Multiple sequence alignment - TraesCS5A01G430400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G430400 chr5A 100.000 2471 0 0 1 2471 614341136 614338666 0.000000e+00 4564
1 TraesCS5A01G430400 chr5A 96.432 2018 53 4 1 2016 667816886 667814886 0.000000e+00 3310
2 TraesCS5A01G430400 chr5A 98.856 437 5 0 2035 2471 667754602 667754166 0.000000e+00 780
3 TraesCS5A01G430400 chr2A 98.187 1931 32 3 89 2016 755511558 755509628 0.000000e+00 3369
4 TraesCS5A01G430400 chr2A 98.409 440 7 0 2032 2471 10052491 10052930 0.000000e+00 774
5 TraesCS5A01G430400 chr4D 97.250 1891 48 4 129 2016 123518602 123516713 0.000000e+00 3201
6 TraesCS5A01G430400 chr4D 96.552 116 2 1 31 144 123275429 123275544 9.020000e-45 191
7 TraesCS5A01G430400 chrUn 97.607 1546 36 1 142 1686 237255586 237254041 0.000000e+00 2649
8 TraesCS5A01G430400 chrUn 97.607 1546 36 1 142 1686 371043214 371041669 0.000000e+00 2649
9 TraesCS5A01G430400 chrUn 98.636 440 6 0 2032 2471 406473279 406473718 0.000000e+00 780
10 TraesCS5A01G430400 chrUn 98.398 437 7 0 2035 2471 171010403 171009967 0.000000e+00 769
11 TraesCS5A01G430400 chrUn 99.091 110 1 0 35 144 86444840 86444949 5.390000e-47 198
12 TraesCS5A01G430400 chrUn 99.091 110 1 0 35 144 206782009 206782118 5.390000e-47 198
13 TraesCS5A01G430400 chr7D 97.540 1545 37 1 142 1686 579017825 579019368 0.000000e+00 2641
14 TraesCS5A01G430400 chr1A 96.057 1547 54 4 142 1686 238107495 238105954 0.000000e+00 2512
15 TraesCS5A01G430400 chr1A 95.868 1549 56 5 142 1686 238152880 238151336 0.000000e+00 2499
16 TraesCS5A01G430400 chr7A 95.610 1549 58 6 142 1686 60326760 60325218 0.000000e+00 2475
17 TraesCS5A01G430400 chr7A 96.552 116 2 1 31 144 120857781 120857666 9.020000e-45 191
18 TraesCS5A01G430400 chr5D 97.517 1047 14 2 971 2016 562921490 562920455 0.000000e+00 1779
19 TraesCS5A01G430400 chr6B 98.636 440 6 0 2032 2471 596599737 596600176 0.000000e+00 780
20 TraesCS5A01G430400 chr6B 97.414 116 1 1 31 144 394456995 394457110 1.940000e-46 196
21 TraesCS5A01G430400 chr4B 98.856 437 5 0 2035 2471 495570078 495569642 0.000000e+00 780
22 TraesCS5A01G430400 chr4B 98.398 437 7 0 2035 2471 495547084 495546648 0.000000e+00 769
23 TraesCS5A01G430400 chr4A 98.636 440 6 0 2032 2471 79642654 79643093 0.000000e+00 780
24 TraesCS5A01G430400 chr1B 98.398 437 7 0 2035 2471 672543341 672542905 0.000000e+00 769
25 TraesCS5A01G430400 chr3D 96.552 116 2 1 31 144 523766688 523766803 9.020000e-45 191
26 TraesCS5A01G430400 chr3A 96.552 116 2 1 31 144 633131373 633131488 9.020000e-45 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G430400 chr5A 614338666 614341136 2470 True 4564 4564 100.000 1 2471 1 chr5A.!!$R1 2470
1 TraesCS5A01G430400 chr5A 667814886 667816886 2000 True 3310 3310 96.432 1 2016 1 chr5A.!!$R3 2015
2 TraesCS5A01G430400 chr2A 755509628 755511558 1930 True 3369 3369 98.187 89 2016 1 chr2A.!!$R1 1927
3 TraesCS5A01G430400 chr4D 123516713 123518602 1889 True 3201 3201 97.250 129 2016 1 chr4D.!!$R1 1887
4 TraesCS5A01G430400 chrUn 237254041 237255586 1545 True 2649 2649 97.607 142 1686 1 chrUn.!!$R2 1544
5 TraesCS5A01G430400 chrUn 371041669 371043214 1545 True 2649 2649 97.607 142 1686 1 chrUn.!!$R3 1544
6 TraesCS5A01G430400 chr7D 579017825 579019368 1543 False 2641 2641 97.540 142 1686 1 chr7D.!!$F1 1544
7 TraesCS5A01G430400 chr1A 238105954 238107495 1541 True 2512 2512 96.057 142 1686 1 chr1A.!!$R1 1544
8 TraesCS5A01G430400 chr1A 238151336 238152880 1544 True 2499 2499 95.868 142 1686 1 chr1A.!!$R2 1544
9 TraesCS5A01G430400 chr7A 60325218 60326760 1542 True 2475 2475 95.610 142 1686 1 chr7A.!!$R1 1544
10 TraesCS5A01G430400 chr5D 562920455 562921490 1035 True 1779 1779 97.517 971 2016 1 chr5D.!!$R1 1045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 869 1.451387 GGGGATGCACAAGGGTACG 60.451 63.158 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2124 2134 0.036388 GATCCCCAGCTTCGACAACA 60.036 55.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 4.237445 TGGAAAAACCAACGCCGA 57.763 50.000 0.00 0.00 46.75 5.54
71 73 3.680525 CGCCGACGTCAAGATCAG 58.319 61.111 17.16 0.00 33.53 2.90
137 139 5.105797 TGGGAAATTCCAATGATTCTTCGTG 60.106 40.000 14.68 0.00 38.64 4.35
587 589 3.945436 ACGCAAGCGAATTCGTCA 58.055 50.000 27.24 0.00 42.83 4.35
866 869 1.451387 GGGGATGCACAAGGGTACG 60.451 63.158 0.00 0.00 0.00 3.67
940 943 4.042684 AGTTCTTCCCTCTTGATGCTTTCT 59.957 41.667 0.00 0.00 0.00 2.52
1674 1683 3.310954 TGGGATAGAAGAGAGGGAAAGCT 60.311 47.826 0.00 0.00 0.00 3.74
1940 1950 4.327982 TCCAGCTAATTCTCAGATTCCG 57.672 45.455 0.00 0.00 0.00 4.30
2027 2037 7.962995 TCTGTTTTAAATGGTATATTGGGCA 57.037 32.000 0.00 0.00 0.00 5.36
2028 2038 8.546083 TCTGTTTTAAATGGTATATTGGGCAT 57.454 30.769 0.00 0.00 0.00 4.40
2029 2039 9.647918 TCTGTTTTAAATGGTATATTGGGCATA 57.352 29.630 0.00 0.00 0.00 3.14
2030 2040 9.912634 CTGTTTTAAATGGTATATTGGGCATAG 57.087 33.333 0.00 0.00 0.00 2.23
2031 2041 9.427821 TGTTTTAAATGGTATATTGGGCATAGT 57.572 29.630 0.00 0.00 0.00 2.12
2035 2045 9.875708 TTAAATGGTATATTGGGCATAGTTTCT 57.124 29.630 0.00 0.00 0.00 2.52
2036 2046 8.409358 AAATGGTATATTGGGCATAGTTTCTC 57.591 34.615 0.00 0.00 0.00 2.87
2037 2047 6.763715 TGGTATATTGGGCATAGTTTCTCT 57.236 37.500 0.00 0.00 0.00 3.10
2038 2048 7.149202 TGGTATATTGGGCATAGTTTCTCTT 57.851 36.000 0.00 0.00 0.00 2.85
2039 2049 8.270137 TGGTATATTGGGCATAGTTTCTCTTA 57.730 34.615 0.00 0.00 0.00 2.10
2040 2050 8.719596 TGGTATATTGGGCATAGTTTCTCTTAA 58.280 33.333 0.00 0.00 0.00 1.85
2041 2051 9.220767 GGTATATTGGGCATAGTTTCTCTTAAG 57.779 37.037 0.00 0.00 0.00 1.85
2042 2052 9.998106 GTATATTGGGCATAGTTTCTCTTAAGA 57.002 33.333 4.81 4.81 0.00 2.10
2044 2054 5.359194 TGGGCATAGTTTCTCTTAAGAGG 57.641 43.478 28.09 13.80 42.30 3.69
2045 2055 4.783227 TGGGCATAGTTTCTCTTAAGAGGT 59.217 41.667 28.09 15.03 42.30 3.85
2046 2056 5.119694 GGGCATAGTTTCTCTTAAGAGGTG 58.880 45.833 28.09 18.16 42.30 4.00
2047 2057 5.338463 GGGCATAGTTTCTCTTAAGAGGTGT 60.338 44.000 28.09 15.03 42.30 4.16
2048 2058 6.127140 GGGCATAGTTTCTCTTAAGAGGTGTA 60.127 42.308 28.09 16.41 42.30 2.90
2049 2059 7.328737 GGCATAGTTTCTCTTAAGAGGTGTAA 58.671 38.462 28.09 14.78 42.30 2.41
2050 2060 7.988028 GGCATAGTTTCTCTTAAGAGGTGTAAT 59.012 37.037 28.09 15.61 42.30 1.89
2051 2061 9.384764 GCATAGTTTCTCTTAAGAGGTGTAATT 57.615 33.333 28.09 16.82 42.30 1.40
2055 2065 8.652290 AGTTTCTCTTAAGAGGTGTAATTCTGT 58.348 33.333 28.09 2.88 42.30 3.41
2056 2066 9.274206 GTTTCTCTTAAGAGGTGTAATTCTGTT 57.726 33.333 28.09 0.00 42.30 3.16
2057 2067 9.847224 TTTCTCTTAAGAGGTGTAATTCTGTTT 57.153 29.630 28.09 0.00 42.30 2.83
2058 2068 8.833231 TCTCTTAAGAGGTGTAATTCTGTTTG 57.167 34.615 28.09 1.90 42.30 2.93
2059 2069 7.878127 TCTCTTAAGAGGTGTAATTCTGTTTGG 59.122 37.037 28.09 1.57 42.30 3.28
2060 2070 6.940298 TCTTAAGAGGTGTAATTCTGTTTGGG 59.060 38.462 0.00 0.00 0.00 4.12
2061 2071 4.034285 AGAGGTGTAATTCTGTTTGGGG 57.966 45.455 0.00 0.00 0.00 4.96
2062 2072 3.655777 AGAGGTGTAATTCTGTTTGGGGA 59.344 43.478 0.00 0.00 0.00 4.81
2063 2073 4.292306 AGAGGTGTAATTCTGTTTGGGGAT 59.708 41.667 0.00 0.00 0.00 3.85
2064 2074 4.344104 AGGTGTAATTCTGTTTGGGGATG 58.656 43.478 0.00 0.00 0.00 3.51
2065 2075 4.044065 AGGTGTAATTCTGTTTGGGGATGA 59.956 41.667 0.00 0.00 0.00 2.92
2066 2076 4.157840 GGTGTAATTCTGTTTGGGGATGAC 59.842 45.833 0.00 0.00 0.00 3.06
2067 2077 4.764823 GTGTAATTCTGTTTGGGGATGACA 59.235 41.667 0.00 0.00 0.00 3.58
2068 2078 5.418840 GTGTAATTCTGTTTGGGGATGACAT 59.581 40.000 0.00 0.00 0.00 3.06
2069 2079 6.015918 TGTAATTCTGTTTGGGGATGACATT 58.984 36.000 0.00 0.00 0.00 2.71
2070 2080 7.122055 GTGTAATTCTGTTTGGGGATGACATTA 59.878 37.037 0.00 0.00 0.00 1.90
2071 2081 6.780457 AATTCTGTTTGGGGATGACATTAG 57.220 37.500 0.00 0.00 0.00 1.73
2072 2082 5.512942 TTCTGTTTGGGGATGACATTAGA 57.487 39.130 0.00 0.00 0.00 2.10
2073 2083 5.715439 TCTGTTTGGGGATGACATTAGAT 57.285 39.130 0.00 0.00 0.00 1.98
2074 2084 6.823286 TCTGTTTGGGGATGACATTAGATA 57.177 37.500 0.00 0.00 0.00 1.98
2075 2085 7.206789 TCTGTTTGGGGATGACATTAGATAA 57.793 36.000 0.00 0.00 0.00 1.75
2076 2086 7.815383 TCTGTTTGGGGATGACATTAGATAAT 58.185 34.615 0.00 0.00 0.00 1.28
2077 2087 7.939039 TCTGTTTGGGGATGACATTAGATAATC 59.061 37.037 0.00 0.00 0.00 1.75
2078 2088 7.004086 TGTTTGGGGATGACATTAGATAATCC 58.996 38.462 0.00 0.00 36.80 3.01
2079 2089 5.420725 TGGGGATGACATTAGATAATCCG 57.579 43.478 0.00 0.00 38.14 4.18
2080 2090 5.090845 TGGGGATGACATTAGATAATCCGA 58.909 41.667 0.00 0.00 38.14 4.55
2081 2091 5.546110 TGGGGATGACATTAGATAATCCGAA 59.454 40.000 0.00 0.00 38.14 4.30
2082 2092 6.215431 TGGGGATGACATTAGATAATCCGAAT 59.785 38.462 0.00 0.00 38.14 3.34
2083 2093 6.763610 GGGGATGACATTAGATAATCCGAATC 59.236 42.308 0.00 0.00 38.14 2.52
2084 2094 6.477033 GGGATGACATTAGATAATCCGAATCG 59.523 42.308 0.00 0.00 38.14 3.34
2085 2095 7.036220 GGATGACATTAGATAATCCGAATCGT 58.964 38.462 0.82 0.00 0.00 3.73
2086 2096 8.188799 GGATGACATTAGATAATCCGAATCGTA 58.811 37.037 0.82 0.00 0.00 3.43
2087 2097 9.227490 GATGACATTAGATAATCCGAATCGTAG 57.773 37.037 0.82 0.00 0.00 3.51
2088 2098 8.107399 TGACATTAGATAATCCGAATCGTAGT 57.893 34.615 0.82 0.00 0.00 2.73
2089 2099 8.235226 TGACATTAGATAATCCGAATCGTAGTC 58.765 37.037 0.82 0.00 0.00 2.59
2090 2100 7.536855 ACATTAGATAATCCGAATCGTAGTCC 58.463 38.462 0.82 0.00 0.00 3.85
2091 2101 7.393796 ACATTAGATAATCCGAATCGTAGTCCT 59.606 37.037 0.82 0.00 0.00 3.85
2092 2102 5.883503 AGATAATCCGAATCGTAGTCCTC 57.116 43.478 0.82 0.00 0.00 3.71
2093 2103 4.392445 AGATAATCCGAATCGTAGTCCTCG 59.608 45.833 0.82 0.00 0.00 4.63
2094 2104 0.592148 ATCCGAATCGTAGTCCTCGC 59.408 55.000 0.82 0.00 0.00 5.03
2095 2105 1.368969 CCGAATCGTAGTCCTCGCG 60.369 63.158 0.00 0.00 0.00 5.87
2096 2106 1.368969 CGAATCGTAGTCCTCGCGG 60.369 63.158 6.13 0.00 0.00 6.46
2097 2107 1.008767 GAATCGTAGTCCTCGCGGG 60.009 63.158 6.13 0.59 0.00 6.13
2098 2108 1.442526 GAATCGTAGTCCTCGCGGGA 61.443 60.000 8.08 10.34 42.77 5.14
2105 2115 3.833645 TCCTCGCGGGAATGGTCG 61.834 66.667 8.08 0.00 41.91 4.79
2112 2122 3.327464 CGGGAATGGTCGCAAAATG 57.673 52.632 0.00 0.00 36.52 2.32
2113 2123 0.801836 CGGGAATGGTCGCAAAATGC 60.802 55.000 0.00 0.00 40.69 3.56
2125 2135 3.776043 GCAAAATGCGAAGGAGTTTTG 57.224 42.857 5.36 5.36 44.95 2.44
2126 2136 3.123050 GCAAAATGCGAAGGAGTTTTGT 58.877 40.909 10.08 0.00 44.95 2.83
2127 2137 3.555547 GCAAAATGCGAAGGAGTTTTGTT 59.444 39.130 10.08 0.00 44.95 2.83
2128 2138 4.550639 GCAAAATGCGAAGGAGTTTTGTTG 60.551 41.667 10.08 0.00 44.95 3.33
2129 2139 4.385358 AAATGCGAAGGAGTTTTGTTGT 57.615 36.364 0.00 0.00 27.05 3.32
2130 2140 3.626028 ATGCGAAGGAGTTTTGTTGTC 57.374 42.857 0.00 0.00 0.00 3.18
2131 2141 1.329292 TGCGAAGGAGTTTTGTTGTCG 59.671 47.619 0.00 0.00 0.00 4.35
2132 2142 1.595794 GCGAAGGAGTTTTGTTGTCGA 59.404 47.619 0.00 0.00 0.00 4.20
2133 2143 2.031191 GCGAAGGAGTTTTGTTGTCGAA 59.969 45.455 0.00 0.00 0.00 3.71
2134 2144 3.844943 GCGAAGGAGTTTTGTTGTCGAAG 60.845 47.826 0.00 0.00 0.00 3.79
2135 2145 3.618698 GAAGGAGTTTTGTTGTCGAAGC 58.381 45.455 0.00 0.00 0.00 3.86
2136 2146 2.919228 AGGAGTTTTGTTGTCGAAGCT 58.081 42.857 0.00 0.00 32.48 3.74
2137 2147 2.614057 AGGAGTTTTGTTGTCGAAGCTG 59.386 45.455 0.00 0.00 30.47 4.24
2138 2148 2.287009 GGAGTTTTGTTGTCGAAGCTGG 60.287 50.000 0.00 0.00 30.47 4.85
2139 2149 1.676006 AGTTTTGTTGTCGAAGCTGGG 59.324 47.619 0.00 0.00 29.43 4.45
2140 2150 1.028905 TTTTGTTGTCGAAGCTGGGG 58.971 50.000 0.00 0.00 0.00 4.96
2141 2151 0.181587 TTTGTTGTCGAAGCTGGGGA 59.818 50.000 0.00 0.00 0.00 4.81
2142 2152 0.400213 TTGTTGTCGAAGCTGGGGAT 59.600 50.000 0.00 0.00 0.00 3.85
2143 2153 0.036388 TGTTGTCGAAGCTGGGGATC 60.036 55.000 0.00 0.00 0.00 3.36
2144 2154 0.250513 GTTGTCGAAGCTGGGGATCT 59.749 55.000 0.00 0.00 0.00 2.75
2145 2155 1.480954 GTTGTCGAAGCTGGGGATCTA 59.519 52.381 0.00 0.00 0.00 1.98
2146 2156 1.403814 TGTCGAAGCTGGGGATCTAG 58.596 55.000 0.00 0.00 0.00 2.43
2147 2157 1.063942 TGTCGAAGCTGGGGATCTAGA 60.064 52.381 0.00 0.00 0.00 2.43
2148 2158 2.243810 GTCGAAGCTGGGGATCTAGAT 58.756 52.381 4.47 4.47 0.00 1.98
2149 2159 3.181433 TGTCGAAGCTGGGGATCTAGATA 60.181 47.826 4.89 0.00 0.00 1.98
2150 2160 3.442273 GTCGAAGCTGGGGATCTAGATAG 59.558 52.174 4.89 0.27 0.00 2.08
2151 2161 2.757868 CGAAGCTGGGGATCTAGATAGG 59.242 54.545 4.89 0.00 0.00 2.57
2152 2162 3.785364 GAAGCTGGGGATCTAGATAGGT 58.215 50.000 4.89 2.06 0.00 3.08
2153 2163 4.567958 CGAAGCTGGGGATCTAGATAGGTA 60.568 50.000 4.89 0.00 0.00 3.08
2154 2164 4.325084 AGCTGGGGATCTAGATAGGTAC 57.675 50.000 4.89 0.00 0.00 3.34
2155 2165 3.011934 AGCTGGGGATCTAGATAGGTACC 59.988 52.174 4.89 2.73 36.63 3.34
2156 2166 3.622630 CTGGGGATCTAGATAGGTACCG 58.377 54.545 4.89 0.00 38.39 4.02
2157 2167 3.262842 TGGGGATCTAGATAGGTACCGA 58.737 50.000 4.89 0.38 38.39 4.69
2158 2168 3.856813 TGGGGATCTAGATAGGTACCGAT 59.143 47.826 7.30 7.30 38.39 4.18
2159 2169 4.079901 TGGGGATCTAGATAGGTACCGATC 60.080 50.000 23.40 23.40 38.39 3.69
2160 2170 4.166531 GGGGATCTAGATAGGTACCGATCT 59.833 50.000 32.09 32.09 38.39 2.75
2161 2171 5.370679 GGGATCTAGATAGGTACCGATCTC 58.629 50.000 33.06 20.89 38.83 2.75
2162 2172 5.051816 GGATCTAGATAGGTACCGATCTCG 58.948 50.000 33.06 27.67 38.83 4.04
2173 2183 3.780624 CGATCTCGGTGGGGATTTT 57.219 52.632 0.00 0.00 35.37 1.82
2174 2184 1.583054 CGATCTCGGTGGGGATTTTC 58.417 55.000 0.00 0.00 35.37 2.29
2175 2185 1.810412 CGATCTCGGTGGGGATTTTCC 60.810 57.143 0.00 0.00 33.66 3.13
2176 2186 1.490910 GATCTCGGTGGGGATTTTCCT 59.509 52.381 0.00 0.00 36.57 3.36
2177 2187 2.257391 TCTCGGTGGGGATTTTCCTA 57.743 50.000 0.00 0.00 36.57 2.94
2178 2188 2.771688 TCTCGGTGGGGATTTTCCTAT 58.228 47.619 0.00 0.00 36.57 2.57
2179 2189 3.120108 TCTCGGTGGGGATTTTCCTATT 58.880 45.455 0.00 0.00 36.57 1.73
2180 2190 3.526019 TCTCGGTGGGGATTTTCCTATTT 59.474 43.478 0.00 0.00 36.57 1.40
2181 2191 4.017867 TCTCGGTGGGGATTTTCCTATTTT 60.018 41.667 0.00 0.00 36.57 1.82
2182 2192 4.679331 TCGGTGGGGATTTTCCTATTTTT 58.321 39.130 0.00 0.00 36.57 1.94
2212 2222 6.834876 GGAATTTGTTTCATTCCTTTCATGC 58.165 36.000 4.69 0.00 44.52 4.06
2213 2223 6.427547 GGAATTTGTTTCATTCCTTTCATGCA 59.572 34.615 4.69 0.00 44.52 3.96
2214 2224 7.120138 GGAATTTGTTTCATTCCTTTCATGCAT 59.880 33.333 0.00 0.00 44.52 3.96
2215 2225 9.153721 GAATTTGTTTCATTCCTTTCATGCATA 57.846 29.630 0.00 0.00 34.27 3.14
2216 2226 8.712285 ATTTGTTTCATTCCTTTCATGCATAG 57.288 30.769 0.00 0.00 0.00 2.23
2217 2227 7.465353 TTGTTTCATTCCTTTCATGCATAGA 57.535 32.000 0.00 0.00 0.00 1.98
2218 2228 7.649533 TGTTTCATTCCTTTCATGCATAGAT 57.350 32.000 0.00 0.00 0.00 1.98
2219 2229 7.485810 TGTTTCATTCCTTTCATGCATAGATG 58.514 34.615 0.00 0.00 0.00 2.90
2220 2230 7.339976 TGTTTCATTCCTTTCATGCATAGATGA 59.660 33.333 0.00 0.00 0.00 2.92
2221 2231 8.358148 GTTTCATTCCTTTCATGCATAGATGAT 58.642 33.333 0.00 0.00 32.35 2.45
2222 2232 7.683437 TCATTCCTTTCATGCATAGATGATC 57.317 36.000 0.00 0.00 32.35 2.92
2223 2233 6.657966 TCATTCCTTTCATGCATAGATGATCC 59.342 38.462 0.00 0.00 32.35 3.36
2224 2234 5.837770 TCCTTTCATGCATAGATGATCCT 57.162 39.130 0.00 0.00 32.35 3.24
2225 2235 6.196918 TCCTTTCATGCATAGATGATCCTT 57.803 37.500 0.00 0.00 32.35 3.36
2226 2236 6.236409 TCCTTTCATGCATAGATGATCCTTC 58.764 40.000 0.00 0.00 32.35 3.46
2227 2237 6.044054 TCCTTTCATGCATAGATGATCCTTCT 59.956 38.462 0.00 0.00 32.35 2.85
2228 2238 6.149640 CCTTTCATGCATAGATGATCCTTCTG 59.850 42.308 0.00 0.00 32.35 3.02
2229 2239 6.429521 TTCATGCATAGATGATCCTTCTGA 57.570 37.500 0.00 0.00 32.35 3.27
2230 2240 6.038997 TCATGCATAGATGATCCTTCTGAG 57.961 41.667 0.00 0.70 0.00 3.35
2231 2241 4.268797 TGCATAGATGATCCTTCTGAGC 57.731 45.455 5.72 8.91 0.00 4.26
2232 2242 3.902467 TGCATAGATGATCCTTCTGAGCT 59.098 43.478 15.61 0.00 0.00 4.09
2233 2243 4.347292 TGCATAGATGATCCTTCTGAGCTT 59.653 41.667 15.61 0.00 0.00 3.74
2234 2244 5.163227 TGCATAGATGATCCTTCTGAGCTTT 60.163 40.000 15.61 0.00 0.00 3.51
2235 2245 5.179742 GCATAGATGATCCTTCTGAGCTTTG 59.820 44.000 5.72 0.00 0.00 2.77
2236 2246 4.153673 AGATGATCCTTCTGAGCTTTGG 57.846 45.455 0.00 0.00 0.00 3.28
2237 2247 3.779183 AGATGATCCTTCTGAGCTTTGGA 59.221 43.478 0.00 0.00 0.00 3.53
2238 2248 4.226846 AGATGATCCTTCTGAGCTTTGGAA 59.773 41.667 0.00 0.00 0.00 3.53
2239 2249 3.947868 TGATCCTTCTGAGCTTTGGAAG 58.052 45.455 13.69 13.69 36.99 3.46
2240 2250 3.328931 TGATCCTTCTGAGCTTTGGAAGT 59.671 43.478 17.05 5.74 35.90 3.01
2241 2251 4.532126 TGATCCTTCTGAGCTTTGGAAGTA 59.468 41.667 17.05 7.40 35.90 2.24
2242 2252 4.273148 TCCTTCTGAGCTTTGGAAGTAC 57.727 45.455 17.05 0.00 35.90 2.73
2243 2253 3.008049 TCCTTCTGAGCTTTGGAAGTACC 59.992 47.826 17.05 0.00 35.90 3.34
2244 2254 3.008485 CCTTCTGAGCTTTGGAAGTACCT 59.992 47.826 17.05 0.00 39.86 3.08
2245 2255 4.505742 CCTTCTGAGCTTTGGAAGTACCTT 60.506 45.833 17.05 0.00 39.86 3.50
2246 2256 4.706842 TCTGAGCTTTGGAAGTACCTTT 57.293 40.909 0.00 0.00 39.86 3.11
2247 2257 4.389374 TCTGAGCTTTGGAAGTACCTTTG 58.611 43.478 0.00 0.00 39.86 2.77
2248 2258 2.884639 TGAGCTTTGGAAGTACCTTTGC 59.115 45.455 0.00 0.00 39.86 3.68
2249 2259 2.229062 GAGCTTTGGAAGTACCTTTGCC 59.771 50.000 0.00 0.00 39.86 4.52
2250 2260 1.272490 GCTTTGGAAGTACCTTTGCCC 59.728 52.381 0.00 0.00 39.86 5.36
2251 2261 2.876581 CTTTGGAAGTACCTTTGCCCT 58.123 47.619 0.00 0.00 39.86 5.19
2252 2262 2.286365 TTGGAAGTACCTTTGCCCTG 57.714 50.000 0.00 0.00 39.86 4.45
2253 2263 0.404040 TGGAAGTACCTTTGCCCTGG 59.596 55.000 0.00 0.00 39.86 4.45
2254 2264 0.696501 GGAAGTACCTTTGCCCTGGA 59.303 55.000 0.00 0.00 35.41 3.86
2255 2265 1.074889 GGAAGTACCTTTGCCCTGGAA 59.925 52.381 0.00 0.00 35.41 3.53
2256 2266 2.437413 GAAGTACCTTTGCCCTGGAAG 58.563 52.381 0.00 0.00 0.00 3.46
2257 2267 1.742308 AGTACCTTTGCCCTGGAAGA 58.258 50.000 0.00 0.00 34.07 2.87
2258 2268 2.279173 AGTACCTTTGCCCTGGAAGAT 58.721 47.619 0.00 0.00 34.07 2.40
2259 2269 2.649816 AGTACCTTTGCCCTGGAAGATT 59.350 45.455 0.00 0.00 34.07 2.40
2260 2270 1.928868 ACCTTTGCCCTGGAAGATTG 58.071 50.000 0.00 0.00 34.07 2.67
2261 2271 1.147817 ACCTTTGCCCTGGAAGATTGT 59.852 47.619 0.00 0.00 34.07 2.71
2262 2272 1.821136 CCTTTGCCCTGGAAGATTGTC 59.179 52.381 0.00 0.00 34.07 3.18
2263 2273 1.821136 CTTTGCCCTGGAAGATTGTCC 59.179 52.381 0.00 0.00 38.27 4.02
2264 2274 0.039618 TTGCCCTGGAAGATTGTCCC 59.960 55.000 0.00 0.00 36.80 4.46
2265 2275 1.452108 GCCCTGGAAGATTGTCCCG 60.452 63.158 0.00 0.00 36.80 5.14
2266 2276 1.991230 CCCTGGAAGATTGTCCCGT 59.009 57.895 0.00 0.00 36.80 5.28
2267 2277 0.392998 CCCTGGAAGATTGTCCCGTG 60.393 60.000 0.00 0.00 36.80 4.94
2268 2278 0.613260 CCTGGAAGATTGTCCCGTGA 59.387 55.000 0.00 0.00 36.80 4.35
2269 2279 1.210478 CCTGGAAGATTGTCCCGTGAT 59.790 52.381 0.00 0.00 36.80 3.06
2270 2280 2.356125 CCTGGAAGATTGTCCCGTGATT 60.356 50.000 0.00 0.00 36.80 2.57
2271 2281 2.679837 CTGGAAGATTGTCCCGTGATTG 59.320 50.000 0.00 0.00 36.80 2.67
2272 2282 2.304470 TGGAAGATTGTCCCGTGATTGA 59.696 45.455 0.00 0.00 36.80 2.57
2273 2283 2.939103 GGAAGATTGTCCCGTGATTGAG 59.061 50.000 0.00 0.00 0.00 3.02
2274 2284 2.698855 AGATTGTCCCGTGATTGAGG 57.301 50.000 0.00 0.00 0.00 3.86
2283 2293 3.550437 CCGTGATTGAGGGATTTCTCT 57.450 47.619 0.00 0.00 34.98 3.10
2284 2294 4.672587 CCGTGATTGAGGGATTTCTCTA 57.327 45.455 0.00 0.00 34.98 2.43
2285 2295 4.372656 CCGTGATTGAGGGATTTCTCTAC 58.627 47.826 0.00 0.00 34.98 2.59
2286 2296 4.141937 CCGTGATTGAGGGATTTCTCTACA 60.142 45.833 0.00 0.00 34.98 2.74
2287 2297 5.419542 CGTGATTGAGGGATTTCTCTACAA 58.580 41.667 0.00 0.00 34.98 2.41
2288 2298 5.292101 CGTGATTGAGGGATTTCTCTACAAC 59.708 44.000 0.00 0.00 34.98 3.32
2289 2299 6.410540 GTGATTGAGGGATTTCTCTACAACT 58.589 40.000 0.00 0.00 34.98 3.16
2290 2300 7.556844 GTGATTGAGGGATTTCTCTACAACTA 58.443 38.462 0.00 0.00 34.98 2.24
2291 2301 8.207545 GTGATTGAGGGATTTCTCTACAACTAT 58.792 37.037 0.00 0.00 34.98 2.12
2292 2302 8.772250 TGATTGAGGGATTTCTCTACAACTATT 58.228 33.333 0.00 0.00 34.98 1.73
2293 2303 8.970859 ATTGAGGGATTTCTCTACAACTATTG 57.029 34.615 0.00 0.00 34.98 1.90
2294 2304 6.349300 TGAGGGATTTCTCTACAACTATTGC 58.651 40.000 0.00 0.00 34.98 3.56
2295 2305 5.360591 AGGGATTTCTCTACAACTATTGCG 58.639 41.667 0.00 0.00 0.00 4.85
2296 2306 5.128827 AGGGATTTCTCTACAACTATTGCGA 59.871 40.000 0.00 0.00 0.00 5.10
2297 2307 5.992217 GGGATTTCTCTACAACTATTGCGAT 59.008 40.000 0.00 0.00 0.00 4.58
2298 2308 6.483640 GGGATTTCTCTACAACTATTGCGATT 59.516 38.462 0.00 0.00 0.00 3.34
2299 2309 7.656137 GGGATTTCTCTACAACTATTGCGATTA 59.344 37.037 0.00 0.00 0.00 1.75
2300 2310 9.042008 GGATTTCTCTACAACTATTGCGATTAA 57.958 33.333 0.00 0.00 0.00 1.40
2303 2313 9.647797 TTTCTCTACAACTATTGCGATTAAAGA 57.352 29.630 0.00 0.00 0.00 2.52
2304 2314 8.630278 TCTCTACAACTATTGCGATTAAAGAC 57.370 34.615 0.00 0.00 0.00 3.01
2305 2315 8.248253 TCTCTACAACTATTGCGATTAAAGACA 58.752 33.333 0.00 0.00 0.00 3.41
2306 2316 8.942338 TCTACAACTATTGCGATTAAAGACAT 57.058 30.769 0.00 0.00 0.00 3.06
2317 2327 7.792925 TGCGATTAAAGACATATACAAATCCG 58.207 34.615 0.00 0.00 0.00 4.18
2318 2328 7.654116 TGCGATTAAAGACATATACAAATCCGA 59.346 33.333 0.00 0.00 0.00 4.55
2319 2329 8.492748 GCGATTAAAGACATATACAAATCCGAA 58.507 33.333 0.00 0.00 0.00 4.30
2324 2334 7.553881 AAGACATATACAAATCCGAAACAGG 57.446 36.000 0.00 0.00 0.00 4.00
2325 2335 6.055588 AGACATATACAAATCCGAAACAGGG 58.944 40.000 0.00 0.00 0.00 4.45
2326 2336 5.996644 ACATATACAAATCCGAAACAGGGA 58.003 37.500 0.00 0.00 38.10 4.20
2327 2337 6.419791 ACATATACAAATCCGAAACAGGGAA 58.580 36.000 0.00 0.00 37.07 3.97
2328 2338 6.542370 ACATATACAAATCCGAAACAGGGAAG 59.458 38.462 0.00 0.00 37.07 3.46
2329 2339 3.223674 ACAAATCCGAAACAGGGAAGT 57.776 42.857 0.00 0.00 37.07 3.01
2330 2340 4.360951 ACAAATCCGAAACAGGGAAGTA 57.639 40.909 0.00 0.00 37.07 2.24
2331 2341 4.070009 ACAAATCCGAAACAGGGAAGTAC 58.930 43.478 0.00 0.00 37.07 2.73
2332 2342 2.667473 ATCCGAAACAGGGAAGTACG 57.333 50.000 0.00 0.00 37.07 3.67
2333 2343 1.619654 TCCGAAACAGGGAAGTACGA 58.380 50.000 0.00 0.00 0.00 3.43
2334 2344 1.962807 TCCGAAACAGGGAAGTACGAA 59.037 47.619 0.00 0.00 0.00 3.85
2335 2345 2.364970 TCCGAAACAGGGAAGTACGAAA 59.635 45.455 0.00 0.00 0.00 3.46
2336 2346 2.477754 CCGAAACAGGGAAGTACGAAAC 59.522 50.000 0.00 0.00 0.00 2.78
2337 2347 3.387397 CGAAACAGGGAAGTACGAAACT 58.613 45.455 0.00 0.00 41.49 2.66
2338 2348 4.549458 CGAAACAGGGAAGTACGAAACTA 58.451 43.478 0.00 0.00 37.50 2.24
2339 2349 4.984161 CGAAACAGGGAAGTACGAAACTAA 59.016 41.667 0.00 0.00 37.50 2.24
2340 2350 5.463061 CGAAACAGGGAAGTACGAAACTAAA 59.537 40.000 0.00 0.00 37.50 1.85
2341 2351 6.346359 CGAAACAGGGAAGTACGAAACTAAAG 60.346 42.308 0.00 0.00 37.50 1.85
2342 2352 4.891260 ACAGGGAAGTACGAAACTAAAGG 58.109 43.478 0.00 0.00 37.50 3.11
2343 2353 4.251268 CAGGGAAGTACGAAACTAAAGGG 58.749 47.826 0.00 0.00 37.50 3.95
2344 2354 4.020839 CAGGGAAGTACGAAACTAAAGGGA 60.021 45.833 0.00 0.00 37.50 4.20
2345 2355 4.020751 AGGGAAGTACGAAACTAAAGGGAC 60.021 45.833 0.00 0.00 37.50 4.46
2346 2356 4.020751 GGGAAGTACGAAACTAAAGGGACT 60.021 45.833 0.00 0.00 37.80 3.85
2347 2357 5.512060 GGGAAGTACGAAACTAAAGGGACTT 60.512 44.000 0.00 0.00 45.78 3.01
2360 2370 3.878160 AGGGACTTTCTCTCGATGAAC 57.122 47.619 1.20 0.00 27.25 3.18
2361 2371 3.436243 AGGGACTTTCTCTCGATGAACT 58.564 45.455 1.20 0.00 27.25 3.01
2362 2372 3.445805 AGGGACTTTCTCTCGATGAACTC 59.554 47.826 1.20 0.67 27.25 3.01
2363 2373 3.429684 GGGACTTTCTCTCGATGAACTCC 60.430 52.174 11.77 11.77 0.00 3.85
2364 2374 3.429684 GGACTTTCTCTCGATGAACTCCC 60.430 52.174 1.20 0.60 0.00 4.30
2365 2375 3.436243 ACTTTCTCTCGATGAACTCCCT 58.564 45.455 1.20 0.00 0.00 4.20
2366 2376 4.601084 ACTTTCTCTCGATGAACTCCCTA 58.399 43.478 1.20 0.00 0.00 3.53
2367 2377 4.642885 ACTTTCTCTCGATGAACTCCCTAG 59.357 45.833 1.20 0.00 0.00 3.02
2368 2378 3.935818 TCTCTCGATGAACTCCCTAGT 57.064 47.619 0.00 0.00 37.65 2.57
2380 2390 4.489306 ACTCCCTAGTTCCTATGTTTGC 57.511 45.455 0.00 0.00 29.00 3.68
2381 2391 4.104831 ACTCCCTAGTTCCTATGTTTGCT 58.895 43.478 0.00 0.00 29.00 3.91
2382 2392 4.536489 ACTCCCTAGTTCCTATGTTTGCTT 59.464 41.667 0.00 0.00 29.00 3.91
2383 2393 5.014228 ACTCCCTAGTTCCTATGTTTGCTTT 59.986 40.000 0.00 0.00 29.00 3.51
2384 2394 5.253330 TCCCTAGTTCCTATGTTTGCTTTG 58.747 41.667 0.00 0.00 0.00 2.77
2385 2395 5.013704 TCCCTAGTTCCTATGTTTGCTTTGA 59.986 40.000 0.00 0.00 0.00 2.69
2386 2396 5.355350 CCCTAGTTCCTATGTTTGCTTTGAG 59.645 44.000 0.00 0.00 0.00 3.02
2387 2397 5.355350 CCTAGTTCCTATGTTTGCTTTGAGG 59.645 44.000 0.00 0.00 0.00 3.86
2388 2398 3.507622 AGTTCCTATGTTTGCTTTGAGGC 59.492 43.478 0.00 0.00 0.00 4.70
2389 2399 3.153369 TCCTATGTTTGCTTTGAGGCA 57.847 42.857 0.00 0.00 40.74 4.75
2390 2400 3.084039 TCCTATGTTTGCTTTGAGGCAG 58.916 45.455 0.00 0.00 43.39 4.85
2391 2401 2.821969 CCTATGTTTGCTTTGAGGCAGT 59.178 45.455 0.00 0.00 43.39 4.40
2392 2402 2.806608 ATGTTTGCTTTGAGGCAGTG 57.193 45.000 0.00 0.00 43.39 3.66
2393 2403 0.102844 TGTTTGCTTTGAGGCAGTGC 59.897 50.000 6.55 6.55 43.39 4.40
2394 2404 0.386838 GTTTGCTTTGAGGCAGTGCT 59.613 50.000 16.11 0.33 43.39 4.40
2395 2405 1.608590 GTTTGCTTTGAGGCAGTGCTA 59.391 47.619 16.11 0.00 43.39 3.49
2396 2406 1.979855 TTGCTTTGAGGCAGTGCTAA 58.020 45.000 16.11 5.52 43.39 3.09
2397 2407 2.205022 TGCTTTGAGGCAGTGCTAAT 57.795 45.000 16.11 0.97 37.29 1.73
2398 2408 2.517959 TGCTTTGAGGCAGTGCTAATT 58.482 42.857 16.11 0.00 37.29 1.40
2399 2409 2.229543 TGCTTTGAGGCAGTGCTAATTG 59.770 45.455 16.11 2.88 37.29 2.32
2400 2410 2.872370 CTTTGAGGCAGTGCTAATTGC 58.128 47.619 16.11 0.00 38.26 3.56
2401 2411 2.205022 TTGAGGCAGTGCTAATTGCT 57.795 45.000 16.11 1.54 43.37 3.91
2402 2412 3.348647 TTGAGGCAGTGCTAATTGCTA 57.651 42.857 16.11 0.00 43.37 3.49
2403 2413 3.348647 TGAGGCAGTGCTAATTGCTAA 57.651 42.857 16.11 0.00 43.37 3.09
2404 2414 3.889815 TGAGGCAGTGCTAATTGCTAAT 58.110 40.909 16.11 0.00 43.37 1.73
2405 2415 3.628942 TGAGGCAGTGCTAATTGCTAATG 59.371 43.478 16.11 0.00 43.37 1.90
2406 2416 3.624777 AGGCAGTGCTAATTGCTAATGT 58.375 40.909 16.11 0.00 43.37 2.71
2407 2417 3.379372 AGGCAGTGCTAATTGCTAATGTG 59.621 43.478 16.11 0.00 43.37 3.21
2408 2418 3.129287 GGCAGTGCTAATTGCTAATGTGT 59.871 43.478 16.11 0.00 43.37 3.72
2409 2419 4.100529 GCAGTGCTAATTGCTAATGTGTG 58.899 43.478 8.18 0.00 43.37 3.82
2410 2420 4.142622 GCAGTGCTAATTGCTAATGTGTGA 60.143 41.667 8.18 0.00 43.37 3.58
2411 2421 5.619757 GCAGTGCTAATTGCTAATGTGTGAA 60.620 40.000 8.18 0.00 43.37 3.18
2412 2422 5.796935 CAGTGCTAATTGCTAATGTGTGAAC 59.203 40.000 0.00 0.00 43.37 3.18
2413 2423 5.707298 AGTGCTAATTGCTAATGTGTGAACT 59.293 36.000 0.00 0.00 43.37 3.01
2414 2424 6.878923 AGTGCTAATTGCTAATGTGTGAACTA 59.121 34.615 0.00 0.00 43.37 2.24
2415 2425 7.554118 AGTGCTAATTGCTAATGTGTGAACTAT 59.446 33.333 0.00 0.00 43.37 2.12
2416 2426 7.852945 GTGCTAATTGCTAATGTGTGAACTATC 59.147 37.037 0.00 0.00 43.37 2.08
2417 2427 7.552330 TGCTAATTGCTAATGTGTGAACTATCA 59.448 33.333 0.00 0.00 43.37 2.15
2418 2428 7.852945 GCTAATTGCTAATGTGTGAACTATCAC 59.147 37.037 2.09 2.09 46.08 3.06
2455 2465 8.868522 AGATTGGAATCACTTCTAACATCAAA 57.131 30.769 2.32 0.00 35.06 2.69
2456 2466 8.954350 AGATTGGAATCACTTCTAACATCAAAG 58.046 33.333 2.32 0.00 35.06 2.77
2457 2467 8.868522 ATTGGAATCACTTCTAACATCAAAGA 57.131 30.769 0.00 0.00 35.06 2.52
2458 2468 8.868522 TTGGAATCACTTCTAACATCAAAGAT 57.131 30.769 0.00 0.00 28.05 2.40
2459 2469 9.958180 TTGGAATCACTTCTAACATCAAAGATA 57.042 29.630 0.00 0.00 28.05 1.98
2460 2470 9.605275 TGGAATCACTTCTAACATCAAAGATAG 57.395 33.333 0.00 0.00 0.00 2.08
2461 2471 9.050601 GGAATCACTTCTAACATCAAAGATAGG 57.949 37.037 0.00 0.00 0.00 2.57
2462 2472 9.823647 GAATCACTTCTAACATCAAAGATAGGA 57.176 33.333 0.00 0.00 0.00 2.94
2470 2480 9.618890 TCTAACATCAAAGATAGGAAAATCTGG 57.381 33.333 0.00 0.00 36.34 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.365497 AGTTTTGGATTGGTCTTTCTCATTT 57.635 32.000 0.00 0.00 0.00 2.32
59 61 3.056465 GGAAAGGAGACTGATCTTGACGT 60.056 47.826 0.00 0.00 42.68 4.34
71 73 4.452795 CCGAAAAGAGAAAGGAAAGGAGAC 59.547 45.833 0.00 0.00 0.00 3.36
137 139 8.437742 CAAAAGAATGACACTTGGAAATAATGC 58.562 33.333 0.00 0.00 0.00 3.56
356 358 0.255890 GCCATTTCCTGCTGGAGGTA 59.744 55.000 15.24 2.34 44.24 3.08
587 589 1.826385 GCTAGATTGGTGGCTGTTGT 58.174 50.000 0.00 0.00 0.00 3.32
866 869 0.029989 ACCTAATCCCCCTCCCAGTC 60.030 60.000 0.00 0.00 0.00 3.51
940 943 8.508875 GGATTTTGTGAAATTTAGGAGTCGTTA 58.491 33.333 0.00 0.00 35.65 3.18
1040 1045 4.479786 AAGAGGAGAAGACATAACCAGC 57.520 45.455 0.00 0.00 0.00 4.85
1674 1683 6.798427 AGAGAAACTATGTGATAGAAGCCA 57.202 37.500 0.00 0.00 36.68 4.75
1940 1950 2.191128 ACATGGACAGACAGGAAAGC 57.809 50.000 0.00 0.00 0.00 3.51
2012 2022 7.759607 AGAGAAACTATGCCCAATATACCATT 58.240 34.615 0.00 0.00 0.00 3.16
2016 2026 9.998106 TCTTAAGAGAAACTATGCCCAATATAC 57.002 33.333 0.00 0.00 0.00 1.47
2018 2028 8.160106 CCTCTTAAGAGAAACTATGCCCAATAT 58.840 37.037 30.17 0.00 44.74 1.28
2019 2029 7.127339 ACCTCTTAAGAGAAACTATGCCCAATA 59.873 37.037 30.17 0.00 44.74 1.90
2020 2030 6.069381 ACCTCTTAAGAGAAACTATGCCCAAT 60.069 38.462 30.17 0.00 44.74 3.16
2021 2031 5.250774 ACCTCTTAAGAGAAACTATGCCCAA 59.749 40.000 30.17 0.00 44.74 4.12
2022 2032 4.783227 ACCTCTTAAGAGAAACTATGCCCA 59.217 41.667 30.17 0.00 44.74 5.36
2023 2033 5.119694 CACCTCTTAAGAGAAACTATGCCC 58.880 45.833 30.17 0.00 44.74 5.36
2024 2034 5.735766 ACACCTCTTAAGAGAAACTATGCC 58.264 41.667 30.17 0.00 44.74 4.40
2025 2035 8.950208 ATTACACCTCTTAAGAGAAACTATGC 57.050 34.615 30.17 0.00 44.74 3.14
2029 2039 8.652290 ACAGAATTACACCTCTTAAGAGAAACT 58.348 33.333 30.17 16.86 44.74 2.66
2030 2040 8.834749 ACAGAATTACACCTCTTAAGAGAAAC 57.165 34.615 30.17 15.33 44.74 2.78
2031 2041 9.847224 AAACAGAATTACACCTCTTAAGAGAAA 57.153 29.630 30.17 18.77 44.74 2.52
2032 2042 9.273016 CAAACAGAATTACACCTCTTAAGAGAA 57.727 33.333 30.17 18.01 44.74 2.87
2033 2043 7.878127 CCAAACAGAATTACACCTCTTAAGAGA 59.122 37.037 30.17 12.93 44.74 3.10
2034 2044 7.119846 CCCAAACAGAATTACACCTCTTAAGAG 59.880 40.741 23.31 23.31 41.71 2.85
2035 2045 6.940298 CCCAAACAGAATTACACCTCTTAAGA 59.060 38.462 4.81 4.81 0.00 2.10
2036 2046 6.151144 CCCCAAACAGAATTACACCTCTTAAG 59.849 42.308 0.00 0.00 0.00 1.85
2037 2047 6.007703 CCCCAAACAGAATTACACCTCTTAA 58.992 40.000 0.00 0.00 0.00 1.85
2038 2048 5.311121 TCCCCAAACAGAATTACACCTCTTA 59.689 40.000 0.00 0.00 0.00 2.10
2039 2049 4.105697 TCCCCAAACAGAATTACACCTCTT 59.894 41.667 0.00 0.00 0.00 2.85
2040 2050 3.655777 TCCCCAAACAGAATTACACCTCT 59.344 43.478 0.00 0.00 0.00 3.69
2041 2051 4.028993 TCCCCAAACAGAATTACACCTC 57.971 45.455 0.00 0.00 0.00 3.85
2042 2052 4.044065 TCATCCCCAAACAGAATTACACCT 59.956 41.667 0.00 0.00 0.00 4.00
2043 2053 4.157840 GTCATCCCCAAACAGAATTACACC 59.842 45.833 0.00 0.00 0.00 4.16
2044 2054 4.764823 TGTCATCCCCAAACAGAATTACAC 59.235 41.667 0.00 0.00 0.00 2.90
2045 2055 4.991776 TGTCATCCCCAAACAGAATTACA 58.008 39.130 0.00 0.00 0.00 2.41
2046 2056 6.530019 AATGTCATCCCCAAACAGAATTAC 57.470 37.500 0.00 0.00 0.00 1.89
2047 2057 7.638444 TCTAATGTCATCCCCAAACAGAATTA 58.362 34.615 0.00 0.00 0.00 1.40
2048 2058 6.493166 TCTAATGTCATCCCCAAACAGAATT 58.507 36.000 0.00 0.00 0.00 2.17
2049 2059 6.078456 TCTAATGTCATCCCCAAACAGAAT 57.922 37.500 0.00 0.00 0.00 2.40
2050 2060 5.512942 TCTAATGTCATCCCCAAACAGAA 57.487 39.130 0.00 0.00 0.00 3.02
2051 2061 5.715439 ATCTAATGTCATCCCCAAACAGA 57.285 39.130 0.00 0.00 0.00 3.41
2052 2062 7.175641 GGATTATCTAATGTCATCCCCAAACAG 59.824 40.741 0.00 0.00 0.00 3.16
2053 2063 7.004086 GGATTATCTAATGTCATCCCCAAACA 58.996 38.462 0.00 0.00 0.00 2.83
2054 2064 6.149474 CGGATTATCTAATGTCATCCCCAAAC 59.851 42.308 0.00 0.00 31.19 2.93
2055 2065 6.043822 TCGGATTATCTAATGTCATCCCCAAA 59.956 38.462 0.00 0.00 31.19 3.28
2056 2066 5.546110 TCGGATTATCTAATGTCATCCCCAA 59.454 40.000 0.00 0.00 31.19 4.12
2057 2067 5.090845 TCGGATTATCTAATGTCATCCCCA 58.909 41.667 0.00 0.00 31.19 4.96
2058 2068 5.677319 TCGGATTATCTAATGTCATCCCC 57.323 43.478 0.00 0.00 31.19 4.81
2059 2069 6.477033 CGATTCGGATTATCTAATGTCATCCC 59.523 42.308 0.00 0.00 31.19 3.85
2060 2070 7.036220 ACGATTCGGATTATCTAATGTCATCC 58.964 38.462 11.29 0.00 0.00 3.51
2061 2071 9.227490 CTACGATTCGGATTATCTAATGTCATC 57.773 37.037 11.29 0.00 0.00 2.92
2062 2072 8.740906 ACTACGATTCGGATTATCTAATGTCAT 58.259 33.333 11.29 0.00 0.00 3.06
2063 2073 8.107399 ACTACGATTCGGATTATCTAATGTCA 57.893 34.615 11.29 0.00 0.00 3.58
2064 2074 7.697291 GGACTACGATTCGGATTATCTAATGTC 59.303 40.741 11.29 2.33 0.00 3.06
2065 2075 7.393796 AGGACTACGATTCGGATTATCTAATGT 59.606 37.037 11.29 0.00 0.00 2.71
2066 2076 7.763356 AGGACTACGATTCGGATTATCTAATG 58.237 38.462 11.29 0.00 0.00 1.90
2067 2077 7.201626 CGAGGACTACGATTCGGATTATCTAAT 60.202 40.741 11.29 0.00 0.00 1.73
2068 2078 6.091849 CGAGGACTACGATTCGGATTATCTAA 59.908 42.308 11.29 0.00 0.00 2.10
2069 2079 5.579904 CGAGGACTACGATTCGGATTATCTA 59.420 44.000 11.29 0.00 0.00 1.98
2070 2080 4.392445 CGAGGACTACGATTCGGATTATCT 59.608 45.833 11.29 0.88 0.00 1.98
2071 2081 4.649977 CGAGGACTACGATTCGGATTATC 58.350 47.826 11.29 0.25 0.00 1.75
2072 2082 3.119919 GCGAGGACTACGATTCGGATTAT 60.120 47.826 11.29 0.00 33.89 1.28
2073 2083 2.225019 GCGAGGACTACGATTCGGATTA 59.775 50.000 11.29 0.00 33.89 1.75
2074 2084 1.001597 GCGAGGACTACGATTCGGATT 60.002 52.381 11.29 0.00 33.89 3.01
2075 2085 0.592148 GCGAGGACTACGATTCGGAT 59.408 55.000 11.29 0.00 33.89 4.18
2076 2086 1.769098 CGCGAGGACTACGATTCGGA 61.769 60.000 11.29 0.00 33.89 4.55
2077 2087 1.368969 CGCGAGGACTACGATTCGG 60.369 63.158 11.29 0.00 33.89 4.30
2078 2088 4.191111 CGCGAGGACTACGATTCG 57.809 61.111 0.00 4.14 36.23 3.34
2094 2104 0.801836 GCATTTTGCGACCATTCCCG 60.802 55.000 0.00 0.00 31.71 5.14
2095 2105 3.049227 GCATTTTGCGACCATTCCC 57.951 52.632 0.00 0.00 31.71 3.97
2105 2115 3.123050 ACAAAACTCCTTCGCATTTTGC 58.877 40.909 7.92 0.00 42.93 3.68
2106 2116 4.566360 ACAACAAAACTCCTTCGCATTTTG 59.434 37.500 6.72 6.72 44.11 2.44
2107 2117 4.754322 ACAACAAAACTCCTTCGCATTTT 58.246 34.783 0.00 0.00 0.00 1.82
2108 2118 4.359706 GACAACAAAACTCCTTCGCATTT 58.640 39.130 0.00 0.00 0.00 2.32
2109 2119 3.548014 CGACAACAAAACTCCTTCGCATT 60.548 43.478 0.00 0.00 0.00 3.56
2110 2120 2.032030 CGACAACAAAACTCCTTCGCAT 60.032 45.455 0.00 0.00 0.00 4.73
2111 2121 1.329292 CGACAACAAAACTCCTTCGCA 59.671 47.619 0.00 0.00 0.00 5.10
2112 2122 1.595794 TCGACAACAAAACTCCTTCGC 59.404 47.619 0.00 0.00 0.00 4.70
2113 2123 3.844943 GCTTCGACAACAAAACTCCTTCG 60.845 47.826 0.00 0.00 0.00 3.79
2114 2124 3.312697 AGCTTCGACAACAAAACTCCTTC 59.687 43.478 0.00 0.00 0.00 3.46
2115 2125 3.065371 CAGCTTCGACAACAAAACTCCTT 59.935 43.478 0.00 0.00 0.00 3.36
2116 2126 2.614057 CAGCTTCGACAACAAAACTCCT 59.386 45.455 0.00 0.00 0.00 3.69
2117 2127 2.287009 CCAGCTTCGACAACAAAACTCC 60.287 50.000 0.00 0.00 0.00 3.85
2118 2128 2.287009 CCCAGCTTCGACAACAAAACTC 60.287 50.000 0.00 0.00 0.00 3.01
2119 2129 1.676006 CCCAGCTTCGACAACAAAACT 59.324 47.619 0.00 0.00 0.00 2.66
2120 2130 1.269051 CCCCAGCTTCGACAACAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
2121 2131 1.028905 CCCCAGCTTCGACAACAAAA 58.971 50.000 0.00 0.00 0.00 2.44
2122 2132 0.181587 TCCCCAGCTTCGACAACAAA 59.818 50.000 0.00 0.00 0.00 2.83
2123 2133 0.400213 ATCCCCAGCTTCGACAACAA 59.600 50.000 0.00 0.00 0.00 2.83
2124 2134 0.036388 GATCCCCAGCTTCGACAACA 60.036 55.000 0.00 0.00 0.00 3.33
2125 2135 0.250513 AGATCCCCAGCTTCGACAAC 59.749 55.000 0.00 0.00 0.00 3.32
2126 2136 1.757118 CTAGATCCCCAGCTTCGACAA 59.243 52.381 0.00 0.00 0.00 3.18
2127 2137 1.063942 TCTAGATCCCCAGCTTCGACA 60.064 52.381 0.00 0.00 0.00 4.35
2128 2138 1.693627 TCTAGATCCCCAGCTTCGAC 58.306 55.000 0.00 0.00 0.00 4.20
2129 2139 2.685106 ATCTAGATCCCCAGCTTCGA 57.315 50.000 0.00 0.00 0.00 3.71
2130 2140 2.757868 CCTATCTAGATCCCCAGCTTCG 59.242 54.545 8.95 0.00 0.00 3.79
2131 2141 3.785364 ACCTATCTAGATCCCCAGCTTC 58.215 50.000 8.95 0.00 0.00 3.86
2132 2142 3.933239 ACCTATCTAGATCCCCAGCTT 57.067 47.619 8.95 0.00 0.00 3.74
2133 2143 3.011934 GGTACCTATCTAGATCCCCAGCT 59.988 52.174 8.95 0.00 0.00 4.24
2134 2144 3.367321 GGTACCTATCTAGATCCCCAGC 58.633 54.545 8.95 0.00 0.00 4.85
2135 2145 3.266254 TCGGTACCTATCTAGATCCCCAG 59.734 52.174 8.95 0.59 0.00 4.45
2136 2146 3.262842 TCGGTACCTATCTAGATCCCCA 58.737 50.000 8.95 0.00 0.00 4.96
2137 2147 4.166531 AGATCGGTACCTATCTAGATCCCC 59.833 50.000 23.79 2.62 36.19 4.81
2138 2148 5.370679 GAGATCGGTACCTATCTAGATCCC 58.629 50.000 24.76 10.78 36.19 3.85
2139 2149 5.051816 CGAGATCGGTACCTATCTAGATCC 58.948 50.000 24.76 13.38 36.19 3.36
2155 2165 1.583054 GAAAATCCCCACCGAGATCG 58.417 55.000 0.00 0.00 39.44 3.69
2156 2166 1.490910 AGGAAAATCCCCACCGAGATC 59.509 52.381 0.00 0.00 37.19 2.75
2157 2167 1.596496 AGGAAAATCCCCACCGAGAT 58.404 50.000 0.00 0.00 37.19 2.75
2158 2168 2.257391 TAGGAAAATCCCCACCGAGA 57.743 50.000 0.00 0.00 37.19 4.04
2159 2169 3.577805 AATAGGAAAATCCCCACCGAG 57.422 47.619 0.00 0.00 37.19 4.63
2160 2170 4.325084 AAAATAGGAAAATCCCCACCGA 57.675 40.909 0.00 0.00 37.19 4.69
2189 2199 7.424227 TGCATGAAAGGAATGAAACAAATTC 57.576 32.000 0.00 0.00 38.60 2.17
2190 2200 7.989416 ATGCATGAAAGGAATGAAACAAATT 57.011 28.000 0.00 0.00 0.00 1.82
2191 2201 8.533657 TCTATGCATGAAAGGAATGAAACAAAT 58.466 29.630 10.16 0.00 0.00 2.32
2192 2202 7.894708 TCTATGCATGAAAGGAATGAAACAAA 58.105 30.769 10.16 0.00 0.00 2.83
2193 2203 7.465353 TCTATGCATGAAAGGAATGAAACAA 57.535 32.000 10.16 0.00 0.00 2.83
2194 2204 7.339976 TCATCTATGCATGAAAGGAATGAAACA 59.660 33.333 10.16 0.00 29.41 2.83
2195 2205 7.709947 TCATCTATGCATGAAAGGAATGAAAC 58.290 34.615 10.16 0.00 29.41 2.78
2196 2206 7.885009 TCATCTATGCATGAAAGGAATGAAA 57.115 32.000 10.16 0.00 29.41 2.69
2197 2207 7.176165 GGATCATCTATGCATGAAAGGAATGAA 59.824 37.037 10.16 0.00 36.36 2.57
2198 2208 6.657966 GGATCATCTATGCATGAAAGGAATGA 59.342 38.462 10.16 5.73 36.36 2.57
2199 2209 6.659668 AGGATCATCTATGCATGAAAGGAATG 59.340 38.462 10.16 0.24 36.36 2.67
2200 2210 6.791371 AGGATCATCTATGCATGAAAGGAAT 58.209 36.000 10.16 0.00 36.36 3.01
2201 2211 6.196918 AGGATCATCTATGCATGAAAGGAA 57.803 37.500 10.16 0.00 36.36 3.36
2202 2212 5.837770 AGGATCATCTATGCATGAAAGGA 57.162 39.130 10.16 1.98 36.36 3.36
2203 2213 6.149640 CAGAAGGATCATCTATGCATGAAAGG 59.850 42.308 10.16 0.00 36.36 3.11
2204 2214 6.935208 TCAGAAGGATCATCTATGCATGAAAG 59.065 38.462 10.16 0.00 36.36 2.62
2205 2215 6.834107 TCAGAAGGATCATCTATGCATGAAA 58.166 36.000 10.16 0.00 36.36 2.69
2206 2216 6.429521 TCAGAAGGATCATCTATGCATGAA 57.570 37.500 10.16 0.00 36.36 2.57
2207 2217 5.569026 GCTCAGAAGGATCATCTATGCATGA 60.569 44.000 10.16 5.36 37.20 3.07
2208 2218 4.632251 GCTCAGAAGGATCATCTATGCATG 59.368 45.833 10.16 0.00 0.00 4.06
2209 2219 4.532916 AGCTCAGAAGGATCATCTATGCAT 59.467 41.667 3.79 3.79 31.16 3.96
2210 2220 3.902467 AGCTCAGAAGGATCATCTATGCA 59.098 43.478 17.77 0.00 31.16 3.96
2211 2221 4.540359 AGCTCAGAAGGATCATCTATGC 57.460 45.455 0.00 5.71 0.00 3.14
2212 2222 5.701750 CCAAAGCTCAGAAGGATCATCTATG 59.298 44.000 0.00 0.00 0.00 2.23
2213 2223 5.605908 TCCAAAGCTCAGAAGGATCATCTAT 59.394 40.000 0.00 0.00 0.00 1.98
2214 2224 4.964897 TCCAAAGCTCAGAAGGATCATCTA 59.035 41.667 0.00 0.00 0.00 1.98
2215 2225 3.779183 TCCAAAGCTCAGAAGGATCATCT 59.221 43.478 0.00 0.00 0.00 2.90
2216 2226 4.148128 TCCAAAGCTCAGAAGGATCATC 57.852 45.455 0.00 0.00 0.00 2.92
2217 2227 4.018597 ACTTCCAAAGCTCAGAAGGATCAT 60.019 41.667 18.97 0.00 41.06 2.45
2218 2228 3.328931 ACTTCCAAAGCTCAGAAGGATCA 59.671 43.478 18.97 0.00 41.06 2.92
2219 2229 3.949132 ACTTCCAAAGCTCAGAAGGATC 58.051 45.455 18.97 0.00 41.06 3.36
2220 2230 4.323868 GGTACTTCCAAAGCTCAGAAGGAT 60.324 45.833 18.97 6.87 41.06 3.24
2221 2231 3.008049 GGTACTTCCAAAGCTCAGAAGGA 59.992 47.826 18.97 11.52 41.06 3.36
2222 2232 3.008485 AGGTACTTCCAAAGCTCAGAAGG 59.992 47.826 18.97 4.88 41.06 3.46
2223 2233 4.278975 AGGTACTTCCAAAGCTCAGAAG 57.721 45.455 15.21 15.21 42.19 2.85
2239 2249 2.755103 CAATCTTCCAGGGCAAAGGTAC 59.245 50.000 0.00 0.00 0.00 3.34
2240 2250 2.378547 ACAATCTTCCAGGGCAAAGGTA 59.621 45.455 0.00 0.00 0.00 3.08
2241 2251 1.147817 ACAATCTTCCAGGGCAAAGGT 59.852 47.619 0.00 0.00 0.00 3.50
2242 2252 1.821136 GACAATCTTCCAGGGCAAAGG 59.179 52.381 0.00 0.00 0.00 3.11
2243 2253 1.821136 GGACAATCTTCCAGGGCAAAG 59.179 52.381 0.00 0.00 35.49 2.77
2244 2254 1.549950 GGGACAATCTTCCAGGGCAAA 60.550 52.381 0.00 0.00 37.40 3.68
2245 2255 0.039618 GGGACAATCTTCCAGGGCAA 59.960 55.000 0.00 0.00 37.40 4.52
2246 2256 1.691219 GGGACAATCTTCCAGGGCA 59.309 57.895 0.00 0.00 37.40 5.36
2247 2257 1.452108 CGGGACAATCTTCCAGGGC 60.452 63.158 0.00 0.00 37.40 5.19
2248 2258 0.392998 CACGGGACAATCTTCCAGGG 60.393 60.000 0.00 0.00 37.40 4.45
2249 2259 0.613260 TCACGGGACAATCTTCCAGG 59.387 55.000 0.00 0.00 37.40 4.45
2250 2260 2.679837 CAATCACGGGACAATCTTCCAG 59.320 50.000 0.00 0.00 37.40 3.86
2251 2261 2.304470 TCAATCACGGGACAATCTTCCA 59.696 45.455 0.00 0.00 37.40 3.53
2252 2262 2.939103 CTCAATCACGGGACAATCTTCC 59.061 50.000 0.00 0.00 34.52 3.46
2253 2263 2.939103 CCTCAATCACGGGACAATCTTC 59.061 50.000 0.00 0.00 0.00 2.87
2254 2264 2.356125 CCCTCAATCACGGGACAATCTT 60.356 50.000 0.00 0.00 43.44 2.40
2255 2265 1.210478 CCCTCAATCACGGGACAATCT 59.790 52.381 0.00 0.00 43.44 2.40
2256 2266 1.209504 TCCCTCAATCACGGGACAATC 59.790 52.381 0.00 0.00 44.42 2.67
2257 2267 1.285280 TCCCTCAATCACGGGACAAT 58.715 50.000 0.00 0.00 44.42 2.71
2258 2268 2.766698 TCCCTCAATCACGGGACAA 58.233 52.632 0.00 0.00 44.42 3.18
2259 2269 4.551148 TCCCTCAATCACGGGACA 57.449 55.556 0.00 0.00 44.42 4.02
2262 2272 2.171448 AGAGAAATCCCTCAATCACGGG 59.829 50.000 0.00 0.00 42.05 5.28
2263 2273 3.550437 AGAGAAATCCCTCAATCACGG 57.450 47.619 0.00 0.00 35.68 4.94
2264 2274 5.011090 TGTAGAGAAATCCCTCAATCACG 57.989 43.478 0.00 0.00 35.68 4.35
2265 2275 6.410540 AGTTGTAGAGAAATCCCTCAATCAC 58.589 40.000 0.00 0.00 35.68 3.06
2266 2276 6.627087 AGTTGTAGAGAAATCCCTCAATCA 57.373 37.500 0.00 0.00 35.68 2.57
2267 2277 9.050601 CAATAGTTGTAGAGAAATCCCTCAATC 57.949 37.037 0.00 0.00 35.68 2.67
2268 2278 7.500559 GCAATAGTTGTAGAGAAATCCCTCAAT 59.499 37.037 0.00 0.00 35.68 2.57
2269 2279 6.823689 GCAATAGTTGTAGAGAAATCCCTCAA 59.176 38.462 0.00 0.00 35.68 3.02
2270 2280 6.349300 GCAATAGTTGTAGAGAAATCCCTCA 58.651 40.000 0.00 0.00 35.68 3.86
2271 2281 5.463724 CGCAATAGTTGTAGAGAAATCCCTC 59.536 44.000 0.00 0.00 0.00 4.30
2272 2282 5.128827 TCGCAATAGTTGTAGAGAAATCCCT 59.871 40.000 0.00 0.00 0.00 4.20
2273 2283 5.357257 TCGCAATAGTTGTAGAGAAATCCC 58.643 41.667 0.00 0.00 0.00 3.85
2274 2284 7.484035 AATCGCAATAGTTGTAGAGAAATCC 57.516 36.000 0.00 0.00 0.00 3.01
2277 2287 9.647797 TCTTTAATCGCAATAGTTGTAGAGAAA 57.352 29.630 0.00 0.00 0.00 2.52
2278 2288 9.084164 GTCTTTAATCGCAATAGTTGTAGAGAA 57.916 33.333 0.00 0.00 0.00 2.87
2279 2289 8.248253 TGTCTTTAATCGCAATAGTTGTAGAGA 58.752 33.333 0.00 0.00 0.00 3.10
2280 2290 8.407457 TGTCTTTAATCGCAATAGTTGTAGAG 57.593 34.615 0.00 0.00 0.00 2.43
2281 2291 8.942338 ATGTCTTTAATCGCAATAGTTGTAGA 57.058 30.769 0.00 0.00 0.00 2.59
2291 2301 8.279800 CGGATTTGTATATGTCTTTAATCGCAA 58.720 33.333 0.00 0.00 0.00 4.85
2292 2302 7.654116 TCGGATTTGTATATGTCTTTAATCGCA 59.346 33.333 0.00 0.00 0.00 5.10
2293 2303 8.014322 TCGGATTTGTATATGTCTTTAATCGC 57.986 34.615 0.00 0.00 0.00 4.58
2298 2308 9.104965 CCTGTTTCGGATTTGTATATGTCTTTA 57.895 33.333 0.00 0.00 0.00 1.85
2299 2309 7.067008 CCCTGTTTCGGATTTGTATATGTCTTT 59.933 37.037 0.00 0.00 0.00 2.52
2300 2310 6.542370 CCCTGTTTCGGATTTGTATATGTCTT 59.458 38.462 0.00 0.00 0.00 3.01
2301 2311 6.055588 CCCTGTTTCGGATTTGTATATGTCT 58.944 40.000 0.00 0.00 0.00 3.41
2302 2312 6.053005 TCCCTGTTTCGGATTTGTATATGTC 58.947 40.000 0.00 0.00 0.00 3.06
2303 2313 5.996644 TCCCTGTTTCGGATTTGTATATGT 58.003 37.500 0.00 0.00 0.00 2.29
2304 2314 6.542370 ACTTCCCTGTTTCGGATTTGTATATG 59.458 38.462 0.00 0.00 0.00 1.78
2305 2315 6.659824 ACTTCCCTGTTTCGGATTTGTATAT 58.340 36.000 0.00 0.00 0.00 0.86
2306 2316 6.057321 ACTTCCCTGTTTCGGATTTGTATA 57.943 37.500 0.00 0.00 0.00 1.47
2307 2317 4.918588 ACTTCCCTGTTTCGGATTTGTAT 58.081 39.130 0.00 0.00 0.00 2.29
2308 2318 4.360951 ACTTCCCTGTTTCGGATTTGTA 57.639 40.909 0.00 0.00 0.00 2.41
2309 2319 3.223674 ACTTCCCTGTTTCGGATTTGT 57.776 42.857 0.00 0.00 0.00 2.83
2310 2320 3.124636 CGTACTTCCCTGTTTCGGATTTG 59.875 47.826 0.00 0.00 0.00 2.32
2311 2321 3.007182 TCGTACTTCCCTGTTTCGGATTT 59.993 43.478 0.00 0.00 0.00 2.17
2312 2322 2.564062 TCGTACTTCCCTGTTTCGGATT 59.436 45.455 0.00 0.00 0.00 3.01
2313 2323 2.173519 TCGTACTTCCCTGTTTCGGAT 58.826 47.619 0.00 0.00 0.00 4.18
2314 2324 1.619654 TCGTACTTCCCTGTTTCGGA 58.380 50.000 0.00 0.00 0.00 4.55
2315 2325 2.443887 TTCGTACTTCCCTGTTTCGG 57.556 50.000 0.00 0.00 0.00 4.30
2316 2326 3.387397 AGTTTCGTACTTCCCTGTTTCG 58.613 45.455 0.00 0.00 31.29 3.46
2317 2327 6.073385 CCTTTAGTTTCGTACTTCCCTGTTTC 60.073 42.308 0.00 0.00 38.33 2.78
2318 2328 5.761726 CCTTTAGTTTCGTACTTCCCTGTTT 59.238 40.000 0.00 0.00 38.33 2.83
2319 2329 5.303165 CCTTTAGTTTCGTACTTCCCTGTT 58.697 41.667 0.00 0.00 38.33 3.16
2320 2330 4.262765 CCCTTTAGTTTCGTACTTCCCTGT 60.263 45.833 0.00 0.00 38.33 4.00
2321 2331 4.020839 TCCCTTTAGTTTCGTACTTCCCTG 60.021 45.833 0.00 0.00 38.33 4.45
2322 2332 4.020751 GTCCCTTTAGTTTCGTACTTCCCT 60.021 45.833 0.00 0.00 38.33 4.20
2323 2333 4.020751 AGTCCCTTTAGTTTCGTACTTCCC 60.021 45.833 0.00 0.00 38.33 3.97
2324 2334 5.144692 AGTCCCTTTAGTTTCGTACTTCC 57.855 43.478 0.00 0.00 38.33 3.46
2325 2335 6.927936 AGAAAGTCCCTTTAGTTTCGTACTTC 59.072 38.462 0.00 0.00 41.61 3.01
2326 2336 6.824553 AGAAAGTCCCTTTAGTTTCGTACTT 58.175 36.000 0.00 0.00 41.61 2.24
2327 2337 6.267242 AGAGAAAGTCCCTTTAGTTTCGTACT 59.733 38.462 0.00 0.00 41.61 2.73
2328 2338 6.453943 AGAGAAAGTCCCTTTAGTTTCGTAC 58.546 40.000 0.00 0.00 41.61 3.67
2329 2339 6.569226 CGAGAGAAAGTCCCTTTAGTTTCGTA 60.569 42.308 0.00 0.00 41.61 3.43
2330 2340 5.539979 GAGAGAAAGTCCCTTTAGTTTCGT 58.460 41.667 0.00 0.00 41.61 3.85
2331 2341 4.621886 CGAGAGAAAGTCCCTTTAGTTTCG 59.378 45.833 0.00 0.00 41.61 3.46
2332 2342 5.780984 TCGAGAGAAAGTCCCTTTAGTTTC 58.219 41.667 0.00 0.00 38.53 2.78
2333 2343 5.803237 TCGAGAGAAAGTCCCTTTAGTTT 57.197 39.130 0.00 0.00 33.49 2.66
2342 2352 3.429684 GGGAGTTCATCGAGAGAAAGTCC 60.430 52.174 16.92 16.92 44.33 3.85
2343 2353 7.576661 ACTAGGGAGTTCATCGAGAGAAAGTC 61.577 46.154 4.83 5.45 36.50 3.01
2344 2354 5.808380 ACTAGGGAGTTCATCGAGAGAAAGT 60.808 44.000 4.83 2.16 36.50 2.66
2345 2355 4.642885 ACTAGGGAGTTCATCGAGAGAAAG 59.357 45.833 4.83 1.63 36.50 2.62
2346 2356 4.601084 ACTAGGGAGTTCATCGAGAGAAA 58.399 43.478 4.83 0.00 36.50 2.52
2347 2357 4.237976 ACTAGGGAGTTCATCGAGAGAA 57.762 45.455 0.00 0.00 36.50 2.87
2348 2358 3.935818 ACTAGGGAGTTCATCGAGAGA 57.064 47.619 0.00 0.00 37.23 3.10
2364 2374 7.518697 TGCCTCAAAGCAAACATAGGAACTAG 61.519 42.308 0.00 0.00 42.10 2.57
2365 2375 5.747545 TGCCTCAAAGCAAACATAGGAACTA 60.748 40.000 0.00 0.00 42.73 2.24
2366 2376 3.507622 GCCTCAAAGCAAACATAGGAACT 59.492 43.478 0.00 0.00 46.37 3.01
2367 2377 3.255642 TGCCTCAAAGCAAACATAGGAAC 59.744 43.478 0.00 0.00 40.56 3.62
2368 2378 3.495331 TGCCTCAAAGCAAACATAGGAA 58.505 40.909 0.00 0.00 40.56 3.36
2369 2379 3.084039 CTGCCTCAAAGCAAACATAGGA 58.916 45.455 0.00 0.00 43.52 2.94
2370 2380 2.821969 ACTGCCTCAAAGCAAACATAGG 59.178 45.455 0.00 0.00 43.52 2.57
2371 2381 3.829948 CACTGCCTCAAAGCAAACATAG 58.170 45.455 0.00 0.00 43.52 2.23
2372 2382 2.030007 GCACTGCCTCAAAGCAAACATA 60.030 45.455 0.00 0.00 43.52 2.29
2373 2383 1.269936 GCACTGCCTCAAAGCAAACAT 60.270 47.619 0.00 0.00 43.52 2.71
2374 2384 0.102844 GCACTGCCTCAAAGCAAACA 59.897 50.000 0.00 0.00 43.52 2.83
2375 2385 0.386838 AGCACTGCCTCAAAGCAAAC 59.613 50.000 0.00 0.00 43.52 2.93
2376 2386 1.979855 TAGCACTGCCTCAAAGCAAA 58.020 45.000 0.00 0.00 43.52 3.68
2377 2387 1.979855 TTAGCACTGCCTCAAAGCAA 58.020 45.000 0.00 0.00 43.52 3.91
2378 2388 2.205022 ATTAGCACTGCCTCAAAGCA 57.795 45.000 0.00 0.00 41.46 3.91
2379 2389 2.872370 CAATTAGCACTGCCTCAAAGC 58.128 47.619 0.00 0.00 0.00 3.51
2380 2390 2.872370 GCAATTAGCACTGCCTCAAAG 58.128 47.619 0.00 0.00 44.79 2.77
2392 2402 7.919690 TGATAGTTCACACATTAGCAATTAGC 58.080 34.615 0.00 0.00 46.19 3.09
2429 2439 9.958180 TTTGATGTTAGAAGTGATTCCAATCTA 57.042 29.630 1.13 0.00 36.39 1.98
2430 2440 8.868522 TTTGATGTTAGAAGTGATTCCAATCT 57.131 30.769 1.13 0.00 36.39 2.40
2431 2441 8.950210 TCTTTGATGTTAGAAGTGATTCCAATC 58.050 33.333 0.00 0.00 35.97 2.67
2432 2442 8.868522 TCTTTGATGTTAGAAGTGATTCCAAT 57.131 30.769 0.00 0.00 0.00 3.16
2433 2443 8.868522 ATCTTTGATGTTAGAAGTGATTCCAA 57.131 30.769 0.00 0.00 0.00 3.53
2434 2444 9.605275 CTATCTTTGATGTTAGAAGTGATTCCA 57.395 33.333 0.00 0.00 0.00 3.53
2435 2445 9.050601 CCTATCTTTGATGTTAGAAGTGATTCC 57.949 37.037 0.00 0.00 0.00 3.01
2436 2446 9.823647 TCCTATCTTTGATGTTAGAAGTGATTC 57.176 33.333 0.00 0.00 0.00 2.52
2444 2454 9.618890 CCAGATTTTCCTATCTTTGATGTTAGA 57.381 33.333 0.00 0.00 32.60 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.