Multiple sequence alignment - TraesCS5A01G430500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G430500 chr5A 100.000 2642 0 0 1 2642 614354344 614356985 0.000000e+00 4879.0
1 TraesCS5A01G430500 chr5A 86.047 1032 65 46 656 1643 613466006 613465010 0.000000e+00 1035.0
2 TraesCS5A01G430500 chr5A 94.379 338 19 0 1313 1650 613471127 613470790 1.080000e-143 520.0
3 TraesCS5A01G430500 chr5A 80.556 612 55 32 619 1181 613471817 613471221 1.890000e-111 412.0
4 TraesCS5A01G430500 chr5D 87.315 1285 76 24 505 1750 491727096 491728332 0.000000e+00 1389.0
5 TraesCS5A01G430500 chr5D 86.280 1035 80 37 647 1643 490977690 490976680 0.000000e+00 1068.0
6 TraesCS5A01G430500 chr5D 92.447 331 19 1 1313 1643 490981883 490981559 3.980000e-128 468.0
7 TraesCS5A01G430500 chr5D 80.456 614 57 30 633 1204 490982552 490981960 6.810000e-111 411.0
8 TraesCS5A01G430500 chr5D 76.000 675 90 41 1769 2420 491785567 491786192 1.550000e-72 283.0
9 TraesCS5A01G430500 chr5B 83.988 1043 95 41 642 1643 605609184 605608173 0.000000e+00 935.0
10 TraesCS5A01G430500 chr5B 91.742 666 35 9 1310 1963 606829521 606830178 0.000000e+00 907.0
11 TraesCS5A01G430500 chr5B 83.516 1001 89 28 693 1643 605532015 605531041 0.000000e+00 865.0
12 TraesCS5A01G430500 chr5B 84.388 711 41 23 505 1182 606828754 606829427 3.710000e-178 634.0
13 TraesCS5A01G430500 chr5B 91.124 338 24 1 1313 1650 605626975 605626644 1.110000e-123 453.0
14 TraesCS5A01G430500 chr5B 86.098 410 35 11 789 1182 605627480 605627077 3.140000e-114 422.0
15 TraesCS5A01G430500 chr5B 96.522 230 7 1 2043 2271 606832362 606832591 1.920000e-101 379.0
16 TraesCS5A01G430500 chr5B 95.745 141 5 1 2500 2639 606833599 606833739 2.650000e-55 226.0
17 TraesCS5A01G430500 chr5B 94.928 138 5 2 2269 2404 606833442 606833579 5.730000e-52 215.0
18 TraesCS5A01G430500 chr1D 83.235 507 31 14 686 1181 408612862 408613325 1.460000e-112 416.0
19 TraesCS5A01G430500 chr1D 82.407 216 13 7 686 895 408744017 408744213 5.850000e-37 165.0
20 TraesCS5A01G430500 chr1B 82.101 514 47 14 686 1181 550035273 550035759 5.300000e-107 398.0
21 TraesCS5A01G430500 chr7A 90.909 143 13 0 250 392 508642930 508643072 2.680000e-45 193.0
22 TraesCS5A01G430500 chr7A 92.800 125 9 0 256 380 256013826 256013702 5.810000e-42 182.0
23 TraesCS5A01G430500 chr7A 91.538 130 11 0 252 381 670345078 670345207 2.090000e-41 180.0
24 TraesCS5A01G430500 chr1A 93.651 126 8 0 256 381 188150017 188149892 3.470000e-44 189.0
25 TraesCS5A01G430500 chr1A 92.969 128 9 0 256 383 247312046 247311919 1.250000e-43 187.0
26 TraesCS5A01G430500 chr1A 93.600 125 8 0 256 380 544457809 544457933 1.250000e-43 187.0
27 TraesCS5A01G430500 chr1A 91.473 129 11 0 256 384 490473143 490473015 7.510000e-41 178.0
28 TraesCS5A01G430500 chr3A 92.800 125 9 0 256 380 343230555 343230431 5.810000e-42 182.0
29 TraesCS5A01G430500 chr4A 90.370 135 12 1 253 387 614227581 614227714 2.700000e-40 176.0
30 TraesCS5A01G430500 chr3B 95.349 43 2 0 415 457 431571522 431571564 4.720000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G430500 chr5A 614354344 614356985 2641 False 4879.0 4879 100.000000 1 2642 1 chr5A.!!$F1 2641
1 TraesCS5A01G430500 chr5A 613465010 613466006 996 True 1035.0 1035 86.047000 656 1643 1 chr5A.!!$R1 987
2 TraesCS5A01G430500 chr5A 613470790 613471817 1027 True 466.0 520 87.467500 619 1650 2 chr5A.!!$R2 1031
3 TraesCS5A01G430500 chr5D 491727096 491728332 1236 False 1389.0 1389 87.315000 505 1750 1 chr5D.!!$F1 1245
4 TraesCS5A01G430500 chr5D 490976680 490982552 5872 True 649.0 1068 86.394333 633 1643 3 chr5D.!!$R1 1010
5 TraesCS5A01G430500 chr5D 491785567 491786192 625 False 283.0 283 76.000000 1769 2420 1 chr5D.!!$F2 651
6 TraesCS5A01G430500 chr5B 605608173 605609184 1011 True 935.0 935 83.988000 642 1643 1 chr5B.!!$R2 1001
7 TraesCS5A01G430500 chr5B 605531041 605532015 974 True 865.0 865 83.516000 693 1643 1 chr5B.!!$R1 950
8 TraesCS5A01G430500 chr5B 606828754 606833739 4985 False 472.2 907 92.665000 505 2639 5 chr5B.!!$F1 2134
9 TraesCS5A01G430500 chr5B 605626644 605627480 836 True 437.5 453 88.611000 789 1650 2 chr5B.!!$R3 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 384 0.033796 TGGAACGGAGGGAGTACGAT 60.034 55.0 0.0 0.0 0.0 3.73 F
525 526 0.035317 TGATGTTCTTCTGCCACGCT 59.965 50.0 0.0 0.0 0.0 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 6444 0.321346 TGAGCTTCATGCCGTTCTCA 59.679 50.000 0.00 0.0 44.23 3.27 R
1947 6951 3.005472 TGTCCTCAGGTGAACTAGTTTCG 59.995 47.826 10.02 0.0 36.97 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.986833 ACTCAACAAAATTAATCAAAAAGTTGC 57.013 25.926 0.00 0.00 35.19 4.17
66 67 8.833231 ATATTCTCAACAACTAATATGGACGG 57.167 34.615 0.00 0.00 0.00 4.79
67 68 4.439057 TCTCAACAACTAATATGGACGGC 58.561 43.478 0.00 0.00 0.00 5.68
68 69 3.537580 TCAACAACTAATATGGACGGCC 58.462 45.455 0.00 0.00 0.00 6.13
77 78 3.602103 TGGACGGCCAAATCATGC 58.398 55.556 8.12 0.00 42.49 4.06
78 79 1.001020 TGGACGGCCAAATCATGCT 60.001 52.632 8.12 0.00 42.49 3.79
79 80 0.611618 TGGACGGCCAAATCATGCTT 60.612 50.000 8.12 0.00 42.49 3.91
80 81 0.532115 GGACGGCCAAATCATGCTTT 59.468 50.000 0.00 0.00 0.00 3.51
81 82 1.066929 GGACGGCCAAATCATGCTTTT 60.067 47.619 0.00 0.00 0.00 2.27
82 83 2.165437 GGACGGCCAAATCATGCTTTTA 59.835 45.455 0.00 0.00 0.00 1.52
83 84 3.367910 GGACGGCCAAATCATGCTTTTAA 60.368 43.478 0.00 0.00 0.00 1.52
84 85 4.432712 GACGGCCAAATCATGCTTTTAAT 58.567 39.130 2.24 0.00 0.00 1.40
85 86 4.432712 ACGGCCAAATCATGCTTTTAATC 58.567 39.130 2.24 0.00 0.00 1.75
86 87 3.486841 CGGCCAAATCATGCTTTTAATCG 59.513 43.478 2.24 0.00 0.00 3.34
87 88 4.681744 GGCCAAATCATGCTTTTAATCGA 58.318 39.130 0.00 0.00 0.00 3.59
88 89 4.504097 GGCCAAATCATGCTTTTAATCGAC 59.496 41.667 0.00 0.00 0.00 4.20
89 90 5.101628 GCCAAATCATGCTTTTAATCGACA 58.898 37.500 0.00 0.00 0.00 4.35
90 91 5.004726 GCCAAATCATGCTTTTAATCGACAC 59.995 40.000 0.00 0.00 0.00 3.67
91 92 5.516339 CCAAATCATGCTTTTAATCGACACC 59.484 40.000 0.00 0.00 0.00 4.16
92 93 4.900635 ATCATGCTTTTAATCGACACCC 57.099 40.909 0.00 0.00 0.00 4.61
93 94 3.680490 TCATGCTTTTAATCGACACCCA 58.320 40.909 0.00 0.00 0.00 4.51
94 95 4.269183 TCATGCTTTTAATCGACACCCAT 58.731 39.130 0.00 0.00 0.00 4.00
95 96 5.432645 TCATGCTTTTAATCGACACCCATA 58.567 37.500 0.00 0.00 0.00 2.74
96 97 5.883115 TCATGCTTTTAATCGACACCCATAA 59.117 36.000 0.00 0.00 0.00 1.90
97 98 6.545666 TCATGCTTTTAATCGACACCCATAAT 59.454 34.615 0.00 0.00 0.00 1.28
98 99 6.371809 TGCTTTTAATCGACACCCATAATC 57.628 37.500 0.00 0.00 0.00 1.75
99 100 5.007234 TGCTTTTAATCGACACCCATAATCG 59.993 40.000 0.00 0.00 37.20 3.34
101 102 6.238266 GCTTTTAATCGACACCCATAATCGAA 60.238 38.462 0.00 0.00 46.90 3.71
102 103 6.838198 TTTAATCGACACCCATAATCGAAG 57.162 37.500 0.00 0.00 46.90 3.79
103 104 2.882927 TCGACACCCATAATCGAAGG 57.117 50.000 0.00 0.00 41.61 3.46
104 105 1.202486 TCGACACCCATAATCGAAGGC 60.202 52.381 0.00 0.00 41.61 4.35
105 106 1.202533 CGACACCCATAATCGAAGGCT 60.203 52.381 0.00 0.00 38.10 4.58
106 107 2.035449 CGACACCCATAATCGAAGGCTA 59.965 50.000 0.00 0.00 38.10 3.93
107 108 3.491964 CGACACCCATAATCGAAGGCTAA 60.492 47.826 0.00 0.00 38.10 3.09
108 109 4.448210 GACACCCATAATCGAAGGCTAAA 58.552 43.478 0.00 0.00 0.00 1.85
109 110 5.048846 ACACCCATAATCGAAGGCTAAAT 57.951 39.130 0.00 0.00 0.00 1.40
110 111 5.063880 ACACCCATAATCGAAGGCTAAATC 58.936 41.667 0.00 0.00 0.00 2.17
111 112 4.152402 CACCCATAATCGAAGGCTAAATCG 59.848 45.833 0.70 0.70 40.31 3.34
118 119 2.607635 TCGAAGGCTAAATCGAATGTGC 59.392 45.455 7.28 0.00 44.32 4.57
119 120 2.597505 CGAAGGCTAAATCGAATGTGCG 60.598 50.000 0.86 0.00 41.43 5.34
120 121 2.309528 AGGCTAAATCGAATGTGCGA 57.690 45.000 0.00 0.00 45.22 5.10
121 122 2.627945 AGGCTAAATCGAATGTGCGAA 58.372 42.857 0.00 0.00 44.22 4.70
122 123 2.609459 AGGCTAAATCGAATGTGCGAAG 59.391 45.455 0.00 0.00 44.22 3.79
123 124 2.351726 GGCTAAATCGAATGTGCGAAGT 59.648 45.455 0.00 0.00 44.22 3.01
124 125 3.181510 GGCTAAATCGAATGTGCGAAGTT 60.182 43.478 0.00 0.00 44.22 2.66
125 126 4.403453 GCTAAATCGAATGTGCGAAGTTT 58.597 39.130 0.00 0.00 44.22 2.66
126 127 5.446741 GGCTAAATCGAATGTGCGAAGTTTA 60.447 40.000 0.00 0.00 44.22 2.01
127 128 6.019152 GCTAAATCGAATGTGCGAAGTTTAA 58.981 36.000 0.00 0.00 44.22 1.52
128 129 6.521821 GCTAAATCGAATGTGCGAAGTTTAAA 59.478 34.615 0.00 0.00 44.22 1.52
129 130 7.218204 GCTAAATCGAATGTGCGAAGTTTAAAT 59.782 33.333 0.00 0.00 44.22 1.40
130 131 7.492614 AAATCGAATGTGCGAAGTTTAAATC 57.507 32.000 0.00 0.00 44.22 2.17
131 132 4.965062 TCGAATGTGCGAAGTTTAAATCC 58.035 39.130 0.00 0.00 37.35 3.01
132 133 4.452795 TCGAATGTGCGAAGTTTAAATCCA 59.547 37.500 0.00 0.00 37.35 3.41
133 134 4.788100 CGAATGTGCGAAGTTTAAATCCAG 59.212 41.667 0.00 0.00 0.00 3.86
134 135 3.552604 TGTGCGAAGTTTAAATCCAGC 57.447 42.857 0.00 0.00 0.00 4.85
135 136 2.227865 TGTGCGAAGTTTAAATCCAGCC 59.772 45.455 0.00 0.00 0.00 4.85
136 137 2.488153 GTGCGAAGTTTAAATCCAGCCT 59.512 45.455 0.00 0.00 0.00 4.58
137 138 3.687698 GTGCGAAGTTTAAATCCAGCCTA 59.312 43.478 0.00 0.00 0.00 3.93
138 139 3.687698 TGCGAAGTTTAAATCCAGCCTAC 59.312 43.478 0.00 0.00 0.00 3.18
139 140 3.687698 GCGAAGTTTAAATCCAGCCTACA 59.312 43.478 0.00 0.00 0.00 2.74
140 141 4.335594 GCGAAGTTTAAATCCAGCCTACAT 59.664 41.667 0.00 0.00 0.00 2.29
141 142 5.504173 GCGAAGTTTAAATCCAGCCTACATC 60.504 44.000 0.00 0.00 0.00 3.06
142 143 5.276868 CGAAGTTTAAATCCAGCCTACATCG 60.277 44.000 0.00 0.00 0.00 3.84
143 144 5.353394 AGTTTAAATCCAGCCTACATCGA 57.647 39.130 0.00 0.00 0.00 3.59
144 145 5.930135 AGTTTAAATCCAGCCTACATCGAT 58.070 37.500 0.00 0.00 0.00 3.59
145 146 5.992217 AGTTTAAATCCAGCCTACATCGATC 59.008 40.000 0.00 0.00 0.00 3.69
146 147 2.732412 AATCCAGCCTACATCGATCG 57.268 50.000 9.36 9.36 0.00 3.69
147 148 0.244994 ATCCAGCCTACATCGATCGC 59.755 55.000 11.09 0.00 0.00 4.58
148 149 0.823769 TCCAGCCTACATCGATCGCT 60.824 55.000 11.09 0.00 0.00 4.93
149 150 0.881796 CCAGCCTACATCGATCGCTA 59.118 55.000 11.09 0.00 0.00 4.26
150 151 1.269723 CCAGCCTACATCGATCGCTAA 59.730 52.381 11.09 0.00 0.00 3.09
151 152 2.288213 CCAGCCTACATCGATCGCTAAA 60.288 50.000 11.09 0.00 0.00 1.85
152 153 3.579709 CAGCCTACATCGATCGCTAAAT 58.420 45.455 11.09 0.00 0.00 1.40
153 154 3.610242 CAGCCTACATCGATCGCTAAATC 59.390 47.826 11.09 0.00 0.00 2.17
154 155 3.255888 AGCCTACATCGATCGCTAAATCA 59.744 43.478 11.09 0.00 0.00 2.57
155 156 3.610242 GCCTACATCGATCGCTAAATCAG 59.390 47.826 11.09 0.93 0.00 2.90
156 157 4.169508 CCTACATCGATCGCTAAATCAGG 58.830 47.826 11.09 6.40 0.00 3.86
157 158 3.735237 ACATCGATCGCTAAATCAGGT 57.265 42.857 11.09 0.00 0.00 4.00
158 159 4.848562 ACATCGATCGCTAAATCAGGTA 57.151 40.909 11.09 0.00 0.00 3.08
159 160 4.799678 ACATCGATCGCTAAATCAGGTAG 58.200 43.478 11.09 0.00 0.00 3.18
160 161 4.519350 ACATCGATCGCTAAATCAGGTAGA 59.481 41.667 11.09 0.00 0.00 2.59
161 162 5.184096 ACATCGATCGCTAAATCAGGTAGAT 59.816 40.000 11.09 0.00 39.09 1.98
162 163 6.374613 ACATCGATCGCTAAATCAGGTAGATA 59.625 38.462 11.09 0.00 35.39 1.98
163 164 6.424176 TCGATCGCTAAATCAGGTAGATAG 57.576 41.667 11.09 0.00 35.39 2.08
164 165 5.354513 TCGATCGCTAAATCAGGTAGATAGG 59.645 44.000 11.09 0.00 35.39 2.57
165 166 5.354513 CGATCGCTAAATCAGGTAGATAGGA 59.645 44.000 0.26 0.00 35.39 2.94
166 167 6.038825 CGATCGCTAAATCAGGTAGATAGGAT 59.961 42.308 0.26 0.00 35.39 3.24
167 168 6.516739 TCGCTAAATCAGGTAGATAGGATG 57.483 41.667 0.00 0.00 35.39 3.51
168 169 6.010850 TCGCTAAATCAGGTAGATAGGATGT 58.989 40.000 0.00 0.00 35.39 3.06
169 170 7.173032 TCGCTAAATCAGGTAGATAGGATGTA 58.827 38.462 0.00 0.00 35.39 2.29
170 171 7.120873 TCGCTAAATCAGGTAGATAGGATGTAC 59.879 40.741 0.00 0.00 35.39 2.90
171 172 7.121463 CGCTAAATCAGGTAGATAGGATGTACT 59.879 40.741 0.00 0.00 35.39 2.73
172 173 8.247562 GCTAAATCAGGTAGATAGGATGTACTG 58.752 40.741 0.00 0.00 35.39 2.74
173 174 6.597832 AATCAGGTAGATAGGATGTACTGC 57.402 41.667 0.00 0.00 35.39 4.40
174 175 5.326283 TCAGGTAGATAGGATGTACTGCT 57.674 43.478 0.00 0.00 0.00 4.24
175 176 6.449830 TCAGGTAGATAGGATGTACTGCTA 57.550 41.667 0.00 0.00 31.73 3.49
176 177 7.033782 TCAGGTAGATAGGATGTACTGCTAT 57.966 40.000 6.21 6.21 40.84 2.97
177 178 7.471041 TCAGGTAGATAGGATGTACTGCTATT 58.529 38.462 0.00 0.00 38.50 1.73
178 179 7.394641 TCAGGTAGATAGGATGTACTGCTATTG 59.605 40.741 0.00 0.00 38.50 1.90
179 180 7.394641 CAGGTAGATAGGATGTACTGCTATTGA 59.605 40.741 0.00 0.00 38.50 2.57
180 181 7.613801 AGGTAGATAGGATGTACTGCTATTGAG 59.386 40.741 0.00 0.00 38.50 3.02
181 182 7.612244 GGTAGATAGGATGTACTGCTATTGAGA 59.388 40.741 0.00 0.00 38.50 3.27
182 183 9.015367 GTAGATAGGATGTACTGCTATTGAGAA 57.985 37.037 0.00 0.00 38.50 2.87
183 184 8.484214 AGATAGGATGTACTGCTATTGAGAAA 57.516 34.615 0.00 0.00 38.50 2.52
184 185 8.584157 AGATAGGATGTACTGCTATTGAGAAAG 58.416 37.037 0.00 0.00 38.50 2.62
185 186 6.552445 AGGATGTACTGCTATTGAGAAAGT 57.448 37.500 0.00 0.00 0.00 2.66
186 187 6.344500 AGGATGTACTGCTATTGAGAAAGTG 58.656 40.000 0.00 0.00 0.00 3.16
187 188 6.070538 AGGATGTACTGCTATTGAGAAAGTGT 60.071 38.462 0.00 0.00 0.00 3.55
188 189 6.595716 GGATGTACTGCTATTGAGAAAGTGTT 59.404 38.462 0.00 0.00 0.00 3.32
189 190 6.785488 TGTACTGCTATTGAGAAAGTGTTG 57.215 37.500 0.00 0.00 0.00 3.33
190 191 5.700832 TGTACTGCTATTGAGAAAGTGTTGG 59.299 40.000 0.00 0.00 0.00 3.77
191 192 3.503748 ACTGCTATTGAGAAAGTGTTGGC 59.496 43.478 0.00 0.00 0.00 4.52
192 193 2.483877 TGCTATTGAGAAAGTGTTGGCG 59.516 45.455 0.00 0.00 0.00 5.69
193 194 2.159517 GCTATTGAGAAAGTGTTGGCGG 60.160 50.000 0.00 0.00 0.00 6.13
194 195 2.270352 ATTGAGAAAGTGTTGGCGGA 57.730 45.000 0.00 0.00 0.00 5.54
195 196 1.593196 TTGAGAAAGTGTTGGCGGAG 58.407 50.000 0.00 0.00 0.00 4.63
196 197 0.250295 TGAGAAAGTGTTGGCGGAGG 60.250 55.000 0.00 0.00 0.00 4.30
197 198 0.034896 GAGAAAGTGTTGGCGGAGGA 59.965 55.000 0.00 0.00 0.00 3.71
198 199 0.035458 AGAAAGTGTTGGCGGAGGAG 59.965 55.000 0.00 0.00 0.00 3.69
199 200 0.034896 GAAAGTGTTGGCGGAGGAGA 59.965 55.000 0.00 0.00 0.00 3.71
200 201 0.035458 AAAGTGTTGGCGGAGGAGAG 59.965 55.000 0.00 0.00 0.00 3.20
201 202 0.832135 AAGTGTTGGCGGAGGAGAGA 60.832 55.000 0.00 0.00 0.00 3.10
202 203 0.616111 AGTGTTGGCGGAGGAGAGAT 60.616 55.000 0.00 0.00 0.00 2.75
203 204 0.460987 GTGTTGGCGGAGGAGAGATG 60.461 60.000 0.00 0.00 0.00 2.90
204 205 0.614697 TGTTGGCGGAGGAGAGATGA 60.615 55.000 0.00 0.00 0.00 2.92
205 206 0.537188 GTTGGCGGAGGAGAGATGAA 59.463 55.000 0.00 0.00 0.00 2.57
206 207 0.826715 TTGGCGGAGGAGAGATGAAG 59.173 55.000 0.00 0.00 0.00 3.02
207 208 1.068921 GGCGGAGGAGAGATGAAGC 59.931 63.158 0.00 0.00 0.00 3.86
208 209 1.299773 GCGGAGGAGAGATGAAGCG 60.300 63.158 0.00 0.00 0.00 4.68
209 210 1.361993 CGGAGGAGAGATGAAGCGG 59.638 63.158 0.00 0.00 0.00 5.52
210 211 1.388065 CGGAGGAGAGATGAAGCGGT 61.388 60.000 0.00 0.00 0.00 5.68
211 212 0.103937 GGAGGAGAGATGAAGCGGTG 59.896 60.000 0.00 0.00 0.00 4.94
212 213 1.107114 GAGGAGAGATGAAGCGGTGA 58.893 55.000 0.00 0.00 0.00 4.02
213 214 1.686052 GAGGAGAGATGAAGCGGTGAT 59.314 52.381 0.00 0.00 0.00 3.06
214 215 1.411977 AGGAGAGATGAAGCGGTGATG 59.588 52.381 0.00 0.00 0.00 3.07
215 216 1.410517 GGAGAGATGAAGCGGTGATGA 59.589 52.381 0.00 0.00 0.00 2.92
216 217 2.159043 GGAGAGATGAAGCGGTGATGAA 60.159 50.000 0.00 0.00 0.00 2.57
217 218 3.122297 GAGAGATGAAGCGGTGATGAAG 58.878 50.000 0.00 0.00 0.00 3.02
218 219 1.596727 GAGATGAAGCGGTGATGAAGC 59.403 52.381 0.00 0.00 0.00 3.86
219 220 1.209019 AGATGAAGCGGTGATGAAGCT 59.791 47.619 0.00 0.00 43.90 3.74
220 221 1.329906 GATGAAGCGGTGATGAAGCTG 59.670 52.381 0.00 0.00 41.53 4.24
221 222 0.674581 TGAAGCGGTGATGAAGCTGG 60.675 55.000 0.00 0.00 41.53 4.85
222 223 0.674895 GAAGCGGTGATGAAGCTGGT 60.675 55.000 0.00 0.00 41.53 4.00
223 224 0.957395 AAGCGGTGATGAAGCTGGTG 60.957 55.000 0.00 0.00 41.53 4.17
224 225 2.401766 GCGGTGATGAAGCTGGTGG 61.402 63.158 0.00 0.00 0.00 4.61
225 226 1.003355 CGGTGATGAAGCTGGTGGT 60.003 57.895 0.00 0.00 0.00 4.16
226 227 1.021390 CGGTGATGAAGCTGGTGGTC 61.021 60.000 0.00 0.00 0.00 4.02
227 228 1.021390 GGTGATGAAGCTGGTGGTCG 61.021 60.000 0.00 0.00 0.00 4.79
228 229 0.037326 GTGATGAAGCTGGTGGTCGA 60.037 55.000 0.00 0.00 0.00 4.20
229 230 0.904649 TGATGAAGCTGGTGGTCGAT 59.095 50.000 0.00 0.00 0.00 3.59
230 231 2.107366 TGATGAAGCTGGTGGTCGATA 58.893 47.619 0.00 0.00 0.00 2.92
231 232 2.159099 TGATGAAGCTGGTGGTCGATAC 60.159 50.000 0.00 0.00 0.00 2.24
232 233 0.535335 TGAAGCTGGTGGTCGATACC 59.465 55.000 13.24 13.24 46.98 2.73
250 251 5.923114 CGATACCATCGTTCAGATCTTGAAT 59.077 40.000 9.75 0.00 46.85 2.57
251 252 6.088749 CGATACCATCGTTCAGATCTTGAATC 59.911 42.308 9.75 4.13 46.85 2.52
252 253 4.446371 ACCATCGTTCAGATCTTGAATCC 58.554 43.478 9.75 0.63 46.85 3.01
253 254 4.163078 ACCATCGTTCAGATCTTGAATCCT 59.837 41.667 9.75 0.00 46.85 3.24
254 255 4.510711 CCATCGTTCAGATCTTGAATCCTG 59.489 45.833 9.75 0.00 46.85 3.86
255 256 3.525537 TCGTTCAGATCTTGAATCCTGC 58.474 45.455 9.75 0.00 46.85 4.85
256 257 3.196469 TCGTTCAGATCTTGAATCCTGCT 59.804 43.478 9.75 0.00 46.85 4.24
257 258 3.555139 CGTTCAGATCTTGAATCCTGCTC 59.445 47.826 9.75 0.00 46.85 4.26
258 259 3.834489 TCAGATCTTGAATCCTGCTCC 57.166 47.619 0.00 0.00 31.34 4.70
259 260 2.437281 TCAGATCTTGAATCCTGCTCCC 59.563 50.000 0.00 0.00 31.34 4.30
260 261 2.438763 CAGATCTTGAATCCTGCTCCCT 59.561 50.000 0.00 0.00 0.00 4.20
261 262 2.705127 AGATCTTGAATCCTGCTCCCTC 59.295 50.000 0.00 0.00 0.00 4.30
262 263 1.207791 TCTTGAATCCTGCTCCCTCC 58.792 55.000 0.00 0.00 0.00 4.30
263 264 0.179062 CTTGAATCCTGCTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
264 265 0.909610 TTGAATCCTGCTCCCTCCGT 60.910 55.000 0.00 0.00 0.00 4.69
265 266 0.909610 TGAATCCTGCTCCCTCCGTT 60.910 55.000 0.00 0.00 0.00 4.44
266 267 0.179070 GAATCCTGCTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
267 268 1.627297 AATCCTGCTCCCTCCGTTCC 61.627 60.000 0.00 0.00 0.00 3.62
268 269 4.148825 CCTGCTCCCTCCGTTCCG 62.149 72.222 0.00 0.00 0.00 4.30
269 270 3.068691 CTGCTCCCTCCGTTCCGA 61.069 66.667 0.00 0.00 0.00 4.55
270 271 2.602267 TGCTCCCTCCGTTCCGAA 60.602 61.111 0.00 0.00 0.00 4.30
271 272 1.961180 CTGCTCCCTCCGTTCCGAAT 61.961 60.000 0.00 0.00 0.00 3.34
272 273 1.221021 GCTCCCTCCGTTCCGAATT 59.779 57.895 0.00 0.00 0.00 2.17
273 274 0.462789 GCTCCCTCCGTTCCGAATTA 59.537 55.000 0.00 0.00 0.00 1.40
274 275 1.805495 GCTCCCTCCGTTCCGAATTAC 60.805 57.143 0.00 0.00 0.00 1.89
275 276 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
276 277 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
277 278 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
278 279 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
279 280 3.332034 CCTCCGTTCCGAATTACTTGTT 58.668 45.455 0.00 0.00 0.00 2.83
280 281 3.749609 CCTCCGTTCCGAATTACTTGTTT 59.250 43.478 0.00 0.00 0.00 2.83
281 282 4.214758 CCTCCGTTCCGAATTACTTGTTTT 59.785 41.667 0.00 0.00 0.00 2.43
282 283 5.098218 TCCGTTCCGAATTACTTGTTTTG 57.902 39.130 0.00 0.00 0.00 2.44
283 284 4.023878 TCCGTTCCGAATTACTTGTTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
284 285 4.023878 CCGTTCCGAATTACTTGTTTTGGA 60.024 41.667 0.00 0.00 34.28 3.53
285 286 5.335348 CCGTTCCGAATTACTTGTTTTGGAT 60.335 40.000 0.00 0.00 35.73 3.41
286 287 6.146898 CGTTCCGAATTACTTGTTTTGGATT 58.853 36.000 0.00 0.00 35.73 3.01
287 288 6.639279 CGTTCCGAATTACTTGTTTTGGATTT 59.361 34.615 0.00 0.00 35.73 2.17
288 289 7.358023 CGTTCCGAATTACTTGTTTTGGATTTG 60.358 37.037 0.00 0.00 35.73 2.32
289 290 7.045126 TCCGAATTACTTGTTTTGGATTTGT 57.955 32.000 0.00 0.00 31.71 2.83
290 291 7.142680 TCCGAATTACTTGTTTTGGATTTGTC 58.857 34.615 0.00 0.00 31.71 3.18
291 292 7.013846 TCCGAATTACTTGTTTTGGATTTGTCT 59.986 33.333 0.00 0.00 31.71 3.41
292 293 8.293867 CCGAATTACTTGTTTTGGATTTGTCTA 58.706 33.333 0.00 0.00 0.00 2.59
293 294 9.329913 CGAATTACTTGTTTTGGATTTGTCTAG 57.670 33.333 0.00 0.00 0.00 2.43
297 298 6.681777 ACTTGTTTTGGATTTGTCTAGATGC 58.318 36.000 0.00 0.00 0.00 3.91
298 299 5.295431 TGTTTTGGATTTGTCTAGATGCG 57.705 39.130 0.00 0.00 0.00 4.73
299 300 5.000591 TGTTTTGGATTTGTCTAGATGCGA 58.999 37.500 0.00 0.00 0.00 5.10
300 301 5.471797 TGTTTTGGATTTGTCTAGATGCGAA 59.528 36.000 0.00 0.00 0.00 4.70
301 302 6.150976 TGTTTTGGATTTGTCTAGATGCGAAT 59.849 34.615 0.00 0.00 0.00 3.34
302 303 7.335673 TGTTTTGGATTTGTCTAGATGCGAATA 59.664 33.333 0.00 0.00 0.00 1.75
303 304 8.345565 GTTTTGGATTTGTCTAGATGCGAATAT 58.654 33.333 0.00 0.00 0.00 1.28
304 305 9.554395 TTTTGGATTTGTCTAGATGCGAATATA 57.446 29.630 0.00 0.00 0.00 0.86
305 306 9.725019 TTTGGATTTGTCTAGATGCGAATATAT 57.275 29.630 0.00 0.00 0.00 0.86
306 307 8.707938 TGGATTTGTCTAGATGCGAATATATG 57.292 34.615 0.00 0.00 0.00 1.78
307 308 8.314021 TGGATTTGTCTAGATGCGAATATATGT 58.686 33.333 0.00 0.00 0.00 2.29
308 309 9.803315 GGATTTGTCTAGATGCGAATATATGTA 57.197 33.333 0.00 0.00 0.00 2.29
336 337 9.886132 ATTCATTTTAGTGTTAGATACCTTCGT 57.114 29.630 0.00 0.00 0.00 3.85
371 372 7.611213 ATCTAAGACAAGTAATTTGGAACGG 57.389 36.000 0.00 0.00 41.25 4.44
372 373 6.761312 TCTAAGACAAGTAATTTGGAACGGA 58.239 36.000 0.00 0.00 41.25 4.69
373 374 5.941948 AAGACAAGTAATTTGGAACGGAG 57.058 39.130 0.00 0.00 41.25 4.63
374 375 4.324267 AGACAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 41.25 4.30
375 376 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
376 377 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
377 378 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
378 379 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
379 380 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
380 381 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
381 382 0.604578 TTTGGAACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
382 383 0.251297 TTGGAACGGAGGGAGTACGA 60.251 55.000 0.00 0.00 0.00 3.43
383 384 0.033796 TGGAACGGAGGGAGTACGAT 60.034 55.000 0.00 0.00 0.00 3.73
384 385 0.384669 GGAACGGAGGGAGTACGATG 59.615 60.000 0.00 0.00 0.00 3.84
385 386 0.248949 GAACGGAGGGAGTACGATGC 60.249 60.000 0.00 0.00 0.00 3.91
386 387 0.683504 AACGGAGGGAGTACGATGCT 60.684 55.000 0.00 0.00 0.00 3.79
387 388 0.683504 ACGGAGGGAGTACGATGCTT 60.684 55.000 0.00 0.00 0.00 3.91
388 389 0.249073 CGGAGGGAGTACGATGCTTG 60.249 60.000 0.00 0.00 0.00 4.01
389 390 0.824759 GGAGGGAGTACGATGCTTGT 59.175 55.000 0.00 0.00 0.00 3.16
390 391 1.207329 GGAGGGAGTACGATGCTTGTT 59.793 52.381 0.00 0.00 0.00 2.83
391 392 2.271800 GAGGGAGTACGATGCTTGTTG 58.728 52.381 0.00 0.00 0.00 3.33
392 393 0.727398 GGGAGTACGATGCTTGTTGC 59.273 55.000 0.00 0.00 43.25 4.17
393 394 0.727398 GGAGTACGATGCTTGTTGCC 59.273 55.000 0.00 0.00 42.00 4.52
394 395 0.727398 GAGTACGATGCTTGTTGCCC 59.273 55.000 0.00 0.00 42.00 5.36
395 396 0.676782 AGTACGATGCTTGTTGCCCC 60.677 55.000 0.00 0.00 42.00 5.80
396 397 0.958382 GTACGATGCTTGTTGCCCCA 60.958 55.000 0.00 0.00 42.00 4.96
397 398 0.958382 TACGATGCTTGTTGCCCCAC 60.958 55.000 0.00 0.00 42.00 4.61
398 399 1.973281 CGATGCTTGTTGCCCCACT 60.973 57.895 0.00 0.00 42.00 4.00
399 400 0.676466 CGATGCTTGTTGCCCCACTA 60.676 55.000 0.00 0.00 42.00 2.74
400 401 1.767759 GATGCTTGTTGCCCCACTAT 58.232 50.000 0.00 0.00 42.00 2.12
401 402 2.744823 CGATGCTTGTTGCCCCACTATA 60.745 50.000 0.00 0.00 42.00 1.31
402 403 2.889170 TGCTTGTTGCCCCACTATAA 57.111 45.000 0.00 0.00 42.00 0.98
403 404 3.162147 TGCTTGTTGCCCCACTATAAA 57.838 42.857 0.00 0.00 42.00 1.40
404 405 3.501349 TGCTTGTTGCCCCACTATAAAA 58.499 40.909 0.00 0.00 42.00 1.52
405 406 4.093011 TGCTTGTTGCCCCACTATAAAAT 58.907 39.130 0.00 0.00 42.00 1.82
406 407 5.265191 TGCTTGTTGCCCCACTATAAAATA 58.735 37.500 0.00 0.00 42.00 1.40
407 408 5.359576 TGCTTGTTGCCCCACTATAAAATAG 59.640 40.000 0.00 0.00 42.00 1.73
408 409 5.359860 GCTTGTTGCCCCACTATAAAATAGT 59.640 40.000 0.00 0.00 35.15 2.12
409 410 6.680378 GCTTGTTGCCCCACTATAAAATAGTG 60.680 42.308 16.66 16.66 39.12 2.74
420 421 8.894768 CACTATAAAATAGTGGAAAGAGAGGG 57.105 38.462 16.05 0.00 40.76 4.30
421 422 7.934120 CACTATAAAATAGTGGAAAGAGAGGGG 59.066 40.741 16.05 0.00 40.76 4.79
422 423 7.849904 ACTATAAAATAGTGGAAAGAGAGGGGA 59.150 37.037 0.00 0.00 0.00 4.81
423 424 5.443230 AAAATAGTGGAAAGAGAGGGGAG 57.557 43.478 0.00 0.00 0.00 4.30
424 425 4.354208 AATAGTGGAAAGAGAGGGGAGA 57.646 45.455 0.00 0.00 0.00 3.71
425 426 2.246091 AGTGGAAAGAGAGGGGAGAG 57.754 55.000 0.00 0.00 0.00 3.20
426 427 1.435168 AGTGGAAAGAGAGGGGAGAGT 59.565 52.381 0.00 0.00 0.00 3.24
427 428 1.552792 GTGGAAAGAGAGGGGAGAGTG 59.447 57.143 0.00 0.00 0.00 3.51
428 429 1.433199 TGGAAAGAGAGGGGAGAGTGA 59.567 52.381 0.00 0.00 0.00 3.41
429 430 2.107366 GGAAAGAGAGGGGAGAGTGAG 58.893 57.143 0.00 0.00 0.00 3.51
430 431 1.480545 GAAAGAGAGGGGAGAGTGAGC 59.519 57.143 0.00 0.00 0.00 4.26
431 432 0.682855 AAGAGAGGGGAGAGTGAGCG 60.683 60.000 0.00 0.00 0.00 5.03
432 433 2.043450 AGAGGGGAGAGTGAGCGG 60.043 66.667 0.00 0.00 0.00 5.52
433 434 2.363147 GAGGGGAGAGTGAGCGGT 60.363 66.667 0.00 0.00 0.00 5.68
434 435 2.681778 AGGGGAGAGTGAGCGGTG 60.682 66.667 0.00 0.00 0.00 4.94
435 436 2.680352 GGGGAGAGTGAGCGGTGA 60.680 66.667 0.00 0.00 0.00 4.02
436 437 2.716017 GGGGAGAGTGAGCGGTGAG 61.716 68.421 0.00 0.00 0.00 3.51
437 438 1.679305 GGGAGAGTGAGCGGTGAGA 60.679 63.158 0.00 0.00 0.00 3.27
438 439 1.251527 GGGAGAGTGAGCGGTGAGAA 61.252 60.000 0.00 0.00 0.00 2.87
439 440 0.603569 GGAGAGTGAGCGGTGAGAAA 59.396 55.000 0.00 0.00 0.00 2.52
440 441 1.403514 GGAGAGTGAGCGGTGAGAAAG 60.404 57.143 0.00 0.00 0.00 2.62
441 442 0.605589 AGAGTGAGCGGTGAGAAAGG 59.394 55.000 0.00 0.00 0.00 3.11
442 443 0.603569 GAGTGAGCGGTGAGAAAGGA 59.396 55.000 0.00 0.00 0.00 3.36
443 444 0.605589 AGTGAGCGGTGAGAAAGGAG 59.394 55.000 0.00 0.00 0.00 3.69
444 445 1.016653 GTGAGCGGTGAGAAAGGAGC 61.017 60.000 0.00 0.00 0.00 4.70
445 446 1.807573 GAGCGGTGAGAAAGGAGCG 60.808 63.158 0.00 0.00 36.19 5.03
446 447 2.214181 GAGCGGTGAGAAAGGAGCGA 62.214 60.000 0.00 0.00 35.10 4.93
447 448 1.807573 GCGGTGAGAAAGGAGCGAG 60.808 63.158 0.00 0.00 35.10 5.03
448 449 1.153745 CGGTGAGAAAGGAGCGAGG 60.154 63.158 0.00 0.00 35.10 4.63
449 450 1.219393 GGTGAGAAAGGAGCGAGGG 59.781 63.158 0.00 0.00 0.00 4.30
450 451 1.219393 GTGAGAAAGGAGCGAGGGG 59.781 63.158 0.00 0.00 0.00 4.79
451 452 1.078528 TGAGAAAGGAGCGAGGGGA 59.921 57.895 0.00 0.00 0.00 4.81
452 453 0.325671 TGAGAAAGGAGCGAGGGGAT 60.326 55.000 0.00 0.00 0.00 3.85
453 454 0.833949 GAGAAAGGAGCGAGGGGATT 59.166 55.000 0.00 0.00 0.00 3.01
454 455 1.210722 GAGAAAGGAGCGAGGGGATTT 59.789 52.381 0.00 0.00 0.00 2.17
455 456 2.434702 GAGAAAGGAGCGAGGGGATTTA 59.565 50.000 0.00 0.00 0.00 1.40
456 457 3.049344 AGAAAGGAGCGAGGGGATTTAT 58.951 45.455 0.00 0.00 0.00 1.40
457 458 3.459969 AGAAAGGAGCGAGGGGATTTATT 59.540 43.478 0.00 0.00 0.00 1.40
458 459 2.938956 AGGAGCGAGGGGATTTATTG 57.061 50.000 0.00 0.00 0.00 1.90
459 460 1.202818 AGGAGCGAGGGGATTTATTGC 60.203 52.381 0.00 0.00 0.00 3.56
460 461 1.476833 GGAGCGAGGGGATTTATTGCA 60.477 52.381 0.00 0.00 0.00 4.08
461 462 1.604278 GAGCGAGGGGATTTATTGCAC 59.396 52.381 0.00 0.00 0.00 4.57
462 463 0.668535 GCGAGGGGATTTATTGCACC 59.331 55.000 0.00 0.00 0.00 5.01
463 464 0.944386 CGAGGGGATTTATTGCACCG 59.056 55.000 0.00 0.00 0.00 4.94
464 465 0.668535 GAGGGGATTTATTGCACCGC 59.331 55.000 0.00 0.00 35.95 5.68
465 466 0.258774 AGGGGATTTATTGCACCGCT 59.741 50.000 2.88 2.88 40.07 5.52
466 467 1.111277 GGGGATTTATTGCACCGCTT 58.889 50.000 0.00 0.00 33.55 4.68
467 468 1.067060 GGGGATTTATTGCACCGCTTC 59.933 52.381 0.00 0.00 33.55 3.86
468 469 1.268539 GGGATTTATTGCACCGCTTCG 60.269 52.381 0.00 0.00 0.00 3.79
469 470 1.400494 GGATTTATTGCACCGCTTCGT 59.600 47.619 0.00 0.00 0.00 3.85
470 471 2.610374 GGATTTATTGCACCGCTTCGTA 59.390 45.455 0.00 0.00 0.00 3.43
471 472 3.064271 GGATTTATTGCACCGCTTCGTAA 59.936 43.478 0.00 0.00 0.00 3.18
472 473 4.437659 GGATTTATTGCACCGCTTCGTAAA 60.438 41.667 0.00 0.00 0.00 2.01
473 474 4.485024 TTTATTGCACCGCTTCGTAAAA 57.515 36.364 0.00 0.00 0.00 1.52
474 475 2.325509 ATTGCACCGCTTCGTAAAAC 57.674 45.000 0.00 0.00 0.00 2.43
475 476 1.015109 TTGCACCGCTTCGTAAAACA 58.985 45.000 0.00 0.00 0.00 2.83
476 477 1.015109 TGCACCGCTTCGTAAAACAA 58.985 45.000 0.00 0.00 0.00 2.83
477 478 1.268133 TGCACCGCTTCGTAAAACAAC 60.268 47.619 0.00 0.00 0.00 3.32
478 479 1.654463 CACCGCTTCGTAAAACAACG 58.346 50.000 0.00 0.00 44.19 4.10
479 480 0.041926 ACCGCTTCGTAAAACAACGC 60.042 50.000 0.00 0.00 42.56 4.84
480 481 1.050670 CCGCTTCGTAAAACAACGCG 61.051 55.000 3.53 3.53 42.56 6.01
481 482 1.640733 CGCTTCGTAAAACAACGCGC 61.641 55.000 5.73 0.00 42.56 6.86
482 483 1.325210 GCTTCGTAAAACAACGCGCC 61.325 55.000 5.73 0.00 42.56 6.53
483 484 0.042013 CTTCGTAAAACAACGCGCCA 60.042 50.000 5.73 0.00 42.56 5.69
484 485 0.587285 TTCGTAAAACAACGCGCCAT 59.413 45.000 5.73 0.00 42.56 4.40
485 486 0.110599 TCGTAAAACAACGCGCCATG 60.111 50.000 5.73 5.71 42.56 3.66
486 487 0.384974 CGTAAAACAACGCGCCATGT 60.385 50.000 5.73 6.48 35.87 3.21
487 488 1.049251 GTAAAACAACGCGCCATGTG 58.951 50.000 5.73 3.39 0.00 3.21
488 489 0.945099 TAAAACAACGCGCCATGTGA 59.055 45.000 5.73 0.66 0.00 3.58
489 490 0.593773 AAAACAACGCGCCATGTGAC 60.594 50.000 5.73 0.00 0.00 3.67
490 491 2.709629 AAACAACGCGCCATGTGACG 62.710 55.000 5.73 0.00 0.00 4.35
496 497 3.711842 CGCCATGTGACGCACGTT 61.712 61.111 0.00 0.00 37.14 3.99
497 498 2.173382 GCCATGTGACGCACGTTC 59.827 61.111 0.00 0.00 37.14 3.95
498 499 2.860293 CCATGTGACGCACGTTCC 59.140 61.111 0.00 0.00 37.14 3.62
499 500 2.469847 CATGTGACGCACGTTCCG 59.530 61.111 0.00 4.02 37.14 4.30
500 501 2.736995 ATGTGACGCACGTTCCGG 60.737 61.111 9.79 0.00 37.14 5.14
501 502 3.509137 ATGTGACGCACGTTCCGGT 62.509 57.895 0.00 0.00 37.14 5.28
502 503 3.698463 GTGACGCACGTTCCGGTG 61.698 66.667 0.00 0.00 40.89 4.94
524 525 1.063174 GATGATGTTCTTCTGCCACGC 59.937 52.381 0.00 0.00 0.00 5.34
525 526 0.035317 TGATGTTCTTCTGCCACGCT 59.965 50.000 0.00 0.00 0.00 5.07
529 530 0.880278 GTTCTTCTGCCACGCTGTGA 60.880 55.000 9.75 0.00 35.23 3.58
542 543 1.860950 CGCTGTGAATCATCCCTAACG 59.139 52.381 0.00 0.00 0.00 3.18
576 591 1.297364 GCCGGCCCACTACACTAAA 59.703 57.895 18.11 0.00 0.00 1.85
603 618 2.644992 CAAAGCAAGGCCACGTCC 59.355 61.111 5.01 0.00 0.00 4.79
604 619 2.597510 AAAGCAAGGCCACGTCCC 60.598 61.111 5.01 0.00 0.00 4.46
605 620 3.429372 AAAGCAAGGCCACGTCCCA 62.429 57.895 5.01 0.00 0.00 4.37
606 621 4.643387 AGCAAGGCCACGTCCCAC 62.643 66.667 5.01 0.00 0.00 4.61
637 652 0.109226 GAAACAGGTCGAGGAGGACG 60.109 60.000 0.00 0.00 37.82 4.79
674 689 5.296780 ACACGACCAAATAATTAGCATCTGG 59.703 40.000 0.00 0.00 0.00 3.86
732 5621 0.958091 GCTACATTTGGCACCACACA 59.042 50.000 0.00 0.00 0.00 3.72
790 5684 1.227793 GCTGCCAGCTGATAGGTCC 60.228 63.158 17.39 0.00 38.45 4.46
791 5685 1.976132 GCTGCCAGCTGATAGGTCCA 61.976 60.000 17.39 0.00 38.45 4.02
805 5702 2.964209 AGGTCCAGTCAGAGACAAGAA 58.036 47.619 0.00 0.00 34.60 2.52
905 5817 6.126652 CCCTCCCTATATATACATGCAAAGCT 60.127 42.308 0.00 0.00 0.00 3.74
910 5822 8.700051 CCCTATATATACATGCAAAGCTAGAGT 58.300 37.037 0.00 0.00 0.00 3.24
919 5831 4.641396 TGCAAAGCTAGAGTTAGAAGCAA 58.359 39.130 0.00 0.00 38.75 3.91
952 5874 0.761187 CGTCCATCCCATCACAGGAT 59.239 55.000 0.00 0.00 45.28 3.24
973 5895 2.445525 TCCTTCCCCTTTAGCAACAAGT 59.554 45.455 0.00 0.00 0.00 3.16
1143 6088 3.246112 AACTACACGGCCTGGGCA 61.246 61.111 21.03 0.00 44.11 5.36
1204 6156 4.104776 GCAATCACACAACCATTAATCCG 58.895 43.478 0.00 0.00 0.00 4.18
1245 6204 0.817229 TCGCCATGCTTCACAACACA 60.817 50.000 0.00 0.00 0.00 3.72
1266 6225 1.347817 CGCGCTCTCTGTCTTGGTTC 61.348 60.000 5.56 0.00 0.00 3.62
1267 6226 1.016653 GCGCTCTCTGTCTTGGTTCC 61.017 60.000 0.00 0.00 0.00 3.62
1305 6266 1.565591 CCGCGCGTTCTTGTGTTAA 59.434 52.632 29.95 0.00 0.00 2.01
1440 6402 2.126071 CGGGTCACGCTCGACAAT 60.126 61.111 4.95 0.00 45.67 2.71
1653 6644 0.252513 TGCTCTAGGCTACAACCCCA 60.253 55.000 0.00 0.00 42.39 4.96
1704 6696 1.547292 CGTCGCGTCCGTGGTTTTTA 61.547 55.000 5.77 0.00 35.54 1.52
1705 6697 0.162294 GTCGCGTCCGTGGTTTTTAG 59.838 55.000 5.77 0.00 35.54 1.85
1762 6754 5.912396 TGTATCAGCATTTTCGTTGTTGTTC 59.088 36.000 0.00 0.00 0.00 3.18
1780 6772 5.505181 TGTTCTCTAATTTGAGCCCTTCT 57.495 39.130 11.52 0.00 34.29 2.85
1813 6807 8.688747 TTTGGCCAAAGATTAATTTCATTTGT 57.311 26.923 27.13 0.00 0.00 2.83
1857 6861 8.506437 GTTGAACAAGATAGATGATGTCAAACA 58.494 33.333 0.00 0.00 0.00 2.83
1902 6906 3.022607 ACTTTAACCCGAGTGTCGAAG 57.977 47.619 0.00 0.00 43.74 3.79
1947 6951 4.742659 GCGTTCCTCACAGATAAGATCTTC 59.257 45.833 12.24 0.00 37.58 2.87
2002 8152 8.918961 ACAAATATTTTCGAAACACAACTTCA 57.081 26.923 10.79 0.00 0.00 3.02
2023 8173 5.577835 TCATGTCACCAAAAGAAAGTTTCG 58.422 37.500 9.91 0.00 34.02 3.46
2026 8176 5.395642 TGTCACCAAAAGAAAGTTTCGAAC 58.604 37.500 9.91 0.00 34.02 3.95
2027 8177 5.182380 TGTCACCAAAAGAAAGTTTCGAACT 59.818 36.000 9.91 0.00 45.46 3.01
2147 9257 0.968405 GCCACCAAAAGATGCCTTCA 59.032 50.000 0.00 0.00 0.00 3.02
2274 10122 7.762159 TGTTGTGGGTAAAATTCAAGTTTCTTC 59.238 33.333 0.00 0.00 0.00 2.87
2447 10439 9.995003 AATCCAAGCTTTGATAATTGTACAAAA 57.005 25.926 13.23 4.38 34.03 2.44
2448 10440 9.995003 ATCCAAGCTTTGATAATTGTACAAAAA 57.005 25.926 13.23 7.26 34.03 1.94
2449 10441 9.995003 TCCAAGCTTTGATAATTGTACAAAAAT 57.005 25.926 13.23 8.97 34.03 1.82
2526 10518 7.011295 ACACACATTTGTCAAAAATGATCAACC 59.989 33.333 7.34 0.00 39.36 3.77
2528 10520 8.420222 ACACATTTGTCAAAAATGATCAACCTA 58.580 29.630 7.34 0.00 39.36 3.08
2531 10523 9.642327 CATTTGTCAAAAATGATCAACCTATCA 57.358 29.630 0.00 0.00 39.36 2.15
2639 10631 5.475909 TGTTAATGTCTAGTGACGAGGAACT 59.524 40.000 0.00 0.00 45.70 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.986833 GCAACTTTTTGATTAATTTTGTTGAGT 57.013 25.926 15.23 3.57 35.65 3.41
40 41 9.923143 CCGTCCATATTAGTTGTTGAGAATATA 57.077 33.333 0.00 0.00 0.00 0.86
41 42 7.387948 GCCGTCCATATTAGTTGTTGAGAATAT 59.612 37.037 0.00 0.00 0.00 1.28
42 43 6.704493 GCCGTCCATATTAGTTGTTGAGAATA 59.296 38.462 0.00 0.00 0.00 1.75
43 44 5.527582 GCCGTCCATATTAGTTGTTGAGAAT 59.472 40.000 0.00 0.00 0.00 2.40
44 45 4.873827 GCCGTCCATATTAGTTGTTGAGAA 59.126 41.667 0.00 0.00 0.00 2.87
45 46 4.439057 GCCGTCCATATTAGTTGTTGAGA 58.561 43.478 0.00 0.00 0.00 3.27
46 47 3.560068 GGCCGTCCATATTAGTTGTTGAG 59.440 47.826 0.00 0.00 0.00 3.02
47 48 3.055021 TGGCCGTCCATATTAGTTGTTGA 60.055 43.478 0.00 0.00 37.47 3.18
48 49 3.275143 TGGCCGTCCATATTAGTTGTTG 58.725 45.455 0.00 0.00 37.47 3.33
49 50 3.637911 TGGCCGTCCATATTAGTTGTT 57.362 42.857 0.00 0.00 37.47 2.83
50 51 3.637911 TTGGCCGTCCATATTAGTTGT 57.362 42.857 0.00 0.00 43.05 3.32
51 52 4.578516 TGATTTGGCCGTCCATATTAGTTG 59.421 41.667 0.00 0.00 43.05 3.16
52 53 4.787551 TGATTTGGCCGTCCATATTAGTT 58.212 39.130 0.00 0.00 43.05 2.24
53 54 4.431416 TGATTTGGCCGTCCATATTAGT 57.569 40.909 0.00 0.00 43.05 2.24
54 55 4.379813 GCATGATTTGGCCGTCCATATTAG 60.380 45.833 0.00 0.00 43.05 1.73
55 56 3.505680 GCATGATTTGGCCGTCCATATTA 59.494 43.478 0.00 0.00 43.05 0.98
56 57 2.297033 GCATGATTTGGCCGTCCATATT 59.703 45.455 0.00 0.00 43.05 1.28
57 58 1.888512 GCATGATTTGGCCGTCCATAT 59.111 47.619 0.00 0.00 43.05 1.78
58 59 1.133823 AGCATGATTTGGCCGTCCATA 60.134 47.619 0.00 0.00 43.05 2.74
59 60 0.396139 AGCATGATTTGGCCGTCCAT 60.396 50.000 0.00 0.00 43.05 3.41
60 61 0.611618 AAGCATGATTTGGCCGTCCA 60.612 50.000 0.00 0.00 41.55 4.02
61 62 0.532115 AAAGCATGATTTGGCCGTCC 59.468 50.000 8.40 0.00 0.00 4.79
62 63 2.368655 AAAAGCATGATTTGGCCGTC 57.631 45.000 10.14 0.00 0.00 4.79
63 64 3.951775 TTAAAAGCATGATTTGGCCGT 57.048 38.095 10.14 0.00 0.00 5.68
64 65 3.486841 CGATTAAAAGCATGATTTGGCCG 59.513 43.478 10.14 7.85 0.00 6.13
65 66 4.504097 GTCGATTAAAAGCATGATTTGGCC 59.496 41.667 10.14 0.00 0.00 5.36
66 67 5.004726 GTGTCGATTAAAAGCATGATTTGGC 59.995 40.000 10.14 0.00 0.00 4.52
67 68 5.516339 GGTGTCGATTAAAAGCATGATTTGG 59.484 40.000 10.14 0.00 0.00 3.28
68 69 5.516339 GGGTGTCGATTAAAAGCATGATTTG 59.484 40.000 10.14 0.00 0.00 2.32
69 70 5.184864 TGGGTGTCGATTAAAAGCATGATTT 59.815 36.000 2.39 2.39 0.00 2.17
70 71 4.704540 TGGGTGTCGATTAAAAGCATGATT 59.295 37.500 0.00 0.00 0.00 2.57
71 72 4.269183 TGGGTGTCGATTAAAAGCATGAT 58.731 39.130 0.00 0.00 0.00 2.45
72 73 3.680490 TGGGTGTCGATTAAAAGCATGA 58.320 40.909 0.00 0.00 0.00 3.07
73 74 4.637483 ATGGGTGTCGATTAAAAGCATG 57.363 40.909 0.00 0.00 0.00 4.06
74 75 6.293407 CGATTATGGGTGTCGATTAAAAGCAT 60.293 38.462 0.00 0.00 37.55 3.79
75 76 5.007234 CGATTATGGGTGTCGATTAAAAGCA 59.993 40.000 0.00 0.00 37.55 3.91
76 77 5.235616 TCGATTATGGGTGTCGATTAAAAGC 59.764 40.000 0.00 0.00 39.22 3.51
77 78 6.838198 TCGATTATGGGTGTCGATTAAAAG 57.162 37.500 0.00 0.00 39.22 2.27
78 79 6.259167 CCTTCGATTATGGGTGTCGATTAAAA 59.741 38.462 0.00 0.00 43.03 1.52
79 80 5.756347 CCTTCGATTATGGGTGTCGATTAAA 59.244 40.000 0.00 0.00 43.03 1.52
80 81 5.294356 CCTTCGATTATGGGTGTCGATTAA 58.706 41.667 0.00 0.00 43.03 1.40
81 82 4.798263 GCCTTCGATTATGGGTGTCGATTA 60.798 45.833 0.00 0.00 43.03 1.75
82 83 3.728845 CCTTCGATTATGGGTGTCGATT 58.271 45.455 0.00 0.00 43.03 3.34
83 84 2.548067 GCCTTCGATTATGGGTGTCGAT 60.548 50.000 0.00 0.00 43.03 3.59
84 85 1.202486 GCCTTCGATTATGGGTGTCGA 60.202 52.381 0.00 0.00 42.01 4.20
85 86 1.202533 AGCCTTCGATTATGGGTGTCG 60.203 52.381 0.00 0.00 32.21 4.35
86 87 2.622064 AGCCTTCGATTATGGGTGTC 57.378 50.000 0.00 0.00 32.21 3.67
87 88 4.497291 TTTAGCCTTCGATTATGGGTGT 57.503 40.909 8.53 0.00 35.03 4.16
88 89 4.152402 CGATTTAGCCTTCGATTATGGGTG 59.848 45.833 8.53 0.00 37.55 4.61
89 90 4.039973 TCGATTTAGCCTTCGATTATGGGT 59.960 41.667 0.00 0.00 39.29 4.51
90 91 4.566004 TCGATTTAGCCTTCGATTATGGG 58.434 43.478 0.00 0.00 39.29 4.00
91 92 6.147821 ACATTCGATTTAGCCTTCGATTATGG 59.852 38.462 10.12 0.00 43.23 2.74
92 93 7.011773 CACATTCGATTTAGCCTTCGATTATG 58.988 38.462 0.00 0.00 43.23 1.90
93 94 6.347725 GCACATTCGATTTAGCCTTCGATTAT 60.348 38.462 0.00 0.00 43.23 1.28
94 95 5.050363 GCACATTCGATTTAGCCTTCGATTA 60.050 40.000 0.00 0.00 43.23 1.75
95 96 4.260784 GCACATTCGATTTAGCCTTCGATT 60.261 41.667 0.00 0.00 43.23 3.34
96 97 3.248602 GCACATTCGATTTAGCCTTCGAT 59.751 43.478 0.00 0.00 43.23 3.59
97 98 2.607635 GCACATTCGATTTAGCCTTCGA 59.392 45.455 0.00 0.00 42.19 3.71
98 99 2.597505 CGCACATTCGATTTAGCCTTCG 60.598 50.000 0.00 0.00 36.72 3.79
99 100 2.607635 TCGCACATTCGATTTAGCCTTC 59.392 45.455 0.00 0.00 33.02 3.46
100 101 2.627945 TCGCACATTCGATTTAGCCTT 58.372 42.857 0.00 0.00 33.02 4.35
101 102 2.309528 TCGCACATTCGATTTAGCCT 57.690 45.000 0.00 0.00 33.02 4.58
102 103 2.351726 ACTTCGCACATTCGATTTAGCC 59.648 45.455 0.00 0.00 38.37 3.93
103 104 3.658351 ACTTCGCACATTCGATTTAGC 57.342 42.857 0.00 0.00 38.37 3.09
104 105 8.601243 ATTTAAACTTCGCACATTCGATTTAG 57.399 30.769 0.00 0.00 38.37 1.85
105 106 7.694784 GGATTTAAACTTCGCACATTCGATTTA 59.305 33.333 0.00 0.00 38.37 1.40
106 107 6.526674 GGATTTAAACTTCGCACATTCGATTT 59.473 34.615 0.00 0.00 38.37 2.17
107 108 6.027749 GGATTTAAACTTCGCACATTCGATT 58.972 36.000 0.00 0.00 38.37 3.34
108 109 5.123186 TGGATTTAAACTTCGCACATTCGAT 59.877 36.000 0.00 0.00 38.37 3.59
109 110 4.452795 TGGATTTAAACTTCGCACATTCGA 59.547 37.500 0.00 0.00 36.60 3.71
110 111 4.717991 TGGATTTAAACTTCGCACATTCG 58.282 39.130 0.00 0.00 0.00 3.34
111 112 4.558860 GCTGGATTTAAACTTCGCACATTC 59.441 41.667 0.00 0.00 0.00 2.67
112 113 4.485163 GCTGGATTTAAACTTCGCACATT 58.515 39.130 0.00 0.00 0.00 2.71
113 114 3.119495 GGCTGGATTTAAACTTCGCACAT 60.119 43.478 0.00 0.00 0.00 3.21
114 115 2.227865 GGCTGGATTTAAACTTCGCACA 59.772 45.455 0.00 0.00 0.00 4.57
115 116 2.488153 AGGCTGGATTTAAACTTCGCAC 59.512 45.455 0.00 0.00 0.00 5.34
116 117 2.790433 AGGCTGGATTTAAACTTCGCA 58.210 42.857 0.00 0.00 0.00 5.10
117 118 3.687698 TGTAGGCTGGATTTAAACTTCGC 59.312 43.478 0.00 0.00 0.00 4.70
118 119 5.276868 CGATGTAGGCTGGATTTAAACTTCG 60.277 44.000 0.00 0.44 0.00 3.79
119 120 5.815740 TCGATGTAGGCTGGATTTAAACTTC 59.184 40.000 0.00 0.00 0.00 3.01
120 121 5.741011 TCGATGTAGGCTGGATTTAAACTT 58.259 37.500 0.00 0.00 0.00 2.66
121 122 5.353394 TCGATGTAGGCTGGATTTAAACT 57.647 39.130 0.00 0.00 0.00 2.66
122 123 5.107453 CGATCGATGTAGGCTGGATTTAAAC 60.107 44.000 10.26 0.00 0.00 2.01
123 124 4.988540 CGATCGATGTAGGCTGGATTTAAA 59.011 41.667 10.26 0.00 0.00 1.52
124 125 4.556233 CGATCGATGTAGGCTGGATTTAA 58.444 43.478 10.26 0.00 0.00 1.52
125 126 3.614150 GCGATCGATGTAGGCTGGATTTA 60.614 47.826 21.57 0.00 0.00 1.40
126 127 2.868044 GCGATCGATGTAGGCTGGATTT 60.868 50.000 21.57 0.00 0.00 2.17
127 128 1.337260 GCGATCGATGTAGGCTGGATT 60.337 52.381 21.57 0.00 0.00 3.01
128 129 0.244994 GCGATCGATGTAGGCTGGAT 59.755 55.000 21.57 0.00 0.00 3.41
129 130 0.823769 AGCGATCGATGTAGGCTGGA 60.824 55.000 21.57 0.00 31.74 3.86
130 131 0.881796 TAGCGATCGATGTAGGCTGG 59.118 55.000 21.57 0.00 35.28 4.85
131 132 2.706555 TTAGCGATCGATGTAGGCTG 57.293 50.000 21.57 0.00 35.28 4.85
132 133 3.255888 TGATTTAGCGATCGATGTAGGCT 59.744 43.478 21.57 8.79 37.73 4.58
133 134 3.575630 TGATTTAGCGATCGATGTAGGC 58.424 45.455 21.57 3.75 0.00 3.93
134 135 4.169508 CCTGATTTAGCGATCGATGTAGG 58.830 47.826 21.57 13.17 0.00 3.18
135 136 4.799678 ACCTGATTTAGCGATCGATGTAG 58.200 43.478 21.57 8.09 0.00 2.74
136 137 4.848562 ACCTGATTTAGCGATCGATGTA 57.151 40.909 21.57 5.41 0.00 2.29
137 138 3.735237 ACCTGATTTAGCGATCGATGT 57.265 42.857 21.57 1.23 0.00 3.06
138 139 5.048153 TCTACCTGATTTAGCGATCGATG 57.952 43.478 21.57 0.48 0.00 3.84
139 140 5.906113 ATCTACCTGATTTAGCGATCGAT 57.094 39.130 21.57 16.78 29.59 3.59
140 141 5.354513 CCTATCTACCTGATTTAGCGATCGA 59.645 44.000 21.57 0.00 36.65 3.59
141 142 5.354513 TCCTATCTACCTGATTTAGCGATCG 59.645 44.000 11.69 11.69 36.65 3.69
142 143 6.761099 TCCTATCTACCTGATTTAGCGATC 57.239 41.667 0.00 0.00 36.65 3.69
143 144 6.665680 ACATCCTATCTACCTGATTTAGCGAT 59.334 38.462 0.00 0.00 36.65 4.58
144 145 6.010850 ACATCCTATCTACCTGATTTAGCGA 58.989 40.000 0.00 0.00 36.65 4.93
145 146 6.274157 ACATCCTATCTACCTGATTTAGCG 57.726 41.667 0.00 0.00 36.65 4.26
146 147 8.247562 CAGTACATCCTATCTACCTGATTTAGC 58.752 40.741 0.00 0.00 36.65 3.09
147 148 8.247562 GCAGTACATCCTATCTACCTGATTTAG 58.752 40.741 0.00 0.00 36.65 1.85
148 149 7.950684 AGCAGTACATCCTATCTACCTGATTTA 59.049 37.037 0.00 0.00 36.65 1.40
149 150 6.784969 AGCAGTACATCCTATCTACCTGATTT 59.215 38.462 0.00 0.00 36.65 2.17
150 151 6.318913 AGCAGTACATCCTATCTACCTGATT 58.681 40.000 0.00 0.00 36.65 2.57
151 152 5.898120 AGCAGTACATCCTATCTACCTGAT 58.102 41.667 0.00 0.00 39.11 2.90
152 153 5.326283 AGCAGTACATCCTATCTACCTGA 57.674 43.478 0.00 0.00 0.00 3.86
153 154 7.394641 TCAATAGCAGTACATCCTATCTACCTG 59.605 40.741 0.00 0.00 0.00 4.00
154 155 7.471041 TCAATAGCAGTACATCCTATCTACCT 58.529 38.462 0.00 0.00 0.00 3.08
155 156 7.612244 TCTCAATAGCAGTACATCCTATCTACC 59.388 40.741 0.00 0.00 0.00 3.18
156 157 8.568676 TCTCAATAGCAGTACATCCTATCTAC 57.431 38.462 0.00 0.00 0.00 2.59
157 158 9.588096 TTTCTCAATAGCAGTACATCCTATCTA 57.412 33.333 0.00 0.00 0.00 1.98
158 159 8.484214 TTTCTCAATAGCAGTACATCCTATCT 57.516 34.615 0.00 0.00 0.00 1.98
159 160 8.364142 ACTTTCTCAATAGCAGTACATCCTATC 58.636 37.037 0.00 0.00 0.00 2.08
160 161 8.147058 CACTTTCTCAATAGCAGTACATCCTAT 58.853 37.037 0.00 0.00 0.00 2.57
161 162 7.124298 ACACTTTCTCAATAGCAGTACATCCTA 59.876 37.037 0.00 0.00 0.00 2.94
162 163 6.070538 ACACTTTCTCAATAGCAGTACATCCT 60.071 38.462 0.00 0.00 0.00 3.24
163 164 6.109359 ACACTTTCTCAATAGCAGTACATCC 58.891 40.000 0.00 0.00 0.00 3.51
164 165 7.413438 CCAACACTTTCTCAATAGCAGTACATC 60.413 40.741 0.00 0.00 0.00 3.06
165 166 6.372659 CCAACACTTTCTCAATAGCAGTACAT 59.627 38.462 0.00 0.00 0.00 2.29
166 167 5.700832 CCAACACTTTCTCAATAGCAGTACA 59.299 40.000 0.00 0.00 0.00 2.90
167 168 5.390991 GCCAACACTTTCTCAATAGCAGTAC 60.391 44.000 0.00 0.00 0.00 2.73
168 169 4.695455 GCCAACACTTTCTCAATAGCAGTA 59.305 41.667 0.00 0.00 0.00 2.74
169 170 3.503748 GCCAACACTTTCTCAATAGCAGT 59.496 43.478 0.00 0.00 0.00 4.40
170 171 3.425359 CGCCAACACTTTCTCAATAGCAG 60.425 47.826 0.00 0.00 0.00 4.24
171 172 2.483877 CGCCAACACTTTCTCAATAGCA 59.516 45.455 0.00 0.00 0.00 3.49
172 173 2.159517 CCGCCAACACTTTCTCAATAGC 60.160 50.000 0.00 0.00 0.00 2.97
173 174 3.334691 TCCGCCAACACTTTCTCAATAG 58.665 45.455 0.00 0.00 0.00 1.73
174 175 3.334691 CTCCGCCAACACTTTCTCAATA 58.665 45.455 0.00 0.00 0.00 1.90
175 176 2.154462 CTCCGCCAACACTTTCTCAAT 58.846 47.619 0.00 0.00 0.00 2.57
176 177 1.593196 CTCCGCCAACACTTTCTCAA 58.407 50.000 0.00 0.00 0.00 3.02
177 178 0.250295 CCTCCGCCAACACTTTCTCA 60.250 55.000 0.00 0.00 0.00 3.27
178 179 0.034896 TCCTCCGCCAACACTTTCTC 59.965 55.000 0.00 0.00 0.00 2.87
179 180 0.035458 CTCCTCCGCCAACACTTTCT 59.965 55.000 0.00 0.00 0.00 2.52
180 181 0.034896 TCTCCTCCGCCAACACTTTC 59.965 55.000 0.00 0.00 0.00 2.62
181 182 0.035458 CTCTCCTCCGCCAACACTTT 59.965 55.000 0.00 0.00 0.00 2.66
182 183 0.832135 TCTCTCCTCCGCCAACACTT 60.832 55.000 0.00 0.00 0.00 3.16
183 184 0.616111 ATCTCTCCTCCGCCAACACT 60.616 55.000 0.00 0.00 0.00 3.55
184 185 0.460987 CATCTCTCCTCCGCCAACAC 60.461 60.000 0.00 0.00 0.00 3.32
185 186 0.614697 TCATCTCTCCTCCGCCAACA 60.615 55.000 0.00 0.00 0.00 3.33
186 187 0.537188 TTCATCTCTCCTCCGCCAAC 59.463 55.000 0.00 0.00 0.00 3.77
187 188 0.826715 CTTCATCTCTCCTCCGCCAA 59.173 55.000 0.00 0.00 0.00 4.52
188 189 1.680522 GCTTCATCTCTCCTCCGCCA 61.681 60.000 0.00 0.00 0.00 5.69
189 190 1.068921 GCTTCATCTCTCCTCCGCC 59.931 63.158 0.00 0.00 0.00 6.13
190 191 1.299773 CGCTTCATCTCTCCTCCGC 60.300 63.158 0.00 0.00 0.00 5.54
191 192 1.361993 CCGCTTCATCTCTCCTCCG 59.638 63.158 0.00 0.00 0.00 4.63
192 193 0.103937 CACCGCTTCATCTCTCCTCC 59.896 60.000 0.00 0.00 0.00 4.30
193 194 1.107114 TCACCGCTTCATCTCTCCTC 58.893 55.000 0.00 0.00 0.00 3.71
194 195 1.411977 CATCACCGCTTCATCTCTCCT 59.588 52.381 0.00 0.00 0.00 3.69
195 196 1.410517 TCATCACCGCTTCATCTCTCC 59.589 52.381 0.00 0.00 0.00 3.71
196 197 2.879002 TCATCACCGCTTCATCTCTC 57.121 50.000 0.00 0.00 0.00 3.20
197 198 2.741228 GCTTCATCACCGCTTCATCTCT 60.741 50.000 0.00 0.00 0.00 3.10
198 199 1.596727 GCTTCATCACCGCTTCATCTC 59.403 52.381 0.00 0.00 0.00 2.75
199 200 1.209019 AGCTTCATCACCGCTTCATCT 59.791 47.619 0.00 0.00 0.00 2.90
200 201 1.329906 CAGCTTCATCACCGCTTCATC 59.670 52.381 0.00 0.00 0.00 2.92
201 202 1.376543 CAGCTTCATCACCGCTTCAT 58.623 50.000 0.00 0.00 0.00 2.57
202 203 0.674581 CCAGCTTCATCACCGCTTCA 60.675 55.000 0.00 0.00 0.00 3.02
203 204 0.674895 ACCAGCTTCATCACCGCTTC 60.675 55.000 0.00 0.00 0.00 3.86
204 205 0.957395 CACCAGCTTCATCACCGCTT 60.957 55.000 0.00 0.00 0.00 4.68
205 206 1.376424 CACCAGCTTCATCACCGCT 60.376 57.895 0.00 0.00 0.00 5.52
206 207 2.401766 CCACCAGCTTCATCACCGC 61.402 63.158 0.00 0.00 0.00 5.68
207 208 1.003355 ACCACCAGCTTCATCACCG 60.003 57.895 0.00 0.00 0.00 4.94
208 209 1.021390 CGACCACCAGCTTCATCACC 61.021 60.000 0.00 0.00 0.00 4.02
209 210 0.037326 TCGACCACCAGCTTCATCAC 60.037 55.000 0.00 0.00 0.00 3.06
210 211 0.904649 ATCGACCACCAGCTTCATCA 59.095 50.000 0.00 0.00 0.00 3.07
211 212 2.474816 GTATCGACCACCAGCTTCATC 58.525 52.381 0.00 0.00 0.00 2.92
212 213 1.139058 GGTATCGACCACCAGCTTCAT 59.861 52.381 12.15 0.00 46.12 2.57
213 214 0.535335 GGTATCGACCACCAGCTTCA 59.465 55.000 12.15 0.00 46.12 3.02
214 215 3.364277 GGTATCGACCACCAGCTTC 57.636 57.895 12.15 0.00 46.12 3.86
227 228 6.367422 GGATTCAAGATCTGAACGATGGTATC 59.633 42.308 0.00 0.00 46.80 2.24
228 229 6.042552 AGGATTCAAGATCTGAACGATGGTAT 59.957 38.462 0.00 0.00 46.80 2.73
229 230 5.363868 AGGATTCAAGATCTGAACGATGGTA 59.636 40.000 0.00 0.00 46.80 3.25
230 231 4.163078 AGGATTCAAGATCTGAACGATGGT 59.837 41.667 0.00 0.00 46.80 3.55
231 232 4.510711 CAGGATTCAAGATCTGAACGATGG 59.489 45.833 0.00 0.00 46.80 3.51
232 233 4.025061 GCAGGATTCAAGATCTGAACGATG 60.025 45.833 0.00 4.00 46.80 3.84
233 234 4.125703 GCAGGATTCAAGATCTGAACGAT 58.874 43.478 0.00 0.00 46.80 3.73
234 235 3.196469 AGCAGGATTCAAGATCTGAACGA 59.804 43.478 0.00 0.00 46.80 3.85
235 236 3.529533 AGCAGGATTCAAGATCTGAACG 58.470 45.455 0.00 0.00 46.80 3.95
236 237 3.876320 GGAGCAGGATTCAAGATCTGAAC 59.124 47.826 0.00 0.00 46.80 3.18
238 239 2.437281 GGGAGCAGGATTCAAGATCTGA 59.563 50.000 0.00 0.00 0.00 3.27
239 240 2.438763 AGGGAGCAGGATTCAAGATCTG 59.561 50.000 0.00 0.00 0.00 2.90
240 241 2.705127 GAGGGAGCAGGATTCAAGATCT 59.295 50.000 0.00 0.00 0.00 2.75
241 242 2.224499 GGAGGGAGCAGGATTCAAGATC 60.224 54.545 0.00 0.00 0.00 2.75
242 243 1.773653 GGAGGGAGCAGGATTCAAGAT 59.226 52.381 0.00 0.00 0.00 2.40
243 244 1.207791 GGAGGGAGCAGGATTCAAGA 58.792 55.000 0.00 0.00 0.00 3.02
244 245 0.179062 CGGAGGGAGCAGGATTCAAG 60.179 60.000 0.00 0.00 0.00 3.02
245 246 0.909610 ACGGAGGGAGCAGGATTCAA 60.910 55.000 0.00 0.00 0.00 2.69
246 247 0.909610 AACGGAGGGAGCAGGATTCA 60.910 55.000 0.00 0.00 0.00 2.57
247 248 0.179070 GAACGGAGGGAGCAGGATTC 60.179 60.000 0.00 0.00 0.00 2.52
248 249 1.627297 GGAACGGAGGGAGCAGGATT 61.627 60.000 0.00 0.00 0.00 3.01
249 250 2.066999 GGAACGGAGGGAGCAGGAT 61.067 63.158 0.00 0.00 0.00 3.24
250 251 2.683933 GGAACGGAGGGAGCAGGA 60.684 66.667 0.00 0.00 0.00 3.86
263 264 7.436970 ACAAATCCAAAACAAGTAATTCGGAAC 59.563 33.333 0.00 0.00 0.00 3.62
264 265 7.493367 ACAAATCCAAAACAAGTAATTCGGAA 58.507 30.769 0.00 0.00 0.00 4.30
265 266 7.013846 AGACAAATCCAAAACAAGTAATTCGGA 59.986 33.333 0.00 0.00 0.00 4.55
266 267 7.145323 AGACAAATCCAAAACAAGTAATTCGG 58.855 34.615 0.00 0.00 0.00 4.30
267 268 9.329913 CTAGACAAATCCAAAACAAGTAATTCG 57.670 33.333 0.00 0.00 0.00 3.34
271 272 8.296713 GCATCTAGACAAATCCAAAACAAGTAA 58.703 33.333 0.00 0.00 0.00 2.24
272 273 7.360861 CGCATCTAGACAAATCCAAAACAAGTA 60.361 37.037 0.00 0.00 0.00 2.24
273 274 6.568462 CGCATCTAGACAAATCCAAAACAAGT 60.568 38.462 0.00 0.00 0.00 3.16
274 275 5.796935 CGCATCTAGACAAATCCAAAACAAG 59.203 40.000 0.00 0.00 0.00 3.16
275 276 5.471797 TCGCATCTAGACAAATCCAAAACAA 59.528 36.000 0.00 0.00 0.00 2.83
276 277 5.000591 TCGCATCTAGACAAATCCAAAACA 58.999 37.500 0.00 0.00 0.00 2.83
277 278 5.545658 TCGCATCTAGACAAATCCAAAAC 57.454 39.130 0.00 0.00 0.00 2.43
278 279 6.757897 ATTCGCATCTAGACAAATCCAAAA 57.242 33.333 0.00 0.00 0.00 2.44
279 280 9.725019 ATATATTCGCATCTAGACAAATCCAAA 57.275 29.630 0.00 0.00 0.00 3.28
280 281 9.154847 CATATATTCGCATCTAGACAAATCCAA 57.845 33.333 0.00 0.00 0.00 3.53
281 282 8.314021 ACATATATTCGCATCTAGACAAATCCA 58.686 33.333 0.00 0.00 0.00 3.41
282 283 8.709386 ACATATATTCGCATCTAGACAAATCC 57.291 34.615 0.00 0.00 0.00 3.01
310 311 9.886132 ACGAAGGTATCTAACACTAAAATGAAT 57.114 29.630 0.00 0.00 0.00 2.57
345 346 8.512138 CCGTTCCAAATTACTTGTCTTAGATTT 58.488 33.333 0.00 0.00 32.65 2.17
346 347 7.881232 TCCGTTCCAAATTACTTGTCTTAGATT 59.119 33.333 0.00 0.00 32.65 2.40
347 348 7.391620 TCCGTTCCAAATTACTTGTCTTAGAT 58.608 34.615 0.00 0.00 32.65 1.98
348 349 6.761312 TCCGTTCCAAATTACTTGTCTTAGA 58.239 36.000 0.00 0.00 32.65 2.10
349 350 6.092259 CCTCCGTTCCAAATTACTTGTCTTAG 59.908 42.308 0.00 0.00 32.65 2.18
350 351 5.935789 CCTCCGTTCCAAATTACTTGTCTTA 59.064 40.000 0.00 0.00 32.65 2.10
351 352 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
352 353 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
353 354 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
354 355 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
355 356 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
356 357 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
357 358 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
358 359 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
359 360 3.119029 CGTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
360 361 2.354403 CGTACTCCCTCCGTTCCAAATT 60.354 50.000 0.00 0.00 0.00 1.82
361 362 1.206371 CGTACTCCCTCCGTTCCAAAT 59.794 52.381 0.00 0.00 0.00 2.32
362 363 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
363 364 0.251297 TCGTACTCCCTCCGTTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
364 365 0.033796 ATCGTACTCCCTCCGTTCCA 60.034 55.000 0.00 0.00 0.00 3.53
365 366 0.384669 CATCGTACTCCCTCCGTTCC 59.615 60.000 0.00 0.00 0.00 3.62
366 367 0.248949 GCATCGTACTCCCTCCGTTC 60.249 60.000 0.00 0.00 0.00 3.95
367 368 0.683504 AGCATCGTACTCCCTCCGTT 60.684 55.000 0.00 0.00 0.00 4.44
368 369 0.683504 AAGCATCGTACTCCCTCCGT 60.684 55.000 0.00 0.00 0.00 4.69
369 370 0.249073 CAAGCATCGTACTCCCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
370 371 0.824759 ACAAGCATCGTACTCCCTCC 59.175 55.000 0.00 0.00 0.00 4.30
371 372 2.271800 CAACAAGCATCGTACTCCCTC 58.728 52.381 0.00 0.00 0.00 4.30
372 373 1.676014 GCAACAAGCATCGTACTCCCT 60.676 52.381 0.00 0.00 44.79 4.20
373 374 0.727398 GCAACAAGCATCGTACTCCC 59.273 55.000 0.00 0.00 44.79 4.30
383 384 8.975827 CACTATTTTATAGTGGGGCAACAAGCA 61.976 40.741 15.73 0.00 42.04 3.91
384 385 4.736126 ATTTTATAGTGGGGCAACAAGC 57.264 40.909 0.00 0.00 44.65 4.01
385 386 6.795399 CACTATTTTATAGTGGGGCAACAAG 58.205 40.000 15.73 0.00 40.76 3.16
386 387 6.767524 CACTATTTTATAGTGGGGCAACAA 57.232 37.500 15.73 0.00 40.76 2.83
395 396 7.934120 CCCCTCTCTTTCCACTATTTTATAGTG 59.066 40.741 16.32 16.32 43.26 2.74
396 397 7.849904 TCCCCTCTCTTTCCACTATTTTATAGT 59.150 37.037 0.00 0.00 0.00 2.12
397 398 8.263854 TCCCCTCTCTTTCCACTATTTTATAG 57.736 38.462 0.00 0.00 0.00 1.31
398 399 8.071854 TCTCCCCTCTCTTTCCACTATTTTATA 58.928 37.037 0.00 0.00 0.00 0.98
399 400 6.909158 TCTCCCCTCTCTTTCCACTATTTTAT 59.091 38.462 0.00 0.00 0.00 1.40
400 401 6.269194 TCTCCCCTCTCTTTCCACTATTTTA 58.731 40.000 0.00 0.00 0.00 1.52
401 402 5.101529 TCTCCCCTCTCTTTCCACTATTTT 58.898 41.667 0.00 0.00 0.00 1.82
402 403 4.699994 TCTCCCCTCTCTTTCCACTATTT 58.300 43.478 0.00 0.00 0.00 1.40
403 404 4.265078 ACTCTCCCCTCTCTTTCCACTATT 60.265 45.833 0.00 0.00 0.00 1.73
404 405 3.273618 ACTCTCCCCTCTCTTTCCACTAT 59.726 47.826 0.00 0.00 0.00 2.12
405 406 2.655407 ACTCTCCCCTCTCTTTCCACTA 59.345 50.000 0.00 0.00 0.00 2.74
406 407 1.435168 ACTCTCCCCTCTCTTTCCACT 59.565 52.381 0.00 0.00 0.00 4.00
407 408 1.552792 CACTCTCCCCTCTCTTTCCAC 59.447 57.143 0.00 0.00 0.00 4.02
408 409 1.433199 TCACTCTCCCCTCTCTTTCCA 59.567 52.381 0.00 0.00 0.00 3.53
409 410 2.107366 CTCACTCTCCCCTCTCTTTCC 58.893 57.143 0.00 0.00 0.00 3.13
410 411 1.480545 GCTCACTCTCCCCTCTCTTTC 59.519 57.143 0.00 0.00 0.00 2.62
411 412 1.567357 GCTCACTCTCCCCTCTCTTT 58.433 55.000 0.00 0.00 0.00 2.52
412 413 0.682855 CGCTCACTCTCCCCTCTCTT 60.683 60.000 0.00 0.00 0.00 2.85
413 414 1.077068 CGCTCACTCTCCCCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
414 415 2.124693 CCGCTCACTCTCCCCTCTC 61.125 68.421 0.00 0.00 0.00 3.20
415 416 2.043450 CCGCTCACTCTCCCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
416 417 2.363147 ACCGCTCACTCTCCCCTC 60.363 66.667 0.00 0.00 0.00 4.30
417 418 2.681778 CACCGCTCACTCTCCCCT 60.682 66.667 0.00 0.00 0.00 4.79
418 419 2.680352 TCACCGCTCACTCTCCCC 60.680 66.667 0.00 0.00 0.00 4.81
419 420 1.251527 TTCTCACCGCTCACTCTCCC 61.252 60.000 0.00 0.00 0.00 4.30
420 421 0.603569 TTTCTCACCGCTCACTCTCC 59.396 55.000 0.00 0.00 0.00 3.71
421 422 1.403514 CCTTTCTCACCGCTCACTCTC 60.404 57.143 0.00 0.00 0.00 3.20
422 423 0.605589 CCTTTCTCACCGCTCACTCT 59.394 55.000 0.00 0.00 0.00 3.24
423 424 0.603569 TCCTTTCTCACCGCTCACTC 59.396 55.000 0.00 0.00 0.00 3.51
424 425 0.605589 CTCCTTTCTCACCGCTCACT 59.394 55.000 0.00 0.00 0.00 3.41
425 426 1.016653 GCTCCTTTCTCACCGCTCAC 61.017 60.000 0.00 0.00 0.00 3.51
426 427 1.293498 GCTCCTTTCTCACCGCTCA 59.707 57.895 0.00 0.00 0.00 4.26
427 428 1.807573 CGCTCCTTTCTCACCGCTC 60.808 63.158 0.00 0.00 0.00 5.03
428 429 2.219325 CTCGCTCCTTTCTCACCGCT 62.219 60.000 0.00 0.00 0.00 5.52
429 430 1.807573 CTCGCTCCTTTCTCACCGC 60.808 63.158 0.00 0.00 0.00 5.68
430 431 1.153745 CCTCGCTCCTTTCTCACCG 60.154 63.158 0.00 0.00 0.00 4.94
431 432 1.219393 CCCTCGCTCCTTTCTCACC 59.781 63.158 0.00 0.00 0.00 4.02
432 433 1.219393 CCCCTCGCTCCTTTCTCAC 59.781 63.158 0.00 0.00 0.00 3.51
433 434 0.325671 ATCCCCTCGCTCCTTTCTCA 60.326 55.000 0.00 0.00 0.00 3.27
434 435 0.833949 AATCCCCTCGCTCCTTTCTC 59.166 55.000 0.00 0.00 0.00 2.87
435 436 1.290134 AAATCCCCTCGCTCCTTTCT 58.710 50.000 0.00 0.00 0.00 2.52
436 437 3.493767 ATAAATCCCCTCGCTCCTTTC 57.506 47.619 0.00 0.00 0.00 2.62
437 438 3.555966 CAATAAATCCCCTCGCTCCTTT 58.444 45.455 0.00 0.00 0.00 3.11
438 439 2.749800 GCAATAAATCCCCTCGCTCCTT 60.750 50.000 0.00 0.00 0.00 3.36
439 440 1.202818 GCAATAAATCCCCTCGCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
440 441 1.239347 GCAATAAATCCCCTCGCTCC 58.761 55.000 0.00 0.00 0.00 4.70
441 442 1.604278 GTGCAATAAATCCCCTCGCTC 59.396 52.381 0.00 0.00 0.00 5.03
442 443 1.680338 GTGCAATAAATCCCCTCGCT 58.320 50.000 0.00 0.00 0.00 4.93
443 444 0.668535 GGTGCAATAAATCCCCTCGC 59.331 55.000 0.00 0.00 0.00 5.03
444 445 0.944386 CGGTGCAATAAATCCCCTCG 59.056 55.000 0.00 0.00 0.00 4.63
445 446 0.668535 GCGGTGCAATAAATCCCCTC 59.331 55.000 0.00 0.00 0.00 4.30
446 447 0.258774 AGCGGTGCAATAAATCCCCT 59.741 50.000 0.00 0.00 0.00 4.79
447 448 1.067060 GAAGCGGTGCAATAAATCCCC 59.933 52.381 0.00 0.00 0.00 4.81
448 449 1.268539 CGAAGCGGTGCAATAAATCCC 60.269 52.381 0.00 0.00 0.00 3.85
449 450 1.400494 ACGAAGCGGTGCAATAAATCC 59.600 47.619 0.00 0.00 0.00 3.01
450 451 2.825086 ACGAAGCGGTGCAATAAATC 57.175 45.000 0.00 0.00 0.00 2.17
451 452 4.688511 TTTACGAAGCGGTGCAATAAAT 57.311 36.364 0.00 0.00 0.00 1.40
452 453 4.220572 GTTTTACGAAGCGGTGCAATAAA 58.779 39.130 0.00 0.00 0.00 1.40
453 454 3.250280 TGTTTTACGAAGCGGTGCAATAA 59.750 39.130 0.00 0.00 0.00 1.40
454 455 2.806818 TGTTTTACGAAGCGGTGCAATA 59.193 40.909 0.00 0.00 0.00 1.90
455 456 1.604755 TGTTTTACGAAGCGGTGCAAT 59.395 42.857 0.00 0.00 0.00 3.56
456 457 1.015109 TGTTTTACGAAGCGGTGCAA 58.985 45.000 0.00 0.00 0.00 4.08
457 458 1.015109 TTGTTTTACGAAGCGGTGCA 58.985 45.000 0.00 0.00 0.00 4.57
458 459 1.391787 GTTGTTTTACGAAGCGGTGC 58.608 50.000 0.00 0.00 0.00 5.01
459 460 1.654463 CGTTGTTTTACGAAGCGGTG 58.346 50.000 0.00 0.00 43.99 4.94
460 461 0.041926 GCGTTGTTTTACGAAGCGGT 60.042 50.000 0.00 0.00 43.99 5.68
461 462 2.691486 GCGTTGTTTTACGAAGCGG 58.309 52.632 0.00 0.00 43.99 5.52
463 464 1.325210 GGCGCGTTGTTTTACGAAGC 61.325 55.000 8.43 0.00 43.99 3.86
464 465 0.042013 TGGCGCGTTGTTTTACGAAG 60.042 50.000 8.43 0.00 43.99 3.79
465 466 0.587285 ATGGCGCGTTGTTTTACGAA 59.413 45.000 8.43 0.00 43.99 3.85
466 467 0.110599 CATGGCGCGTTGTTTTACGA 60.111 50.000 8.43 0.00 43.99 3.43
467 468 0.384974 ACATGGCGCGTTGTTTTACG 60.385 50.000 8.43 0.00 44.09 3.18
468 469 1.049251 CACATGGCGCGTTGTTTTAC 58.951 50.000 8.43 0.00 0.00 2.01
469 470 0.945099 TCACATGGCGCGTTGTTTTA 59.055 45.000 8.43 0.00 0.00 1.52
470 471 0.593773 GTCACATGGCGCGTTGTTTT 60.594 50.000 8.43 0.00 0.00 2.43
471 472 1.008995 GTCACATGGCGCGTTGTTT 60.009 52.632 8.43 0.00 0.00 2.83
472 473 2.637025 GTCACATGGCGCGTTGTT 59.363 55.556 8.43 0.00 0.00 2.83
473 474 3.711842 CGTCACATGGCGCGTTGT 61.712 61.111 8.43 4.42 35.94 3.32
480 481 2.173382 GAACGTGCGTCACATGGC 59.827 61.111 9.95 0.00 39.81 4.40
481 482 2.860293 GGAACGTGCGTCACATGG 59.140 61.111 9.95 0.00 39.81 3.66
494 495 0.373716 GAACATCATCGCACCGGAAC 59.626 55.000 9.46 0.00 0.00 3.62
495 496 0.249120 AGAACATCATCGCACCGGAA 59.751 50.000 9.46 0.00 0.00 4.30
496 497 0.249120 AAGAACATCATCGCACCGGA 59.751 50.000 9.46 0.00 0.00 5.14
497 498 0.652592 GAAGAACATCATCGCACCGG 59.347 55.000 0.00 0.00 0.00 5.28
498 499 1.325640 CAGAAGAACATCATCGCACCG 59.674 52.381 0.00 0.00 0.00 4.94
499 500 1.063174 GCAGAAGAACATCATCGCACC 59.937 52.381 0.00 0.00 0.00 5.01
500 501 1.063174 GGCAGAAGAACATCATCGCAC 59.937 52.381 0.00 0.00 0.00 5.34
501 502 1.338960 TGGCAGAAGAACATCATCGCA 60.339 47.619 0.00 0.00 0.00 5.10
502 503 1.063174 GTGGCAGAAGAACATCATCGC 59.937 52.381 0.00 0.00 0.00 4.58
503 504 1.325640 CGTGGCAGAAGAACATCATCG 59.674 52.381 0.00 0.00 0.00 3.84
506 507 0.035317 AGCGTGGCAGAAGAACATCA 59.965 50.000 0.00 0.00 0.00 3.07
524 525 3.116300 CGACGTTAGGGATGATTCACAG 58.884 50.000 0.00 0.00 0.00 3.66
525 526 2.756207 TCGACGTTAGGGATGATTCACA 59.244 45.455 0.00 0.00 0.00 3.58
529 530 2.019249 TCGTCGACGTTAGGGATGATT 58.981 47.619 34.40 0.00 40.80 2.57
542 543 2.804090 GCCAGGTTCGTCGTCGAC 60.804 66.667 15.51 15.51 46.03 4.20
567 568 5.402270 GCTTTGGCACATGTTTTTAGTGTAG 59.598 40.000 0.00 0.00 39.30 2.74
595 610 4.572571 TGTTGGGTGGGACGTGGC 62.573 66.667 0.00 0.00 0.00 5.01
603 618 0.678950 GTTTCATGGGTGTTGGGTGG 59.321 55.000 0.00 0.00 0.00 4.61
604 619 1.340889 CTGTTTCATGGGTGTTGGGTG 59.659 52.381 0.00 0.00 0.00 4.61
605 620 1.703411 CTGTTTCATGGGTGTTGGGT 58.297 50.000 0.00 0.00 0.00 4.51
606 621 0.968405 CCTGTTTCATGGGTGTTGGG 59.032 55.000 0.00 0.00 0.00 4.12
607 622 1.613437 GACCTGTTTCATGGGTGTTGG 59.387 52.381 0.00 0.00 33.01 3.77
608 623 1.266718 CGACCTGTTTCATGGGTGTTG 59.733 52.381 0.00 0.00 33.01 3.33
609 624 1.142060 TCGACCTGTTTCATGGGTGTT 59.858 47.619 0.00 0.00 33.01 3.32
610 625 0.762418 TCGACCTGTTTCATGGGTGT 59.238 50.000 0.00 0.00 33.01 4.16
674 689 3.676324 CGGAACAGAGGAACAGTATGACC 60.676 52.174 0.00 0.00 39.69 4.02
786 5680 2.611722 GCTTCTTGTCTCTGACTGGACC 60.612 54.545 0.00 0.00 33.15 4.46
787 5681 2.682836 GCTTCTTGTCTCTGACTGGAC 58.317 52.381 0.00 0.00 33.15 4.02
788 5682 1.270826 CGCTTCTTGTCTCTGACTGGA 59.729 52.381 0.00 0.00 33.15 3.86
790 5684 1.066914 GCGCTTCTTGTCTCTGACTG 58.933 55.000 0.00 0.00 33.15 3.51
791 5685 0.965439 AGCGCTTCTTGTCTCTGACT 59.035 50.000 2.64 0.00 33.15 3.41
849 5757 3.127203 AGCTCAGTGATGAGTACACGTAC 59.873 47.826 7.07 0.00 42.25 3.67
850 5758 3.344515 AGCTCAGTGATGAGTACACGTA 58.655 45.455 7.07 0.00 42.25 3.57
851 5759 2.162608 GAGCTCAGTGATGAGTACACGT 59.837 50.000 9.40 0.00 42.25 4.49
852 5760 2.421775 AGAGCTCAGTGATGAGTACACG 59.578 50.000 17.77 0.00 42.25 4.49
905 5817 5.593968 TCGTGTGTTTTGCTTCTAACTCTA 58.406 37.500 0.00 0.00 0.00 2.43
910 5822 3.002246 CAGCTCGTGTGTTTTGCTTCTAA 59.998 43.478 0.00 0.00 0.00 2.10
934 5853 1.072965 GGATCCTGTGATGGGATGGAC 59.927 57.143 3.84 0.00 42.91 4.02
952 5874 2.445525 ACTTGTTGCTAAAGGGGAAGGA 59.554 45.455 0.00 0.00 0.00 3.36
973 5895 2.135139 CTGACTGAGTACGCAGCAAAA 58.865 47.619 24.40 8.39 39.51 2.44
982 5927 3.793801 GCCATCGATCACTGACTGAGTAC 60.794 52.174 0.00 0.00 31.73 2.73
1119 6064 2.289195 CCAGGCCGTGTAGTTGAAGTTA 60.289 50.000 0.00 0.00 0.00 2.24
1143 6088 0.314302 CGACGAACTGGTTGGTCTCT 59.686 55.000 20.25 0.00 43.28 3.10
1218 6170 1.155042 GAAGCATGGCGAGATGGATC 58.845 55.000 0.00 0.00 0.00 3.36
1221 6173 0.745486 TGTGAAGCATGGCGAGATGG 60.745 55.000 0.00 0.00 0.00 3.51
1245 6204 2.126149 CAAGACAGAGAGCGCGCT 60.126 61.111 37.28 37.28 0.00 5.92
1266 6225 1.993370 CGAGCAGTTTAGTTTCCGAGG 59.007 52.381 0.00 0.00 0.00 4.63
1267 6226 1.390463 GCGAGCAGTTTAGTTTCCGAG 59.610 52.381 0.00 0.00 0.00 4.63
1298 6259 9.008965 ACTTGAACACTGCAATATATTAACACA 57.991 29.630 0.00 0.00 0.00 3.72
1305 6266 8.560355 TGTTGTACTTGAACACTGCAATATAT 57.440 30.769 0.00 0.00 0.00 0.86
1482 6444 0.321346 TGAGCTTCATGCCGTTCTCA 59.679 50.000 0.00 0.00 44.23 3.27
1653 6644 7.244898 GTCGCTCACATATATAGAAGATCGTT 58.755 38.462 0.00 0.00 0.00 3.85
1694 6686 8.071368 ACATACACAAATACACTAAAAACCACG 58.929 33.333 0.00 0.00 0.00 4.94
1695 6687 9.176181 CACATACACAAATACACTAAAAACCAC 57.824 33.333 0.00 0.00 0.00 4.16
1696 6688 8.353684 CCACATACACAAATACACTAAAAACCA 58.646 33.333 0.00 0.00 0.00 3.67
1697 6689 8.354426 ACCACATACACAAATACACTAAAAACC 58.646 33.333 0.00 0.00 0.00 3.27
1698 6690 9.389570 GACCACATACACAAATACACTAAAAAC 57.610 33.333 0.00 0.00 0.00 2.43
1704 6696 4.688879 CACGACCACATACACAAATACACT 59.311 41.667 0.00 0.00 0.00 3.55
1705 6697 4.668177 GCACGACCACATACACAAATACAC 60.668 45.833 0.00 0.00 0.00 2.90
1762 6754 9.183368 AGAAAAATAGAAGGGCTCAAATTAGAG 57.817 33.333 0.00 0.00 38.68 2.43
1813 6807 8.659925 TGTTCAACACCGATAACTTTACTAAA 57.340 30.769 0.00 0.00 0.00 1.85
1828 6822 6.595326 TGACATCATCTATCTTGTTCAACACC 59.405 38.462 0.00 0.00 0.00 4.16
1873 6877 6.962686 ACACTCGGGTTAAAGTAATTCAAAC 58.037 36.000 0.00 0.00 0.00 2.93
1874 6878 6.073657 CGACACTCGGGTTAAAGTAATTCAAA 60.074 38.462 0.00 0.00 36.00 2.69
1947 6951 3.005472 TGTCCTCAGGTGAACTAGTTTCG 59.995 47.826 10.02 0.00 36.97 3.46
2002 8152 5.828299 TCGAAACTTTCTTTTGGTGACAT 57.172 34.783 0.12 0.00 42.32 3.06
2034 8184 6.260936 CAGTCCAGTCTAGAAAAAGAGCAAAA 59.739 38.462 0.00 0.00 0.00 2.44
2035 8185 5.760253 CAGTCCAGTCTAGAAAAAGAGCAAA 59.240 40.000 0.00 0.00 0.00 3.68
2036 8186 5.070446 TCAGTCCAGTCTAGAAAAAGAGCAA 59.930 40.000 0.00 0.00 0.00 3.91
2037 8187 4.588951 TCAGTCCAGTCTAGAAAAAGAGCA 59.411 41.667 0.00 0.00 0.00 4.26
2038 8188 5.140747 TCAGTCCAGTCTAGAAAAAGAGC 57.859 43.478 0.00 0.00 0.00 4.09
2039 8189 8.527810 ACTTATCAGTCCAGTCTAGAAAAAGAG 58.472 37.037 0.00 0.00 0.00 2.85
2040 8190 8.423906 ACTTATCAGTCCAGTCTAGAAAAAGA 57.576 34.615 0.00 0.00 0.00 2.52
2052 9160 8.608844 AAACAGTTCTTAACTTATCAGTCCAG 57.391 34.615 0.00 0.00 40.46 3.86
2147 9257 9.643693 CAAGCTTTTATATTCCACAGAAATTGT 57.356 29.630 0.00 0.00 41.94 2.71
2421 10413 9.995003 TTTTGTACAATTATCAAAGCTTGGATT 57.005 25.926 21.38 5.96 33.61 3.01
2422 10414 9.995003 TTTTTGTACAATTATCAAAGCTTGGAT 57.005 25.926 20.13 20.13 33.61 3.41
2484 10476 9.480053 CAAATGTGTGTATGGAAAGAAAGATTT 57.520 29.630 0.00 0.00 0.00 2.17
2485 10477 8.641541 ACAAATGTGTGTATGGAAAGAAAGATT 58.358 29.630 0.00 0.00 36.31 2.40
2486 10478 8.181904 ACAAATGTGTGTATGGAAAGAAAGAT 57.818 30.769 0.00 0.00 36.31 2.40
2487 10479 7.284261 TGACAAATGTGTGTATGGAAAGAAAGA 59.716 33.333 0.00 0.00 38.41 2.52
2488 10480 7.424803 TGACAAATGTGTGTATGGAAAGAAAG 58.575 34.615 0.00 0.00 38.41 2.62
2489 10481 7.340122 TGACAAATGTGTGTATGGAAAGAAA 57.660 32.000 0.00 0.00 38.41 2.52
2490 10482 6.951062 TGACAAATGTGTGTATGGAAAGAA 57.049 33.333 0.00 0.00 38.41 2.52
2491 10483 6.951062 TTGACAAATGTGTGTATGGAAAGA 57.049 33.333 0.00 0.00 38.41 2.52
2492 10484 8.417780 TTTTTGACAAATGTGTGTATGGAAAG 57.582 30.769 0.50 0.00 38.41 2.62
2493 10485 8.824781 CATTTTTGACAAATGTGTGTATGGAAA 58.175 29.630 0.50 0.00 38.41 3.13
2494 10486 8.200120 TCATTTTTGACAAATGTGTGTATGGAA 58.800 29.630 0.50 0.00 38.41 3.53
2495 10487 7.720442 TCATTTTTGACAAATGTGTGTATGGA 58.280 30.769 0.50 0.00 38.41 3.41
2496 10488 7.943413 TCATTTTTGACAAATGTGTGTATGG 57.057 32.000 0.50 0.00 38.41 2.74
2497 10489 9.194271 TGATCATTTTTGACAAATGTGTGTATG 57.806 29.630 0.50 0.00 38.41 2.39
2498 10490 9.761504 TTGATCATTTTTGACAAATGTGTGTAT 57.238 25.926 0.50 0.00 38.41 2.29
2499 10491 9.029243 GTTGATCATTTTTGACAAATGTGTGTA 57.971 29.630 0.50 0.00 38.41 2.90
2500 10492 7.011295 GGTTGATCATTTTTGACAAATGTGTGT 59.989 33.333 0.50 0.00 38.41 3.72
2501 10493 7.225145 AGGTTGATCATTTTTGACAAATGTGTG 59.775 33.333 0.50 0.00 38.41 3.82
2502 10494 7.274447 AGGTTGATCATTTTTGACAAATGTGT 58.726 30.769 0.50 0.00 42.10 3.72
2503 10495 7.718272 AGGTTGATCATTTTTGACAAATGTG 57.282 32.000 0.50 4.34 38.44 3.21
2504 10496 9.643693 GATAGGTTGATCATTTTTGACAAATGT 57.356 29.630 0.50 0.00 38.44 2.71
2505 10497 9.642327 TGATAGGTTGATCATTTTTGACAAATG 57.358 29.630 0.50 0.00 38.60 2.32
2552 10544 9.430623 ACAAAAAGCAAGTTTTACACTGTAAAT 57.569 25.926 13.88 0.00 37.37 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.