Multiple sequence alignment - TraesCS5A01G429500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G429500 chr5A 100.000 5973 0 0 1 5973 613598740 613592768 0.000000e+00 11031.0
1 TraesCS5A01G429500 chr5A 81.143 350 54 10 178 520 676752126 676751782 2.740000e-68 270.0
2 TraesCS5A01G429500 chr5A 87.255 102 13 0 1 102 383565541 383565642 3.780000e-22 117.0
3 TraesCS5A01G429500 chr5A 89.412 85 9 0 2138 2222 382114858 382114942 2.280000e-19 108.0
4 TraesCS5A01G429500 chr5D 94.662 2379 94 9 2178 4549 491446793 491444441 0.000000e+00 3659.0
5 TraesCS5A01G429500 chr5D 88.667 1800 111 35 292 2072 491448630 491446905 0.000000e+00 2108.0
6 TraesCS5A01G429500 chr5D 90.224 1115 61 17 4543 5613 491444400 491443290 0.000000e+00 1411.0
7 TraesCS5A01G429500 chr5D 93.353 346 20 2 5620 5963 491443048 491442704 5.340000e-140 508.0
8 TraesCS5A01G429500 chr5D 86.275 102 13 1 1 102 297645105 297645005 6.330000e-20 110.0
9 TraesCS5A01G429500 chr5B 93.686 2344 98 15 2218 4549 606029079 606026774 0.000000e+00 3463.0
10 TraesCS5A01G429500 chr5B 88.803 1429 97 23 725 2143 606030449 606029074 0.000000e+00 1694.0
11 TraesCS5A01G429500 chr5B 91.638 873 48 9 4543 5408 606026733 606025879 0.000000e+00 1184.0
12 TraesCS5A01G429500 chr5B 91.111 450 35 4 5527 5973 606025633 606025186 6.620000e-169 604.0
13 TraesCS5A01G429500 chr5B 92.049 327 23 3 403 727 606037437 606037112 1.960000e-124 457.0
14 TraesCS5A01G429500 chr5B 80.726 358 60 7 178 532 133870977 133870626 2.740000e-68 270.0
15 TraesCS5A01G429500 chr4A 83.025 324 43 10 179 495 175416305 175415987 3.520000e-72 283.0
16 TraesCS5A01G429500 chr3D 82.132 319 48 7 178 490 590126702 590127017 1.280000e-66 265.0
17 TraesCS5A01G429500 chr6B 80.278 360 60 6 178 536 483377246 483377595 1.650000e-65 261.0
18 TraesCS5A01G429500 chr6B 87.255 102 13 0 1 102 355664277 355664378 3.780000e-22 117.0
19 TraesCS5A01G429500 chr6B 85.294 102 15 0 1 102 171466294 171466395 8.190000e-19 106.0
20 TraesCS5A01G429500 chr3A 82.935 293 42 8 200 489 577630469 577630756 2.140000e-64 257.0
21 TraesCS5A01G429500 chr3A 89.412 85 9 0 2138 2222 419336097 419336181 2.280000e-19 108.0
22 TraesCS5A01G429500 chr7B 82.623 305 36 12 178 472 624466030 624466327 2.760000e-63 254.0
23 TraesCS5A01G429500 chr7B 84.848 99 15 0 4 102 115427698 115427600 3.810000e-17 100.0
24 TraesCS5A01G429500 chr3B 82.550 298 43 9 179 471 117953102 117952809 2.760000e-63 254.0
25 TraesCS5A01G429500 chr3B 85.567 97 14 0 1 97 491657110 491657206 1.060000e-17 102.0
26 TraesCS5A01G429500 chr4D 89.216 102 11 0 1 102 35233943 35234044 1.750000e-25 128.0
27 TraesCS5A01G429500 chr2B 95.890 73 3 0 2155 2227 331012785 331012713 1.050000e-22 119.0
28 TraesCS5A01G429500 chr2B 87.500 88 11 0 2138 2225 247368538 247368625 1.060000e-17 102.0
29 TraesCS5A01G429500 chr2B 94.286 35 2 0 5430 5464 72175558 72175592 3.000000e-03 54.7
30 TraesCS5A01G429500 chrUn 91.667 84 7 0 2139 2222 50872449 50872366 3.780000e-22 117.0
31 TraesCS5A01G429500 chrUn 91.667 84 7 0 2139 2222 50890361 50890278 3.780000e-22 117.0
32 TraesCS5A01G429500 chrUn 100.000 30 0 0 5435 5464 29880060 29880031 8.360000e-04 56.5
33 TraesCS5A01G429500 chr6D 87.255 102 13 0 1 102 352364094 352364195 3.780000e-22 117.0
34 TraesCS5A01G429500 chr6D 97.059 34 0 1 5427 5460 56299696 56299728 8.360000e-04 56.5
35 TraesCS5A01G429500 chr2D 94.521 73 4 0 2155 2227 218045342 218045414 4.890000e-21 113.0
36 TraesCS5A01G429500 chr2D 89.535 86 9 0 2139 2224 75504894 75504979 6.330000e-20 110.0
37 TraesCS5A01G429500 chr2D 100.000 28 0 0 5427 5454 637030673 637030700 1.100000e-02 52.8
38 TraesCS5A01G429500 chr1B 85.294 102 15 0 1 102 411090272 411090171 8.190000e-19 106.0
39 TraesCS5A01G429500 chr1B 97.222 36 1 0 5431 5466 675952281 675952246 1.800000e-05 62.1
40 TraesCS5A01G429500 chr6A 87.302 63 7 1 5420 5481 599895066 599895004 2.990000e-08 71.3
41 TraesCS5A01G429500 chr4B 97.143 35 1 0 5430 5464 667841525 667841559 6.460000e-05 60.2
42 TraesCS5A01G429500 chr1D 88.000 50 6 0 5423 5472 350901247 350901198 6.460000e-05 60.2
43 TraesCS5A01G429500 chr7A 96.970 33 1 0 5436 5468 706402586 706402554 8.360000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G429500 chr5A 613592768 613598740 5972 True 11031.00 11031 100.0000 1 5973 1 chr5A.!!$R1 5972
1 TraesCS5A01G429500 chr5D 491442704 491448630 5926 True 1921.50 3659 91.7265 292 5963 4 chr5D.!!$R2 5671
2 TraesCS5A01G429500 chr5B 606025186 606030449 5263 True 1736.25 3463 91.3095 725 5973 4 chr5B.!!$R3 5248

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 461 0.104304 GCTCCGTGGACCGATACATT 59.896 55.000 0.00 0.00 39.56 2.71 F
1299 1307 1.067071 CCGGTGTGGAGAAGGTAGTTC 60.067 57.143 0.00 0.00 42.00 3.01 F
1592 1603 1.202592 TGCGGTTGTCACTACATGTGT 60.203 47.619 9.11 1.62 46.27 3.72 F
2934 2979 1.228737 TGCACCCCTAAACCTTGCC 60.229 57.895 0.00 0.00 31.94 4.52 F
3352 3397 2.474410 AAGCCCTAAAAGGTCTGTCG 57.526 50.000 0.00 0.00 31.93 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1463 1474 0.033699 AGATGGGCTGAAAGAAGGGC 60.034 55.000 0.00 0.00 34.07 5.19 R
3126 3171 0.751643 AGGGACACAGCACAACCAAC 60.752 55.000 0.00 0.00 0.00 3.77 R
3372 3417 2.240667 ACATTAGGGACTGCAGCTCAAT 59.759 45.455 15.27 3.79 41.52 2.57 R
4105 4155 1.377725 ACATAGTGTGCAGCCCAGC 60.378 57.895 0.00 0.00 0.00 4.85 R
5152 5263 1.376037 GGGCGACTCCACCTTTCAG 60.376 63.158 0.00 0.00 36.21 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.728373 GGCCCCACTACCCACCAG 61.728 72.222 0.00 0.00 0.00 4.00
19 20 3.728373 GCCCCACTACCCACCAGG 61.728 72.222 0.00 0.00 43.78 4.45
56 57 3.760035 CGCGCCCTGGTGTCTAGT 61.760 66.667 0.00 0.00 0.00 2.57
57 58 2.125512 GCGCCCTGGTGTCTAGTG 60.126 66.667 0.00 0.00 0.00 2.74
58 59 2.125512 CGCCCTGGTGTCTAGTGC 60.126 66.667 0.00 0.00 0.00 4.40
59 60 2.269241 GCCCTGGTGTCTAGTGCC 59.731 66.667 0.00 0.00 0.00 5.01
60 61 2.990479 CCCTGGTGTCTAGTGCCC 59.010 66.667 0.00 0.00 0.00 5.36
61 62 2.670148 CCCTGGTGTCTAGTGCCCC 61.670 68.421 0.00 0.00 0.00 5.80
62 63 2.670148 CCTGGTGTCTAGTGCCCCC 61.670 68.421 0.00 0.00 0.00 5.40
85 86 4.459089 GCCTCCTCCCGTGTGCTC 62.459 72.222 0.00 0.00 0.00 4.26
86 87 3.775654 CCTCCTCCCGTGTGCTCC 61.776 72.222 0.00 0.00 0.00 4.70
87 88 2.997315 CTCCTCCCGTGTGCTCCA 60.997 66.667 0.00 0.00 0.00 3.86
88 89 2.525629 TCCTCCCGTGTGCTCCAA 60.526 61.111 0.00 0.00 0.00 3.53
89 90 2.111999 CTCCTCCCGTGTGCTCCAAA 62.112 60.000 0.00 0.00 0.00 3.28
90 91 1.228124 CCTCCCGTGTGCTCCAAAA 60.228 57.895 0.00 0.00 0.00 2.44
91 92 1.237285 CCTCCCGTGTGCTCCAAAAG 61.237 60.000 0.00 0.00 0.00 2.27
101 102 3.753787 CTCCAAAAGCTTCCAGGGT 57.246 52.632 0.00 0.00 0.00 4.34
102 103 1.251251 CTCCAAAAGCTTCCAGGGTG 58.749 55.000 0.00 0.00 0.00 4.61
103 104 0.850100 TCCAAAAGCTTCCAGGGTGA 59.150 50.000 0.00 0.00 0.00 4.02
104 105 1.428912 TCCAAAAGCTTCCAGGGTGAT 59.571 47.619 0.00 0.00 0.00 3.06
105 106 2.647299 TCCAAAAGCTTCCAGGGTGATA 59.353 45.455 0.00 0.00 0.00 2.15
106 107 3.269381 TCCAAAAGCTTCCAGGGTGATAT 59.731 43.478 0.00 0.00 0.00 1.63
107 108 4.476846 TCCAAAAGCTTCCAGGGTGATATA 59.523 41.667 0.00 0.00 0.00 0.86
108 109 5.044476 TCCAAAAGCTTCCAGGGTGATATAA 60.044 40.000 0.00 0.00 0.00 0.98
109 110 5.300286 CCAAAAGCTTCCAGGGTGATATAAG 59.700 44.000 0.00 0.00 0.00 1.73
110 111 5.975988 AAAGCTTCCAGGGTGATATAAGA 57.024 39.130 0.00 0.00 0.00 2.10
111 112 4.965200 AGCTTCCAGGGTGATATAAGAC 57.035 45.455 0.00 0.00 0.00 3.01
112 113 3.648545 AGCTTCCAGGGTGATATAAGACC 59.351 47.826 0.00 0.00 0.00 3.85
120 121 4.009370 GGTGATATAAGACCCTGGAAGC 57.991 50.000 0.00 0.00 0.00 3.86
121 122 3.648545 GGTGATATAAGACCCTGGAAGCT 59.351 47.826 0.00 0.00 0.00 3.74
122 123 4.262678 GGTGATATAAGACCCTGGAAGCTC 60.263 50.000 0.00 0.00 0.00 4.09
123 124 3.574396 TGATATAAGACCCTGGAAGCTCG 59.426 47.826 0.00 0.00 0.00 5.03
124 125 1.123928 ATAAGACCCTGGAAGCTCGG 58.876 55.000 0.00 0.00 0.00 4.63
125 126 0.252103 TAAGACCCTGGAAGCTCGGT 60.252 55.000 0.00 0.00 0.00 4.69
126 127 1.545706 AAGACCCTGGAAGCTCGGTC 61.546 60.000 0.00 8.18 41.43 4.79
127 128 1.985116 GACCCTGGAAGCTCGGTCT 60.985 63.158 0.00 0.00 39.04 3.85
128 129 2.232298 GACCCTGGAAGCTCGGTCTG 62.232 65.000 0.00 0.00 39.04 3.51
129 130 2.581354 CCTGGAAGCTCGGTCTGG 59.419 66.667 0.00 0.00 0.00 3.86
130 131 2.286523 CCTGGAAGCTCGGTCTGGT 61.287 63.158 0.00 0.00 0.00 4.00
131 132 1.079543 CTGGAAGCTCGGTCTGGTG 60.080 63.158 0.00 0.00 0.00 4.17
132 133 1.533033 TGGAAGCTCGGTCTGGTGA 60.533 57.895 0.00 0.00 0.00 4.02
133 134 1.079750 GGAAGCTCGGTCTGGTGAC 60.080 63.158 0.00 0.00 42.22 3.67
134 135 1.444553 GAAGCTCGGTCTGGTGACG 60.445 63.158 0.00 0.00 43.79 4.35
135 136 2.143594 GAAGCTCGGTCTGGTGACGT 62.144 60.000 0.00 0.00 43.79 4.34
136 137 0.892358 AAGCTCGGTCTGGTGACGTA 60.892 55.000 0.00 0.00 43.79 3.57
137 138 0.680280 AGCTCGGTCTGGTGACGTAT 60.680 55.000 0.00 0.00 43.79 3.06
138 139 0.248539 GCTCGGTCTGGTGACGTATC 60.249 60.000 0.00 0.00 43.79 2.24
139 140 1.092348 CTCGGTCTGGTGACGTATCA 58.908 55.000 0.00 0.00 43.79 2.15
140 141 1.064208 CTCGGTCTGGTGACGTATCAG 59.936 57.143 0.00 0.00 43.79 2.90
150 151 3.511699 GTGACGTATCAGCTGATGAACA 58.488 45.455 34.48 24.58 42.53 3.18
151 152 3.926527 GTGACGTATCAGCTGATGAACAA 59.073 43.478 34.48 15.16 42.53 2.83
152 153 4.388773 GTGACGTATCAGCTGATGAACAAA 59.611 41.667 34.48 14.43 42.53 2.83
153 154 5.063944 GTGACGTATCAGCTGATGAACAAAT 59.936 40.000 34.48 16.06 42.53 2.32
154 155 6.255670 GTGACGTATCAGCTGATGAACAAATA 59.744 38.462 34.48 12.97 42.53 1.40
155 156 6.986231 TGACGTATCAGCTGATGAACAAATAT 59.014 34.615 34.48 11.54 42.53 1.28
156 157 7.169813 TGACGTATCAGCTGATGAACAAATATC 59.830 37.037 34.48 19.03 42.53 1.63
157 158 6.144563 ACGTATCAGCTGATGAACAAATATCG 59.855 38.462 34.48 22.30 42.53 2.92
158 159 6.363357 CGTATCAGCTGATGAACAAATATCGA 59.637 38.462 34.48 10.81 42.53 3.59
159 160 7.062722 CGTATCAGCTGATGAACAAATATCGAT 59.937 37.037 34.48 9.75 42.53 3.59
160 161 9.358872 GTATCAGCTGATGAACAAATATCGATA 57.641 33.333 34.48 7.75 42.53 2.92
162 163 8.248117 TCAGCTGATGAACAAATATCGATATG 57.752 34.615 18.42 11.16 34.02 1.78
163 164 7.874528 TCAGCTGATGAACAAATATCGATATGT 59.125 33.333 18.42 10.56 34.02 2.29
164 165 8.501580 CAGCTGATGAACAAATATCGATATGTT 58.498 33.333 19.44 19.44 38.62 2.71
165 166 8.501580 AGCTGATGAACAAATATCGATATGTTG 58.498 33.333 22.77 23.36 36.22 3.33
166 167 7.747799 GCTGATGAACAAATATCGATATGTTGG 59.252 37.037 22.77 13.73 36.22 3.77
167 168 8.900983 TGATGAACAAATATCGATATGTTGGA 57.099 30.769 22.77 12.90 36.22 3.53
168 169 8.992073 TGATGAACAAATATCGATATGTTGGAG 58.008 33.333 22.77 8.57 36.22 3.86
169 170 9.208022 GATGAACAAATATCGATATGTTGGAGA 57.792 33.333 22.77 14.26 36.22 3.71
170 171 8.365399 TGAACAAATATCGATATGTTGGAGAC 57.635 34.615 22.77 12.19 36.22 3.36
171 172 7.169140 TGAACAAATATCGATATGTTGGAGACG 59.831 37.037 22.77 7.08 36.22 4.18
172 173 6.513180 ACAAATATCGATATGTTGGAGACGT 58.487 36.000 26.27 12.56 0.00 4.34
173 174 7.654568 ACAAATATCGATATGTTGGAGACGTA 58.345 34.615 26.27 2.57 34.38 3.57
174 175 8.304596 ACAAATATCGATATGTTGGAGACGTAT 58.695 33.333 26.27 12.59 41.95 3.06
175 176 8.799091 CAAATATCGATATGTTGGAGACGTATC 58.201 37.037 18.42 0.37 46.73 2.24
180 181 2.654749 TGTTGGAGACGTATCAGCTG 57.345 50.000 12.92 7.63 0.00 4.24
181 182 1.281899 GTTGGAGACGTATCAGCTGC 58.718 55.000 12.92 0.00 0.00 5.25
182 183 0.175760 TTGGAGACGTATCAGCTGCC 59.824 55.000 12.92 1.96 0.00 4.85
183 184 1.299468 GGAGACGTATCAGCTGCCG 60.299 63.158 12.92 13.35 0.00 5.69
184 185 1.725557 GGAGACGTATCAGCTGCCGA 61.726 60.000 21.58 1.86 0.00 5.54
185 186 0.317436 GAGACGTATCAGCTGCCGAG 60.317 60.000 21.58 11.11 0.00 4.63
186 187 0.748367 AGACGTATCAGCTGCCGAGA 60.748 55.000 21.58 1.13 0.00 4.04
187 188 0.317436 GACGTATCAGCTGCCGAGAG 60.317 60.000 21.58 9.02 0.00 3.20
199 200 4.554163 CGAGAGGTCACGTTGGTC 57.446 61.111 0.00 0.00 0.00 4.02
200 201 1.658114 CGAGAGGTCACGTTGGTCA 59.342 57.895 0.00 0.00 0.00 4.02
201 202 0.387367 CGAGAGGTCACGTTGGTCAG 60.387 60.000 0.00 0.00 0.00 3.51
202 203 0.667792 GAGAGGTCACGTTGGTCAGC 60.668 60.000 0.00 0.00 0.00 4.26
203 204 2.022129 GAGGTCACGTTGGTCAGCG 61.022 63.158 5.71 5.71 40.90 5.18
204 205 3.712881 GGTCACGTTGGTCAGCGC 61.713 66.667 0.00 0.00 38.63 5.92
205 206 3.712881 GTCACGTTGGTCAGCGCC 61.713 66.667 2.29 0.00 38.63 6.53
221 222 3.474570 CCGCCTTCCCTCCCTCTG 61.475 72.222 0.00 0.00 0.00 3.35
222 223 3.474570 CGCCTTCCCTCCCTCTGG 61.475 72.222 0.00 0.00 0.00 3.86
223 224 2.285743 GCCTTCCCTCCCTCTGGT 60.286 66.667 0.00 0.00 0.00 4.00
224 225 2.371259 GCCTTCCCTCCCTCTGGTC 61.371 68.421 0.00 0.00 0.00 4.02
225 226 1.081092 CCTTCCCTCCCTCTGGTCA 59.919 63.158 0.00 0.00 0.00 4.02
226 227 1.268283 CCTTCCCTCCCTCTGGTCAC 61.268 65.000 0.00 0.00 0.00 3.67
227 228 0.545309 CTTCCCTCCCTCTGGTCACA 60.545 60.000 0.00 0.00 0.00 3.58
228 229 0.119155 TTCCCTCCCTCTGGTCACAT 59.881 55.000 0.00 0.00 0.00 3.21
229 230 0.325671 TCCCTCCCTCTGGTCACATC 60.326 60.000 0.00 0.00 0.00 3.06
230 231 1.680522 CCCTCCCTCTGGTCACATCG 61.681 65.000 0.00 0.00 0.00 3.84
231 232 1.142748 CTCCCTCTGGTCACATCGC 59.857 63.158 0.00 0.00 0.00 4.58
232 233 2.202797 CCCTCTGGTCACATCGCG 60.203 66.667 0.00 0.00 0.00 5.87
233 234 2.710902 CCCTCTGGTCACATCGCGA 61.711 63.158 13.09 13.09 0.00 5.87
234 235 1.517257 CCTCTGGTCACATCGCGAC 60.517 63.158 12.93 0.00 0.00 5.19
235 236 1.212751 CTCTGGTCACATCGCGACA 59.787 57.895 12.93 2.12 34.97 4.35
236 237 0.179127 CTCTGGTCACATCGCGACAT 60.179 55.000 12.93 0.00 34.97 3.06
237 238 0.179137 TCTGGTCACATCGCGACATC 60.179 55.000 12.93 0.04 34.97 3.06
238 239 0.458370 CTGGTCACATCGCGACATCA 60.458 55.000 12.93 0.96 34.97 3.07
239 240 0.458370 TGGTCACATCGCGACATCAG 60.458 55.000 12.93 1.43 34.97 2.90
240 241 0.458543 GGTCACATCGCGACATCAGT 60.459 55.000 12.93 2.16 34.97 3.41
241 242 0.642291 GTCACATCGCGACATCAGTG 59.358 55.000 12.93 15.32 33.43 3.66
242 243 1.078201 TCACATCGCGACATCAGTGC 61.078 55.000 12.93 0.00 0.00 4.40
243 244 1.811266 ACATCGCGACATCAGTGCC 60.811 57.895 12.93 0.00 0.00 5.01
244 245 2.583319 ATCGCGACATCAGTGCCG 60.583 61.111 12.93 0.00 34.09 5.69
245 246 3.063743 ATCGCGACATCAGTGCCGA 62.064 57.895 12.93 0.00 32.55 5.54
246 247 3.545481 CGCGACATCAGTGCCGAC 61.545 66.667 0.00 0.00 32.55 4.79
247 248 3.188786 GCGACATCAGTGCCGACC 61.189 66.667 0.00 0.00 32.55 4.79
248 249 2.573869 CGACATCAGTGCCGACCT 59.426 61.111 0.00 0.00 32.55 3.85
249 250 1.517257 CGACATCAGTGCCGACCTC 60.517 63.158 0.00 0.00 32.55 3.85
250 251 1.153549 GACATCAGTGCCGACCTCC 60.154 63.158 0.00 0.00 0.00 4.30
251 252 1.888436 GACATCAGTGCCGACCTCCA 61.888 60.000 0.00 0.00 0.00 3.86
252 253 1.448540 CATCAGTGCCGACCTCCAC 60.449 63.158 0.00 0.00 0.00 4.02
253 254 3.006756 ATCAGTGCCGACCTCCACG 62.007 63.158 0.00 0.00 37.07 4.94
254 255 3.991051 CAGTGCCGACCTCCACGT 61.991 66.667 0.00 0.00 37.07 4.49
255 256 3.991051 AGTGCCGACCTCCACGTG 61.991 66.667 9.08 9.08 37.07 4.49
259 260 3.374402 CCGACCTCCACGTGCTCT 61.374 66.667 10.91 0.00 0.00 4.09
260 261 2.126307 CGACCTCCACGTGCTCTG 60.126 66.667 10.91 0.31 0.00 3.35
261 262 2.262915 GACCTCCACGTGCTCTGG 59.737 66.667 10.91 11.02 0.00 3.86
262 263 3.302347 GACCTCCACGTGCTCTGGG 62.302 68.421 10.91 9.22 0.00 4.45
263 264 4.767255 CCTCCACGTGCTCTGGGC 62.767 72.222 10.91 0.00 42.22 5.36
264 265 4.767255 CTCCACGTGCTCTGGGCC 62.767 72.222 10.91 0.00 40.92 5.80
272 273 4.802051 GCTCTGGGCCGGCATGAA 62.802 66.667 30.85 9.83 34.27 2.57
273 274 2.194056 CTCTGGGCCGGCATGAAT 59.806 61.111 30.85 0.00 0.00 2.57
274 275 2.124193 TCTGGGCCGGCATGAATG 60.124 61.111 30.85 11.58 0.00 2.67
283 284 3.177600 GCATGAATGCGACACGGT 58.822 55.556 0.00 0.00 44.67 4.83
284 285 2.379054 GCATGAATGCGACACGGTA 58.621 52.632 0.00 0.00 44.67 4.02
285 286 0.724549 GCATGAATGCGACACGGTAA 59.275 50.000 0.00 0.00 44.67 2.85
286 287 1.267532 GCATGAATGCGACACGGTAAG 60.268 52.381 0.00 0.00 44.67 2.34
287 288 1.006832 ATGAATGCGACACGGTAAGC 58.993 50.000 0.00 0.00 0.00 3.09
288 289 1.343821 GAATGCGACACGGTAAGCG 59.656 57.895 0.00 0.00 0.00 4.68
289 290 2.020836 GAATGCGACACGGTAAGCGG 62.021 60.000 0.00 0.00 0.00 5.52
290 291 2.775032 AATGCGACACGGTAAGCGGT 62.775 55.000 0.00 0.00 0.00 5.68
336 337 0.469144 GGGGCAGTGAGGGTTTTTGA 60.469 55.000 0.00 0.00 0.00 2.69
341 342 2.352127 GCAGTGAGGGTTTTTGATGAGC 60.352 50.000 0.00 0.00 0.00 4.26
342 343 2.229784 CAGTGAGGGTTTTTGATGAGCC 59.770 50.000 0.00 0.00 0.00 4.70
399 400 4.803908 CGCAAAGCCCCCTCCCTC 62.804 72.222 0.00 0.00 0.00 4.30
400 401 3.661648 GCAAAGCCCCCTCCCTCA 61.662 66.667 0.00 0.00 0.00 3.86
457 461 0.104304 GCTCCGTGGACCGATACATT 59.896 55.000 0.00 0.00 39.56 2.71
471 475 2.951457 TACATTCTCGCGTTGGATGA 57.049 45.000 22.73 9.33 0.00 2.92
472 476 2.093306 ACATTCTCGCGTTGGATGAA 57.907 45.000 22.73 12.47 0.00 2.57
487 491 2.678336 GGATGAATTCCGTGGTTCAGAC 59.322 50.000 2.27 0.00 37.72 3.51
488 492 2.920724 TGAATTCCGTGGTTCAGACA 57.079 45.000 2.27 0.00 31.24 3.41
529 533 2.398588 TCGCCTTGGAGATGTCCTAAT 58.601 47.619 10.72 0.00 44.30 1.73
538 542 5.902681 TGGAGATGTCCTAATAACTCAACG 58.097 41.667 10.72 0.00 44.30 4.10
571 575 5.964477 AGAGGTTGTTAGATCTATTGTGGGA 59.036 40.000 2.58 0.00 0.00 4.37
573 577 6.653989 AGGTTGTTAGATCTATTGTGGGAAG 58.346 40.000 2.58 0.00 0.00 3.46
594 599 1.154093 TCGACGATGCTCGACAACC 60.154 57.895 11.64 0.00 43.74 3.77
630 635 5.123979 GTCTAAAAACCCTGATAGGCACTTG 59.876 44.000 0.00 0.00 41.75 3.16
632 637 1.372501 AACCCTGATAGGCACTTGGT 58.627 50.000 0.00 0.00 41.75 3.67
655 660 6.366332 GGTGAACACTTAGTCACTCAACTATG 59.634 42.308 4.96 0.00 34.63 2.23
671 676 9.692749 ACTCAACTATGTATGTTACCAATATCG 57.307 33.333 0.00 0.00 0.00 2.92
695 700 6.909357 CGAAATCAATCTAAAGACTTGGATGC 59.091 38.462 5.15 0.00 33.39 3.91
737 742 5.128663 AGCCCTTGACTTTACACAAACAAAT 59.871 36.000 0.00 0.00 0.00 2.32
761 766 2.829120 GGGCACTAAATTTTGGGCAGTA 59.171 45.455 24.69 0.00 33.94 2.74
762 767 3.450817 GGGCACTAAATTTTGGGCAGTAT 59.549 43.478 24.69 0.00 33.94 2.12
763 768 4.432712 GGCACTAAATTTTGGGCAGTATG 58.567 43.478 24.69 4.86 33.94 2.39
764 769 4.159506 GGCACTAAATTTTGGGCAGTATGA 59.840 41.667 24.69 0.00 39.69 2.15
765 770 5.343249 GCACTAAATTTTGGGCAGTATGAG 58.657 41.667 19.91 0.00 39.69 2.90
766 771 5.105756 GCACTAAATTTTGGGCAGTATGAGT 60.106 40.000 19.91 0.00 39.69 3.41
786 791 1.486211 AGTATGCTAGGGTTGAGCGT 58.514 50.000 0.00 0.00 43.19 5.07
927 933 2.243221 CCACCTCTCCCAAATCCAATCT 59.757 50.000 0.00 0.00 0.00 2.40
1112 1119 3.078836 CGACCCGCCCCTCCTAAA 61.079 66.667 0.00 0.00 0.00 1.85
1114 1121 1.920532 GACCCGCCCCTCCTAAAAT 59.079 57.895 0.00 0.00 0.00 1.82
1123 1130 3.388913 CCCCTCCTAAAATCACTCTCCT 58.611 50.000 0.00 0.00 0.00 3.69
1162 1169 2.916702 TGTGTGCTGATCTGTTCTGT 57.083 45.000 1.27 0.00 0.00 3.41
1299 1307 1.067071 CCGGTGTGGAGAAGGTAGTTC 60.067 57.143 0.00 0.00 42.00 3.01
1399 1410 1.592064 TCTGCTGACATTTTCGTGCA 58.408 45.000 0.00 0.00 35.72 4.57
1409 1420 3.432933 ACATTTTCGTGCATTTTGATGGC 59.567 39.130 0.00 0.00 0.00 4.40
1410 1421 2.077413 TTTCGTGCATTTTGATGGCC 57.923 45.000 0.00 0.00 0.00 5.36
1440 1451 5.396213 GCAGGTGAAGATGGAGAATAAGACT 60.396 44.000 0.00 0.00 0.00 3.24
1459 1470 4.109050 GACTTGGAAGATCGATGTGAGTC 58.891 47.826 0.54 7.65 0.00 3.36
1462 1473 2.159379 TGGAAGATCGATGTGAGTCGTG 60.159 50.000 0.54 0.00 42.07 4.35
1463 1474 2.455032 GAAGATCGATGTGAGTCGTGG 58.545 52.381 0.54 0.00 42.07 4.94
1484 1495 1.563410 CCCTTCTTTCAGCCCATCTCT 59.437 52.381 0.00 0.00 0.00 3.10
1487 1498 3.269178 CTTCTTTCAGCCCATCTCTGTC 58.731 50.000 0.00 0.00 33.48 3.51
1495 1506 2.026449 AGCCCATCTCTGTCTTTCCTTG 60.026 50.000 0.00 0.00 0.00 3.61
1500 1511 6.183347 CCCATCTCTGTCTTTCCTTGTTATT 58.817 40.000 0.00 0.00 0.00 1.40
1516 1527 9.237187 TCCTTGTTATTGTCACTATTATTGCAA 57.763 29.630 0.00 0.00 0.00 4.08
1535 1546 3.824151 CAATGTTGCGATGTGTCATTGA 58.176 40.909 8.00 0.00 44.28 2.57
1536 1547 4.228317 CAATGTTGCGATGTGTCATTGAA 58.772 39.130 8.00 0.00 44.28 2.69
1542 1553 4.725359 TGCGATGTGTCATTGAAGAATTG 58.275 39.130 1.65 0.00 0.00 2.32
1558 1569 8.256611 TGAAGAATTGACAGAAAGTAGTATGC 57.743 34.615 0.00 0.00 0.00 3.14
1559 1570 7.877612 TGAAGAATTGACAGAAAGTAGTATGCA 59.122 33.333 0.00 0.00 0.00 3.96
1560 1571 8.621532 AAGAATTGACAGAAAGTAGTATGCAA 57.378 30.769 0.00 0.00 0.00 4.08
1561 1572 8.621532 AGAATTGACAGAAAGTAGTATGCAAA 57.378 30.769 0.00 0.00 0.00 3.68
1562 1573 9.236006 AGAATTGACAGAAAGTAGTATGCAAAT 57.764 29.630 0.00 0.00 0.00 2.32
1583 1594 7.498225 CAAATAAAAAGTTATGCGGTTGTCAC 58.502 34.615 0.00 0.00 30.04 3.67
1584 1595 4.911514 AAAAAGTTATGCGGTTGTCACT 57.088 36.364 0.00 0.00 0.00 3.41
1585 1596 7.675962 ATAAAAAGTTATGCGGTTGTCACTA 57.324 32.000 0.00 0.00 0.00 2.74
1592 1603 1.202592 TGCGGTTGTCACTACATGTGT 60.203 47.619 9.11 1.62 46.27 3.72
1612 1623 3.264193 TGTCATGCATACAGGGAGTCTTT 59.736 43.478 0.00 0.00 0.00 2.52
1614 1625 3.776969 TCATGCATACAGGGAGTCTTTCT 59.223 43.478 0.00 0.00 0.00 2.52
1651 1662 5.049818 GCTATTGGTGAACATAGCACTGATC 60.050 44.000 6.34 0.00 41.04 2.92
1662 1673 5.250082 ACATAGCACTGATCCACCATGATAT 59.750 40.000 0.00 0.00 0.00 1.63
1669 1681 6.319405 CACTGATCCACCATGATATGAAACAA 59.681 38.462 0.00 0.00 0.00 2.83
1694 1706 5.039333 GCATTTGCCATTTCTCTGTATGTC 58.961 41.667 0.00 0.00 34.31 3.06
1704 1726 8.031864 CCATTTCTCTGTATGTCGATAGCTTAT 58.968 37.037 0.00 0.00 0.00 1.73
1705 1727 9.416794 CATTTCTCTGTATGTCGATAGCTTATT 57.583 33.333 0.00 0.00 0.00 1.40
1713 1735 8.847196 TGTATGTCGATAGCTTATTAGTGTTCT 58.153 33.333 0.00 0.00 0.00 3.01
1719 1741 4.286297 AGCTTATTAGTGTTCTGTGGCA 57.714 40.909 0.00 0.00 0.00 4.92
1723 1745 6.316390 AGCTTATTAGTGTTCTGTGGCATTAC 59.684 38.462 0.00 0.00 0.00 1.89
1725 1747 4.634012 TTAGTGTTCTGTGGCATTACCT 57.366 40.909 0.00 0.00 40.22 3.08
1732 1754 4.634012 TCTGTGGCATTACCTAAGTTGT 57.366 40.909 0.00 0.00 40.22 3.32
1742 1764 6.071616 GCATTACCTAAGTTGTCAATTTGGGA 60.072 38.462 24.16 8.21 33.75 4.37
1743 1765 7.363793 GCATTACCTAAGTTGTCAATTTGGGAT 60.364 37.037 24.16 13.62 33.75 3.85
1744 1766 9.184523 CATTACCTAAGTTGTCAATTTGGGATA 57.815 33.333 24.16 14.05 33.75 2.59
1745 1767 8.801882 TTACCTAAGTTGTCAATTTGGGATAG 57.198 34.615 24.16 5.64 33.75 2.08
1746 1768 5.652452 ACCTAAGTTGTCAATTTGGGATAGC 59.348 40.000 24.16 0.00 33.75 2.97
1747 1769 5.888161 CCTAAGTTGTCAATTTGGGATAGCT 59.112 40.000 15.57 0.00 31.62 3.32
1748 1770 7.054124 CCTAAGTTGTCAATTTGGGATAGCTA 58.946 38.462 15.57 0.00 31.62 3.32
1750 1772 6.949352 AGTTGTCAATTTGGGATAGCTATG 57.051 37.500 11.94 0.00 0.00 2.23
1751 1773 6.662755 AGTTGTCAATTTGGGATAGCTATGA 58.337 36.000 11.94 0.00 0.00 2.15
1752 1774 7.118723 AGTTGTCAATTTGGGATAGCTATGAA 58.881 34.615 11.94 1.18 0.00 2.57
1753 1775 7.781693 AGTTGTCAATTTGGGATAGCTATGAAT 59.218 33.333 11.94 3.51 0.00 2.57
1755 1777 9.812347 TTGTCAATTTGGGATAGCTATGAATAT 57.188 29.630 11.94 0.00 0.00 1.28
1756 1778 9.234827 TGTCAATTTGGGATAGCTATGAATATG 57.765 33.333 11.94 2.02 0.00 1.78
1757 1779 9.236006 GTCAATTTGGGATAGCTATGAATATGT 57.764 33.333 11.94 0.00 0.00 2.29
1758 1780 9.453572 TCAATTTGGGATAGCTATGAATATGTC 57.546 33.333 11.94 0.00 0.00 3.06
1759 1781 9.458727 CAATTTGGGATAGCTATGAATATGTCT 57.541 33.333 11.94 0.00 0.00 3.41
1760 1782 9.458727 AATTTGGGATAGCTATGAATATGTCTG 57.541 33.333 11.94 0.00 0.00 3.51
1761 1783 7.797121 TTGGGATAGCTATGAATATGTCTGA 57.203 36.000 11.94 0.00 0.00 3.27
1762 1784 7.415592 TGGGATAGCTATGAATATGTCTGAG 57.584 40.000 11.94 0.00 0.00 3.35
1763 1785 7.184862 TGGGATAGCTATGAATATGTCTGAGA 58.815 38.462 11.94 0.00 0.00 3.27
1764 1786 7.341512 TGGGATAGCTATGAATATGTCTGAGAG 59.658 40.741 11.94 0.00 0.00 3.20
1765 1787 7.341769 GGGATAGCTATGAATATGTCTGAGAGT 59.658 40.741 11.94 0.00 0.00 3.24
1770 1792 8.649591 AGCTATGAATATGTCTGAGAGTTTGAT 58.350 33.333 0.00 0.00 0.00 2.57
1780 1802 5.855395 GTCTGAGAGTTTGATGTGCAATTTC 59.145 40.000 0.00 0.00 36.15 2.17
1785 1807 5.987347 AGAGTTTGATGTGCAATTTCCTTTG 59.013 36.000 0.00 0.00 36.15 2.77
1793 1815 4.037446 TGTGCAATTTCCTTTGTACAGACC 59.963 41.667 4.36 0.00 44.00 3.85
1845 1867 3.025322 TGTTGTCAAGTTCCCACCATT 57.975 42.857 0.00 0.00 0.00 3.16
1901 1923 3.394606 ACAGGTATGTTGTTCAGGAGGTT 59.605 43.478 0.00 0.00 35.63 3.50
1969 1991 6.543735 AGAGAGCATTTAAAGGTTGGTACTT 58.456 36.000 1.37 0.00 0.00 2.24
2080 2103 7.176165 CCATTGTCTATTGCATCCTGTAATGAT 59.824 37.037 10.77 0.00 33.71 2.45
2084 2107 7.940688 TGTCTATTGCATCCTGTAATGATGAAT 59.059 33.333 4.52 4.54 40.85 2.57
2086 2109 8.158789 TCTATTGCATCCTGTAATGATGAATCA 58.841 33.333 4.52 0.00 40.85 2.57
2141 2164 9.678941 CAATGCTAGATGATTTACTCGTTACTA 57.321 33.333 0.00 0.00 0.00 1.82
2146 2169 7.274603 AGATGATTTACTCGTTACTACCTCC 57.725 40.000 0.00 0.00 0.00 4.30
2149 2172 5.415701 TGATTTACTCGTTACTACCTCCGTT 59.584 40.000 0.00 0.00 0.00 4.44
2150 2173 4.685169 TTACTCGTTACTACCTCCGTTG 57.315 45.455 0.00 0.00 0.00 4.10
2152 2175 1.471684 CTCGTTACTACCTCCGTTGCT 59.528 52.381 0.00 0.00 0.00 3.91
2153 2176 1.888512 TCGTTACTACCTCCGTTGCTT 59.111 47.619 0.00 0.00 0.00 3.91
2154 2177 3.081061 TCGTTACTACCTCCGTTGCTTA 58.919 45.455 0.00 0.00 0.00 3.09
2155 2178 3.505680 TCGTTACTACCTCCGTTGCTTAA 59.494 43.478 0.00 0.00 0.00 1.85
2156 2179 4.158394 TCGTTACTACCTCCGTTGCTTAAT 59.842 41.667 0.00 0.00 0.00 1.40
2157 2180 5.356751 TCGTTACTACCTCCGTTGCTTAATA 59.643 40.000 0.00 0.00 0.00 0.98
2158 2181 6.039717 TCGTTACTACCTCCGTTGCTTAATAT 59.960 38.462 0.00 0.00 0.00 1.28
2159 2182 7.228507 TCGTTACTACCTCCGTTGCTTAATATA 59.771 37.037 0.00 0.00 0.00 0.86
2161 2184 9.189723 GTTACTACCTCCGTTGCTTAATATAAG 57.810 37.037 0.00 0.00 0.00 1.73
2162 2185 7.592885 ACTACCTCCGTTGCTTAATATAAGA 57.407 36.000 1.42 0.00 0.00 2.10
2163 2186 7.432059 ACTACCTCCGTTGCTTAATATAAGAC 58.568 38.462 1.42 0.00 0.00 3.01
2164 2187 5.287226 ACCTCCGTTGCTTAATATAAGACG 58.713 41.667 1.42 3.55 0.00 4.18
2165 2188 5.163478 ACCTCCGTTGCTTAATATAAGACGT 60.163 40.000 0.00 0.00 0.00 4.34
2166 2189 5.751990 CCTCCGTTGCTTAATATAAGACGTT 59.248 40.000 0.00 0.00 0.00 3.99
2167 2190 6.257193 CCTCCGTTGCTTAATATAAGACGTTT 59.743 38.462 0.00 0.00 0.00 3.60
2168 2191 7.201582 CCTCCGTTGCTTAATATAAGACGTTTT 60.202 37.037 0.00 0.00 0.00 2.43
2171 2194 7.253190 CCGTTGCTTAATATAAGACGTTTTTGC 60.253 37.037 0.00 0.00 0.00 3.68
2172 2195 7.269511 CGTTGCTTAATATAAGACGTTTTTGCA 59.730 33.333 0.00 0.00 0.00 4.08
2173 2196 8.575454 GTTGCTTAATATAAGACGTTTTTGCAG 58.425 33.333 0.00 0.00 0.00 4.41
2175 2198 8.293867 TGCTTAATATAAGACGTTTTTGCAGTT 58.706 29.630 0.00 0.00 0.00 3.16
2176 2199 8.786028 GCTTAATATAAGACGTTTTTGCAGTTC 58.214 33.333 0.00 0.00 0.00 3.01
2281 2326 3.379057 TGATGCTATGCAAAGTGACCATG 59.621 43.478 0.00 0.00 43.62 3.66
2326 2371 9.943163 TGCTTGCTTTATTTAAAAACAAATTCC 57.057 25.926 0.00 0.00 30.84 3.01
2868 2913 9.981114 AGGAAATGGTAGTGAAATTTTTAACTG 57.019 29.630 10.65 0.00 33.86 3.16
2931 2976 2.620627 GCATACTGCACCCCTAAACCTT 60.621 50.000 0.00 0.00 44.26 3.50
2934 2979 1.228737 TGCACCCCTAAACCTTGCC 60.229 57.895 0.00 0.00 31.94 4.52
3126 3171 9.891828 TTAATTGTTACTGCAGTTCTGTTAATG 57.108 29.630 27.06 0.00 0.00 1.90
3156 3201 6.717289 TGTGCTGTGTCCCTAGTTTTATATT 58.283 36.000 0.00 0.00 0.00 1.28
3352 3397 2.474410 AAGCCCTAAAAGGTCTGTCG 57.526 50.000 0.00 0.00 31.93 4.35
3360 3405 4.755123 CCTAAAAGGTCTGTCGTGTTTCAT 59.245 41.667 0.00 0.00 0.00 2.57
3372 3417 5.818336 TGTCGTGTTTCATTTCCAACTTCTA 59.182 36.000 0.00 0.00 0.00 2.10
3431 3477 9.829507 TTTCATTTCCTGTTTACATGTTTTCAT 57.170 25.926 2.30 0.00 41.78 2.57
3433 3479 9.829507 TCATTTCCTGTTTACATGTTTTCATTT 57.170 25.926 2.30 0.00 38.64 2.32
3737 3787 2.710377 TGTGTCACACCATATGGAAGC 58.290 47.619 28.77 12.87 38.94 3.86
3753 3803 4.009675 TGGAAGCGACATCTGCTATTTTT 58.990 39.130 0.00 0.00 43.14 1.94
3762 3812 4.832266 ACATCTGCTATTTTTGGTGGTTCA 59.168 37.500 0.00 0.00 0.00 3.18
3793 3843 4.370364 ACGCACTTTTGTTCTTCACAAT 57.630 36.364 0.00 0.00 45.17 2.71
3869 3919 7.381139 GGTTTCGCTTTGATTTGACTTTGAATA 59.619 33.333 0.00 0.00 0.00 1.75
4105 4155 5.214417 TGATTTGAAGCATGAAGTTTGTCG 58.786 37.500 0.00 0.00 0.00 4.35
4198 4250 7.833786 TCATATGTTCTTTGTAACGTAGGAGT 58.166 34.615 1.90 0.00 36.97 3.85
4232 4284 9.388506 ACTTTTCATGTTCTATCTCCACTAATG 57.611 33.333 0.00 0.00 0.00 1.90
4260 4312 8.152246 CACATAGTACTAGCTCTACCTCTTAGT 58.848 40.741 8.85 0.00 0.00 2.24
4381 4435 3.231734 CAAGATGCGACTTGGGTCA 57.768 52.632 12.79 0.00 42.17 4.02
4412 4466 7.123247 CCATTTTTCATCTGGAAGGTACATCTT 59.877 37.037 0.00 0.00 36.72 2.40
4425 4479 5.296813 GGTACATCTTGTGCACCTTTTAG 57.703 43.478 15.69 4.17 40.55 1.85
4480 4534 0.179070 TTGTTGGTCTAGCGTGTGCA 60.179 50.000 0.00 0.00 46.23 4.57
4496 4550 5.447954 GCGTGTGCATATTTGTATTGTACCA 60.448 40.000 0.00 0.00 42.15 3.25
4500 4554 9.663904 GTGTGCATATTTGTATTGTACCAATAG 57.336 33.333 0.00 0.00 32.13 1.73
4555 4659 4.402793 GGACCTAGCTATGTCTTCTCACAA 59.597 45.833 23.18 0.00 0.00 3.33
4574 4678 3.128589 ACAATACGATTTGATGGCACCAC 59.871 43.478 8.66 0.00 0.00 4.16
4579 4683 2.354510 CGATTTGATGGCACCACGTAAT 59.645 45.455 0.00 0.00 0.00 1.89
4591 4695 5.048852 GGCACCACGTAATAAGTAAAAACCA 60.049 40.000 0.00 0.00 0.00 3.67
4659 4763 9.713713 AGAGAGACAAGTTAATAGAAACTTTCC 57.286 33.333 0.00 0.00 45.20 3.13
4699 4810 8.190784 GGAATACAATCCTACAAATTGAACCAG 58.809 37.037 0.00 0.00 37.51 4.00
4731 4842 5.768164 TGAAAAACTCCTTACAATCCTCCAC 59.232 40.000 0.00 0.00 0.00 4.02
4866 4977 6.228258 CACTAGCCTAGTTGGTACTCAAAAA 58.772 40.000 0.46 0.00 36.76 1.94
4893 5004 0.738762 CTGACTCGTCTGCACCCATG 60.739 60.000 0.00 0.00 0.00 3.66
5019 5130 0.743701 CGCTGCAAGAAGATGCTCCT 60.744 55.000 0.00 0.00 46.54 3.69
5180 5291 0.318762 GGAGTCGCCCACCTATGATC 59.681 60.000 0.00 0.00 0.00 2.92
5204 5315 4.978580 GTCTTGATTTTGTTCTGCCTTGTC 59.021 41.667 0.00 0.00 0.00 3.18
5290 5401 7.604657 ATCACTACCTCCTTTCTGGTTATAG 57.395 40.000 0.00 0.00 37.74 1.31
5408 5522 7.040062 ACTGTTCTGATATGTGCTAGAGATACC 60.040 40.741 0.00 0.00 0.00 2.73
5550 5860 3.545366 AGAAAGGAGGGAGTAAATCGC 57.455 47.619 0.00 0.00 41.11 4.58
5614 5930 9.859427 AACAACATCAATGTATTCCATTTACAG 57.141 29.630 0.00 0.00 41.93 2.74
5615 5931 8.469200 ACAACATCAATGTATTCCATTTACAGG 58.531 33.333 0.00 0.00 41.93 4.00
5616 5932 8.469200 CAACATCAATGTATTCCATTTACAGGT 58.531 33.333 0.00 0.00 41.93 4.00
5617 5933 9.693739 AACATCAATGTATTCCATTTACAGGTA 57.306 29.630 0.00 0.00 41.93 3.08
5670 6221 4.493618 AGGGCCTGTCTATACACATGTAT 58.506 43.478 4.50 9.40 43.15 2.29
5671 6222 4.907875 AGGGCCTGTCTATACACATGTATT 59.092 41.667 4.50 0.00 41.18 1.89
5790 6341 7.506114 AGGATAATGATAAGCCTTTACGTTCA 58.494 34.615 0.00 0.00 0.00 3.18
5796 6347 8.687824 ATGATAAGCCTTTACGTTCAAAAATG 57.312 30.769 0.00 0.00 0.00 2.32
5948 6501 7.918076 TCTGACCCAGAGTGTTTATTAGAAAT 58.082 34.615 0.00 0.00 35.39 2.17
5950 6503 8.561738 TGACCCAGAGTGTTTATTAGAAATTC 57.438 34.615 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.728373 CTGGTGGGTAGTGGGGCC 61.728 72.222 0.00 0.00 0.00 5.80
2 3 3.728373 CCTGGTGGGTAGTGGGGC 61.728 72.222 0.00 0.00 0.00 5.80
39 40 3.760035 ACTAGACACCAGGGCGCG 61.760 66.667 0.00 0.00 0.00 6.86
40 41 2.125512 CACTAGACACCAGGGCGC 60.126 66.667 0.00 0.00 0.00 6.53
41 42 2.125512 GCACTAGACACCAGGGCG 60.126 66.667 0.00 0.00 31.69 6.13
42 43 2.269241 GGCACTAGACACCAGGGC 59.731 66.667 0.00 0.00 41.93 5.19
43 44 2.670148 GGGGCACTAGACACCAGGG 61.670 68.421 0.00 0.00 0.00 4.45
44 45 2.990479 GGGGCACTAGACACCAGG 59.010 66.667 0.00 0.00 0.00 4.45
68 69 4.459089 GAGCACACGGGAGGAGGC 62.459 72.222 0.00 0.00 0.00 4.70
69 70 3.775654 GGAGCACACGGGAGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
70 71 2.111999 TTTGGAGCACACGGGAGGAG 62.112 60.000 0.00 0.00 0.00 3.69
71 72 1.701031 TTTTGGAGCACACGGGAGGA 61.701 55.000 0.00 0.00 0.00 3.71
72 73 1.228124 TTTTGGAGCACACGGGAGG 60.228 57.895 0.00 0.00 0.00 4.30
73 74 2.247790 CTTTTGGAGCACACGGGAG 58.752 57.895 0.00 0.00 0.00 4.30
74 75 4.473643 CTTTTGGAGCACACGGGA 57.526 55.556 0.00 0.00 0.00 5.14
83 84 1.202927 TCACCCTGGAAGCTTTTGGAG 60.203 52.381 0.00 0.00 0.00 3.86
84 85 0.850100 TCACCCTGGAAGCTTTTGGA 59.150 50.000 0.00 0.00 0.00 3.53
85 86 1.928868 ATCACCCTGGAAGCTTTTGG 58.071 50.000 0.00 3.34 0.00 3.28
86 87 6.038714 GTCTTATATCACCCTGGAAGCTTTTG 59.961 42.308 0.00 0.00 0.00 2.44
87 88 6.122964 GTCTTATATCACCCTGGAAGCTTTT 58.877 40.000 0.00 0.00 0.00 2.27
88 89 5.398012 GGTCTTATATCACCCTGGAAGCTTT 60.398 44.000 0.00 0.00 0.00 3.51
89 90 4.103311 GGTCTTATATCACCCTGGAAGCTT 59.897 45.833 0.00 0.00 0.00 3.74
90 91 3.648545 GGTCTTATATCACCCTGGAAGCT 59.351 47.826 0.00 0.00 0.00 3.74
91 92 4.009370 GGTCTTATATCACCCTGGAAGC 57.991 50.000 0.00 0.00 0.00 3.86
99 100 3.648545 AGCTTCCAGGGTCTTATATCACC 59.351 47.826 0.00 0.00 0.00 4.02
100 101 4.559704 CGAGCTTCCAGGGTCTTATATCAC 60.560 50.000 0.00 0.00 0.00 3.06
101 102 3.574396 CGAGCTTCCAGGGTCTTATATCA 59.426 47.826 0.00 0.00 0.00 2.15
102 103 3.056465 CCGAGCTTCCAGGGTCTTATATC 60.056 52.174 0.00 0.00 0.00 1.63
103 104 2.900546 CCGAGCTTCCAGGGTCTTATAT 59.099 50.000 0.00 0.00 0.00 0.86
104 105 2.317040 CCGAGCTTCCAGGGTCTTATA 58.683 52.381 0.00 0.00 0.00 0.98
105 106 1.123928 CCGAGCTTCCAGGGTCTTAT 58.876 55.000 0.00 0.00 0.00 1.73
106 107 0.252103 ACCGAGCTTCCAGGGTCTTA 60.252 55.000 0.00 0.00 0.00 2.10
107 108 1.536662 ACCGAGCTTCCAGGGTCTT 60.537 57.895 0.00 0.00 0.00 3.01
108 109 1.985116 GACCGAGCTTCCAGGGTCT 60.985 63.158 12.01 0.00 44.35 3.85
109 110 2.579738 GACCGAGCTTCCAGGGTC 59.420 66.667 0.00 0.00 41.84 4.46
110 111 2.120718 AGACCGAGCTTCCAGGGT 59.879 61.111 0.00 0.00 34.94 4.34
111 112 2.581354 CAGACCGAGCTTCCAGGG 59.419 66.667 0.00 0.00 0.00 4.45
112 113 2.286523 ACCAGACCGAGCTTCCAGG 61.287 63.158 0.00 0.00 0.00 4.45
113 114 1.079543 CACCAGACCGAGCTTCCAG 60.080 63.158 0.00 0.00 0.00 3.86
114 115 1.533033 TCACCAGACCGAGCTTCCA 60.533 57.895 0.00 0.00 0.00 3.53
115 116 1.079750 GTCACCAGACCGAGCTTCC 60.080 63.158 0.00 0.00 38.89 3.46
116 117 1.444553 CGTCACCAGACCGAGCTTC 60.445 63.158 0.00 0.00 41.87 3.86
117 118 0.892358 TACGTCACCAGACCGAGCTT 60.892 55.000 0.00 0.00 41.87 3.74
118 119 0.680280 ATACGTCACCAGACCGAGCT 60.680 55.000 0.00 0.00 41.87 4.09
119 120 0.248539 GATACGTCACCAGACCGAGC 60.249 60.000 0.00 0.00 41.87 5.03
120 121 1.064208 CTGATACGTCACCAGACCGAG 59.936 57.143 0.00 0.00 41.87 4.63
121 122 1.092348 CTGATACGTCACCAGACCGA 58.908 55.000 0.00 0.00 41.87 4.69
122 123 0.525668 GCTGATACGTCACCAGACCG 60.526 60.000 13.70 0.00 41.87 4.79
123 124 0.818296 AGCTGATACGTCACCAGACC 59.182 55.000 13.70 0.58 41.87 3.85
124 125 1.472878 TCAGCTGATACGTCACCAGAC 59.527 52.381 13.74 6.89 41.46 3.51
125 126 1.834188 TCAGCTGATACGTCACCAGA 58.166 50.000 13.74 0.00 0.00 3.86
126 127 2.099756 TCATCAGCTGATACGTCACCAG 59.900 50.000 28.27 13.02 32.63 4.00
127 128 2.099405 TCATCAGCTGATACGTCACCA 58.901 47.619 28.27 0.00 32.63 4.17
128 129 2.860735 GTTCATCAGCTGATACGTCACC 59.139 50.000 28.27 8.99 32.72 4.02
129 130 3.511699 TGTTCATCAGCTGATACGTCAC 58.488 45.455 28.27 18.80 32.72 3.67
130 131 3.866883 TGTTCATCAGCTGATACGTCA 57.133 42.857 28.27 20.06 32.72 4.35
131 132 5.725110 ATTTGTTCATCAGCTGATACGTC 57.275 39.130 28.27 18.00 32.72 4.34
132 133 6.144563 CGATATTTGTTCATCAGCTGATACGT 59.855 38.462 28.27 15.35 32.72 3.57
133 134 6.363357 TCGATATTTGTTCATCAGCTGATACG 59.637 38.462 28.27 17.31 32.72 3.06
134 135 7.643528 TCGATATTTGTTCATCAGCTGATAC 57.356 36.000 28.27 22.95 32.72 2.24
136 137 8.880750 CATATCGATATTTGTTCATCAGCTGAT 58.119 33.333 23.75 23.75 32.72 2.90
137 138 7.874528 ACATATCGATATTTGTTCATCAGCTGA 59.125 33.333 20.79 20.79 0.00 4.26
138 139 8.026341 ACATATCGATATTTGTTCATCAGCTG 57.974 34.615 15.33 7.63 0.00 4.24
139 140 8.501580 CAACATATCGATATTTGTTCATCAGCT 58.498 33.333 17.50 0.00 35.77 4.24
140 141 7.747799 CCAACATATCGATATTTGTTCATCAGC 59.252 37.037 23.56 0.00 35.77 4.26
141 142 8.992073 TCCAACATATCGATATTTGTTCATCAG 58.008 33.333 23.56 13.92 35.77 2.90
142 143 8.900983 TCCAACATATCGATATTTGTTCATCA 57.099 30.769 23.56 9.75 35.77 3.07
143 144 9.208022 TCTCCAACATATCGATATTTGTTCATC 57.792 33.333 23.56 0.00 35.77 2.92
144 145 8.993121 GTCTCCAACATATCGATATTTGTTCAT 58.007 33.333 23.56 7.39 35.77 2.57
145 146 7.169140 CGTCTCCAACATATCGATATTTGTTCA 59.831 37.037 23.56 14.05 35.77 3.18
146 147 7.169308 ACGTCTCCAACATATCGATATTTGTTC 59.831 37.037 23.56 13.44 35.77 3.18
147 148 6.984474 ACGTCTCCAACATATCGATATTTGTT 59.016 34.615 23.56 20.25 37.64 2.83
148 149 6.513180 ACGTCTCCAACATATCGATATTTGT 58.487 36.000 23.56 17.00 0.00 2.83
149 150 8.689251 ATACGTCTCCAACATATCGATATTTG 57.311 34.615 15.33 19.15 0.00 2.32
150 151 8.520351 TGATACGTCTCCAACATATCGATATTT 58.480 33.333 15.33 6.72 36.13 1.40
151 152 8.051901 TGATACGTCTCCAACATATCGATATT 57.948 34.615 15.33 0.13 36.13 1.28
152 153 7.625828 TGATACGTCTCCAACATATCGATAT 57.374 36.000 12.25 12.25 36.13 1.63
153 154 6.403309 GCTGATACGTCTCCAACATATCGATA 60.403 42.308 7.75 7.75 36.13 2.92
154 155 5.620205 GCTGATACGTCTCCAACATATCGAT 60.620 44.000 2.16 2.16 36.13 3.59
155 156 4.320275 GCTGATACGTCTCCAACATATCGA 60.320 45.833 0.00 0.00 36.13 3.59
156 157 3.914966 GCTGATACGTCTCCAACATATCG 59.085 47.826 0.00 0.00 36.13 2.92
157 158 4.920340 CAGCTGATACGTCTCCAACATATC 59.080 45.833 8.42 0.00 34.38 1.63
158 159 4.797604 GCAGCTGATACGTCTCCAACATAT 60.798 45.833 20.43 0.00 0.00 1.78
159 160 3.490933 GCAGCTGATACGTCTCCAACATA 60.491 47.826 20.43 0.00 0.00 2.29
160 161 2.739932 GCAGCTGATACGTCTCCAACAT 60.740 50.000 20.43 0.00 0.00 2.71
161 162 1.404181 GCAGCTGATACGTCTCCAACA 60.404 52.381 20.43 0.00 0.00 3.33
162 163 1.281899 GCAGCTGATACGTCTCCAAC 58.718 55.000 20.43 0.00 0.00 3.77
163 164 0.175760 GGCAGCTGATACGTCTCCAA 59.824 55.000 20.43 0.00 0.00 3.53
164 165 1.816537 GGCAGCTGATACGTCTCCA 59.183 57.895 20.43 0.00 0.00 3.86
165 166 1.299468 CGGCAGCTGATACGTCTCC 60.299 63.158 20.43 5.19 0.00 3.71
166 167 0.317436 CTCGGCAGCTGATACGTCTC 60.317 60.000 20.43 0.00 0.00 3.36
167 168 0.748367 TCTCGGCAGCTGATACGTCT 60.748 55.000 20.43 0.00 0.00 4.18
168 169 0.317436 CTCTCGGCAGCTGATACGTC 60.317 60.000 20.43 0.00 0.00 4.34
169 170 1.729470 CCTCTCGGCAGCTGATACGT 61.729 60.000 20.43 0.00 0.00 3.57
170 171 1.007964 CCTCTCGGCAGCTGATACG 60.008 63.158 20.43 18.04 0.00 3.06
171 172 0.031449 GACCTCTCGGCAGCTGATAC 59.969 60.000 20.43 5.61 0.00 2.24
172 173 0.395724 TGACCTCTCGGCAGCTGATA 60.396 55.000 20.43 0.00 0.00 2.15
173 174 1.683707 TGACCTCTCGGCAGCTGAT 60.684 57.895 20.43 0.00 0.00 2.90
174 175 2.283173 TGACCTCTCGGCAGCTGA 60.283 61.111 20.43 3.23 0.00 4.26
175 176 2.125753 GTGACCTCTCGGCAGCTG 60.126 66.667 10.11 10.11 0.00 4.24
176 177 3.753434 CGTGACCTCTCGGCAGCT 61.753 66.667 0.00 0.00 0.00 4.24
177 178 3.575351 AACGTGACCTCTCGGCAGC 62.575 63.158 0.00 0.00 37.19 5.25
178 179 1.734477 CAACGTGACCTCTCGGCAG 60.734 63.158 0.00 0.00 37.19 4.85
179 180 2.338620 CAACGTGACCTCTCGGCA 59.661 61.111 0.00 0.00 37.19 5.69
180 181 2.432628 CCAACGTGACCTCTCGGC 60.433 66.667 0.00 0.00 37.19 5.54
181 182 1.080705 GACCAACGTGACCTCTCGG 60.081 63.158 0.00 0.00 37.19 4.63
182 183 0.387367 CTGACCAACGTGACCTCTCG 60.387 60.000 0.00 0.00 38.62 4.04
183 184 0.667792 GCTGACCAACGTGACCTCTC 60.668 60.000 0.00 0.00 0.00 3.20
184 185 1.367840 GCTGACCAACGTGACCTCT 59.632 57.895 0.00 0.00 0.00 3.69
185 186 2.022129 CGCTGACCAACGTGACCTC 61.022 63.158 0.00 0.00 0.00 3.85
186 187 2.029073 CGCTGACCAACGTGACCT 59.971 61.111 0.00 0.00 0.00 3.85
187 188 3.712881 GCGCTGACCAACGTGACC 61.713 66.667 0.00 0.00 0.00 4.02
188 189 3.712881 GGCGCTGACCAACGTGAC 61.713 66.667 7.64 0.00 0.00 3.67
204 205 3.474570 CAGAGGGAGGGAAGGCGG 61.475 72.222 0.00 0.00 0.00 6.13
205 206 3.474570 CCAGAGGGAGGGAAGGCG 61.475 72.222 0.00 0.00 35.59 5.52
206 207 2.285743 ACCAGAGGGAGGGAAGGC 60.286 66.667 0.00 0.00 38.05 4.35
207 208 1.081092 TGACCAGAGGGAGGGAAGG 59.919 63.158 0.00 0.00 38.05 3.46
208 209 0.545309 TGTGACCAGAGGGAGGGAAG 60.545 60.000 0.00 0.00 38.05 3.46
209 210 0.119155 ATGTGACCAGAGGGAGGGAA 59.881 55.000 0.00 0.00 38.05 3.97
210 211 0.325671 GATGTGACCAGAGGGAGGGA 60.326 60.000 0.00 0.00 38.05 4.20
211 212 1.680522 CGATGTGACCAGAGGGAGGG 61.681 65.000 0.00 0.00 38.05 4.30
212 213 1.819229 CGATGTGACCAGAGGGAGG 59.181 63.158 0.00 0.00 38.05 4.30
213 214 1.142748 GCGATGTGACCAGAGGGAG 59.857 63.158 0.00 0.00 38.05 4.30
214 215 2.710902 CGCGATGTGACCAGAGGGA 61.711 63.158 0.00 0.00 38.05 4.20
215 216 2.202797 CGCGATGTGACCAGAGGG 60.203 66.667 0.00 0.00 41.29 4.30
216 217 1.517257 GTCGCGATGTGACCAGAGG 60.517 63.158 14.06 0.00 37.12 3.69
217 218 0.179127 ATGTCGCGATGTGACCAGAG 60.179 55.000 14.06 0.00 41.72 3.35
218 219 0.179137 GATGTCGCGATGTGACCAGA 60.179 55.000 14.06 0.00 41.72 3.86
219 220 0.458370 TGATGTCGCGATGTGACCAG 60.458 55.000 14.06 0.00 41.72 4.00
220 221 0.458370 CTGATGTCGCGATGTGACCA 60.458 55.000 14.06 4.35 41.72 4.02
221 222 0.458543 ACTGATGTCGCGATGTGACC 60.459 55.000 14.06 0.00 41.72 4.02
222 223 0.642291 CACTGATGTCGCGATGTGAC 59.358 55.000 14.06 0.00 42.60 3.67
223 224 1.078201 GCACTGATGTCGCGATGTGA 61.078 55.000 14.06 0.00 0.00 3.58
224 225 1.346197 GCACTGATGTCGCGATGTG 59.654 57.895 14.06 16.71 0.00 3.21
225 226 1.811266 GGCACTGATGTCGCGATGT 60.811 57.895 14.06 3.48 0.00 3.06
226 227 3.009140 GGCACTGATGTCGCGATG 58.991 61.111 14.06 6.40 0.00 3.84
232 233 1.153549 GGAGGTCGGCACTGATGTC 60.154 63.158 0.00 0.00 0.00 3.06
233 234 1.913262 TGGAGGTCGGCACTGATGT 60.913 57.895 0.00 0.00 0.00 3.06
234 235 1.448540 GTGGAGGTCGGCACTGATG 60.449 63.158 0.00 0.00 0.00 3.07
235 236 2.982130 GTGGAGGTCGGCACTGAT 59.018 61.111 0.00 0.00 0.00 2.90
236 237 3.680786 CGTGGAGGTCGGCACTGA 61.681 66.667 0.00 0.00 0.00 3.41
237 238 3.991051 ACGTGGAGGTCGGCACTG 61.991 66.667 0.00 0.00 0.00 3.66
238 239 3.991051 CACGTGGAGGTCGGCACT 61.991 66.667 7.95 0.00 0.00 4.40
242 243 3.374402 AGAGCACGTGGAGGTCGG 61.374 66.667 18.88 0.00 38.46 4.79
243 244 2.126307 CAGAGCACGTGGAGGTCG 60.126 66.667 18.88 0.00 38.46 4.79
244 245 2.262915 CCAGAGCACGTGGAGGTC 59.737 66.667 18.88 6.57 37.23 3.85
245 246 3.314331 CCCAGAGCACGTGGAGGT 61.314 66.667 18.88 0.00 37.23 3.85
246 247 4.767255 GCCCAGAGCACGTGGAGG 62.767 72.222 18.88 5.35 42.97 4.30
247 248 4.767255 GGCCCAGAGCACGTGGAG 62.767 72.222 18.88 0.00 46.50 3.86
255 256 4.802051 TTCATGCCGGCCCAGAGC 62.802 66.667 26.77 0.00 42.60 4.09
256 257 2.191513 CATTCATGCCGGCCCAGAG 61.192 63.158 26.77 9.23 0.00 3.35
257 258 2.124193 CATTCATGCCGGCCCAGA 60.124 61.111 26.77 16.42 0.00 3.86
267 268 1.267532 GCTTACCGTGTCGCATTCATG 60.268 52.381 0.00 0.00 0.00 3.07
268 269 1.006832 GCTTACCGTGTCGCATTCAT 58.993 50.000 0.00 0.00 0.00 2.57
269 270 1.348538 CGCTTACCGTGTCGCATTCA 61.349 55.000 0.00 0.00 0.00 2.57
270 271 1.343821 CGCTTACCGTGTCGCATTC 59.656 57.895 0.00 0.00 0.00 2.67
271 272 2.098233 CCGCTTACCGTGTCGCATT 61.098 57.895 0.00 0.00 34.38 3.56
272 273 2.508439 CCGCTTACCGTGTCGCAT 60.508 61.111 0.00 0.00 34.38 4.73
273 274 3.980989 ACCGCTTACCGTGTCGCA 61.981 61.111 0.00 0.00 34.38 5.10
274 275 3.475774 CACCGCTTACCGTGTCGC 61.476 66.667 0.00 0.00 34.38 5.19
275 276 2.049802 ACACCGCTTACCGTGTCG 60.050 61.111 0.00 0.00 34.38 4.35
276 277 1.300388 ACACACCGCTTACCGTGTC 60.300 57.895 0.00 0.00 38.13 3.67
277 278 1.593209 CACACACCGCTTACCGTGT 60.593 57.895 0.00 0.00 43.12 4.49
278 279 2.950172 GCACACACCGCTTACCGTG 61.950 63.158 0.00 0.00 34.38 4.94
279 280 2.663852 GCACACACCGCTTACCGT 60.664 61.111 0.00 0.00 34.38 4.83
280 281 1.966493 GATGCACACACCGCTTACCG 61.966 60.000 0.00 0.00 0.00 4.02
281 282 0.953471 TGATGCACACACCGCTTACC 60.953 55.000 0.00 0.00 0.00 2.85
282 283 0.443869 CTGATGCACACACCGCTTAC 59.556 55.000 0.00 0.00 0.00 2.34
283 284 0.320050 TCTGATGCACACACCGCTTA 59.680 50.000 0.00 0.00 0.00 3.09
284 285 0.534877 TTCTGATGCACACACCGCTT 60.535 50.000 0.00 0.00 0.00 4.68
285 286 0.952497 CTTCTGATGCACACACCGCT 60.952 55.000 0.00 0.00 0.00 5.52
286 287 1.499056 CTTCTGATGCACACACCGC 59.501 57.895 0.00 0.00 0.00 5.68
287 288 0.320683 TCCTTCTGATGCACACACCG 60.321 55.000 0.00 0.00 0.00 4.94
288 289 1.896220 TTCCTTCTGATGCACACACC 58.104 50.000 0.00 0.00 0.00 4.16
289 290 2.351157 GCTTTCCTTCTGATGCACACAC 60.351 50.000 0.00 0.00 0.00 3.82
290 291 1.881973 GCTTTCCTTCTGATGCACACA 59.118 47.619 0.00 0.00 0.00 3.72
321 322 2.229784 GGCTCATCAAAAACCCTCACTG 59.770 50.000 0.00 0.00 0.00 3.66
322 323 2.158475 TGGCTCATCAAAAACCCTCACT 60.158 45.455 0.00 0.00 0.00 3.41
336 337 3.790437 CTGACCGCCCTGGCTCAT 61.790 66.667 6.60 0.00 43.94 2.90
373 374 3.431725 GGCTTTGCGGGAGTTCGG 61.432 66.667 0.00 0.00 0.00 4.30
394 395 0.471211 AACCGGAGACAAGTGAGGGA 60.471 55.000 9.46 0.00 0.00 4.20
398 399 0.878523 CGCAAACCGGAGACAAGTGA 60.879 55.000 9.46 0.00 0.00 3.41
399 400 1.569493 CGCAAACCGGAGACAAGTG 59.431 57.895 9.46 0.00 0.00 3.16
400 401 4.043168 CGCAAACCGGAGACAAGT 57.957 55.556 9.46 0.00 0.00 3.16
442 446 1.755161 CGAGAATGTATCGGTCCACG 58.245 55.000 0.00 0.00 46.11 4.94
444 448 0.030235 CGCGAGAATGTATCGGTCCA 59.970 55.000 0.00 0.00 40.50 4.02
445 449 0.030369 ACGCGAGAATGTATCGGTCC 59.970 55.000 15.93 0.00 40.50 4.46
471 475 3.338249 CATCTGTCTGAACCACGGAATT 58.662 45.455 0.00 0.00 35.49 2.17
472 476 2.936993 GCATCTGTCTGAACCACGGAAT 60.937 50.000 0.00 0.00 35.49 3.01
482 486 1.877576 AACCGCTCGCATCTGTCTGA 61.878 55.000 0.00 0.00 0.00 3.27
484 488 1.016130 CAAACCGCTCGCATCTGTCT 61.016 55.000 0.00 0.00 0.00 3.41
487 491 2.099062 GCAAACCGCTCGCATCTG 59.901 61.111 0.00 0.00 37.77 2.90
488 492 3.490759 CGCAAACCGCTCGCATCT 61.491 61.111 0.00 0.00 39.08 2.90
529 533 8.895737 ACAACCTCTTTAAATTTCGTTGAGTTA 58.104 29.630 17.45 0.00 34.62 2.24
548 552 6.235231 TCCCACAATAGATCTAACAACCTC 57.765 41.667 6.52 0.00 0.00 3.85
622 627 2.172717 ACTAAGTGTTCACCAAGTGCCT 59.827 45.455 6.89 0.00 32.98 4.75
630 635 4.694339 AGTTGAGTGACTAAGTGTTCACC 58.306 43.478 0.00 0.00 33.95 4.02
632 637 7.050970 ACATAGTTGAGTGACTAAGTGTTCA 57.949 36.000 0.00 0.00 34.01 3.18
671 676 7.699812 GTGCATCCAAGTCTTTAGATTGATTTC 59.300 37.037 0.00 0.00 0.00 2.17
681 686 6.003326 TCATGAAAGTGCATCCAAGTCTTTA 58.997 36.000 0.00 0.00 0.00 1.85
695 700 4.021719 AGGGCTCAAATGTTCATGAAAGTG 60.022 41.667 10.35 6.19 0.00 3.16
737 742 3.511477 TGCCCAAAATTTAGTGCCCTAA 58.489 40.909 0.00 0.00 0.00 2.69
761 766 4.282195 GCTCAACCCTAGCATACTACTCAT 59.718 45.833 0.00 0.00 39.83 2.90
762 767 3.637229 GCTCAACCCTAGCATACTACTCA 59.363 47.826 0.00 0.00 39.83 3.41
763 768 3.304794 CGCTCAACCCTAGCATACTACTC 60.305 52.174 0.00 0.00 40.08 2.59
764 769 2.623889 CGCTCAACCCTAGCATACTACT 59.376 50.000 0.00 0.00 40.08 2.57
765 770 2.361438 ACGCTCAACCCTAGCATACTAC 59.639 50.000 0.00 0.00 40.08 2.73
766 771 2.621998 GACGCTCAACCCTAGCATACTA 59.378 50.000 0.00 0.00 40.08 1.82
927 933 2.412591 GGAGGGAGATGAGGATTTGGA 58.587 52.381 0.00 0.00 0.00 3.53
982 988 3.798511 CTTCGCCCCTCTTCCCCC 61.799 72.222 0.00 0.00 0.00 5.40
983 989 2.073101 ATCTTCGCCCCTCTTCCCC 61.073 63.158 0.00 0.00 0.00 4.81
984 990 1.147153 CATCTTCGCCCCTCTTCCC 59.853 63.158 0.00 0.00 0.00 3.97
985 991 1.524849 GCATCTTCGCCCCTCTTCC 60.525 63.158 0.00 0.00 0.00 3.46
986 992 0.813210 CAGCATCTTCGCCCCTCTTC 60.813 60.000 0.00 0.00 0.00 2.87
987 993 1.222936 CAGCATCTTCGCCCCTCTT 59.777 57.895 0.00 0.00 0.00 2.85
988 994 1.992277 ACAGCATCTTCGCCCCTCT 60.992 57.895 0.00 0.00 0.00 3.69
989 995 1.817099 CACAGCATCTTCGCCCCTC 60.817 63.158 0.00 0.00 0.00 4.30
990 996 2.270205 CACAGCATCTTCGCCCCT 59.730 61.111 0.00 0.00 0.00 4.79
991 997 2.825836 CCACAGCATCTTCGCCCC 60.826 66.667 0.00 0.00 0.00 5.80
1109 1116 5.209659 GGAGACCCTAGGAGAGTGATTTTA 58.790 45.833 11.48 0.00 0.00 1.52
1110 1117 4.034410 GGAGACCCTAGGAGAGTGATTTT 58.966 47.826 11.48 0.00 0.00 1.82
1112 1119 3.322191 GGAGACCCTAGGAGAGTGATT 57.678 52.381 11.48 0.00 0.00 2.57
1171 1178 1.515521 CTCCGCCACCTGAACCAAAC 61.516 60.000 0.00 0.00 0.00 2.93
1172 1179 1.228124 CTCCGCCACCTGAACCAAA 60.228 57.895 0.00 0.00 0.00 3.28
1299 1307 8.798859 TTCAAAGATTTATCCTGAAGAGAAGG 57.201 34.615 0.00 0.00 36.02 3.46
1371 1379 7.998212 CACGAAAATGTCAGCAGAAAAATAAAC 59.002 33.333 0.00 0.00 0.00 2.01
1375 1383 4.445385 GCACGAAAATGTCAGCAGAAAAAT 59.555 37.500 0.00 0.00 0.00 1.82
1399 1410 1.190833 TGCAACGGGGCCATCAAAAT 61.191 50.000 4.39 0.00 0.00 1.82
1409 1420 1.002134 ATCTTCACCTGCAACGGGG 60.002 57.895 0.00 0.00 33.40 5.73
1410 1421 1.308069 CCATCTTCACCTGCAACGGG 61.308 60.000 0.00 0.00 35.68 5.28
1440 1451 2.492088 ACGACTCACATCGATCTTCCAA 59.508 45.455 0.00 0.00 45.13 3.53
1459 1470 2.335712 GGCTGAAAGAAGGGCCACG 61.336 63.158 6.18 0.00 43.59 4.94
1462 1473 1.000866 ATGGGCTGAAAGAAGGGCC 59.999 57.895 0.00 0.00 44.50 5.80
1463 1474 0.033699 AGATGGGCTGAAAGAAGGGC 60.034 55.000 0.00 0.00 34.07 5.19
1484 1495 8.918202 AATAGTGACAATAACAAGGAAAGACA 57.082 30.769 0.00 0.00 0.00 3.41
1514 1525 3.824151 TCAATGACACATCGCAACATTG 58.176 40.909 0.00 0.00 44.83 2.82
1516 1527 3.752747 TCTTCAATGACACATCGCAACAT 59.247 39.130 0.00 0.00 0.00 2.71
1517 1528 3.137533 TCTTCAATGACACATCGCAACA 58.862 40.909 0.00 0.00 0.00 3.33
1518 1529 3.811722 TCTTCAATGACACATCGCAAC 57.188 42.857 0.00 0.00 0.00 4.17
1519 1530 5.048852 TCAATTCTTCAATGACACATCGCAA 60.049 36.000 0.00 0.00 0.00 4.85
1523 1534 7.137490 TCTGTCAATTCTTCAATGACACATC 57.863 36.000 3.87 0.00 35.88 3.06
1526 1537 7.420800 ACTTTCTGTCAATTCTTCAATGACAC 58.579 34.615 3.87 0.00 35.88 3.67
1535 1546 8.621532 TTGCATACTACTTTCTGTCAATTCTT 57.378 30.769 0.00 0.00 0.00 2.52
1536 1547 8.621532 TTTGCATACTACTTTCTGTCAATTCT 57.378 30.769 0.00 0.00 0.00 2.40
1556 1567 5.986135 ACAACCGCATAACTTTTTATTTGCA 59.014 32.000 0.00 0.00 0.00 4.08
1557 1568 6.144724 TGACAACCGCATAACTTTTTATTTGC 59.855 34.615 0.00 0.00 0.00 3.68
1558 1569 7.381139 AGTGACAACCGCATAACTTTTTATTTG 59.619 33.333 0.00 0.00 0.00 2.32
1559 1570 7.430441 AGTGACAACCGCATAACTTTTTATTT 58.570 30.769 0.00 0.00 0.00 1.40
1560 1571 6.977213 AGTGACAACCGCATAACTTTTTATT 58.023 32.000 0.00 0.00 0.00 1.40
1561 1572 6.569179 AGTGACAACCGCATAACTTTTTAT 57.431 33.333 0.00 0.00 0.00 1.40
1562 1573 6.482641 TGTAGTGACAACCGCATAACTTTTTA 59.517 34.615 0.00 0.00 30.68 1.52
1563 1574 4.911514 AGTGACAACCGCATAACTTTTT 57.088 36.364 0.00 0.00 0.00 1.94
1564 1575 4.817464 TGTAGTGACAACCGCATAACTTTT 59.183 37.500 0.00 0.00 30.68 2.27
1565 1576 4.382291 TGTAGTGACAACCGCATAACTTT 58.618 39.130 0.00 0.00 30.68 2.66
1566 1577 3.997762 TGTAGTGACAACCGCATAACTT 58.002 40.909 0.00 0.00 30.68 2.66
1567 1578 3.671008 TGTAGTGACAACCGCATAACT 57.329 42.857 0.00 0.00 30.68 2.24
1568 1579 3.682858 ACATGTAGTGACAACCGCATAAC 59.317 43.478 0.00 0.00 39.59 1.89
1569 1580 3.932822 ACATGTAGTGACAACCGCATAA 58.067 40.909 0.00 0.00 39.59 1.90
1570 1581 3.603158 ACATGTAGTGACAACCGCATA 57.397 42.857 0.00 0.00 39.59 3.14
1583 1594 3.811497 CCCTGTATGCATGACACATGTAG 59.189 47.826 10.16 0.00 0.00 2.74
1584 1595 3.454082 TCCCTGTATGCATGACACATGTA 59.546 43.478 10.16 8.87 0.00 2.29
1585 1596 2.239402 TCCCTGTATGCATGACACATGT 59.761 45.455 10.16 0.00 0.00 3.21
1592 1603 3.776969 AGAAAGACTCCCTGTATGCATGA 59.223 43.478 10.16 0.00 0.00 3.07
1612 1623 6.096141 TCACCAATAGCACAAACTGAAAAAGA 59.904 34.615 0.00 0.00 0.00 2.52
1614 1625 6.214191 TCACCAATAGCACAAACTGAAAAA 57.786 33.333 0.00 0.00 0.00 1.94
1651 1662 5.327616 TGCTTTGTTTCATATCATGGTGG 57.672 39.130 0.00 0.00 0.00 4.61
1662 1673 5.124645 AGAAATGGCAAATGCTTTGTTTCA 58.875 33.333 17.97 11.05 42.56 2.69
1669 1681 5.186409 ACATACAGAGAAATGGCAAATGCTT 59.814 36.000 5.25 0.00 41.70 3.91
1683 1695 8.722394 CACTAATAAGCTATCGACATACAGAGA 58.278 37.037 0.00 0.00 0.00 3.10
1686 1698 9.119329 GAACACTAATAAGCTATCGACATACAG 57.881 37.037 0.00 0.00 0.00 2.74
1694 1706 5.175856 GCCACAGAACACTAATAAGCTATCG 59.824 44.000 0.00 0.00 0.00 2.92
1704 1726 4.634012 AGGTAATGCCACAGAACACTAA 57.366 40.909 0.00 0.00 40.61 2.24
1705 1727 5.247564 ACTTAGGTAATGCCACAGAACACTA 59.752 40.000 0.00 0.00 40.61 2.74
1706 1728 4.041691 ACTTAGGTAATGCCACAGAACACT 59.958 41.667 0.00 0.00 40.61 3.55
1707 1729 4.324267 ACTTAGGTAATGCCACAGAACAC 58.676 43.478 0.00 0.00 40.61 3.32
1713 1735 4.359434 TGACAACTTAGGTAATGCCACA 57.641 40.909 0.00 0.00 40.61 4.17
1719 1741 9.408648 CTATCCCAAATTGACAACTTAGGTAAT 57.591 33.333 0.00 0.00 0.00 1.89
1723 1745 5.888161 AGCTATCCCAAATTGACAACTTAGG 59.112 40.000 0.00 0.00 0.00 2.69
1725 1747 8.271458 TCATAGCTATCCCAAATTGACAACTTA 58.729 33.333 2.34 0.00 0.00 2.24
1732 1754 9.453572 GACATATTCATAGCTATCCCAAATTGA 57.546 33.333 2.34 0.00 0.00 2.57
1742 1764 9.926158 CAAACTCTCAGACATATTCATAGCTAT 57.074 33.333 0.00 0.00 0.00 2.97
1743 1765 9.136323 TCAAACTCTCAGACATATTCATAGCTA 57.864 33.333 0.00 0.00 0.00 3.32
1744 1766 8.016301 TCAAACTCTCAGACATATTCATAGCT 57.984 34.615 0.00 0.00 0.00 3.32
1745 1767 8.710551 CATCAAACTCTCAGACATATTCATAGC 58.289 37.037 0.00 0.00 0.00 2.97
1746 1768 9.761504 ACATCAAACTCTCAGACATATTCATAG 57.238 33.333 0.00 0.00 0.00 2.23
1747 1769 9.538508 CACATCAAACTCTCAGACATATTCATA 57.461 33.333 0.00 0.00 0.00 2.15
1748 1770 7.012138 GCACATCAAACTCTCAGACATATTCAT 59.988 37.037 0.00 0.00 0.00 2.57
1750 1772 6.314648 TGCACATCAAACTCTCAGACATATTC 59.685 38.462 0.00 0.00 0.00 1.75
1751 1773 6.175471 TGCACATCAAACTCTCAGACATATT 58.825 36.000 0.00 0.00 0.00 1.28
1752 1774 5.737860 TGCACATCAAACTCTCAGACATAT 58.262 37.500 0.00 0.00 0.00 1.78
1753 1775 5.151297 TGCACATCAAACTCTCAGACATA 57.849 39.130 0.00 0.00 0.00 2.29
1755 1777 3.473923 TGCACATCAAACTCTCAGACA 57.526 42.857 0.00 0.00 0.00 3.41
1756 1778 5.368256 AATTGCACATCAAACTCTCAGAC 57.632 39.130 0.00 0.00 38.34 3.51
1757 1779 5.048504 GGAAATTGCACATCAAACTCTCAGA 60.049 40.000 0.00 0.00 38.34 3.27
1758 1780 5.048224 AGGAAATTGCACATCAAACTCTCAG 60.048 40.000 0.00 0.00 38.34 3.35
1759 1781 4.828939 AGGAAATTGCACATCAAACTCTCA 59.171 37.500 0.00 0.00 38.34 3.27
1760 1782 5.382618 AGGAAATTGCACATCAAACTCTC 57.617 39.130 0.00 0.00 38.34 3.20
1761 1783 5.796424 AAGGAAATTGCACATCAAACTCT 57.204 34.783 0.00 0.00 38.34 3.24
1762 1784 5.754890 ACAAAGGAAATTGCACATCAAACTC 59.245 36.000 0.00 0.00 38.34 3.01
1763 1785 5.673514 ACAAAGGAAATTGCACATCAAACT 58.326 33.333 0.00 0.00 38.34 2.66
1764 1786 5.989551 ACAAAGGAAATTGCACATCAAAC 57.010 34.783 0.00 0.00 38.34 2.93
1765 1787 6.577103 TGTACAAAGGAAATTGCACATCAAA 58.423 32.000 0.00 0.00 38.34 2.69
1770 1792 4.037446 GGTCTGTACAAAGGAAATTGCACA 59.963 41.667 0.00 0.00 34.91 4.57
1780 1802 0.389426 CGTCCCGGTCTGTACAAAGG 60.389 60.000 0.00 0.00 0.00 3.11
1785 1807 1.377725 TCCTCGTCCCGGTCTGTAC 60.378 63.158 0.00 0.00 0.00 2.90
1793 1815 1.137086 AGATCAAATGTCCTCGTCCCG 59.863 52.381 0.00 0.00 0.00 5.14
1814 1836 0.035317 TTGACAACATCGCCAGCTCT 59.965 50.000 0.00 0.00 0.00 4.09
1845 1867 0.111446 TCGCTGGGGTTCATTTCCAA 59.889 50.000 0.00 0.00 0.00 3.53
1850 1872 1.304282 AGCATCGCTGGGGTTCATT 59.696 52.632 0.00 0.00 37.57 2.57
1901 1923 5.070981 CCTACTCTTGGCCATCTCTTTGATA 59.929 44.000 6.09 0.00 33.36 2.15
2001 2024 9.965824 ACTTCTTTGTAAGACAACAATATTTGG 57.034 29.630 0.00 0.00 37.90 3.28
2007 2030 6.127479 TGGCAACTTCTTTGTAAGACAACAAT 60.127 34.615 0.00 0.00 37.23 2.71
2026 2049 2.229062 GGGAAGAAAAGCTAGTGGCAAC 59.771 50.000 0.00 0.00 44.79 4.17
2084 2107 9.306777 AGACAACTTCATGCTATATAGAGATGA 57.693 33.333 14.16 15.15 0.00 2.92
2122 2145 6.017275 CGGAGGTAGTAACGAGTAAATCATCT 60.017 42.308 0.00 0.00 0.00 2.90
2134 2157 2.358939 AAGCAACGGAGGTAGTAACG 57.641 50.000 0.00 0.00 0.00 3.18
2141 2164 5.163478 ACGTCTTATATTAAGCAACGGAGGT 60.163 40.000 11.01 0.00 33.26 3.85
2146 2169 7.269511 TGCAAAAACGTCTTATATTAAGCAACG 59.730 33.333 0.00 6.85 35.00 4.10
2149 2172 7.812648 ACTGCAAAAACGTCTTATATTAAGCA 58.187 30.769 0.00 0.00 0.00 3.91
2150 2173 8.669394 AACTGCAAAAACGTCTTATATTAAGC 57.331 30.769 0.00 0.00 0.00 3.09
2175 2198 7.846644 AAGACATTTTTGCAGTTCAATTTGA 57.153 28.000 0.00 0.00 34.12 2.69
2194 2239 5.461327 ACCTCCGTCCCTTAATATAAGACA 58.539 41.667 0.00 0.00 0.00 3.41
2281 2326 1.672881 CATACAGCCTAAGCAAGTGGC 59.327 52.381 0.00 0.00 46.42 5.01
2358 2403 5.709631 TCATTTAGGACAAGCACTGCAAATA 59.290 36.000 3.30 0.00 0.00 1.40
2868 2913 6.058183 ACATAGAATAATGAGGTTGGAGCAC 58.942 40.000 0.00 0.00 0.00 4.40
2928 2973 1.276989 ACAATCTGCAAATGGGCAAGG 59.723 47.619 0.00 0.00 44.40 3.61
2931 2976 2.523245 TGTACAATCTGCAAATGGGCA 58.477 42.857 0.00 0.00 42.53 5.36
2934 2979 6.317088 CAGTACTTGTACAATCTGCAAATGG 58.683 40.000 9.13 0.00 0.00 3.16
3126 3171 0.751643 AGGGACACAGCACAACCAAC 60.752 55.000 0.00 0.00 0.00 3.77
3156 3201 7.222031 GCGTAAACAGTGAGATACATGATACAA 59.778 37.037 0.00 0.00 0.00 2.41
3172 3217 5.840243 AAAAACTAAAGGGCGTAAACAGT 57.160 34.783 0.00 0.00 0.00 3.55
3175 3220 8.578308 AAATGTAAAAACTAAAGGGCGTAAAC 57.422 30.769 0.00 0.00 0.00 2.01
3237 3282 7.770366 TGCTGAAAATGGATATCTGCAATAT 57.230 32.000 2.05 0.00 42.52 1.28
3238 3283 7.585579 TTGCTGAAAATGGATATCTGCAATA 57.414 32.000 13.03 0.00 46.25 1.90
3352 3397 7.327032 GCTCAATAGAAGTTGGAAATGAAACAC 59.673 37.037 0.00 0.00 0.00 3.32
3360 3405 4.397420 TGCAGCTCAATAGAAGTTGGAAA 58.603 39.130 0.00 0.00 0.00 3.13
3372 3417 2.240667 ACATTAGGGACTGCAGCTCAAT 59.759 45.455 15.27 3.79 41.52 2.57
3598 3644 1.436983 GCTGGCCGCATGTAGGTTAC 61.437 60.000 13.61 3.63 38.92 2.50
3626 3676 6.571605 AGTACAAGACATCTCATGACATCAG 58.428 40.000 0.00 0.00 0.00 2.90
3666 3716 3.807209 GCAGATCCATTACCACGCCTATT 60.807 47.826 0.00 0.00 0.00 1.73
3672 3722 2.804527 CAGATGCAGATCCATTACCACG 59.195 50.000 0.00 0.00 0.00 4.94
3737 3787 3.440173 ACCACCAAAAATAGCAGATGTCG 59.560 43.478 0.00 0.00 0.00 4.35
3762 3812 3.211045 ACAAAAGTGCGTAACAGATGGT 58.789 40.909 0.00 0.00 0.00 3.55
3831 3881 4.918810 AAGCGAAACCAGAAAATGTCTT 57.081 36.364 0.00 0.00 32.70 3.01
4105 4155 1.377725 ACATAGTGTGCAGCCCAGC 60.378 57.895 0.00 0.00 0.00 4.85
4191 4243 7.828712 ACATGAAAAGTCTACTGTACTCCTAC 58.171 38.462 0.00 0.00 0.00 3.18
4232 4284 6.527423 AGAGGTAGAGCTAGTACTATGTGAC 58.473 44.000 2.33 0.00 0.00 3.67
4381 4435 4.019950 CCTTCCAGATGAAAAATGGCCTTT 60.020 41.667 3.32 0.00 33.92 3.11
4412 4466 3.380004 CACCAGTTTCTAAAAGGTGCACA 59.620 43.478 20.43 0.00 38.59 4.57
4425 4479 2.869233 ATGCACAACACACCAGTTTC 57.131 45.000 0.00 0.00 0.00 2.78
4500 4554 8.988934 TGCCGATAATAATCAGATAAGTCAAAC 58.011 33.333 0.00 0.00 31.93 2.93
4509 4563 9.113838 GTCCATTTATGCCGATAATAATCAGAT 57.886 33.333 0.00 0.00 31.93 2.90
4514 4568 7.499232 GCTAGGTCCATTTATGCCGATAATAAT 59.501 37.037 0.00 0.00 0.00 1.28
4528 4585 5.663106 TGAGAAGACATAGCTAGGTCCATTT 59.337 40.000 29.54 19.77 37.70 2.32
4555 4659 1.939934 CGTGGTGCCATCAAATCGTAT 59.060 47.619 0.00 0.00 0.00 3.06
4616 4720 8.190326 TGTCTCTCTTTGAAACAAGACCTATA 57.810 34.615 0.00 0.00 33.79 1.31
4659 4763 7.557719 AGGATTGTATTCCACTACATTTTGAGG 59.442 37.037 0.00 0.00 38.32 3.86
4669 4773 9.967451 TTCAATTTGTAGGATTGTATTCCACTA 57.033 29.630 0.00 0.00 38.32 2.74
4699 4810 8.986477 ATTGTAAGGAGTTTTTCATATGTTGC 57.014 30.769 1.90 0.00 0.00 4.17
4854 4965 4.349636 TCAGGGATCAGTTTTTGAGTACCA 59.650 41.667 0.00 0.00 39.68 3.25
4866 4977 1.468985 CAGACGAGTCAGGGATCAGT 58.531 55.000 5.99 0.00 0.00 3.41
4893 5004 3.045688 GCTGCAGAAACAGTAGCAAAAC 58.954 45.455 20.43 0.00 43.09 2.43
4957 5068 1.742324 TTGCTCAACCAAATGCGGCA 61.742 50.000 4.58 4.58 0.00 5.69
5019 5130 1.463831 GACGACAGAGACTGCGAACTA 59.536 52.381 16.93 0.00 35.69 2.24
5152 5263 1.376037 GGGCGACTCCACCTTTCAG 60.376 63.158 0.00 0.00 36.21 3.02
5172 5283 7.404985 CAGAACAAAATCAAGACGATCATAGG 58.595 38.462 0.00 0.00 31.11 2.57
5180 5291 3.904136 AGGCAGAACAAAATCAAGACG 57.096 42.857 0.00 0.00 0.00 4.18
5204 5315 3.002862 TGAAATTCGTTTGACGTCCAAGG 59.997 43.478 14.12 14.09 43.14 3.61
5290 5401 9.688592 ACTTATAATATGTACGTGTAAGCCTTC 57.311 33.333 0.00 0.00 0.00 3.46
5416 5702 6.431234 ACTGAGATTTAGCAATTCCGTTTCTT 59.569 34.615 0.00 0.00 0.00 2.52
5506 5792 1.287442 TGGGCATGGCTCCAAATCTTA 59.713 47.619 19.78 0.00 0.00 2.10
5511 5797 2.109774 CTAATTGGGCATGGCTCCAAA 58.890 47.619 19.78 9.15 40.31 3.28
5647 6198 3.115390 ACATGTGTATAGACAGGCCCTT 58.885 45.455 13.91 0.00 35.82 3.95
5649 6200 4.891992 ATACATGTGTATAGACAGGCCC 57.108 45.455 13.91 0.00 39.29 5.80
5686 6237 5.243954 ACACATACTAGCACAACTCTTCTGA 59.756 40.000 0.00 0.00 0.00 3.27
5689 6240 6.787085 AAACACATACTAGCACAACTCTTC 57.213 37.500 0.00 0.00 0.00 2.87
5759 6310 5.770685 AGGCTTATCATTATCCTCCCTTC 57.229 43.478 0.00 0.00 0.00 3.46
5796 6347 9.846248 AGCAAAAGATAACATTGTAAGAATCAC 57.154 29.630 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.