
479 480 2.541999 CGGAAGTCGGCTAGTCAGATTC 60.542 54.545 0.00 0.00 34.75 2.52
480 481 2.427453 GGAAGTCGGCTAGTCAGATTCA 59.573 50.000 0.00 0.00 0.00 2.57
481 482 3.068873 GGAAGTCGGCTAGTCAGATTCAT 59.931 47.826 0.00 0.00 0.00 2.57
482 483 4.442192 GGAAGTCGGCTAGTCAGATTCATT 60.442 45.833 0.00 0.00 0.00 2.57
483 484 4.744795 AGTCGGCTAGTCAGATTCATTT 57.255 40.909 0.00 0.00 0.00 2.32
484 485 5.854010 AGTCGGCTAGTCAGATTCATTTA 57.146 39.130 0.00 0.00 0.00 1.40
485 486 6.412362 AGTCGGCTAGTCAGATTCATTTAT 57.588 37.500 0.00 0.00 0.00 1.40
486 487 6.821388 AGTCGGCTAGTCAGATTCATTTATT 58.179 36.000 0.00 0.00 0.00 1.40
487 488 7.275920 AGTCGGCTAGTCAGATTCATTTATTT 58.724 34.615 0.00 0.00 0.00 1.40
488 489 7.770897 AGTCGGCTAGTCAGATTCATTTATTTT 59.229 33.333 0.00 0.00 0.00 1.82
489 490 7.852945 GTCGGCTAGTCAGATTCATTTATTTTG 59.147 37.037 0.00 0.00 0.00 2.44
490 491 7.552687 TCGGCTAGTCAGATTCATTTATTTTGT 59.447 33.333 0.00 0.00 0.00 2.83
491 492 8.826710 CGGCTAGTCAGATTCATTTATTTTGTA 58.173 33.333 0.00 0.00 0.00 2.41
497 498 9.878599 GTCAGATTCATTTATTTTGTATACGGG 57.121 33.333 0.00 0.00 0.00 5.28
498 499 9.621629 TCAGATTCATTTATTTTGTATACGGGT 57.378 29.630 0.00 0.00 0.00 5.28
499 500 9.878599 CAGATTCATTTATTTTGTATACGGGTC 57.121 33.333 0.00 0.00 0.00 4.46
500 501 8.770828 AGATTCATTTATTTTGTATACGGGTCG 58.229 33.333 0.00 0.00 0.00 4.79
501 502 7.846644 TTCATTTATTTTGTATACGGGTCGT 57.153 32.000 0.00 0.00 44.35 4.34
502 503 7.846644 TCATTTATTTTGTATACGGGTCGTT 57.153 32.000 0.00 0.00 41.54 3.85
503 504 7.908230 TCATTTATTTTGTATACGGGTCGTTC 58.092 34.615 0.00 0.00 41.54 3.95
504 505 7.765360 TCATTTATTTTGTATACGGGTCGTTCT 59.235 33.333 0.00 0.00 41.54 3.01
505 506 6.890663 TTATTTTGTATACGGGTCGTTCTG 57.109 37.500 0.00 0.00 41.54 3.02
506 507 3.940209 TTTGTATACGGGTCGTTCTGT 57.060 42.857 0.00 0.00 41.54 3.41
507 508 3.492421 TTGTATACGGGTCGTTCTGTC 57.508 47.619 0.00 0.00 41.54 3.51
508 509 2.715046 TGTATACGGGTCGTTCTGTCT 58.285 47.619 0.00 0.00 41.54 3.41
509 510 3.872696 TGTATACGGGTCGTTCTGTCTA 58.127 45.455 0.00 0.00 41.54 2.59
510 511 4.454678 TGTATACGGGTCGTTCTGTCTAT 58.545 43.478 0.00 0.00 41.54 1.98
511 512 4.883585 TGTATACGGGTCGTTCTGTCTATT 59.116 41.667 0.00 0.00 41.54 1.73
512 513 2.935481 ACGGGTCGTTCTGTCTATTC 57.065 50.000 0.00 0.00 36.35 1.75
513 514 2.165167 ACGGGTCGTTCTGTCTATTCA 58.835 47.619 0.00 0.00 36.35 2.57
514 515 2.758979 ACGGGTCGTTCTGTCTATTCAT 59.241 45.455 0.00 0.00 36.35 2.57
515 516 3.194968 ACGGGTCGTTCTGTCTATTCATT 59.805 43.478 0.00 0.00 36.35 2.57
516 517 3.551890 CGGGTCGTTCTGTCTATTCATTG 59.448 47.826 0.00 0.00 0.00 2.82
517 518 4.504858 GGGTCGTTCTGTCTATTCATTGT 58.495 43.478 0.00 0.00 0.00 2.71
518 519 5.657474 GGGTCGTTCTGTCTATTCATTGTA 58.343 41.667 0.00 0.00 0.00 2.41
519 520 5.519206 GGGTCGTTCTGTCTATTCATTGTAC 59.481 44.000 0.00 0.00 0.00 2.90
520 521 6.331061 GGTCGTTCTGTCTATTCATTGTACT 58.669 40.000 0.00 0.00 0.00 2.73
521 522 6.812160 GGTCGTTCTGTCTATTCATTGTACTT 59.188 38.462 0.00 0.00 0.00 2.24
522 523 7.201444 GGTCGTTCTGTCTATTCATTGTACTTG 60.201 40.741 0.00 0.00 0.00 3.16
523 524 7.328737 GTCGTTCTGTCTATTCATTGTACTTGT 59.671 37.037 0.00 0.00 0.00 3.16
524 525 7.541091 TCGTTCTGTCTATTCATTGTACTTGTC 59.459 37.037 0.00 0.00 0.00 3.18
525 526 7.542477 CGTTCTGTCTATTCATTGTACTTGTCT 59.458 37.037 0.00 0.00 0.00 3.41
526 527 9.209175 GTTCTGTCTATTCATTGTACTTGTCTT 57.791 33.333 0.00 0.00 0.00 3.01
527 528 9.778741 TTCTGTCTATTCATTGTACTTGTCTTT 57.221 29.630 0.00 0.00 0.00 2.52
530 531 9.990360 TGTCTATTCATTGTACTTGTCTTTACA 57.010 29.630 0.00 0.00 0.00 2.41
535 536 8.547967 TTCATTGTACTTGTCTTTACATCCTC 57.452 34.615 0.00 0.00 34.97 3.71
536 537 7.676004 TCATTGTACTTGTCTTTACATCCTCA 58.324 34.615 0.00 0.00 34.97 3.86
537 538 8.154203 TCATTGTACTTGTCTTTACATCCTCAA 58.846 33.333 0.00 0.00 34.97 3.02
538 539 8.950210 CATTGTACTTGTCTTTACATCCTCAAT 58.050 33.333 0.00 0.00 34.97 2.57
566 567 9.753674 TTAATCAGATTTAAGATGTCTTTGGGT 57.246 29.630 0.00 0.00 37.40 4.51
567 568 7.636150 ATCAGATTTAAGATGTCTTTGGGTG 57.364 36.000 0.00 0.00 37.40 4.61
568 569 6.542821 TCAGATTTAAGATGTCTTTGGGTGT 58.457 36.000 0.00 0.00 37.40 4.16
569 570 6.655003 TCAGATTTAAGATGTCTTTGGGTGTC 59.345 38.462 0.00 0.00 37.40 3.67
570 571 6.656693 CAGATTTAAGATGTCTTTGGGTGTCT 59.343 38.462 0.00 0.00 37.40 3.41
571 572 7.175641 CAGATTTAAGATGTCTTTGGGTGTCTT 59.824 37.037 0.00 0.00 37.40 3.01
572 573 7.725844 AGATTTAAGATGTCTTTGGGTGTCTTT 59.274 33.333 0.00 0.00 37.40 2.52
573 574 8.934023 ATTTAAGATGTCTTTGGGTGTCTTTA 57.066 30.769 0.00 0.00 37.40 1.85
574 575 8.934023 TTTAAGATGTCTTTGGGTGTCTTTAT 57.066 30.769 0.00 0.00 37.40 1.40
575 576 8.934023 TTAAGATGTCTTTGGGTGTCTTTATT 57.066 30.769 0.00 0.00 37.40 1.40
577 578 8.934023 AAGATGTCTTTGGGTGTCTTTATTAA 57.066 30.769 0.00 0.00 30.82 1.40
578 579 8.934023 AGATGTCTTTGGGTGTCTTTATTAAA 57.066 30.769 0.00 0.00 0.00 1.52
579 580 9.362151 AGATGTCTTTGGGTGTCTTTATTAAAA 57.638 29.630 0.00 0.00 0.00 1.52
580 581 9.974980 GATGTCTTTGGGTGTCTTTATTAAAAA 57.025 29.630 0.00 0.00 0.00 1.94
581 582 9.981114 ATGTCTTTGGGTGTCTTTATTAAAAAG 57.019 29.630 4.64 4.64 0.00 2.27
582 583 9.191479 TGTCTTTGGGTGTCTTTATTAAAAAGA 57.809 29.630 8.05 8.05 34.20 2.52
603 604 9.605275 AAAAGAAGAAAAGAAAATCTTTCCCTG 57.395 29.630 5.86 0.00 45.19 4.45
604 605 7.904558 AGAAGAAAAGAAAATCTTTCCCTGT 57.095 32.000 5.86 0.00 45.19 4.00
605 606 8.311395 AGAAGAAAAGAAAATCTTTCCCTGTT 57.689 30.769 5.86 0.00 45.19 3.16
606 607 8.417106 AGAAGAAAAGAAAATCTTTCCCTGTTC 58.583 33.333 5.86 5.62 45.19 3.18
607 608 7.055667 AGAAAAGAAAATCTTTCCCTGTTCC 57.944 36.000 5.86 0.00 45.19 3.62
608 609 5.808366 AAAGAAAATCTTTCCCTGTTCCC 57.192 39.130 0.00 0.00 42.60 3.97
609 610 3.779444 AGAAAATCTTTCCCTGTTCCCC 58.221 45.455 0.00 0.00 0.00 4.81
610 611 3.402708 AGAAAATCTTTCCCTGTTCCCCT 59.597 43.478 0.00 0.00 0.00 4.79
611 612 2.907458 AATCTTTCCCTGTTCCCCTG 57.093 50.000 0.00 0.00 0.00 4.45
612 613 2.059756 ATCTTTCCCTGTTCCCCTGA 57.940 50.000 0.00 0.00 0.00 3.86
613 614 1.064825 TCTTTCCCTGTTCCCCTGAC 58.935 55.000 0.00 0.00 0.00 3.51
614 615 0.771127 CTTTCCCTGTTCCCCTGACA 59.229 55.000 0.00 0.00 0.00 3.58
615 616 0.476771 TTTCCCTGTTCCCCTGACAC 59.523 55.000 0.00 0.00 0.00 3.67
616 617 0.696143 TTCCCTGTTCCCCTGACACA 60.696 55.000 0.00 0.00 0.00 3.72
617 618 1.073199 CCCTGTTCCCCTGACACAC 59.927 63.158 0.00 0.00 0.00 3.82
618 619 1.705002 CCCTGTTCCCCTGACACACA 61.705 60.000 0.00 0.00 0.00 3.72
619 620 0.535102 CCTGTTCCCCTGACACACAC 60.535 60.000 0.00 0.00 0.00 3.82
620 621 0.880278 CTGTTCCCCTGACACACACG 60.880 60.000 0.00 0.00 0.00 4.49
621 622 2.110213 TTCCCCTGACACACACGC 59.890 61.111 0.00 0.00 0.00 5.34
622 623 2.439960 TTCCCCTGACACACACGCT 61.440 57.895 0.00 0.00 0.00 5.07
623 624 2.357517 CCCCTGACACACACGCTC 60.358 66.667 0.00 0.00 0.00 5.03
624 625 2.357517 CCCTGACACACACGCTCC 60.358 66.667 0.00 0.00 0.00 4.70
625 626 2.421314 CCTGACACACACGCTCCA 59.579 61.111 0.00 0.00 0.00 3.86
626 627 1.665916 CCTGACACACACGCTCCAG 60.666 63.158 0.00 0.00 0.00 3.86
627 628 1.068083 CTGACACACACGCTCCAGT 59.932 57.895 0.00 0.00 0.00 4.00
628 629 1.217585 CTGACACACACGCTCCAGTG 61.218 60.000 0.00 0.00 46.83 3.66
629 630 2.588877 ACACACACGCTCCAGTGC 60.589 61.111 0.00 0.00 45.45 4.40
630 631 2.280389 CACACACGCTCCAGTGCT 60.280 61.111 0.00 0.00 45.45 4.40
631 632 2.029666 ACACACGCTCCAGTGCTC 59.970 61.111 0.00 0.00 45.45 4.26
632 633 2.740055 CACACGCTCCAGTGCTCC 60.740 66.667 0.00 0.00 45.45 4.70
633 634 4.363990 ACACGCTCCAGTGCTCCG 62.364 66.667 0.00 0.00 45.45 4.63
693 694 3.272042 CCACCCATCCCACCCCAA 61.272 66.667 0.00 0.00 0.00 4.12
722 723 3.834799 CCCGCTCCCGTACACCTC 61.835 72.222 0.00 0.00 0.00 3.85
729 730 1.757340 CCCGTACACCTCCTCTCCC 60.757 68.421 0.00 0.00 0.00 4.30
749 750 2.279918 ACGAGCACCAACCGACAC 60.280 61.111 0.00 0.00 0.00 3.67
860 910 2.027377 CCAGCCTATCCACTCATCATCC 60.027 54.545 0.00 0.00 0.00 3.51
1035 1107 2.444895 GCCCAGATCTCCTCCCGT 60.445 66.667 0.00 0.00 0.00 5.28
1483 1571 1.309347 CTCCTCCTCCTGCTCCTCA 59.691 63.158 0.00 0.00 0.00 3.86
1497 1585 0.401395 TCCTCAAGTCCACCCTGGTT 60.401 55.000 0.00 0.00 39.03 3.67
1544 1632 4.070552 GCTCACCGACCTTCCGCT 62.071 66.667 0.00 0.00 0.00 5.52
1554 1642 2.185350 CTTCCGCTGATGACCGCT 59.815 61.111 0.00 0.00 0.00 5.52
1593 1681 1.852157 ATCGGTCCAGGCAATGTGGT 61.852 55.000 0.00 0.00 36.37 4.16
1594 1682 2.334946 CGGTCCAGGCAATGTGGTG 61.335 63.158 0.00 0.00 36.37 4.17
1614 1714 5.655090 TGGTGTCGAGATAGGAAGAACAATA 59.345 40.000 0.00 0.00 0.00 1.90
1623 1723 8.738645 AGATAGGAAGAACAATAAATGTGTCC 57.261 34.615 0.00 0.00 42.99 4.02
2171 2307 2.079158 CAATATCGCGGATGGAAGCAT 58.921 47.619 6.13 0.00 0.00 3.79
2239 2381 2.827642 GCTGCTGCATCCAGGGAC 60.828 66.667 11.11 0.00 39.54 4.46
2274 2416 1.137086 GCTTGAGCCTCAGGACGAATA 59.863 52.381 8.18 0.00 34.31 1.75
2294 2436 1.909700 ATGGGTGTTTGACGAATGCT 58.090 45.000 0.00 0.00 0.00 3.79
2303 2445 2.779755 TGACGAATGCTGGGTGTTAT 57.220 45.000 0.00 0.00 0.00 1.89
2469 2611 6.918022 TCTTATGCATCAGTTACTGTGTATCG 59.082 38.462 12.41 9.36 32.61 2.92
2470 2612 4.450082 TGCATCAGTTACTGTGTATCGT 57.550 40.909 12.41 0.00 32.61 3.73
2648 2790 0.983378 ATAGACCGCTGCCCCTTCTT 60.983 55.000 0.00 0.00 0.00 2.52
3121 3814 4.541250 TTCCCATCATTCTTAGCCCATT 57.459 40.909 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.222130 ACCATGGTTAAACATCAAGAGAGGT 60.222 40.000 13.00 3.29 41.17 3.85
2 3 5.256474 ACCATGGTTAAACATCAAGAGAGG 58.744 41.667 13.00 2.62 0.00 3.69
3 4 6.540189 CCTACCATGGTTAAACATCAAGAGAG 59.460 42.308 25.38 8.63 0.00 3.20
4 5 6.012858 ACCTACCATGGTTAAACATCAAGAGA 60.013 38.462 25.38 0.00 36.89 3.10
5 6 6.180472 ACCTACCATGGTTAAACATCAAGAG 58.820 40.000 25.38 9.32 36.89 2.85
6 7 6.134535 ACCTACCATGGTTAAACATCAAGA 57.865 37.500 25.38 0.00 36.89 3.02
18 19 2.604139 CACCCAAAAACCTACCATGGT 58.396 47.619 23.55 23.55 43.11 3.55
19 20 1.899142 CCACCCAAAAACCTACCATGG 59.101 52.381 11.19 11.19 0.00 3.66
20 21 2.604139 ACCACCCAAAAACCTACCATG 58.396 47.619 0.00 0.00 0.00 3.66
21 22 2.969262 CAACCACCCAAAAACCTACCAT 59.031 45.455 0.00 0.00 0.00 3.55
22 23 2.024273 TCAACCACCCAAAAACCTACCA 60.024 45.455 0.00 0.00 0.00 3.25
23 24 2.668625 TCAACCACCCAAAAACCTACC 58.331 47.619 0.00 0.00 0.00 3.18
24 25 4.948341 AATCAACCACCCAAAAACCTAC 57.052 40.909 0.00 0.00 0.00 3.18
25 26 5.540719 CCTTAATCAACCACCCAAAAACCTA 59.459 40.000 0.00 0.00 0.00 3.08
26 27 4.346709 CCTTAATCAACCACCCAAAAACCT 59.653 41.667 0.00 0.00 0.00 3.50
27 28 4.504165 CCCTTAATCAACCACCCAAAAACC 60.504 45.833 0.00 0.00 0.00 3.27
28 29 4.504165 CCCCTTAATCAACCACCCAAAAAC 60.504 45.833 0.00 0.00 0.00 2.43
29 30 3.648545 CCCCTTAATCAACCACCCAAAAA 59.351 43.478 0.00 0.00 0.00 1.94
30 31 3.243724 CCCCTTAATCAACCACCCAAAA 58.756 45.455 0.00 0.00 0.00 2.44
31 32 2.493687 CCCCCTTAATCAACCACCCAAA 60.494 50.000 0.00 0.00 0.00 3.28
32 33 1.077993 CCCCCTTAATCAACCACCCAA 59.922 52.381 0.00 0.00 0.00 4.12
33 34 0.707616 CCCCCTTAATCAACCACCCA 59.292 55.000 0.00 0.00 0.00 4.51
34 35 1.004436 TCCCCCTTAATCAACCACCC 58.996 55.000 0.00 0.00 0.00 4.61
35 36 1.920351 TCTCCCCCTTAATCAACCACC 59.080 52.381 0.00 0.00 0.00 4.61
36 37 2.092375 CCTCTCCCCCTTAATCAACCAC 60.092 54.545 0.00 0.00 0.00 4.16
37 38 2.205342 CCTCTCCCCCTTAATCAACCA 58.795 52.381 0.00 0.00 0.00 3.67
38 39 1.495148 CCCTCTCCCCCTTAATCAACC 59.505 57.143 0.00 0.00 0.00 3.77
39 40 2.206223 ACCCTCTCCCCCTTAATCAAC 58.794 52.381 0.00 0.00 0.00 3.18
40 41 2.580783 CAACCCTCTCCCCCTTAATCAA 59.419 50.000 0.00 0.00 0.00 2.57
41 42 2.205342 CAACCCTCTCCCCCTTAATCA 58.795 52.381 0.00 0.00 0.00 2.57
42 43 2.206223 ACAACCCTCTCCCCCTTAATC 58.794 52.381 0.00 0.00 0.00 1.75
43 44 2.378308 ACAACCCTCTCCCCCTTAAT 57.622 50.000 0.00 0.00 0.00 1.40
44 45 2.157973 TGTACAACCCTCTCCCCCTTAA 60.158 50.000 0.00 0.00 0.00 1.85
45 46 1.437945 TGTACAACCCTCTCCCCCTTA 59.562 52.381 0.00 0.00 0.00 2.69
46 47 0.195096 TGTACAACCCTCTCCCCCTT 59.805 55.000 0.00 0.00 0.00 3.95
47 48 0.195096 TTGTACAACCCTCTCCCCCT 59.805 55.000 3.59 0.00 0.00 4.79
48 49 0.618981 CTTGTACAACCCTCTCCCCC 59.381 60.000 3.59 0.00 0.00 5.40
49 50 1.652947 TCTTGTACAACCCTCTCCCC 58.347 55.000 3.59 0.00 0.00 4.81
50 51 2.838202 TGATCTTGTACAACCCTCTCCC 59.162 50.000 3.59 0.00 0.00 4.30
51 52 4.508662 CTTGATCTTGTACAACCCTCTCC 58.491 47.826 3.59 0.00 0.00 3.71
52 53 4.223032 TCCTTGATCTTGTACAACCCTCTC 59.777 45.833 3.59 0.00 0.00 3.20
53 54 4.168101 TCCTTGATCTTGTACAACCCTCT 58.832 43.478 3.59 0.00 0.00 3.69
54 55 4.553330 TCCTTGATCTTGTACAACCCTC 57.447 45.455 3.59 2.58 0.00 4.30
55 56 4.597507 TCTTCCTTGATCTTGTACAACCCT 59.402 41.667 3.59 0.00 0.00 4.34
56 57 4.906618 TCTTCCTTGATCTTGTACAACCC 58.093 43.478 3.59 0.00 0.00 4.11
57 58 5.794894 TCTCTTCCTTGATCTTGTACAACC 58.205 41.667 3.59 0.00 0.00 3.77
58 59 5.872070 CCTCTCTTCCTTGATCTTGTACAAC 59.128 44.000 3.59 0.00 0.00 3.32
59 60 5.046304 CCCTCTCTTCCTTGATCTTGTACAA 60.046 44.000 8.28 8.28 0.00 2.41
60 61 4.467795 CCCTCTCTTCCTTGATCTTGTACA 59.532 45.833 0.00 0.00 0.00 2.90
61 62 4.141824 CCCCTCTCTTCCTTGATCTTGTAC 60.142 50.000 0.00 0.00 0.00 2.90
62 63 4.033709 CCCCTCTCTTCCTTGATCTTGTA 58.966 47.826 0.00 0.00 0.00 2.41
63 64 2.843113 CCCCTCTCTTCCTTGATCTTGT 59.157 50.000 0.00 0.00 0.00 3.16
64 65 2.172293 CCCCCTCTCTTCCTTGATCTTG 59.828 54.545 0.00 0.00 0.00 3.02
65 66 2.046447 TCCCCCTCTCTTCCTTGATCTT 59.954 50.000 0.00 0.00 0.00 2.40
66 67 1.653918 TCCCCCTCTCTTCCTTGATCT 59.346 52.381 0.00 0.00 0.00 2.75
67 68 1.765904 GTCCCCCTCTCTTCCTTGATC 59.234 57.143 0.00 0.00 0.00 2.92
68 69 1.886422 GTCCCCCTCTCTTCCTTGAT 58.114 55.000 0.00 0.00 0.00 2.57
69 70 0.614979 CGTCCCCCTCTCTTCCTTGA 60.615 60.000 0.00 0.00 0.00 3.02
70 71 0.614979 TCGTCCCCCTCTCTTCCTTG 60.615 60.000 0.00 0.00 0.00 3.61
71 72 0.324830 CTCGTCCCCCTCTCTTCCTT 60.325 60.000 0.00 0.00 0.00 3.36
72 73 1.308326 CTCGTCCCCCTCTCTTCCT 59.692 63.158 0.00 0.00 0.00 3.36
73 74 1.758906 CCTCGTCCCCCTCTCTTCC 60.759 68.421 0.00 0.00 0.00 3.46
74 75 0.615261 AACCTCGTCCCCCTCTCTTC 60.615 60.000 0.00 0.00 0.00 2.87
75 76 0.178900 AAACCTCGTCCCCCTCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
76 77 0.178900 AAAACCTCGTCCCCCTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
77 78 0.691332 AAAAACCTCGTCCCCCTCTC 59.309 55.000 0.00 0.00 0.00 3.20
78 79 2.864208 AAAAACCTCGTCCCCCTCT 58.136 52.632 0.00 0.00 0.00 3.69
125 126 6.036470 GGCATCTTAAATCAAGGTAAGCAAC 58.964 40.000 0.00 0.00 34.76 4.17
126 127 5.714333 TGGCATCTTAAATCAAGGTAAGCAA 59.286 36.000 0.00 0.00 34.76 3.91
127 128 5.260424 TGGCATCTTAAATCAAGGTAAGCA 58.740 37.500 0.00 0.00 34.76 3.91
128 129 5.835113 TGGCATCTTAAATCAAGGTAAGC 57.165 39.130 0.00 0.00 34.76 3.09
129 130 6.547141 TCCATGGCATCTTAAATCAAGGTAAG 59.453 38.462 6.96 0.00 34.76 2.34
130 131 6.430864 TCCATGGCATCTTAAATCAAGGTAA 58.569 36.000 6.96 0.00 34.76 2.85
131 132 6.012337 TCCATGGCATCTTAAATCAAGGTA 57.988 37.500 6.96 0.00 34.76 3.08
132 133 4.870636 TCCATGGCATCTTAAATCAAGGT 58.129 39.130 6.96 0.00 34.76 3.50
133 134 5.537295 TCATCCATGGCATCTTAAATCAAGG 59.463 40.000 6.96 0.00 34.76 3.61
134 135 6.294564 CCTCATCCATGGCATCTTAAATCAAG 60.295 42.308 6.96 0.00 35.38 3.02
135 136 5.537295 CCTCATCCATGGCATCTTAAATCAA 59.463 40.000 6.96 0.00 0.00 2.57
136 137 5.074804 CCTCATCCATGGCATCTTAAATCA 58.925 41.667 6.96 0.00 0.00 2.57
137 138 5.319453 TCCTCATCCATGGCATCTTAAATC 58.681 41.667 6.96 0.00 0.00 2.17
138 139 5.329191 TCCTCATCCATGGCATCTTAAAT 57.671 39.130 6.96 0.00 0.00 1.40
139 140 4.794311 TCCTCATCCATGGCATCTTAAA 57.206 40.909 6.96 0.00 0.00 1.52
140 141 4.722220 CTTCCTCATCCATGGCATCTTAA 58.278 43.478 6.96 0.00 0.00 1.85
141 142 3.497405 GCTTCCTCATCCATGGCATCTTA 60.497 47.826 6.96 0.00 0.00 2.10
142 143 2.752154 GCTTCCTCATCCATGGCATCTT 60.752 50.000 6.96 0.00 0.00 2.40
143 144 1.202903 GCTTCCTCATCCATGGCATCT 60.203 52.381 6.96 0.00 0.00 2.90
144 145 1.202903 AGCTTCCTCATCCATGGCATC 60.203 52.381 6.96 0.00 0.00 3.91
145 146 0.851469 AGCTTCCTCATCCATGGCAT 59.149 50.000 6.96 0.00 0.00 4.40
146 147 0.627451 AAGCTTCCTCATCCATGGCA 59.373 50.000 6.96 0.00 0.00 4.92
147 148 1.407979 CAAAGCTTCCTCATCCATGGC 59.592 52.381 6.96 0.00 0.00 4.40
148 149 1.407979 GCAAAGCTTCCTCATCCATGG 59.592 52.381 4.97 4.97 0.00 3.66
149 150 1.407979 GGCAAAGCTTCCTCATCCATG 59.592 52.381 0.00 0.00 0.00 3.66
150 151 1.287146 AGGCAAAGCTTCCTCATCCAT 59.713 47.619 0.00 0.00 0.00 3.41
151 152 0.700564 AGGCAAAGCTTCCTCATCCA 59.299 50.000 0.00 0.00 0.00 3.41
152 153 1.101331 CAGGCAAAGCTTCCTCATCC 58.899 55.000 0.00 0.00 0.00 3.51
153 154 1.101331 CCAGGCAAAGCTTCCTCATC 58.899 55.000 0.00 0.00 0.00 2.92
154 155 0.407139 ACCAGGCAAAGCTTCCTCAT 59.593 50.000 0.00 0.00 0.00 2.90
155 156 0.185901 AACCAGGCAAAGCTTCCTCA 59.814 50.000 0.00 0.00 0.00 3.86
156 157 0.884514 GAACCAGGCAAAGCTTCCTC 59.115 55.000 0.00 0.00 0.00 3.71
157 158 0.480252 AGAACCAGGCAAAGCTTCCT 59.520 50.000 0.00 0.00 0.00 3.36
158 159 1.270826 GAAGAACCAGGCAAAGCTTCC 59.729 52.381 0.00 0.00 0.00 3.46
159 160 1.068954 CGAAGAACCAGGCAAAGCTTC 60.069 52.381 0.00 0.00 0.00 3.86
160 161 0.954452 CGAAGAACCAGGCAAAGCTT 59.046 50.000 0.00 0.00 0.00 3.74
161 162 0.890996 CCGAAGAACCAGGCAAAGCT 60.891 55.000 0.00 0.00 0.00 3.74
162 163 1.581447 CCGAAGAACCAGGCAAAGC 59.419 57.895 0.00 0.00 0.00 3.51
163 164 0.537371 ACCCGAAGAACCAGGCAAAG 60.537 55.000 0.00 0.00 0.00 2.77
164 165 0.536460 GACCCGAAGAACCAGGCAAA 60.536 55.000 0.00 0.00 0.00 3.68
165 166 1.072505 GACCCGAAGAACCAGGCAA 59.927 57.895 0.00 0.00 0.00 4.52
166 167 1.841556 AGACCCGAAGAACCAGGCA 60.842 57.895 0.00 0.00 0.00 4.75
167 168 1.376037 CAGACCCGAAGAACCAGGC 60.376 63.158 0.00 0.00 0.00 4.85
168 169 0.905357 ATCAGACCCGAAGAACCAGG 59.095 55.000 0.00 0.00 0.00 4.45
169 170 2.770164 AATCAGACCCGAAGAACCAG 57.230 50.000 0.00 0.00 0.00 4.00
170 171 2.500098 CCTAATCAGACCCGAAGAACCA 59.500 50.000 0.00 0.00 0.00 3.67
171 172 2.764572 TCCTAATCAGACCCGAAGAACC 59.235 50.000 0.00 0.00 0.00 3.62
172 173 3.181474 CCTCCTAATCAGACCCGAAGAAC 60.181 52.174 0.00 0.00 0.00 3.01
173 174 3.031736 CCTCCTAATCAGACCCGAAGAA 58.968 50.000 0.00 0.00 0.00 2.52
174 175 2.243994 TCCTCCTAATCAGACCCGAAGA 59.756 50.000 0.00 0.00 0.00 2.87
175 176 2.667470 TCCTCCTAATCAGACCCGAAG 58.333 52.381 0.00 0.00 0.00 3.79
176 177 2.840640 TCCTCCTAATCAGACCCGAA 57.159 50.000 0.00 0.00 0.00 4.30
177 178 2.243994 TCTTCCTCCTAATCAGACCCGA 59.756 50.000 0.00 0.00 0.00 5.14
178 179 2.667470 TCTTCCTCCTAATCAGACCCG 58.333 52.381 0.00 0.00 0.00 5.28
179 180 3.389656 CCTTCTTCCTCCTAATCAGACCC 59.610 52.174 0.00 0.00 0.00 4.46
180 181 4.034410 ACCTTCTTCCTCCTAATCAGACC 58.966 47.826 0.00 0.00 0.00 3.85
181 182 5.187967 TGAACCTTCTTCCTCCTAATCAGAC 59.812 44.000 0.00 0.00 0.00 3.51
182 183 5.342017 TGAACCTTCTTCCTCCTAATCAGA 58.658 41.667 0.00 0.00 0.00 3.27
183 184 5.396213 CCTGAACCTTCTTCCTCCTAATCAG 60.396 48.000 0.00 0.00 0.00 2.90
184 185 4.471386 CCTGAACCTTCTTCCTCCTAATCA 59.529 45.833 0.00 0.00 0.00 2.57
185 186 4.684757 GCCTGAACCTTCTTCCTCCTAATC 60.685 50.000 0.00 0.00 0.00 1.75
186 187 3.201045 GCCTGAACCTTCTTCCTCCTAAT 59.799 47.826 0.00 0.00 0.00 1.73
187 188 2.572104 GCCTGAACCTTCTTCCTCCTAA 59.428 50.000 0.00 0.00 0.00 2.69
188 189 2.188817 GCCTGAACCTTCTTCCTCCTA 58.811 52.381 0.00 0.00 0.00 2.94
189 190 0.988063 GCCTGAACCTTCTTCCTCCT 59.012 55.000 0.00 0.00 0.00 3.69
190 191 0.391793 CGCCTGAACCTTCTTCCTCC 60.392 60.000 0.00 0.00 0.00 4.30
191 192 0.321996 ACGCCTGAACCTTCTTCCTC 59.678 55.000 0.00 0.00 0.00 3.71
192 193 0.035458 CACGCCTGAACCTTCTTCCT 59.965 55.000 0.00 0.00 0.00 3.36
193 194 0.955919 CCACGCCTGAACCTTCTTCC 60.956 60.000 0.00 0.00 0.00 3.46
194 195 0.955919 CCCACGCCTGAACCTTCTTC 60.956 60.000 0.00 0.00 0.00 2.87
195 196 1.073199 CCCACGCCTGAACCTTCTT 59.927 57.895 0.00 0.00 0.00 2.52
196 197 2.750350 CCCACGCCTGAACCTTCT 59.250 61.111 0.00 0.00 0.00 2.85
197 198 3.056328 GCCCACGCCTGAACCTTC 61.056 66.667 0.00 0.00 0.00 3.46
198 199 3.133365 AAGCCCACGCCTGAACCTT 62.133 57.895 0.00 0.00 34.57 3.50
199 200 3.570212 AAGCCCACGCCTGAACCT 61.570 61.111 0.00 0.00 34.57 3.50
200 201 3.365265 CAAGCCCACGCCTGAACC 61.365 66.667 0.00 0.00 34.57 3.62
201 202 4.043200 GCAAGCCCACGCCTGAAC 62.043 66.667 0.00 0.00 34.57 3.18
202 203 3.790416 AAGCAAGCCCACGCCTGAA 62.790 57.895 0.00 0.00 34.57 3.02
203 204 4.269523 AAGCAAGCCCACGCCTGA 62.270 61.111 0.00 0.00 34.57 3.86
204 205 4.047059 CAAGCAAGCCCACGCCTG 62.047 66.667 0.00 0.00 34.57 4.85
205 206 4.586235 ACAAGCAAGCCCACGCCT 62.586 61.111 0.00 0.00 34.57 5.52
206 207 4.043200 GACAAGCAAGCCCACGCC 62.043 66.667 0.00 0.00 34.57 5.68
207 208 2.348605 TTTGACAAGCAAGCCCACGC 62.349 55.000 0.00 0.00 37.87 5.34
208 209 0.102120 TTTTGACAAGCAAGCCCACG 59.898 50.000 0.00 0.00 37.87 4.94
209 210 2.307934 TTTTTGACAAGCAAGCCCAC 57.692 45.000 0.00 0.00 37.87 4.61
225 226 3.181472 ACGTTACGACCCTCTGTCTTTTT 60.181 43.478 13.03 0.00 42.13 1.94
226 227 2.363359 ACGTTACGACCCTCTGTCTTTT 59.637 45.455 13.03 0.00 42.13 2.27
227 228 1.959282 ACGTTACGACCCTCTGTCTTT 59.041 47.619 13.03 0.00 42.13 2.52
228 229 1.268899 CACGTTACGACCCTCTGTCTT 59.731 52.381 13.03 0.00 42.13 3.01
229 230 0.879765 CACGTTACGACCCTCTGTCT 59.120 55.000 13.03 0.00 42.13 3.41
230 231 0.877071 TCACGTTACGACCCTCTGTC 59.123 55.000 13.03 0.00 40.81 3.51
231 232 0.879765 CTCACGTTACGACCCTCTGT 59.120 55.000 13.03 0.00 0.00 3.41
232 233 1.130749 CTCTCACGTTACGACCCTCTG 59.869 57.143 13.03 0.00 0.00 3.35
233 234 1.451067 CTCTCACGTTACGACCCTCT 58.549 55.000 13.03 0.00 0.00 3.69
234 235 0.450983 CCTCTCACGTTACGACCCTC 59.549 60.000 13.03 0.00 0.00 4.30
235 236 0.037303 TCCTCTCACGTTACGACCCT 59.963 55.000 13.03 0.00 0.00 4.34
236 237 0.883833 TTCCTCTCACGTTACGACCC 59.116 55.000 13.03 0.00 0.00 4.46
237 238 1.808945 TCTTCCTCTCACGTTACGACC 59.191 52.381 13.03 0.00 0.00 4.79
238 239 3.188048 TCTTCTTCCTCTCACGTTACGAC 59.812 47.826 13.03 0.00 0.00 4.34
239 240 3.405831 TCTTCTTCCTCTCACGTTACGA 58.594 45.455 13.03 0.00 0.00 3.43
240 241 3.826236 TCTTCTTCCTCTCACGTTACG 57.174 47.619 2.19 2.19 0.00 3.18
241 242 4.425520 CCATCTTCTTCCTCTCACGTTAC 58.574 47.826 0.00 0.00 0.00 2.50
242 243 3.447586 CCCATCTTCTTCCTCTCACGTTA 59.552 47.826 0.00 0.00 0.00 3.18
243 244 2.234908 CCCATCTTCTTCCTCTCACGTT 59.765 50.000 0.00 0.00 0.00 3.99
244 245 1.827969 CCCATCTTCTTCCTCTCACGT 59.172 52.381 0.00 0.00 0.00 4.49
245 246 2.103373 TCCCATCTTCTTCCTCTCACG 58.897 52.381 0.00 0.00 0.00 4.35
246 247 3.369997 GGTTCCCATCTTCTTCCTCTCAC 60.370 52.174 0.00 0.00 0.00 3.51
247 248 2.840651 GGTTCCCATCTTCTTCCTCTCA 59.159 50.000 0.00 0.00 0.00 3.27
248 249 2.840651 TGGTTCCCATCTTCTTCCTCTC 59.159 50.000 0.00 0.00 0.00 3.20
249 250 2.843113 CTGGTTCCCATCTTCTTCCTCT 59.157 50.000 0.00 0.00 30.82 3.69
250 251 2.840651 TCTGGTTCCCATCTTCTTCCTC 59.159 50.000 0.00 0.00 30.82 3.71
251 252 2.573915 GTCTGGTTCCCATCTTCTTCCT 59.426 50.000 0.00 0.00 30.82 3.36
252 253 2.678190 CGTCTGGTTCCCATCTTCTTCC 60.678 54.545 0.00 0.00 30.82 3.46
253 254 2.622436 CGTCTGGTTCCCATCTTCTTC 58.378 52.381 0.00 0.00 30.82 2.87
254 255 1.279271 CCGTCTGGTTCCCATCTTCTT 59.721 52.381 0.00 0.00 30.82 2.52
255 256 0.905357 CCGTCTGGTTCCCATCTTCT 59.095 55.000 0.00 0.00 30.82 2.85
256 257 0.107654 CCCGTCTGGTTCCCATCTTC 60.108 60.000 0.00 0.00 30.82 2.87
257 258 0.546747 TCCCGTCTGGTTCCCATCTT 60.547 55.000 0.00 0.00 30.82 2.40
258 259 0.326618 ATCCCGTCTGGTTCCCATCT 60.327 55.000 0.00 0.00 30.82 2.90
259 260 0.179045 CATCCCGTCTGGTTCCCATC 60.179 60.000 0.00 0.00 30.82 3.51
260 261 0.620410 TCATCCCGTCTGGTTCCCAT 60.620 55.000 0.00 0.00 30.82 4.00
261 262 1.229368 TCATCCCGTCTGGTTCCCA 60.229 57.895 0.00 0.00 34.77 4.37
262 263 1.522569 CTCATCCCGTCTGGTTCCC 59.477 63.158 0.00 0.00 34.77 3.97
263 264 1.522569 CCTCATCCCGTCTGGTTCC 59.477 63.158 0.00 0.00 34.77 3.62
264 265 0.976073 TCCCTCATCCCGTCTGGTTC 60.976 60.000 0.00 0.00 34.77 3.62
265 266 0.978146 CTCCCTCATCCCGTCTGGTT 60.978 60.000 0.00 0.00 34.77 3.67
266 267 1.381872 CTCCCTCATCCCGTCTGGT 60.382 63.158 0.00 0.00 34.77 4.00
267 268 1.075970 TCTCCCTCATCCCGTCTGG 60.076 63.158 0.00 0.00 0.00 3.86
268 269 1.729470 CGTCTCCCTCATCCCGTCTG 61.729 65.000 0.00 0.00 0.00 3.51
269 270 1.454111 CGTCTCCCTCATCCCGTCT 60.454 63.158 0.00 0.00 0.00 4.18
270 271 1.321074 AACGTCTCCCTCATCCCGTC 61.321 60.000 0.00 0.00 0.00 4.79
271 272 1.305046 AACGTCTCCCTCATCCCGT 60.305 57.895 0.00 0.00 0.00 5.28
272 273 1.141881 CAACGTCTCCCTCATCCCG 59.858 63.158 0.00 0.00 0.00 5.14
273 274 1.522569 CCAACGTCTCCCTCATCCC 59.477 63.158 0.00 0.00 0.00 3.85
274 275 1.153349 GCCAACGTCTCCCTCATCC 60.153 63.158 0.00 0.00 0.00 3.51
275 276 1.153349 GGCCAACGTCTCCCTCATC 60.153 63.158 0.00 0.00 0.00 2.92
276 277 1.903877 CTGGCCAACGTCTCCCTCAT 61.904 60.000 7.01 0.00 0.00 2.90
277 278 2.525629 TGGCCAACGTCTCCCTCA 60.526 61.111 0.61 0.00 0.00 3.86
278 279 1.827399 TTCTGGCCAACGTCTCCCTC 61.827 60.000 7.01 0.00 0.00 4.30
279 280 1.841556 TTCTGGCCAACGTCTCCCT 60.842 57.895 7.01 0.00 0.00 4.20
280 281 1.671379 GTTCTGGCCAACGTCTCCC 60.671 63.158 7.01 0.00 0.00 4.30
281 282 2.027625 CGTTCTGGCCAACGTCTCC 61.028 63.158 19.64 0.00 43.41 3.71
282 283 3.550656 CGTTCTGGCCAACGTCTC 58.449 61.111 19.64 1.62 43.41 3.36
287 288 2.051345 CAACGCGTTCTGGCCAAC 60.051 61.111 23.92 1.22 0.00 3.77
288 289 3.283684 CCAACGCGTTCTGGCCAA 61.284 61.111 23.92 0.00 0.00 4.52
289 290 4.555709 ACCAACGCGTTCTGGCCA 62.556 61.111 25.98 4.71 36.03 5.36
290 291 4.025401 CACCAACGCGTTCTGGCC 62.025 66.667 25.98 0.00 36.03 5.36
291 292 4.683334 GCACCAACGCGTTCTGGC 62.683 66.667 25.98 22.03 36.03 4.85
292 293 2.972505 AGCACCAACGCGTTCTGG 60.973 61.111 24.78 24.78 38.77 3.86
293 294 2.249309 CAGCACCAACGCGTTCTG 59.751 61.111 23.92 21.39 36.85 3.02
294 295 2.972505 CCAGCACCAACGCGTTCT 60.973 61.111 23.92 13.55 36.85 3.01
295 296 4.025401 CCCAGCACCAACGCGTTC 62.025 66.667 23.92 11.16 36.85 3.95
296 297 4.555709 TCCCAGCACCAACGCGTT 62.556 61.111 20.79 20.79 36.85 4.84
297 298 4.555709 TTCCCAGCACCAACGCGT 62.556 61.111 5.58 5.58 36.85 6.01
298 299 4.025401 GTTCCCAGCACCAACGCG 62.025 66.667 3.53 3.53 36.85 6.01
299 300 4.025401 CGTTCCCAGCACCAACGC 62.025 66.667 0.00 0.00 36.78 4.84
300 301 3.353836 CCGTTCCCAGCACCAACG 61.354 66.667 0.00 0.00 42.02 4.10
301 302 2.112297 TCCGTTCCCAGCACCAAC 59.888 61.111 0.00 0.00 0.00 3.77
302 303 1.122632 TAGTCCGTTCCCAGCACCAA 61.123 55.000 0.00 0.00 0.00 3.67
303 304 1.534476 TAGTCCGTTCCCAGCACCA 60.534 57.895 0.00 0.00 0.00 4.17
304 305 1.218316 CTAGTCCGTTCCCAGCACC 59.782 63.158 0.00 0.00 0.00 5.01
305 306 1.218316 CCTAGTCCGTTCCCAGCAC 59.782 63.158 0.00 0.00 0.00 4.40
306 307 0.970937 CTCCTAGTCCGTTCCCAGCA 60.971 60.000 0.00 0.00 0.00 4.41
307 308 1.677637 CCTCCTAGTCCGTTCCCAGC 61.678 65.000 0.00 0.00 0.00 4.85
308 309 1.677637 GCCTCCTAGTCCGTTCCCAG 61.678 65.000 0.00 0.00 0.00 4.45
309 310 1.684734 GCCTCCTAGTCCGTTCCCA 60.685 63.158 0.00 0.00 0.00 4.37
310 311 2.783288 CGCCTCCTAGTCCGTTCCC 61.783 68.421 0.00 0.00 0.00 3.97
311 312 2.806237 CGCCTCCTAGTCCGTTCC 59.194 66.667 0.00 0.00 0.00 3.62
312 313 2.104530 GCGCCTCCTAGTCCGTTC 59.895 66.667 0.00 0.00 0.00 3.95
313 314 3.823330 CGCGCCTCCTAGTCCGTT 61.823 66.667 0.00 0.00 0.00 4.44
315 316 4.554363 CACGCGCCTCCTAGTCCG 62.554 72.222 5.73 0.00 0.00 4.79
316 317 4.208686 CCACGCGCCTCCTAGTCC 62.209 72.222 5.73 0.00 0.00 3.85
317 318 4.208686 CCCACGCGCCTCCTAGTC 62.209 72.222 5.73 0.00 0.00 2.59
318 319 3.650298 TACCCACGCGCCTCCTAGT 62.650 63.158 5.73 0.00 0.00 2.57
319 320 2.831742 TACCCACGCGCCTCCTAG 60.832 66.667 5.73 0.00 0.00 3.02
320 321 2.831742 CTACCCACGCGCCTCCTA 60.832 66.667 5.73 0.00 0.00 2.94
327 328 4.143333 CTGGTCCCTACCCACGCG 62.143 72.222 3.53 3.53 46.16 6.01
328 329 3.782443 CCTGGTCCCTACCCACGC 61.782 72.222 0.00 0.00 46.16 5.34
329 330 3.782443 GCCTGGTCCCTACCCACG 61.782 72.222 0.00 0.00 46.16 4.94
330 331 3.782443 CGCCTGGTCCCTACCCAC 61.782 72.222 0.00 0.00 46.16 4.61
331 332 2.866523 CTACGCCTGGTCCCTACCCA 62.867 65.000 0.00 0.00 46.16 4.51
332 333 2.042639 TACGCCTGGTCCCTACCC 60.043 66.667 0.00 0.00 46.16 3.69
333 334 2.132352 CCTACGCCTGGTCCCTACC 61.132 68.421 0.00 0.00 46.98 3.18
334 335 2.794028 GCCTACGCCTGGTCCCTAC 61.794 68.421 0.00 0.00 0.00 3.18
335 336 2.443390 GCCTACGCCTGGTCCCTA 60.443 66.667 0.00 0.00 0.00 3.53
338 339 4.814294 CACGCCTACGCCTGGTCC 62.814 72.222 0.00 0.00 45.53 4.46
339 340 4.814294 CCACGCCTACGCCTGGTC 62.814 72.222 0.00 0.00 45.53 4.02
344 345 3.887335 TTTCACCCACGCCTACGCC 62.887 63.158 0.00 0.00 45.53 5.68
345 346 2.357760 TTTCACCCACGCCTACGC 60.358 61.111 0.00 0.00 45.53 4.42
347 348 2.038837 GCCTTTCACCCACGCCTAC 61.039 63.158 0.00 0.00 0.00 3.18
348 349 2.349755 GCCTTTCACCCACGCCTA 59.650 61.111 0.00 0.00 0.00 3.93
351 352 4.025401 CACGCCTTTCACCCACGC 62.025 66.667 0.00 0.00 0.00 5.34
352 353 4.025401 GCACGCCTTTCACCCACG 62.025 66.667 0.00 0.00 0.00 4.94
353 354 4.025401 CGCACGCCTTTCACCCAC 62.025 66.667 0.00 0.00 0.00 4.61
354 355 2.457743 ATACGCACGCCTTTCACCCA 62.458 55.000 0.00 0.00 0.00 4.51
355 356 1.743995 ATACGCACGCCTTTCACCC 60.744 57.895 0.00 0.00 0.00 4.61
356 357 1.423845 CATACGCACGCCTTTCACC 59.576 57.895 0.00 0.00 0.00 4.02
357 358 1.017177 TCCATACGCACGCCTTTCAC 61.017 55.000 0.00 0.00 0.00 3.18
358 359 0.107897 ATCCATACGCACGCCTTTCA 60.108 50.000 0.00 0.00 0.00 2.69
359 360 0.304705 CATCCATACGCACGCCTTTC 59.695 55.000 0.00 0.00 0.00 2.62
360 361 0.392461 ACATCCATACGCACGCCTTT 60.392 50.000 0.00 0.00 0.00 3.11
361 362 0.392461 AACATCCATACGCACGCCTT 60.392 50.000 0.00 0.00 0.00 4.35
362 363 0.392461 AAACATCCATACGCACGCCT 60.392 50.000 0.00 0.00 0.00 5.52
363 364 0.027586 GAAACATCCATACGCACGCC 59.972 55.000 0.00 0.00 0.00 5.68
364 365 0.027586 GGAAACATCCATACGCACGC 59.972 55.000 0.00 0.00 0.00 5.34
365 366 1.651987 AGGAAACATCCATACGCACG 58.348 50.000 0.00 0.00 0.00 5.34
366 367 4.434713 AAAAGGAAACATCCATACGCAC 57.565 40.909 0.00 0.00 0.00 5.34
367 368 4.378978 CGAAAAAGGAAACATCCATACGCA 60.379 41.667 0.00 0.00 0.00 5.24
368 369 4.095610 CGAAAAAGGAAACATCCATACGC 58.904 43.478 0.00 0.00 0.00 4.42
369 370 4.155280 ACCGAAAAAGGAAACATCCATACG 59.845 41.667 0.00 0.00 34.73 3.06
370 371 5.638596 ACCGAAAAAGGAAACATCCATAC 57.361 39.130 0.00 0.00 34.73 2.39
371 372 5.536916 ACAACCGAAAAAGGAAACATCCATA 59.463 36.000 0.00 0.00 34.73 2.74
372 373 4.343814 ACAACCGAAAAAGGAAACATCCAT 59.656 37.500 0.00 0.00 34.73 3.41
373 374 3.702045 ACAACCGAAAAAGGAAACATCCA 59.298 39.130 0.00 0.00 34.73 3.41
374 375 4.037565 AGACAACCGAAAAAGGAAACATCC 59.962 41.667 0.00 0.00 34.73 3.51
375 376 5.183014 AGACAACCGAAAAAGGAAACATC 57.817 39.130 0.00 0.00 34.73 3.06
376 377 5.126384 TCAAGACAACCGAAAAAGGAAACAT 59.874 36.000 0.00 0.00 34.73 2.71
377 378 4.459685 TCAAGACAACCGAAAAAGGAAACA 59.540 37.500 0.00 0.00 34.73 2.83
378 379 4.989044 TCAAGACAACCGAAAAAGGAAAC 58.011 39.130 0.00 0.00 34.73 2.78
379 380 5.358442 TGATCAAGACAACCGAAAAAGGAAA 59.642 36.000 0.00 0.00 34.73 3.13
380 381 4.884744 TGATCAAGACAACCGAAAAAGGAA 59.115 37.500 0.00 0.00 34.73 3.36
381 382 4.274950 GTGATCAAGACAACCGAAAAAGGA 59.725 41.667 0.00 0.00 34.73 3.36
382 383 4.537015 GTGATCAAGACAACCGAAAAAGG 58.463 43.478 0.00 0.00 37.30 3.11
383 384 4.211389 CGTGATCAAGACAACCGAAAAAG 58.789 43.478 2.01 0.00 0.00 2.27
384 385 3.547214 GCGTGATCAAGACAACCGAAAAA 60.547 43.478 13.18 0.00 0.00 1.94
385 386 2.032377 GCGTGATCAAGACAACCGAAAA 60.032 45.455 13.18 0.00 0.00 2.29
386 387 1.529438 GCGTGATCAAGACAACCGAAA 59.471 47.619 13.18 0.00 0.00 3.46
387 388 1.144969 GCGTGATCAAGACAACCGAA 58.855 50.000 13.18 0.00 0.00 4.30
388 389 0.032815 TGCGTGATCAAGACAACCGA 59.967 50.000 13.18 0.00 0.00 4.69
389 390 0.163788 GTGCGTGATCAAGACAACCG 59.836 55.000 13.18 4.06 0.00 4.44
390 391 1.225855 TGTGCGTGATCAAGACAACC 58.774 50.000 13.18 0.93 0.00 3.77
391 392 2.287915 AGTTGTGCGTGATCAAGACAAC 59.712 45.455 28.17 28.17 44.34 3.32
392 393 2.560504 AGTTGTGCGTGATCAAGACAA 58.439 42.857 13.18 15.22 0.00 3.18
393 394 2.238942 AGTTGTGCGTGATCAAGACA 57.761 45.000 13.18 10.57 0.00 3.41
394 395 3.318017 AGTAGTTGTGCGTGATCAAGAC 58.682 45.455 13.18 8.26 0.00 3.01
395 396 3.575630 GAGTAGTTGTGCGTGATCAAGA 58.424 45.455 13.18 0.00 0.00 3.02
396 397 2.668457 GGAGTAGTTGTGCGTGATCAAG 59.332 50.000 4.06 4.06 0.00 3.02
397 398 2.299013 AGGAGTAGTTGTGCGTGATCAA 59.701 45.455 0.00 0.00 0.00 2.57
398 399 1.893137 AGGAGTAGTTGTGCGTGATCA 59.107 47.619 0.00 0.00 0.00 2.92
399 400 2.656560 AGGAGTAGTTGTGCGTGATC 57.343 50.000 0.00 0.00 0.00 2.92
400 401 3.006967 AGAAAGGAGTAGTTGTGCGTGAT 59.993 43.478 0.00 0.00 0.00 3.06
401 402 2.364324 AGAAAGGAGTAGTTGTGCGTGA 59.636 45.455 0.00 0.00 0.00 4.35
402 403 2.755650 AGAAAGGAGTAGTTGTGCGTG 58.244 47.619 0.00 0.00 0.00 5.34
403 404 3.470645 AAGAAAGGAGTAGTTGTGCGT 57.529 42.857 0.00 0.00 0.00 5.24
404 405 4.813296 AAAAGAAAGGAGTAGTTGTGCG 57.187 40.909 0.00 0.00 0.00 5.34
423 424 6.539173 TGTAATAGTGAAGCTCTCCCAAAAA 58.461 36.000 0.00 0.00 0.00 1.94
424 425 6.121776 TGTAATAGTGAAGCTCTCCCAAAA 57.878 37.500 0.00 0.00 0.00 2.44
425 426 5.755409 TGTAATAGTGAAGCTCTCCCAAA 57.245 39.130 0.00 0.00 0.00 3.28
426 427 5.755409 TTGTAATAGTGAAGCTCTCCCAA 57.245 39.130 0.00 0.00 0.00 4.12
427 428 5.755409 TTTGTAATAGTGAAGCTCTCCCA 57.245 39.130 0.00 0.00 0.00 4.37
428 429 5.529060 CCATTTGTAATAGTGAAGCTCTCCC 59.471 44.000 0.00 0.00 0.00 4.30
429 430 5.529060 CCCATTTGTAATAGTGAAGCTCTCC 59.471 44.000 0.00 0.00 0.00 3.71
430 431 5.008118 GCCCATTTGTAATAGTGAAGCTCTC 59.992 44.000 0.00 0.00 0.00 3.20
431 432 4.884164 GCCCATTTGTAATAGTGAAGCTCT 59.116 41.667 0.00 0.00 0.00 4.09
432 433 4.260784 CGCCCATTTGTAATAGTGAAGCTC 60.261 45.833 0.00 0.00 0.00 4.09
433 434 3.627577 CGCCCATTTGTAATAGTGAAGCT 59.372 43.478 0.00 0.00 0.00 3.74
434 435 3.377172 ACGCCCATTTGTAATAGTGAAGC 59.623 43.478 0.00 0.00 0.00 3.86
435 436 4.035208 GGACGCCCATTTGTAATAGTGAAG 59.965 45.833 0.00 0.00 0.00 3.02
436 437 3.942748 GGACGCCCATTTGTAATAGTGAA 59.057 43.478 0.00 0.00 0.00 3.18
437 438 3.537580 GGACGCCCATTTGTAATAGTGA 58.462 45.455 0.00 0.00 0.00 3.41
438 439 2.286833 CGGACGCCCATTTGTAATAGTG 59.713 50.000 0.00 0.00 0.00 2.74
439 440 2.557317 CGGACGCCCATTTGTAATAGT 58.443 47.619 0.00 0.00 0.00 2.12
440 441 1.871039 CCGGACGCCCATTTGTAATAG 59.129 52.381 0.00 0.00 0.00 1.73
441 442 1.485480 TCCGGACGCCCATTTGTAATA 59.515 47.619 0.00 0.00 0.00 0.98
442 443 0.253610 TCCGGACGCCCATTTGTAAT 59.746 50.000 0.00 0.00 0.00 1.89
443 444 0.036448 TTCCGGACGCCCATTTGTAA 59.964 50.000 1.83 0.00 0.00 2.41
444 445 0.391927 CTTCCGGACGCCCATTTGTA 60.392 55.000 1.83 0.00 0.00 2.41
445 446 1.674322 CTTCCGGACGCCCATTTGT 60.674 57.895 1.83 0.00 0.00 2.83
446 447 1.644786 GACTTCCGGACGCCCATTTG 61.645 60.000 1.83 0.00 0.00 2.32
447 448 1.376812 GACTTCCGGACGCCCATTT 60.377 57.895 1.83 0.00 0.00 2.32
448 449 2.267961 GACTTCCGGACGCCCATT 59.732 61.111 1.83 0.00 0.00 3.16
449 450 4.143333 CGACTTCCGGACGCCCAT 62.143 66.667 1.83 0.00 33.91 4.00
458 459 1.025812 ATCTGACTAGCCGACTTCCG 58.974 55.000 0.00 0.00 38.18 4.30
459 460 2.427453 TGAATCTGACTAGCCGACTTCC 59.573 50.000 0.00 0.00 0.00 3.46
460 461 3.784701 TGAATCTGACTAGCCGACTTC 57.215 47.619 0.00 0.00 0.00 3.01
461 462 4.744795 AATGAATCTGACTAGCCGACTT 57.255 40.909 0.00 0.00 0.00 3.01
462 463 4.744795 AAATGAATCTGACTAGCCGACT 57.255 40.909 0.00 0.00 0.00 4.18
463 464 7.484035 AAATAAATGAATCTGACTAGCCGAC 57.516 36.000 0.00 0.00 0.00 4.79
464 465 7.552687 ACAAAATAAATGAATCTGACTAGCCGA 59.447 33.333 0.00 0.00 0.00 5.54
465 466 7.697691 ACAAAATAAATGAATCTGACTAGCCG 58.302 34.615 0.00 0.00 0.00 5.52
471 472 9.878599 CCCGTATACAAAATAAATGAATCTGAC 57.121 33.333 3.32 0.00 0.00 3.51
472 473 9.621629 ACCCGTATACAAAATAAATGAATCTGA 57.378 29.630 3.32 0.00 0.00 3.27
473 474 9.878599 GACCCGTATACAAAATAAATGAATCTG 57.121 33.333 3.32 0.00 0.00 2.90
474 475 8.770828 CGACCCGTATACAAAATAAATGAATCT 58.229 33.333 3.32 0.00 0.00 2.40
475 476 8.553696 ACGACCCGTATACAAAATAAATGAATC 58.446 33.333 3.32 0.00 38.73 2.52
476 477 8.441312 ACGACCCGTATACAAAATAAATGAAT 57.559 30.769 3.32 0.00 38.73 2.57
477 478 7.846644 ACGACCCGTATACAAAATAAATGAA 57.153 32.000 3.32 0.00 38.73 2.57
478 479 7.765360 AGAACGACCCGTATACAAAATAAATGA 59.235 33.333 3.32 0.00 39.99 2.57
479 480 7.849026 CAGAACGACCCGTATACAAAATAAATG 59.151 37.037 3.32 0.00 39.99 2.32
480 481 7.550196 ACAGAACGACCCGTATACAAAATAAAT 59.450 33.333 3.32 0.00 39.99 1.40
481 482 6.873076 ACAGAACGACCCGTATACAAAATAAA 59.127 34.615 3.32 0.00 39.99 1.40
482 483 6.397272 ACAGAACGACCCGTATACAAAATAA 58.603 36.000 3.32 0.00 39.99 1.40
483 484 5.964758 ACAGAACGACCCGTATACAAAATA 58.035 37.500 3.32 0.00 39.99 1.40
484 485 4.824289 ACAGAACGACCCGTATACAAAAT 58.176 39.130 3.32 0.00 39.99 1.82
485 486 4.022068 AGACAGAACGACCCGTATACAAAA 60.022 41.667 3.32 0.00 39.99 2.44
486 487 3.507233 AGACAGAACGACCCGTATACAAA 59.493 43.478 3.32 0.00 39.99 2.83
487 488 3.084039 AGACAGAACGACCCGTATACAA 58.916 45.455 3.32 0.00 39.99 2.41
488 489 2.715046 AGACAGAACGACCCGTATACA 58.285 47.619 3.32 0.00 39.99 2.29
489 490 5.008019 TGAATAGACAGAACGACCCGTATAC 59.992 44.000 0.00 0.00 39.99 1.47
490 491 5.125356 TGAATAGACAGAACGACCCGTATA 58.875 41.667 0.00 0.00 39.99 1.47
491 492 3.949754 TGAATAGACAGAACGACCCGTAT 59.050 43.478 0.00 0.00 39.99 3.06
492 493 3.346315 TGAATAGACAGAACGACCCGTA 58.654 45.455 0.00 0.00 39.99 4.02
493 494 2.165167 TGAATAGACAGAACGACCCGT 58.835 47.619 0.00 0.00 43.97 5.28
494 495 2.933495 TGAATAGACAGAACGACCCG 57.067 50.000 0.00 0.00 0.00 5.28
495 496 4.504858 ACAATGAATAGACAGAACGACCC 58.495 43.478 0.00 0.00 0.00 4.46
496 497 6.331061 AGTACAATGAATAGACAGAACGACC 58.669 40.000 0.00 0.00 0.00 4.79
497 498 7.328737 ACAAGTACAATGAATAGACAGAACGAC 59.671 37.037 5.77 0.00 0.00 4.34
498 499 7.375834 ACAAGTACAATGAATAGACAGAACGA 58.624 34.615 5.77 0.00 0.00 3.85
499 500 7.542477 AGACAAGTACAATGAATAGACAGAACG 59.458 37.037 5.77 0.00 0.00 3.95
500 501 8.764524 AGACAAGTACAATGAATAGACAGAAC 57.235 34.615 5.77 0.00 0.00 3.01
501 502 9.778741 AAAGACAAGTACAATGAATAGACAGAA 57.221 29.630 5.77 0.00 0.00 3.02
504 505 9.990360 TGTAAAGACAAGTACAATGAATAGACA 57.010 29.630 5.77 2.52 30.68 3.41
509 510 9.167311 GAGGATGTAAAGACAAGTACAATGAAT 57.833 33.333 5.77 0.00 39.59 2.57
510 511 8.154203 TGAGGATGTAAAGACAAGTACAATGAA 58.846 33.333 5.77 0.00 39.59 2.57
511 512 7.676004 TGAGGATGTAAAGACAAGTACAATGA 58.324 34.615 5.77 0.00 39.59 2.57
512 513 7.905604 TGAGGATGTAAAGACAAGTACAATG 57.094 36.000 0.00 0.00 39.59 2.82
540 541 9.753674 ACCCAAAGACATCTTAAATCTGATTAA 57.246 29.630 2.85 0.00 34.61 1.40
541 542 9.177608 CACCCAAAGACATCTTAAATCTGATTA 57.822 33.333 2.85 0.00 34.61 1.75
542 543 7.671398 ACACCCAAAGACATCTTAAATCTGATT 59.329 33.333 0.00 0.00 34.61 2.57
543 544 7.177878 ACACCCAAAGACATCTTAAATCTGAT 58.822 34.615 0.00 0.00 34.61 2.90
544 545 6.542821 ACACCCAAAGACATCTTAAATCTGA 58.457 36.000 0.00 0.00 34.61 3.27
545 546 6.656693 AGACACCCAAAGACATCTTAAATCTG 59.343 38.462 0.00 0.00 34.61 2.90
546 547 6.784031 AGACACCCAAAGACATCTTAAATCT 58.216 36.000 0.00 0.00 34.61 2.40
547 548 7.454260 AAGACACCCAAAGACATCTTAAATC 57.546 36.000 0.00 0.00 34.61 2.17
548 549 7.839680 AAAGACACCCAAAGACATCTTAAAT 57.160 32.000 0.00 0.00 34.61 1.40
549 550 8.934023 ATAAAGACACCCAAAGACATCTTAAA 57.066 30.769 0.00 0.00 34.61 1.52
550 551 8.934023 AATAAAGACACCCAAAGACATCTTAA 57.066 30.769 0.00 0.00 34.61 1.85
552 553 8.934023 TTAATAAAGACACCCAAAGACATCTT 57.066 30.769 0.00 0.00 37.91 2.40
553 554 8.934023 TTTAATAAAGACACCCAAAGACATCT 57.066 30.769 0.00 0.00 0.00 2.90
554 555 9.974980 TTTTTAATAAAGACACCCAAAGACATC 57.025 29.630 0.00 0.00 0.00 3.06
555 556 9.981114 CTTTTTAATAAAGACACCCAAAGACAT 57.019 29.630 0.00 0.00 0.00 3.06
556 557 9.191479 TCTTTTTAATAAAGACACCCAAAGACA 57.809 29.630 8.05 0.00 31.86 3.41
577 578 9.605275 CAGGGAAAGATTTTCTTTTCTTCTTTT 57.395 29.630 7.92 0.00 45.85 2.27
578 579 8.762645 ACAGGGAAAGATTTTCTTTTCTTCTTT 58.237 29.630 7.92 0.00 45.85 2.52
579 580 8.311395 ACAGGGAAAGATTTTCTTTTCTTCTT 57.689 30.769 7.92 0.00 45.85 2.52
580 581 7.904558 ACAGGGAAAGATTTTCTTTTCTTCT 57.095 32.000 7.92 0.00 45.85 2.85
581 582 7.653713 GGAACAGGGAAAGATTTTCTTTTCTTC 59.346 37.037 7.92 4.89 45.85 2.87
582 583 7.419057 GGGAACAGGGAAAGATTTTCTTTTCTT 60.419 37.037 7.92 0.00 45.85 2.52
583 584 6.042093 GGGAACAGGGAAAGATTTTCTTTTCT 59.958 38.462 7.92 5.15 45.85 2.52
584 585 6.223852 GGGAACAGGGAAAGATTTTCTTTTC 58.776 40.000 4.16 2.28 45.85 2.29
585 586 5.071788 GGGGAACAGGGAAAGATTTTCTTTT 59.928 40.000 4.16 0.00 45.85 2.27
587 588 4.140686 AGGGGAACAGGGAAAGATTTTCTT 60.141 41.667 2.03 0.00 38.59 2.52
588 589 3.402708 AGGGGAACAGGGAAAGATTTTCT 59.597 43.478 2.03 0.00 0.00 2.52
589 590 3.511540 CAGGGGAACAGGGAAAGATTTTC 59.488 47.826 0.00 0.00 0.00 2.29
590 591 3.142028 TCAGGGGAACAGGGAAAGATTTT 59.858 43.478 0.00 0.00 0.00 1.82
591 592 2.721906 TCAGGGGAACAGGGAAAGATTT 59.278 45.455 0.00 0.00 0.00 2.17
592 593 2.041755 GTCAGGGGAACAGGGAAAGATT 59.958 50.000 0.00 0.00 0.00 2.40
593 594 1.636003 GTCAGGGGAACAGGGAAAGAT 59.364 52.381 0.00 0.00 0.00 2.40
594 595 1.064825 GTCAGGGGAACAGGGAAAGA 58.935 55.000 0.00 0.00 0.00 2.52
595 596 0.771127 TGTCAGGGGAACAGGGAAAG 59.229 55.000 0.00 0.00 0.00 2.62
596 597 0.476771 GTGTCAGGGGAACAGGGAAA 59.523 55.000 0.00 0.00 0.00 3.13
597 598 0.696143 TGTGTCAGGGGAACAGGGAA 60.696 55.000 0.00 0.00 0.00 3.97
598 599 1.074090 TGTGTCAGGGGAACAGGGA 60.074 57.895 0.00 0.00 0.00 4.20
599 600 1.073199 GTGTGTCAGGGGAACAGGG 59.927 63.158 0.00 0.00 0.00 4.45
600 601 0.535102 GTGTGTGTCAGGGGAACAGG 60.535 60.000 0.00 0.00 0.00 4.00
601 602 0.880278 CGTGTGTGTCAGGGGAACAG 60.880 60.000 0.00 0.00 0.00 3.16
602 603 1.145156 CGTGTGTGTCAGGGGAACA 59.855 57.895 0.00 0.00 0.00 3.18
603 604 2.251642 GCGTGTGTGTCAGGGGAAC 61.252 63.158 0.00 0.00 33.17 3.62
604 605 2.110213 GCGTGTGTGTCAGGGGAA 59.890 61.111 0.00 0.00 33.17 3.97
605 606 2.842462 AGCGTGTGTGTCAGGGGA 60.842 61.111 0.00 0.00 33.17 4.81
606 607 2.357517 GAGCGTGTGTGTCAGGGG 60.358 66.667 0.00 0.00 33.17 4.79
607 608 2.357517 GGAGCGTGTGTGTCAGGG 60.358 66.667 0.00 0.00 33.17 4.45
608 609 1.665916 CTGGAGCGTGTGTGTCAGG 60.666 63.158 0.00 0.00 35.34 3.86
609 610 1.068083 ACTGGAGCGTGTGTGTCAG 59.932 57.895 0.00 0.00 0.00 3.51
610 611 1.227234 CACTGGAGCGTGTGTGTCA 60.227 57.895 0.00 0.00 0.00 3.58
611 612 2.598632 GCACTGGAGCGTGTGTGTC 61.599 63.158 0.00 0.00 37.24 3.67
612 613 2.588877 GCACTGGAGCGTGTGTGT 60.589 61.111 0.00 0.00 37.24 3.72
613 614 2.280389 AGCACTGGAGCGTGTGTG 60.280 61.111 0.00 0.00 40.15 3.82
614 615 2.029666 GAGCACTGGAGCGTGTGT 59.970 61.111 0.00 0.00 40.15 3.72
615 616 2.740055 GGAGCACTGGAGCGTGTG 60.740 66.667 0.00 0.00 40.15 3.82
616 617 4.363990 CGGAGCACTGGAGCGTGT 62.364 66.667 0.00 0.00 40.15 4.49
687 688 3.310860 GATGGCGTCGTCTTGGGGT 62.311 63.158 0.92 0.00 0.00 4.95
722 723 4.803426 GTGCTCGTGCGGGAGAGG 62.803 72.222 7.92 0.00 43.34 3.69
860 910 4.441792 CCTTTTCTTTCCCCTTTTGTGTG 58.558 43.478 0.00 0.00 0.00 3.82
1335 1407 0.524816 GCGCCTTGTCAAGCATGATG 60.525 55.000 7.09 0.00 38.01 3.07
1380 1458 2.860735 CTCGCCTGTAGACACATTAAGC 59.139 50.000 0.00 0.00 33.14 3.09
1483 1571 1.844130 GGACAACCAGGGTGGACTT 59.156 57.895 10.04 0.00 40.96 3.01
1497 1585 2.349755 GGGTTAAGCAGGCGGACA 59.650 61.111 7.03 0.00 0.00 4.02
1544 1632 0.034089 TCTCAGGAGAGCGGTCATCA 60.034 55.000 18.15 0.00 41.81 3.07
1593 1681 8.258007 ACATTTATTGTTCTTCCTATCTCGACA 58.742 33.333 0.00 0.00 33.74 4.35
1594 1682 8.543774 CACATTTATTGTTCTTCCTATCTCGAC 58.456 37.037 0.00 0.00 36.00 4.20
1614 1714 2.671619 CCCACGCCGGACACATTT 60.672 61.111 5.05 0.00 36.56 2.32
1623 1723 4.025401 GCAACAAGACCCACGCCG 62.025 66.667 0.00 0.00 0.00 6.46
2171 2307 2.502947 ACTGCCTCAATCAGACTGCATA 59.497 45.455 0.00 0.00 35.61 3.14
2274 2416 2.030007 CAGCATTCGTCAAACACCCATT 60.030 45.455 0.00 0.00 0.00 3.16
2294 2436 7.067372 CAGAATCATAGCAAAGAATAACACCCA 59.933 37.037 0.00 0.00 0.00 4.51
2303 2445 7.120285 CCAGAGAAACAGAATCATAGCAAAGAA 59.880 37.037 0.00 0.00 0.00 2.52
2415 2557 1.626654 GAATCACGGCAGACACCACG 61.627 60.000 0.00 0.00 0.00 4.94
2469 2611 9.489084 TTTGAGGTACATATGATAATGCTGTAC 57.511 33.333 10.38 5.82 40.75 2.90
3201 3894 6.737720 AATCACTCTATGCTTCAGGTATCA 57.262 37.500 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.