Multiple sequence alignment - TraesCS5A01G429400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G429400 chr5A 100.000 5207 0 0 1 5207 613588064 613593270 0.000000e+00 9616
1 TraesCS5A01G429400 chr5A 94.052 269 10 2 3651 3919 421861466 421861728 2.260000e-108 403
2 TraesCS5A01G429400 chr5D 93.319 1377 55 16 2289 3655 491440724 491442073 0.000000e+00 1999
3 TraesCS5A01G429400 chr5D 88.997 1545 90 40 1 1496 491438542 491440055 0.000000e+00 1838
4 TraesCS5A01G429400 chr5D 95.302 596 23 3 3916 4507 491442069 491442663 0.000000e+00 941
5 TraesCS5A01G429400 chr5D 92.047 591 40 5 1700 2289 491440178 491440762 0.000000e+00 824
6 TraesCS5A01G429400 chr5D 92.875 393 20 4 4668 5058 491442662 491443048 9.790000e-157 564
7 TraesCS5A01G429400 chr5D 93.814 97 6 0 5065 5161 491443290 491443386 4.200000e-31 147
8 TraesCS5A01G429400 chr5B 88.171 1640 92 42 3 1591 606021026 606022614 0.000000e+00 1860
9 TraesCS5A01G429400 chr5B 90.022 1343 89 19 2289 3625 606023242 606024545 0.000000e+00 1696
10 TraesCS5A01G429400 chr5B 95.017 582 27 1 3926 4505 606024568 606025149 0.000000e+00 913
11 TraesCS5A01G429400 chr5B 89.825 629 51 4 1668 2287 606022654 606023278 0.000000e+00 795
12 TraesCS5A01G429400 chr5B 91.770 486 35 4 4669 5151 606025150 606025633 0.000000e+00 671
13 TraesCS5A01G429400 chr2D 89.617 366 38 0 1117 1482 290735503 290735868 2.840000e-127 466
14 TraesCS5A01G429400 chr2D 74.737 760 171 18 2427 3181 290737741 290738484 2.340000e-83 320
15 TraesCS5A01G429400 chr2D 81.844 358 63 2 1126 1482 326203897 326204253 3.050000e-77 300
16 TraesCS5A01G429400 chr2B 88.798 366 41 0 1117 1482 340590607 340590972 2.860000e-122 449
17 TraesCS5A01G429400 chr2B 82.243 321 56 1 1163 1482 395529914 395530234 5.140000e-70 276
18 TraesCS5A01G429400 chr2A 88.618 369 42 0 1117 1485 315041519 315041151 2.860000e-122 449
19 TraesCS5A01G429400 chr2A 95.506 267 6 2 3652 3918 158065480 158065740 6.230000e-114 422
20 TraesCS5A01G429400 chr2A 94.074 270 10 2 3651 3920 752071010 752070747 6.280000e-109 405
21 TraesCS5A01G429400 chr2A 74.512 769 175 18 2427 3190 315039276 315038524 1.090000e-81 315
22 TraesCS5A01G429400 chr2A 96.610 177 6 0 4497 4673 762259960 762259784 1.420000e-75 294
23 TraesCS5A01G429400 chr2A 98.204 167 3 0 4505 4671 609646491 609646325 5.100000e-75 292
24 TraesCS5A01G429400 chr4A 94.565 276 9 2 3648 3923 19113494 19113225 6.230000e-114 422
25 TraesCS5A01G429400 chr3A 94.565 276 7 4 3647 3920 516637452 516637721 2.240000e-113 420
26 TraesCS5A01G429400 chr3A 94.757 267 8 2 3652 3918 127081267 127081007 1.350000e-110 411
27 TraesCS5A01G429400 chr3A 97.661 171 3 1 4502 4672 89152751 89152582 5.100000e-75 292
28 TraesCS5A01G429400 chr7A 94.382 267 9 2 3652 3918 561117546 561117806 6.280000e-109 405
29 TraesCS5A01G429400 chr6A 93.502 277 11 4 3647 3923 511460656 511460925 6.280000e-109 405
30 TraesCS5A01G429400 chr1A 93.333 270 12 2 3651 3920 73312421 73312158 1.360000e-105 394
31 TraesCS5A01G429400 chr7B 97.688 173 4 0 4497 4669 1256688 1256860 1.100000e-76 298
32 TraesCS5A01G429400 chr7B 97.126 174 5 0 4498 4671 131512335 131512162 1.420000e-75 294
33 TraesCS5A01G429400 chr7B 92.386 197 11 3 4497 4689 349108399 349108595 1.430000e-70 278
34 TraesCS5A01G429400 chr6B 97.674 172 4 0 4502 4673 114057204 114057033 3.940000e-76 296
35 TraesCS5A01G429400 chr3B 98.225 169 2 1 4502 4670 18858960 18858793 1.420000e-75 294
36 TraesCS5A01G429400 chr4B 92.929 198 10 3 4505 4701 658178326 658178132 8.530000e-73 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G429400 chr5A 613588064 613593270 5206 False 9616.000000 9616 100.000000 1 5207 1 chr5A.!!$F2 5206
1 TraesCS5A01G429400 chr5D 491438542 491443386 4844 False 1052.166667 1999 92.725667 1 5161 6 chr5D.!!$F1 5160
2 TraesCS5A01G429400 chr5B 606021026 606025633 4607 False 1187.000000 1860 90.961000 3 5151 5 chr5B.!!$F1 5148
3 TraesCS5A01G429400 chr2D 290735503 290738484 2981 False 393.000000 466 82.177000 1117 3181 2 chr2D.!!$F2 2064
4 TraesCS5A01G429400 chr2A 315038524 315041519 2995 True 382.000000 449 81.565000 1117 3190 2 chr2A.!!$R4 2073

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
395 411 0.039346 GCTTCTCCGGTAGTATCGCC 60.039 60.0 0.00 0.00 0.00 5.54 F
1534 1628 0.103208 CTTTCTCTCGGGGATCACGG 59.897 60.0 8.84 2.65 0.00 4.94 F
1577 1671 0.319813 GTTGCCTTGCGATTTGGCTT 60.320 50.0 4.46 0.00 46.23 4.35 F
3479 4815 0.453390 GCTGAGGGCACAATGTTAGC 59.547 55.0 0.00 0.00 41.35 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1809 0.321919 TGTCAGAATCAGCACCTGGC 60.322 55.0 0.00 0.00 45.30 4.85 R
3196 4532 2.014641 GAGCACATCGAATTGCATCG 57.985 50.0 20.19 3.28 41.48 3.84 R
3490 4826 5.516339 GCATAATGGGAGATTCAAAACGTTG 59.484 40.0 0.00 0.00 35.95 4.10 R
4486 5827 1.752683 AGTATTCTGCGAGACCGAGT 58.247 50.0 0.00 0.00 38.22 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.597728 CTCGCGGAGGACCTAGGC 61.598 72.222 9.30 0.00 0.00 3.93
25 26 4.208686 GCGGAGGACCTAGGCGTG 62.209 72.222 9.30 0.00 0.00 5.34
28 29 3.155167 GAGGACCTAGGCGTGGGG 61.155 72.222 9.30 6.26 0.00 4.96
61 62 3.424565 CGTTCTGAGACACTACGTAGGTG 60.425 52.174 25.63 21.16 40.19 4.00
62 63 2.082231 TCTGAGACACTACGTAGGTGC 58.918 52.381 25.63 13.83 38.14 5.01
64 65 2.082231 TGAGACACTACGTAGGTGCTC 58.918 52.381 25.63 24.01 38.14 4.26
65 66 1.062294 GAGACACTACGTAGGTGCTCG 59.938 57.143 25.63 9.57 38.14 5.03
67 68 1.226603 CACTACGTAGGTGCTCGCC 60.227 63.158 25.63 0.00 0.00 5.54
69 70 3.465296 CTACGTAGGTGCTCGCCGG 62.465 68.421 15.07 0.00 0.00 6.13
71 72 2.867793 TACGTAGGTGCTCGCCGGTA 62.868 60.000 1.90 0.00 0.00 4.02
72 73 2.412112 GTAGGTGCTCGCCGGTAG 59.588 66.667 1.90 1.89 0.00 3.18
73 74 2.831742 TAGGTGCTCGCCGGTAGG 60.832 66.667 1.90 0.00 41.62 3.18
86 87 1.115930 CGGTAGGAGCTAGGCCATGT 61.116 60.000 5.01 0.00 0.00 3.21
107 108 1.664873 CAGGTCAATTTTGCGCCCA 59.335 52.632 4.18 0.00 0.00 5.36
395 411 0.039346 GCTTCTCCGGTAGTATCGCC 60.039 60.000 0.00 0.00 0.00 5.54
430 447 4.898829 TCATGCGCTTTATTTATGCTGT 57.101 36.364 9.73 0.00 0.00 4.40
431 448 6.558771 ATCATGCGCTTTATTTATGCTGTA 57.441 33.333 9.73 0.00 0.00 2.74
432 449 5.989249 TCATGCGCTTTATTTATGCTGTAG 58.011 37.500 9.73 0.00 0.00 2.74
439 456 7.055598 CGCTTTATTTATGCTGTAGTACGTTC 58.944 38.462 0.00 0.00 0.00 3.95
443 460 2.846039 ATGCTGTAGTACGTTCGGAG 57.154 50.000 0.00 0.00 0.00 4.63
472 510 0.607217 TGCCTGAGTGCCTGTTGATG 60.607 55.000 0.00 0.00 0.00 3.07
476 514 0.890542 TGAGTGCCTGTTGATGTGCC 60.891 55.000 0.00 0.00 0.00 5.01
500 538 6.096282 CCTTTGACTTCCCTTCTGTTTTGTTA 59.904 38.462 0.00 0.00 0.00 2.41
525 563 1.326852 CTCTCACATTGACGAGCATGC 59.673 52.381 10.51 10.51 0.00 4.06
559 599 4.499183 GAGACGTCAACTGAATTCATCCT 58.501 43.478 19.50 0.00 0.00 3.24
572 612 9.125026 ACTGAATTCATCCTACCAAATCAATAC 57.875 33.333 8.96 0.00 0.00 1.89
579 619 5.496556 TCCTACCAAATCAATACACTGTGG 58.503 41.667 13.09 0.00 0.00 4.17
587 627 5.964958 ATCAATACACTGTGGGAGTTTTG 57.035 39.130 13.09 6.54 29.75 2.44
591 631 2.572290 ACACTGTGGGAGTTTTGCTAC 58.428 47.619 13.09 0.00 29.75 3.58
592 632 2.092646 ACACTGTGGGAGTTTTGCTACA 60.093 45.455 13.09 0.00 35.02 2.74
595 636 1.885887 TGTGGGAGTTTTGCTACATGC 59.114 47.619 0.00 0.00 43.25 4.06
614 655 1.068474 CAACCGTTCGATTCGAGCTT 58.932 50.000 18.64 6.49 37.14 3.74
633 674 1.371467 TGGATCTGGGCAAGGAAAGA 58.629 50.000 0.00 0.00 0.00 2.52
634 675 1.925255 TGGATCTGGGCAAGGAAAGAT 59.075 47.619 0.00 0.00 32.10 2.40
635 676 2.312741 TGGATCTGGGCAAGGAAAGATT 59.687 45.455 0.00 0.00 29.59 2.40
649 690 8.066000 GCAAGGAAAGATTCAATGTTTTCAAAG 58.934 33.333 1.29 0.00 32.57 2.77
664 705 7.763356 TGTTTTCAAAGAATCCGTTTTCTACA 58.237 30.769 0.00 0.00 34.89 2.74
665 706 7.913297 TGTTTTCAAAGAATCCGTTTTCTACAG 59.087 33.333 0.00 0.00 34.89 2.74
724 765 8.915057 TTGAATTTTTAAAAATGGGAGCATGA 57.085 26.923 23.34 1.44 38.53 3.07
725 766 8.915057 TGAATTTTTAAAAATGGGAGCATGAA 57.085 26.923 23.34 0.00 38.53 2.57
726 767 9.347240 TGAATTTTTAAAAATGGGAGCATGAAA 57.653 25.926 23.34 0.00 38.53 2.69
756 802 5.762179 ATCACCAGATACTTCTCCAACAA 57.238 39.130 0.00 0.00 31.14 2.83
833 883 2.054473 TTTGTTACCTTCCCGGCGGT 62.054 55.000 26.32 8.37 37.31 5.68
847 897 2.764547 CGGTTCCCTCCCTCCCTC 60.765 72.222 0.00 0.00 0.00 4.30
848 898 2.764547 GGTTCCCTCCCTCCCTCG 60.765 72.222 0.00 0.00 0.00 4.63
849 899 2.039137 GTTCCCTCCCTCCCTCGT 59.961 66.667 0.00 0.00 0.00 4.18
853 903 1.612442 CCCTCCCTCCCTCGTTTCA 60.612 63.158 0.00 0.00 0.00 2.69
854 904 1.597461 CCTCCCTCCCTCGTTTCAC 59.403 63.158 0.00 0.00 0.00 3.18
859 909 0.905337 CCTCCCTCGTTTCACCCTCT 60.905 60.000 0.00 0.00 0.00 3.69
938 1013 2.125391 TAGCAGCTGAGCGCCAAG 60.125 61.111 20.43 2.50 40.39 3.61
949 1024 2.485122 CGCCAAGCCACGAAATCC 59.515 61.111 0.00 0.00 0.00 3.01
950 1025 2.885113 GCCAAGCCACGAAATCCC 59.115 61.111 0.00 0.00 0.00 3.85
951 1026 2.710902 GCCAAGCCACGAAATCCCC 61.711 63.158 0.00 0.00 0.00 4.81
952 1027 1.304052 CCAAGCCACGAAATCCCCA 60.304 57.895 0.00 0.00 0.00 4.96
953 1028 0.897863 CCAAGCCACGAAATCCCCAA 60.898 55.000 0.00 0.00 0.00 4.12
954 1029 1.185315 CAAGCCACGAAATCCCCAAT 58.815 50.000 0.00 0.00 0.00 3.16
990 1069 3.015145 GCCAACCCTAGCCTCCCA 61.015 66.667 0.00 0.00 0.00 4.37
1514 1608 0.391927 TTACCTTCCCACCGCAATCG 60.392 55.000 0.00 0.00 0.00 3.34
1516 1610 2.436646 CTTCCCACCGCAATCGCT 60.437 61.111 0.00 0.00 35.30 4.93
1534 1628 0.103208 CTTTCTCTCGGGGATCACGG 59.897 60.000 8.84 2.65 0.00 4.94
1536 1630 3.917760 CTCTCGGGGATCACGGCC 61.918 72.222 8.84 0.00 0.00 6.13
1545 1639 1.067582 GATCACGGCCCTTACGAGG 59.932 63.158 0.00 0.00 43.15 4.63
1575 1669 2.088178 CGTTGCCTTGCGATTTGGC 61.088 57.895 0.00 0.00 46.26 4.52
1577 1671 0.319813 GTTGCCTTGCGATTTGGCTT 60.320 50.000 4.46 0.00 46.23 4.35
1613 1716 2.662866 TGGTCAGTAGCTACGCCTAAT 58.337 47.619 24.81 6.11 0.00 1.73
1618 1721 5.154932 GTCAGTAGCTACGCCTAATGTATG 58.845 45.833 17.99 7.11 35.52 2.39
1621 1724 5.802451 CAGTAGCTACGCCTAATGTATGATG 59.198 44.000 17.99 2.23 30.93 3.07
1622 1725 5.710567 AGTAGCTACGCCTAATGTATGATGA 59.289 40.000 17.99 0.00 0.00 2.92
1623 1726 5.065704 AGCTACGCCTAATGTATGATGAG 57.934 43.478 0.00 0.00 0.00 2.90
1624 1727 3.614616 GCTACGCCTAATGTATGATGAGC 59.385 47.826 0.00 0.00 0.00 4.26
1626 1729 2.634940 ACGCCTAATGTATGATGAGCCT 59.365 45.455 0.00 0.00 0.00 4.58
1627 1730 3.257393 CGCCTAATGTATGATGAGCCTC 58.743 50.000 0.00 0.00 0.00 4.70
1629 1732 3.056536 GCCTAATGTATGATGAGCCTCGA 60.057 47.826 0.00 0.00 0.00 4.04
1630 1733 4.382470 GCCTAATGTATGATGAGCCTCGAT 60.382 45.833 0.00 0.00 0.00 3.59
1631 1734 5.347342 CCTAATGTATGATGAGCCTCGATC 58.653 45.833 0.00 0.00 0.00 3.69
1632 1735 4.879197 AATGTATGATGAGCCTCGATCA 57.121 40.909 8.58 8.58 33.20 2.92
1633 1736 3.650070 TGTATGATGAGCCTCGATCAC 57.350 47.619 8.39 0.82 31.47 3.06
1634 1737 2.958355 TGTATGATGAGCCTCGATCACA 59.042 45.455 8.39 2.80 31.47 3.58
1635 1738 3.384467 TGTATGATGAGCCTCGATCACAA 59.616 43.478 8.39 0.47 31.47 3.33
1636 1739 2.299993 TGATGAGCCTCGATCACAAC 57.700 50.000 0.00 0.00 28.34 3.32
1638 1741 2.159184 TGATGAGCCTCGATCACAACTC 60.159 50.000 0.00 0.00 28.34 3.01
1639 1742 1.256812 TGAGCCTCGATCACAACTCA 58.743 50.000 0.00 0.00 0.00 3.41
1640 1743 1.827344 TGAGCCTCGATCACAACTCAT 59.173 47.619 0.00 0.00 0.00 2.90
1641 1744 3.023832 TGAGCCTCGATCACAACTCATA 58.976 45.455 0.00 0.00 0.00 2.15
1642 1745 3.447229 TGAGCCTCGATCACAACTCATAA 59.553 43.478 0.00 0.00 0.00 1.90
1643 1746 3.786635 AGCCTCGATCACAACTCATAAC 58.213 45.455 0.00 0.00 0.00 1.89
1646 1749 5.303078 AGCCTCGATCACAACTCATAACTAT 59.697 40.000 0.00 0.00 0.00 2.12
1647 1750 5.631512 GCCTCGATCACAACTCATAACTATC 59.368 44.000 0.00 0.00 0.00 2.08
1648 1751 6.515862 GCCTCGATCACAACTCATAACTATCT 60.516 42.308 0.00 0.00 0.00 1.98
1649 1752 6.860539 CCTCGATCACAACTCATAACTATCTG 59.139 42.308 0.00 0.00 0.00 2.90
1650 1753 7.255277 CCTCGATCACAACTCATAACTATCTGA 60.255 40.741 0.00 0.00 0.00 3.27
1653 1756 7.864882 CGATCACAACTCATAACTATCTGATGT 59.135 37.037 0.00 0.00 0.00 3.06
1654 1757 8.883954 ATCACAACTCATAACTATCTGATGTG 57.116 34.615 0.00 0.00 35.32 3.21
1655 1758 8.066612 TCACAACTCATAACTATCTGATGTGA 57.933 34.615 0.00 0.00 38.28 3.58
1656 1759 8.699130 TCACAACTCATAACTATCTGATGTGAT 58.301 33.333 0.00 0.00 36.89 3.06
1657 1760 9.322773 CACAACTCATAACTATCTGATGTGATT 57.677 33.333 0.00 0.00 35.72 2.57
1658 1761 9.539825 ACAACTCATAACTATCTGATGTGATTC 57.460 33.333 0.00 0.00 0.00 2.52
1659 1762 9.761504 CAACTCATAACTATCTGATGTGATTCT 57.238 33.333 0.00 0.00 0.00 2.40
1662 1765 9.853555 CTCATAACTATCTGATGTGATTCTACC 57.146 37.037 0.00 0.00 0.00 3.18
1663 1766 8.515414 TCATAACTATCTGATGTGATTCTACCG 58.485 37.037 0.00 0.00 0.00 4.02
1664 1767 6.961360 AACTATCTGATGTGATTCTACCGA 57.039 37.500 0.00 0.00 0.00 4.69
1665 1768 7.531857 AACTATCTGATGTGATTCTACCGAT 57.468 36.000 0.00 0.00 0.00 4.18
1666 1769 7.531857 ACTATCTGATGTGATTCTACCGATT 57.468 36.000 0.00 0.00 0.00 3.34
1672 1775 6.513180 TGATGTGATTCTACCGATTTAGGTC 58.487 40.000 0.00 0.00 44.68 3.85
1697 1800 2.024414 GGCATGGTTCTCGCCTTATTT 58.976 47.619 0.00 0.00 42.78 1.40
1706 1809 5.522824 GGTTCTCGCCTTATTTTGTAGGTAG 59.477 44.000 0.00 0.00 33.91 3.18
1714 1817 2.194201 TTTTGTAGGTAGCCAGGTGC 57.806 50.000 0.00 0.00 41.71 5.01
1741 1844 4.820897 TCTGACACTGCACCAATAACTAG 58.179 43.478 0.00 0.00 0.00 2.57
1746 1849 4.081642 ACACTGCACCAATAACTAGTCGAT 60.082 41.667 0.00 0.00 0.00 3.59
1747 1850 4.870426 CACTGCACCAATAACTAGTCGATT 59.130 41.667 0.00 0.00 0.00 3.34
1748 1851 6.040247 CACTGCACCAATAACTAGTCGATTA 58.960 40.000 0.00 0.00 0.00 1.75
1749 1852 6.019801 CACTGCACCAATAACTAGTCGATTAC 60.020 42.308 0.00 0.00 0.00 1.89
1750 1853 6.127423 ACTGCACCAATAACTAGTCGATTACT 60.127 38.462 0.00 0.00 42.62 2.24
1767 1870 5.632347 CGATTACTAATTGGCTACGGTTAGG 59.368 44.000 0.00 0.00 0.00 2.69
1800 1903 1.228245 TGCTGTGGGCCTGTTTCTC 60.228 57.895 4.53 0.00 40.92 2.87
1801 1904 1.973812 GCTGTGGGCCTGTTTCTCC 60.974 63.158 4.53 0.00 34.27 3.71
1950 2703 6.012858 ACACATTATCTGGGAGGACTGTTTTA 60.013 38.462 0.00 0.00 30.50 1.52
1995 2755 3.490439 TTCTCAACACATCCTTCAGCA 57.510 42.857 0.00 0.00 0.00 4.41
2006 2766 6.989169 ACACATCCTTCAGCAGAGATATTTAC 59.011 38.462 0.00 0.00 0.00 2.01
2036 2796 9.124807 GTTAATGTGTTTGCTTTACATACTTCC 57.875 33.333 0.00 0.00 34.18 3.46
2039 2799 6.908825 TGTGTTTGCTTTACATACTTCCATC 58.091 36.000 0.00 0.00 32.05 3.51
2193 2993 3.181480 GGGAGCAGCTAGAGAACTTGTAG 60.181 52.174 0.00 0.00 0.00 2.74
2231 3034 4.766375 TGGCCTACTGTATAAAAGAGTGC 58.234 43.478 3.32 0.00 32.98 4.40
2237 3040 7.203910 CCTACTGTATAAAAGAGTGCGAGATT 58.796 38.462 0.00 0.00 32.98 2.40
2297 3265 3.748370 TGGGAACACACACCTGGT 58.252 55.556 0.00 0.00 33.40 4.00
2298 3266 2.932404 TGGGAACACACACCTGGTA 58.068 52.632 0.00 0.00 33.40 3.25
2299 3267 1.214217 TGGGAACACACACCTGGTAA 58.786 50.000 0.00 0.00 33.40 2.85
2300 3268 1.564818 TGGGAACACACACCTGGTAAA 59.435 47.619 0.00 0.00 33.40 2.01
2301 3269 2.175931 TGGGAACACACACCTGGTAAAT 59.824 45.455 0.00 0.00 33.40 1.40
2302 3270 3.227614 GGGAACACACACCTGGTAAATT 58.772 45.455 0.00 0.00 0.00 1.82
2303 3271 3.005367 GGGAACACACACCTGGTAAATTG 59.995 47.826 0.00 0.00 0.00 2.32
2304 3272 3.886505 GGAACACACACCTGGTAAATTGA 59.113 43.478 0.00 0.00 0.00 2.57
2305 3273 4.522789 GGAACACACACCTGGTAAATTGAT 59.477 41.667 0.00 0.00 0.00 2.57
2306 3274 5.010617 GGAACACACACCTGGTAAATTGATT 59.989 40.000 0.00 0.00 0.00 2.57
2307 3275 6.207810 GGAACACACACCTGGTAAATTGATTA 59.792 38.462 0.00 0.00 0.00 1.75
2308 3276 7.093945 GGAACACACACCTGGTAAATTGATTAT 60.094 37.037 0.00 0.00 0.00 1.28
2309 3277 8.871629 AACACACACCTGGTAAATTGATTATA 57.128 30.769 0.00 0.00 0.00 0.98
2310 3278 8.506168 ACACACACCTGGTAAATTGATTATAG 57.494 34.615 0.00 0.00 0.00 1.31
2311 3279 8.325787 ACACACACCTGGTAAATTGATTATAGA 58.674 33.333 0.00 0.00 0.00 1.98
2312 3280 9.173021 CACACACCTGGTAAATTGATTATAGAA 57.827 33.333 0.00 0.00 0.00 2.10
2313 3281 9.747898 ACACACCTGGTAAATTGATTATAGAAA 57.252 29.630 0.00 0.00 0.00 2.52
2341 3309 3.805422 GTGAACACGACTGGTCATGTTAA 59.195 43.478 13.76 5.55 46.07 2.01
2510 3846 7.383102 AGACGATTGCTTGAAGATAAATTGT 57.617 32.000 0.00 2.61 0.00 2.71
2540 3876 3.057876 GCGTTGTAACATCAACCATGGAA 60.058 43.478 21.47 3.46 43.02 3.53
2684 4020 3.343617 TCATAAGTTAGTGTTGGCTGCC 58.656 45.455 12.87 12.87 0.00 4.85
2753 4089 3.857052 AGAAAACAGTGAAGTCGACACA 58.143 40.909 19.50 14.40 40.25 3.72
2801 4137 3.055458 TCGATGACATGGAGCCAAAAGTA 60.055 43.478 0.00 0.00 0.00 2.24
3243 4579 8.251026 TCCTATGTAGTTATCGGATAATTGCAG 58.749 37.037 21.63 13.13 32.54 4.41
3400 4736 3.118665 GCCCATATGATGCCTTTGTTTGT 60.119 43.478 3.65 0.00 0.00 2.83
3479 4815 0.453390 GCTGAGGGCACAATGTTAGC 59.547 55.000 0.00 0.00 41.35 3.09
3555 4891 4.342092 ACAGTAGTTGGCTCAAAGCATTTT 59.658 37.500 0.86 0.00 44.75 1.82
3593 4929 8.075574 GTGTGTCATGTTCTCAATTTGACAATA 58.924 33.333 8.12 0.00 45.73 1.90
3594 4930 8.795513 TGTGTCATGTTCTCAATTTGACAATAT 58.204 29.630 8.12 0.00 45.73 1.28
3605 4941 9.229784 CTCAATTTGACAATATTTTCATCCGAG 57.770 33.333 5.17 6.00 0.00 4.63
3607 4943 9.740239 CAATTTGACAATATTTTCATCCGAGAT 57.260 29.630 5.17 0.00 0.00 2.75
3662 4998 3.918294 TTTTTATGGTACTCCCTCCGG 57.082 47.619 0.00 0.00 0.00 5.14
3663 4999 2.555732 TTTATGGTACTCCCTCCGGT 57.444 50.000 0.00 0.00 0.00 5.28
3664 5000 2.077687 TTATGGTACTCCCTCCGGTC 57.922 55.000 0.00 0.00 0.00 4.79
3665 5001 0.186873 TATGGTACTCCCTCCGGTCC 59.813 60.000 0.00 0.00 0.00 4.46
3666 5002 1.591280 ATGGTACTCCCTCCGGTCCT 61.591 60.000 0.00 0.00 0.00 3.85
3667 5003 1.001376 GGTACTCCCTCCGGTCCTT 59.999 63.158 0.00 0.00 0.00 3.36
3668 5004 0.616964 GGTACTCCCTCCGGTCCTTT 60.617 60.000 0.00 0.00 0.00 3.11
3669 5005 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
3670 5006 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
3671 5007 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3672 5008 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
3673 5009 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
3674 5010 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
3675 5011 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
3676 5012 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
3677 5013 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
3678 5014 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
3679 5015 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
3680 5016 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
3681 5017 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
3682 5018 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
3683 5019 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
3684 5020 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
3685 5021 6.477688 CGGTCCTTTTTAGTTCGCATATAAGA 59.522 38.462 0.00 0.00 0.00 2.10
3686 5022 7.170998 CGGTCCTTTTTAGTTCGCATATAAGAT 59.829 37.037 0.00 0.00 0.00 2.40
3687 5023 8.837389 GGTCCTTTTTAGTTCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
3694 5030 9.594478 TTTAGTTCGCATATAAGATTTGACTGA 57.406 29.630 0.00 0.00 0.00 3.41
3695 5031 9.594478 TTAGTTCGCATATAAGATTTGACTGAA 57.406 29.630 0.00 0.00 0.00 3.02
3696 5032 8.136057 AGTTCGCATATAAGATTTGACTGAAG 57.864 34.615 0.00 0.00 0.00 3.02
3697 5033 7.766278 AGTTCGCATATAAGATTTGACTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
3698 5034 7.700322 TCGCATATAAGATTTGACTGAAGTC 57.300 36.000 3.41 3.41 44.97 3.01
3707 5043 3.896317 GACTGAAGTCAAGCCTCGT 57.104 52.632 5.58 0.00 44.18 4.18
3709 5045 3.299340 GACTGAAGTCAAGCCTCGTAA 57.701 47.619 5.58 0.00 44.18 3.18
3710 5046 3.650139 GACTGAAGTCAAGCCTCGTAAA 58.350 45.455 5.58 0.00 44.18 2.01
3711 5047 3.654414 ACTGAAGTCAAGCCTCGTAAAG 58.346 45.455 0.00 0.00 0.00 1.85
3712 5048 3.069729 ACTGAAGTCAAGCCTCGTAAAGT 59.930 43.478 0.00 0.00 0.00 2.66
3713 5049 4.058817 CTGAAGTCAAGCCTCGTAAAGTT 58.941 43.478 0.00 0.00 0.00 2.66
3714 5050 4.448210 TGAAGTCAAGCCTCGTAAAGTTT 58.552 39.130 0.00 0.00 0.00 2.66
3715 5051 4.272504 TGAAGTCAAGCCTCGTAAAGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
3716 5052 4.067972 AGTCAAGCCTCGTAAAGTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
3717 5053 3.808174 AGTCAAGCCTCGTAAAGTTTGAC 59.192 43.478 10.54 10.54 42.37 3.18
3718 5054 3.059120 GTCAAGCCTCGTAAAGTTTGACC 60.059 47.826 8.09 0.00 39.44 4.02
3719 5055 2.875933 CAAGCCTCGTAAAGTTTGACCA 59.124 45.455 0.00 0.00 0.00 4.02
3720 5056 3.202829 AGCCTCGTAAAGTTTGACCAA 57.797 42.857 0.00 0.00 0.00 3.67
3721 5057 2.876550 AGCCTCGTAAAGTTTGACCAAC 59.123 45.455 0.00 0.00 35.32 3.77
3782 5118 7.677454 TCAATATCAATAGATGTGTCATGGC 57.323 36.000 0.00 0.00 35.67 4.40
3783 5119 7.455891 TCAATATCAATAGATGTGTCATGGCT 58.544 34.615 0.00 0.00 35.67 4.75
3784 5120 7.940688 TCAATATCAATAGATGTGTCATGGCTT 59.059 33.333 0.00 0.00 35.67 4.35
3785 5121 9.223099 CAATATCAATAGATGTGTCATGGCTTA 57.777 33.333 0.00 0.00 35.67 3.09
3786 5122 9.797642 AATATCAATAGATGTGTCATGGCTTAA 57.202 29.630 0.00 0.00 35.67 1.85
3787 5123 9.797642 ATATCAATAGATGTGTCATGGCTTAAA 57.202 29.630 0.00 0.00 35.67 1.52
3788 5124 7.558161 TCAATAGATGTGTCATGGCTTAAAG 57.442 36.000 0.00 0.00 0.00 1.85
3789 5125 7.112122 TCAATAGATGTGTCATGGCTTAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
3790 5126 7.611467 TCAATAGATGTGTCATGGCTTAAAGTT 59.389 33.333 0.00 0.00 0.00 2.66
3791 5127 7.944729 ATAGATGTGTCATGGCTTAAAGTTT 57.055 32.000 0.00 0.00 0.00 2.66
3792 5128 6.259550 AGATGTGTCATGGCTTAAAGTTTC 57.740 37.500 0.00 0.00 0.00 2.78
3793 5129 5.769662 AGATGTGTCATGGCTTAAAGTTTCA 59.230 36.000 0.00 0.00 0.00 2.69
3794 5130 6.435277 AGATGTGTCATGGCTTAAAGTTTCAT 59.565 34.615 0.00 0.00 0.00 2.57
3795 5131 7.611467 AGATGTGTCATGGCTTAAAGTTTCATA 59.389 33.333 0.00 0.00 0.00 2.15
3796 5132 7.701539 TGTGTCATGGCTTAAAGTTTCATAT 57.298 32.000 0.00 0.00 0.00 1.78
3797 5133 8.121305 TGTGTCATGGCTTAAAGTTTCATATT 57.879 30.769 0.00 0.00 0.00 1.28
3798 5134 8.028354 TGTGTCATGGCTTAAAGTTTCATATTG 58.972 33.333 0.00 0.00 0.00 1.90
3799 5135 8.028938 GTGTCATGGCTTAAAGTTTCATATTGT 58.971 33.333 0.00 0.00 0.00 2.71
3800 5136 9.237187 TGTCATGGCTTAAAGTTTCATATTGTA 57.763 29.630 0.00 0.00 0.00 2.41
3816 5152 8.916628 TCATATTGTATAACTTTAGCATGGCA 57.083 30.769 0.00 0.00 0.00 4.92
3817 5153 9.002600 TCATATTGTATAACTTTAGCATGGCAG 57.997 33.333 0.00 0.00 0.00 4.85
3818 5154 9.002600 CATATTGTATAACTTTAGCATGGCAGA 57.997 33.333 0.00 0.00 0.00 4.26
3819 5155 9.745018 ATATTGTATAACTTTAGCATGGCAGAT 57.255 29.630 0.00 0.00 0.00 2.90
3820 5156 6.866010 TGTATAACTTTAGCATGGCAGATG 57.134 37.500 0.00 0.00 0.00 2.90
3821 5157 6.356556 TGTATAACTTTAGCATGGCAGATGT 58.643 36.000 0.00 0.00 0.00 3.06
3822 5158 6.828273 TGTATAACTTTAGCATGGCAGATGTT 59.172 34.615 0.00 0.00 0.00 2.71
3823 5159 4.445452 AACTTTAGCATGGCAGATGTTG 57.555 40.909 0.00 0.00 0.00 3.33
3824 5160 3.689347 ACTTTAGCATGGCAGATGTTGA 58.311 40.909 0.00 0.00 0.00 3.18
3825 5161 4.275810 ACTTTAGCATGGCAGATGTTGAT 58.724 39.130 0.00 0.00 0.00 2.57
3826 5162 5.439721 ACTTTAGCATGGCAGATGTTGATA 58.560 37.500 0.00 0.00 0.00 2.15
3827 5163 6.066690 ACTTTAGCATGGCAGATGTTGATAT 58.933 36.000 0.00 0.00 0.00 1.63
3828 5164 6.548622 ACTTTAGCATGGCAGATGTTGATATT 59.451 34.615 0.00 0.00 0.00 1.28
3829 5165 6.964807 TTAGCATGGCAGATGTTGATATTT 57.035 33.333 0.00 0.00 0.00 1.40
3830 5166 5.864418 AGCATGGCAGATGTTGATATTTT 57.136 34.783 0.00 0.00 0.00 1.82
3831 5167 6.229936 AGCATGGCAGATGTTGATATTTTT 57.770 33.333 0.00 0.00 0.00 1.94
3858 5194 9.661563 TCATATAAATACGGTCAAACTTCAACT 57.338 29.630 0.00 0.00 0.00 3.16
3862 5198 6.445357 AATACGGTCAAACTTCAACTTTGT 57.555 33.333 0.00 0.00 31.63 2.83
3863 5199 4.091453 ACGGTCAAACTTCAACTTTGTG 57.909 40.909 0.00 0.00 31.63 3.33
3864 5200 3.754323 ACGGTCAAACTTCAACTTTGTGA 59.246 39.130 0.00 0.00 31.63 3.58
3865 5201 4.216687 ACGGTCAAACTTCAACTTTGTGAA 59.783 37.500 0.00 0.00 36.15 3.18
3892 5228 9.928236 GTTTGACTTCAGAGAATTCTAATATGC 57.072 33.333 8.25 0.00 30.73 3.14
3893 5229 9.671279 TTTGACTTCAGAGAATTCTAATATGCA 57.329 29.630 8.25 0.00 30.73 3.96
3894 5230 8.883954 TGACTTCAGAGAATTCTAATATGCAG 57.116 34.615 8.25 7.58 30.73 4.41
3895 5231 8.699130 TGACTTCAGAGAATTCTAATATGCAGA 58.301 33.333 8.25 0.00 30.73 4.26
3896 5232 9.195411 GACTTCAGAGAATTCTAATATGCAGAG 57.805 37.037 8.25 6.79 30.73 3.35
3897 5233 8.703743 ACTTCAGAGAATTCTAATATGCAGAGT 58.296 33.333 8.25 7.29 30.73 3.24
3907 5243 8.732746 TTCTAATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
3908 5244 6.984474 TCTAATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
3909 5245 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
3910 5246 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
3911 5247 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
4074 5410 4.752879 GACAACTGCCCGGCGCTA 62.753 66.667 7.64 2.72 38.78 4.26
4095 5431 0.626382 AGTCAGAGATCCTCCGGACA 59.374 55.000 0.00 0.00 37.60 4.02
4128 5464 3.207669 GAGGAATGCAGCAGCGGG 61.208 66.667 0.00 0.00 46.23 6.13
4164 5500 2.143419 GTGGGGCCAGATCTCGGAT 61.143 63.158 4.39 0.00 0.00 4.18
4251 5587 1.548719 ACCTGTATGTGTTAGCGAGCA 59.451 47.619 0.00 0.00 0.00 4.26
4253 5589 2.417379 CCTGTATGTGTTAGCGAGCAGT 60.417 50.000 0.00 0.00 0.00 4.40
4278 5614 5.005394 CGCTGCTGTATAAATTCGTAACAGT 59.995 40.000 0.00 0.00 39.74 3.55
4344 5683 4.167268 CGCTCTGTTGTACTACCTTCTTC 58.833 47.826 4.98 0.00 0.00 2.87
4380 5721 9.124807 CGTTTTGTTGGATAATTTACCTTCTTC 57.875 33.333 0.00 0.00 0.00 2.87
4410 5751 4.381411 AGAGAACTTTGCTTCGCTTAACT 58.619 39.130 0.00 0.00 26.78 2.24
4483 5824 2.031163 AACTGAGACTGGCCACGC 59.969 61.111 0.00 0.00 0.00 5.34
4486 5827 1.185618 ACTGAGACTGGCCACGCTAA 61.186 55.000 0.00 0.00 0.00 3.09
4490 5831 1.805945 GACTGGCCACGCTAACTCG 60.806 63.158 0.00 0.00 0.00 4.18
4506 5847 2.915349 ACTCGGTCTCGCAGAATACTA 58.085 47.619 0.00 0.00 34.09 1.82
4507 5848 2.613133 ACTCGGTCTCGCAGAATACTAC 59.387 50.000 0.00 0.00 34.09 2.73
4508 5849 2.873472 CTCGGTCTCGCAGAATACTACT 59.127 50.000 0.00 0.00 34.09 2.57
4509 5850 2.871022 TCGGTCTCGCAGAATACTACTC 59.129 50.000 0.00 0.00 34.09 2.59
4510 5851 2.031857 CGGTCTCGCAGAATACTACTCC 60.032 54.545 0.00 0.00 34.09 3.85
4511 5852 2.293955 GGTCTCGCAGAATACTACTCCC 59.706 54.545 0.00 0.00 34.09 4.30
4512 5853 3.215975 GTCTCGCAGAATACTACTCCCT 58.784 50.000 0.00 0.00 34.09 4.20
4513 5854 3.251487 GTCTCGCAGAATACTACTCCCTC 59.749 52.174 0.00 0.00 34.09 4.30
4514 5855 2.554893 CTCGCAGAATACTACTCCCTCC 59.445 54.545 0.00 0.00 34.09 4.30
4515 5856 1.267261 CGCAGAATACTACTCCCTCCG 59.733 57.143 0.00 0.00 0.00 4.63
4516 5857 2.308690 GCAGAATACTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
4517 5858 2.694109 GCAGAATACTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
4518 5859 3.243468 GCAGAATACTACTCCCTCCGTTC 60.243 52.174 0.00 0.00 0.00 3.95
4519 5860 3.318557 CAGAATACTACTCCCTCCGTTCC 59.681 52.174 0.00 0.00 0.00 3.62
4520 5861 3.204831 AGAATACTACTCCCTCCGTTCCT 59.795 47.826 0.00 0.00 0.00 3.36
4521 5862 4.414846 AGAATACTACTCCCTCCGTTCCTA 59.585 45.833 0.00 0.00 0.00 2.94
4522 5863 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
4523 5864 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4524 5865 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4525 5866 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4526 5867 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4527 5868 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4528 5869 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4529 5870 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4530 5871 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4531 5872 6.069705 TCCCTCCGTTCCTAAATATTTGTT 57.930 37.500 11.05 0.00 0.00 2.83
4532 5873 6.486941 TCCCTCCGTTCCTAAATATTTGTTT 58.513 36.000 11.05 0.00 0.00 2.83
4533 5874 6.949463 TCCCTCCGTTCCTAAATATTTGTTTT 59.051 34.615 11.05 0.00 0.00 2.43
4534 5875 7.452189 TCCCTCCGTTCCTAAATATTTGTTTTT 59.548 33.333 11.05 0.00 0.00 1.94
4535 5876 7.758076 CCCTCCGTTCCTAAATATTTGTTTTTC 59.242 37.037 11.05 0.00 0.00 2.29
4536 5877 8.520351 CCTCCGTTCCTAAATATTTGTTTTTCT 58.480 33.333 11.05 0.00 0.00 2.52
4563 5904 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
4564 5905 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
4565 5906 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
4566 5907 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
4567 5908 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
4569 5910 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
4570 5911 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
4609 5950 6.246420 AGTGTACATTCACTCATTTTGCTC 57.754 37.500 0.00 0.00 44.07 4.26
4610 5951 6.000219 AGTGTACATTCACTCATTTTGCTCT 59.000 36.000 0.00 0.00 44.07 4.09
4611 5952 6.072838 AGTGTACATTCACTCATTTTGCTCTG 60.073 38.462 0.00 0.00 44.07 3.35
4612 5953 5.764686 TGTACATTCACTCATTTTGCTCTGT 59.235 36.000 0.00 0.00 0.00 3.41
4613 5954 6.934083 TGTACATTCACTCATTTTGCTCTGTA 59.066 34.615 0.00 0.00 0.00 2.74
4614 5955 7.607607 TGTACATTCACTCATTTTGCTCTGTAT 59.392 33.333 0.00 0.00 0.00 2.29
4615 5956 6.849502 ACATTCACTCATTTTGCTCTGTATG 58.150 36.000 0.00 0.00 0.00 2.39
4616 5957 6.432162 ACATTCACTCATTTTGCTCTGTATGT 59.568 34.615 0.00 0.00 0.00 2.29
4617 5958 7.607607 ACATTCACTCATTTTGCTCTGTATGTA 59.392 33.333 0.00 0.00 0.00 2.29
4618 5959 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
4619 5960 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
4620 5961 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
4621 5962 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
4622 5963 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
4623 5964 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
4624 5965 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
4625 5966 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
4626 5967 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
4627 5968 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
4628 5969 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
4629 5970 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
4630 5971 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
4631 5972 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
4632 5973 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
4633 5974 8.310406 TCTGTATGTAGTCACTTGTTGAAATG 57.690 34.615 0.00 0.00 35.39 2.32
4634 5975 6.898041 TGTATGTAGTCACTTGTTGAAATGC 58.102 36.000 0.00 0.00 35.39 3.56
4635 5976 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
4636 5977 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
4637 5978 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
4638 5979 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
4639 5980 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
4640 5981 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
4641 5982 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
4642 5983 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
4643 5984 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
4644 5985 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
4645 5986 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
4646 5987 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
4647 5988 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
4648 5989 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
4649 5990 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
4650 5991 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
4651 5992 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
4652 5993 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
4653 5994 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
4655 5996 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
4656 5997 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
4657 5998 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
4658 5999 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
4659 6000 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
4660 6001 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
4661 6002 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
4662 6003 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
4663 6004 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4664 6005 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4665 6006 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4666 6007 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4667 6008 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
4880 6223 9.846248 AGCAAAAGATAACATTGTAAGAATCAC 57.154 29.630 0.00 0.00 0.00 3.06
4917 6260 5.770685 AGGCTTATCATTATCCTCCCTTC 57.229 43.478 0.00 0.00 0.00 3.46
4987 6330 6.787085 AAACACATACTAGCACAACTCTTC 57.213 37.500 0.00 0.00 0.00 2.87
4990 6333 5.243954 ACACATACTAGCACAACTCTTCTGA 59.756 40.000 0.00 0.00 0.00 3.27
5027 6370 4.891992 ATACATGTGTATAGACAGGCCC 57.108 45.455 13.91 0.00 39.29 5.80
5029 6372 3.115390 ACATGTGTATAGACAGGCCCTT 58.885 45.455 13.91 0.00 35.82 3.95
5161 6745 2.363359 CCTTTCTAATTGGGCATGGCTC 59.637 50.000 19.78 9.85 0.00 4.70
5162 6746 2.071778 TTCTAATTGGGCATGGCTCC 57.928 50.000 19.78 3.75 0.00 4.70
5163 6747 0.925558 TCTAATTGGGCATGGCTCCA 59.074 50.000 19.78 6.67 0.00 3.86
5164 6748 1.287442 TCTAATTGGGCATGGCTCCAA 59.713 47.619 19.78 15.52 40.83 3.53
5165 6749 2.109774 CTAATTGGGCATGGCTCCAAA 58.890 47.619 19.78 9.15 40.31 3.28
5166 6750 1.587066 AATTGGGCATGGCTCCAAAT 58.413 45.000 19.78 10.94 40.31 2.32
5167 6751 1.125633 ATTGGGCATGGCTCCAAATC 58.874 50.000 19.78 0.61 40.31 2.17
5168 6752 0.041535 TTGGGCATGGCTCCAAATCT 59.958 50.000 19.78 0.00 36.49 2.40
5169 6753 0.041535 TGGGCATGGCTCCAAATCTT 59.958 50.000 19.78 0.00 0.00 2.40
5170 6754 1.287442 TGGGCATGGCTCCAAATCTTA 59.713 47.619 19.78 0.00 0.00 2.10
5171 6755 1.959282 GGGCATGGCTCCAAATCTTAG 59.041 52.381 19.78 0.00 0.00 2.18
5172 6756 2.659428 GGCATGGCTCCAAATCTTAGT 58.341 47.619 12.86 0.00 0.00 2.24
5173 6757 2.620585 GGCATGGCTCCAAATCTTAGTC 59.379 50.000 12.86 0.00 0.00 2.59
5174 6758 3.282021 GCATGGCTCCAAATCTTAGTCA 58.718 45.455 0.00 0.00 0.00 3.41
5175 6759 3.696051 GCATGGCTCCAAATCTTAGTCAA 59.304 43.478 0.00 0.00 0.00 3.18
5176 6760 4.158394 GCATGGCTCCAAATCTTAGTCAAA 59.842 41.667 0.00 0.00 0.00 2.69
5177 6761 5.163478 GCATGGCTCCAAATCTTAGTCAAAT 60.163 40.000 0.00 0.00 0.00 2.32
5178 6762 5.902613 TGGCTCCAAATCTTAGTCAAATG 57.097 39.130 0.00 0.00 0.00 2.32
5179 6763 5.569355 TGGCTCCAAATCTTAGTCAAATGA 58.431 37.500 0.00 0.00 0.00 2.57
5180 6764 6.189859 TGGCTCCAAATCTTAGTCAAATGAT 58.810 36.000 0.00 0.00 0.00 2.45
5181 6765 7.345691 TGGCTCCAAATCTTAGTCAAATGATA 58.654 34.615 0.00 0.00 0.00 2.15
5182 6766 7.500227 TGGCTCCAAATCTTAGTCAAATGATAG 59.500 37.037 0.00 0.00 0.00 2.08
5183 6767 7.716998 GGCTCCAAATCTTAGTCAAATGATAGA 59.283 37.037 0.00 0.00 0.00 1.98
5184 6768 9.113838 GCTCCAAATCTTAGTCAAATGATAGAA 57.886 33.333 0.00 0.00 0.00 2.10
5186 6770 9.958180 TCCAAATCTTAGTCAAATGATAGAACA 57.042 29.630 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.474856 CGTAGTGTCTCAGAACGAGCTC 60.475 54.545 2.73 2.73 41.98 4.09
52 53 2.867793 TACCGGCGAGCACCTACGTA 62.868 60.000 9.30 0.00 0.00 3.57
54 55 3.465296 CTACCGGCGAGCACCTACG 62.465 68.421 9.30 0.00 0.00 3.51
55 56 2.412112 CTACCGGCGAGCACCTAC 59.588 66.667 9.30 0.00 0.00 3.18
56 57 2.831742 CCTACCGGCGAGCACCTA 60.832 66.667 9.30 0.00 0.00 3.08
57 58 4.753662 TCCTACCGGCGAGCACCT 62.754 66.667 9.30 0.00 0.00 4.00
58 59 4.208686 CTCCTACCGGCGAGCACC 62.209 72.222 9.30 0.00 0.00 5.01
62 63 2.262303 CCTAGCTCCTACCGGCGAG 61.262 68.421 9.30 5.27 0.00 5.03
64 65 3.979739 GCCTAGCTCCTACCGGCG 61.980 72.222 0.00 0.00 0.00 6.46
65 66 3.617735 GGCCTAGCTCCTACCGGC 61.618 72.222 0.00 0.00 39.98 6.13
67 68 1.115930 ACATGGCCTAGCTCCTACCG 61.116 60.000 3.32 0.00 0.00 4.02
69 70 1.811941 GCAACATGGCCTAGCTCCTAC 60.812 57.143 3.32 0.00 0.00 3.18
70 71 0.469917 GCAACATGGCCTAGCTCCTA 59.530 55.000 3.32 0.00 0.00 2.94
71 72 1.225704 GCAACATGGCCTAGCTCCT 59.774 57.895 3.32 0.00 0.00 3.69
72 73 1.077501 TGCAACATGGCCTAGCTCC 60.078 57.895 3.32 0.00 0.00 4.70
73 74 1.099879 CCTGCAACATGGCCTAGCTC 61.100 60.000 3.32 0.00 0.00 4.09
86 87 0.599728 GGCGCAAAATTGACCTGCAA 60.600 50.000 10.83 0.00 41.53 4.08
107 108 4.875544 TCGCTATCGCTTTGCTAAATTT 57.124 36.364 0.00 0.00 35.26 1.82
134 135 3.262420 CTCCCGGTGAATGAACTTACAG 58.738 50.000 0.00 0.00 0.00 2.74
314 326 2.411748 CACGCCACATTACTGTACTGTG 59.588 50.000 23.65 23.65 39.93 3.66
331 345 3.357079 CCCTGTGCCAACTCACGC 61.357 66.667 0.00 0.00 39.73 5.34
332 346 1.669115 CTCCCTGTGCCAACTCACG 60.669 63.158 0.00 0.00 39.73 4.35
430 447 2.868583 CGATTCTCCTCCGAACGTACTA 59.131 50.000 0.00 0.00 0.00 1.82
431 448 1.669779 CGATTCTCCTCCGAACGTACT 59.330 52.381 0.00 0.00 0.00 2.73
432 449 1.859197 GCGATTCTCCTCCGAACGTAC 60.859 57.143 0.00 0.00 0.00 3.67
439 456 2.279784 GGCAGCGATTCTCCTCCG 60.280 66.667 0.00 0.00 0.00 4.63
443 460 0.809241 CACTCAGGCAGCGATTCTCC 60.809 60.000 0.00 0.00 0.00 3.71
472 510 1.882623 CAGAAGGGAAGTCAAAGGCAC 59.117 52.381 0.00 0.00 0.00 5.01
476 514 5.582689 ACAAAACAGAAGGGAAGTCAAAG 57.417 39.130 0.00 0.00 0.00 2.77
500 538 5.268118 TGCTCGTCAATGTGAGAGATAAT 57.732 39.130 8.88 0.00 34.04 1.28
525 563 0.868406 GACGTCTCCAAACAGGCAAG 59.132 55.000 8.70 0.00 37.29 4.01
559 599 5.013704 ACTCCCACAGTGTATTGATTTGGTA 59.986 40.000 0.00 0.00 32.26 3.25
572 612 2.571212 TGTAGCAAAACTCCCACAGTG 58.429 47.619 0.00 0.00 34.56 3.66
587 627 1.006832 ATCGAACGGTTGCATGTAGC 58.993 50.000 0.00 0.00 45.96 3.58
591 631 0.718904 TCGAATCGAACGGTTGCATG 59.281 50.000 1.57 0.00 31.06 4.06
592 632 0.999406 CTCGAATCGAACGGTTGCAT 59.001 50.000 6.84 0.00 34.74 3.96
595 636 1.068474 AAGCTCGAATCGAACGGTTG 58.932 50.000 6.84 0.00 34.74 3.77
614 655 1.371467 TCTTTCCTTGCCCAGATCCA 58.629 50.000 0.00 0.00 0.00 3.41
633 674 8.661352 AAACGGATTCTTTGAAAACATTGAAT 57.339 26.923 0.00 0.00 0.00 2.57
634 675 8.485976 AAAACGGATTCTTTGAAAACATTGAA 57.514 26.923 0.00 0.00 0.00 2.69
635 676 7.978975 AGAAAACGGATTCTTTGAAAACATTGA 59.021 29.630 0.00 0.00 36.23 2.57
703 744 8.741841 CCATTTCATGCTCCCATTTTTAAAAAT 58.258 29.630 18.40 18.40 39.07 1.82
781 827 2.046892 GGCCTGTGAGTGACGCAT 60.047 61.111 0.00 0.00 38.38 4.73
833 883 0.908180 GAAACGAGGGAGGGAGGGAA 60.908 60.000 0.00 0.00 0.00 3.97
845 895 2.422127 GAGAGAGAGAGGGTGAAACGAG 59.578 54.545 0.00 0.00 38.12 4.18
846 896 2.040545 AGAGAGAGAGAGGGTGAAACGA 59.959 50.000 0.00 0.00 38.12 3.85
847 897 2.422127 GAGAGAGAGAGAGGGTGAAACG 59.578 54.545 0.00 0.00 38.12 3.60
848 898 2.422127 CGAGAGAGAGAGAGGGTGAAAC 59.578 54.545 0.00 0.00 0.00 2.78
849 899 2.717390 CGAGAGAGAGAGAGGGTGAAA 58.283 52.381 0.00 0.00 0.00 2.69
853 903 0.180406 GAGCGAGAGAGAGAGAGGGT 59.820 60.000 0.00 0.00 0.00 4.34
854 904 0.880278 CGAGCGAGAGAGAGAGAGGG 60.880 65.000 0.00 0.00 0.00 4.30
859 909 1.522806 GGAGCGAGCGAGAGAGAGA 60.523 63.158 0.00 0.00 0.00 3.10
929 1004 2.583685 GATTTCGTGGCTTGGCGCTC 62.584 60.000 7.64 0.00 39.13 5.03
938 1013 1.391933 GGGATTGGGGATTTCGTGGC 61.392 60.000 0.00 0.00 0.00 5.01
949 1024 1.772156 GAGGAGGGAGGGGATTGGG 60.772 68.421 0.00 0.00 0.00 4.12
950 1025 1.772156 GGAGGAGGGAGGGGATTGG 60.772 68.421 0.00 0.00 0.00 3.16
951 1026 2.143419 CGGAGGAGGGAGGGGATTG 61.143 68.421 0.00 0.00 0.00 2.67
952 1027 2.287251 CGGAGGAGGGAGGGGATT 59.713 66.667 0.00 0.00 0.00 3.01
953 1028 4.565850 GCGGAGGAGGGAGGGGAT 62.566 72.222 0.00 0.00 0.00 3.85
1140 1234 3.360340 ACCGTCTCCGTCACCGAC 61.360 66.667 0.00 0.00 35.63 4.79
1143 1237 1.372623 GTTCACCGTCTCCGTCACC 60.373 63.158 0.00 0.00 0.00 4.02
1254 1348 1.693627 AGTAGATCGCCCACTGGTAG 58.306 55.000 0.00 0.00 0.00 3.18
1495 1589 0.391927 CGATTGCGGTGGGAAGGTAA 60.392 55.000 0.00 0.00 0.00 2.85
1496 1590 1.219664 CGATTGCGGTGGGAAGGTA 59.780 57.895 0.00 0.00 0.00 3.08
1497 1591 2.046314 CGATTGCGGTGGGAAGGT 60.046 61.111 0.00 0.00 0.00 3.50
1498 1592 3.508840 GCGATTGCGGTGGGAAGG 61.509 66.667 0.00 0.00 38.16 3.46
1514 1608 0.528684 CGTGATCCCCGAGAGAAAGC 60.529 60.000 0.00 0.00 0.00 3.51
1516 1610 1.956629 GCCGTGATCCCCGAGAGAAA 61.957 60.000 3.67 0.00 0.00 2.52
1545 1639 2.435059 GCAACGGGAGCAGGAGAC 60.435 66.667 0.00 0.00 0.00 3.36
1575 1669 8.369218 ACTGACCAATTGCTTTAAAATGAAAG 57.631 30.769 0.00 0.00 39.09 2.62
1577 1671 7.598493 GCTACTGACCAATTGCTTTAAAATGAA 59.402 33.333 0.00 0.00 0.00 2.57
1613 1716 2.958355 TGTGATCGAGGCTCATCATACA 59.042 45.455 23.15 17.39 31.71 2.29
1618 1721 2.159184 TGAGTTGTGATCGAGGCTCATC 60.159 50.000 15.95 15.74 0.00 2.92
1621 1724 2.593346 ATGAGTTGTGATCGAGGCTC 57.407 50.000 3.87 3.87 0.00 4.70
1622 1725 3.449018 AGTTATGAGTTGTGATCGAGGCT 59.551 43.478 0.00 0.00 0.00 4.58
1623 1726 3.786635 AGTTATGAGTTGTGATCGAGGC 58.213 45.455 0.00 0.00 0.00 4.70
1624 1727 6.860539 CAGATAGTTATGAGTTGTGATCGAGG 59.139 42.308 0.00 0.00 0.00 4.63
1626 1729 7.568199 TCAGATAGTTATGAGTTGTGATCGA 57.432 36.000 0.00 0.00 0.00 3.59
1627 1730 7.864882 ACATCAGATAGTTATGAGTTGTGATCG 59.135 37.037 0.00 0.00 0.00 3.69
1629 1732 8.699130 TCACATCAGATAGTTATGAGTTGTGAT 58.301 33.333 7.27 0.00 39.08 3.06
1630 1733 8.066612 TCACATCAGATAGTTATGAGTTGTGA 57.933 34.615 7.27 7.27 40.49 3.58
1631 1734 8.883954 ATCACATCAGATAGTTATGAGTTGTG 57.116 34.615 0.00 0.00 37.60 3.33
1632 1735 9.539825 GAATCACATCAGATAGTTATGAGTTGT 57.460 33.333 0.00 0.00 0.00 3.32
1633 1736 9.761504 AGAATCACATCAGATAGTTATGAGTTG 57.238 33.333 0.00 0.00 0.00 3.16
1636 1739 9.853555 GGTAGAATCACATCAGATAGTTATGAG 57.146 37.037 0.00 0.00 0.00 2.90
1638 1741 8.515414 TCGGTAGAATCACATCAGATAGTTATG 58.485 37.037 0.00 0.00 0.00 1.90
1639 1742 8.637196 TCGGTAGAATCACATCAGATAGTTAT 57.363 34.615 0.00 0.00 0.00 1.89
1640 1743 8.637196 ATCGGTAGAATCACATCAGATAGTTA 57.363 34.615 0.00 0.00 0.00 2.24
1641 1744 6.961360 TCGGTAGAATCACATCAGATAGTT 57.039 37.500 0.00 0.00 0.00 2.24
1642 1745 7.531857 AATCGGTAGAATCACATCAGATAGT 57.468 36.000 0.00 0.00 0.00 2.12
1643 1746 9.566530 CTAAATCGGTAGAATCACATCAGATAG 57.433 37.037 0.00 0.00 0.00 2.08
1646 1749 6.323996 ACCTAAATCGGTAGAATCACATCAGA 59.676 38.462 0.00 0.00 34.94 3.27
1647 1750 6.516718 ACCTAAATCGGTAGAATCACATCAG 58.483 40.000 0.00 0.00 34.94 2.90
1648 1751 6.323996 AGACCTAAATCGGTAGAATCACATCA 59.676 38.462 0.00 0.00 37.42 3.07
1649 1752 6.642950 CAGACCTAAATCGGTAGAATCACATC 59.357 42.308 0.00 0.00 37.42 3.06
1650 1753 6.098409 ACAGACCTAAATCGGTAGAATCACAT 59.902 38.462 0.00 0.00 37.42 3.21
1653 1756 6.338146 CAACAGACCTAAATCGGTAGAATCA 58.662 40.000 0.00 0.00 37.42 2.57
1654 1757 5.753921 CCAACAGACCTAAATCGGTAGAATC 59.246 44.000 0.00 0.00 37.42 2.52
1655 1758 5.671493 CCAACAGACCTAAATCGGTAGAAT 58.329 41.667 0.00 0.00 37.42 2.40
1656 1759 4.622220 GCCAACAGACCTAAATCGGTAGAA 60.622 45.833 0.00 0.00 37.42 2.10
1657 1760 3.118884 GCCAACAGACCTAAATCGGTAGA 60.119 47.826 0.00 0.00 37.42 2.59
1658 1761 3.195661 GCCAACAGACCTAAATCGGTAG 58.804 50.000 0.00 0.00 37.42 3.18
1659 1762 2.568062 TGCCAACAGACCTAAATCGGTA 59.432 45.455 0.00 0.00 37.42 4.02
1660 1763 1.349688 TGCCAACAGACCTAAATCGGT 59.650 47.619 0.00 0.00 40.80 4.69
1661 1764 2.107950 TGCCAACAGACCTAAATCGG 57.892 50.000 0.00 0.00 0.00 4.18
1662 1765 2.355756 CCATGCCAACAGACCTAAATCG 59.644 50.000 0.00 0.00 0.00 3.34
1663 1766 3.356290 ACCATGCCAACAGACCTAAATC 58.644 45.455 0.00 0.00 0.00 2.17
1664 1767 3.456380 ACCATGCCAACAGACCTAAAT 57.544 42.857 0.00 0.00 0.00 1.40
1665 1768 2.969821 ACCATGCCAACAGACCTAAA 57.030 45.000 0.00 0.00 0.00 1.85
1666 1769 2.375174 AGAACCATGCCAACAGACCTAA 59.625 45.455 0.00 0.00 0.00 2.69
1672 1775 1.503542 GCGAGAACCATGCCAACAG 59.496 57.895 0.00 0.00 0.00 3.16
1706 1809 0.321919 TGTCAGAATCAGCACCTGGC 60.322 55.000 0.00 0.00 45.30 4.85
1714 1817 2.174363 TGGTGCAGTGTCAGAATCAG 57.826 50.000 0.00 0.00 0.00 2.90
1718 1821 4.085357 AGTTATTGGTGCAGTGTCAGAA 57.915 40.909 0.00 0.00 0.00 3.02
1741 1844 4.614946 ACCGTAGCCAATTAGTAATCGAC 58.385 43.478 0.00 0.00 0.00 4.20
1746 1849 5.658190 ACTCCTAACCGTAGCCAATTAGTAA 59.342 40.000 0.00 0.00 0.00 2.24
1747 1850 5.203528 ACTCCTAACCGTAGCCAATTAGTA 58.796 41.667 0.00 0.00 0.00 1.82
1748 1851 4.028825 ACTCCTAACCGTAGCCAATTAGT 58.971 43.478 0.00 0.00 0.00 2.24
1749 1852 4.667519 ACTCCTAACCGTAGCCAATTAG 57.332 45.455 0.00 0.00 0.00 1.73
1750 1853 6.736110 ATAACTCCTAACCGTAGCCAATTA 57.264 37.500 0.00 0.00 0.00 1.40
1760 1863 5.695818 CACAACCAAAATAACTCCTAACCG 58.304 41.667 0.00 0.00 0.00 4.44
1767 1870 4.298332 CCACAGCACAACCAAAATAACTC 58.702 43.478 0.00 0.00 0.00 3.01
1800 1903 2.636830 CTAATCAGTGCACTCCCAAGG 58.363 52.381 18.64 4.64 0.00 3.61
1801 1904 2.237143 TCCTAATCAGTGCACTCCCAAG 59.763 50.000 18.64 12.15 0.00 3.61
1897 2000 5.338953 GCAAGGAATTTAGGGTGGTACTAGT 60.339 44.000 0.00 0.00 0.00 2.57
1995 2755 9.975218 AAACACATTAACCAGGTAAATATCTCT 57.025 29.630 0.00 0.00 0.00 3.10
2006 2766 5.837437 TGTAAAGCAAACACATTAACCAGG 58.163 37.500 0.00 0.00 0.00 4.45
2036 2796 4.778534 AATGTTCAAACAGAGGCTGATG 57.221 40.909 0.00 0.00 43.04 3.07
2039 2799 4.572985 TGAAATGTTCAAACAGAGGCTG 57.427 40.909 0.00 0.00 43.04 4.85
2231 3034 3.058983 TGTGCACAAAGTTGCTAATCTCG 60.059 43.478 19.28 0.00 43.41 4.04
2237 3040 1.675483 CAGGTGTGCACAAAGTTGCTA 59.325 47.619 23.59 0.00 43.41 3.49
2279 3247 0.470766 TACCAGGTGTGTGTTCCCAC 59.529 55.000 0.76 0.00 42.19 4.61
2280 3248 1.214217 TTACCAGGTGTGTGTTCCCA 58.786 50.000 0.76 0.00 0.00 4.37
2281 3249 2.351706 TTTACCAGGTGTGTGTTCCC 57.648 50.000 0.76 0.00 0.00 3.97
2282 3250 3.886505 TCAATTTACCAGGTGTGTGTTCC 59.113 43.478 0.76 0.00 0.00 3.62
2283 3251 5.705609 ATCAATTTACCAGGTGTGTGTTC 57.294 39.130 0.76 0.00 0.00 3.18
2284 3252 7.775053 ATAATCAATTTACCAGGTGTGTGTT 57.225 32.000 0.76 0.00 0.00 3.32
2285 3253 8.325787 TCTATAATCAATTTACCAGGTGTGTGT 58.674 33.333 0.76 0.00 0.00 3.72
2286 3254 8.731275 TCTATAATCAATTTACCAGGTGTGTG 57.269 34.615 0.76 0.00 0.00 3.82
2287 3255 9.747898 TTTCTATAATCAATTTACCAGGTGTGT 57.252 29.630 0.76 0.00 0.00 3.72
2301 3269 9.605955 CGTGTTCACACAAATTTCTATAATCAA 57.394 29.630 10.61 0.00 46.75 2.57
2302 3270 8.994170 TCGTGTTCACACAAATTTCTATAATCA 58.006 29.630 10.61 0.00 46.75 2.57
2303 3271 9.262472 GTCGTGTTCACACAAATTTCTATAATC 57.738 33.333 10.61 0.00 46.75 1.75
2304 3272 8.999431 AGTCGTGTTCACACAAATTTCTATAAT 58.001 29.630 10.61 0.00 46.75 1.28
2305 3273 8.279800 CAGTCGTGTTCACACAAATTTCTATAA 58.720 33.333 10.61 0.00 46.75 0.98
2306 3274 7.095397 CCAGTCGTGTTCACACAAATTTCTATA 60.095 37.037 10.61 0.00 46.75 1.31
2307 3275 6.293407 CCAGTCGTGTTCACACAAATTTCTAT 60.293 38.462 10.61 0.00 46.75 1.98
2308 3276 5.007234 CCAGTCGTGTTCACACAAATTTCTA 59.993 40.000 10.61 0.00 46.75 2.10
2309 3277 4.201910 CCAGTCGTGTTCACACAAATTTCT 60.202 41.667 10.61 0.00 46.75 2.52
2310 3278 4.035017 CCAGTCGTGTTCACACAAATTTC 58.965 43.478 10.61 0.00 46.75 2.17
2311 3279 3.442273 ACCAGTCGTGTTCACACAAATTT 59.558 39.130 10.61 0.00 46.75 1.82
2312 3280 3.013921 ACCAGTCGTGTTCACACAAATT 58.986 40.909 10.61 0.00 46.75 1.82
2313 3281 2.612212 GACCAGTCGTGTTCACACAAAT 59.388 45.455 10.61 0.00 46.75 2.32
2314 3282 2.004017 GACCAGTCGTGTTCACACAAA 58.996 47.619 10.61 0.00 46.75 2.83
2315 3283 1.066787 TGACCAGTCGTGTTCACACAA 60.067 47.619 10.61 0.00 46.75 3.33
2316 3284 0.533032 TGACCAGTCGTGTTCACACA 59.467 50.000 10.61 0.00 46.75 3.72
2411 3746 7.855784 ACCCCTGAAAACAGAAATTAAGATT 57.144 32.000 0.00 0.00 0.00 2.40
2417 3752 9.996554 CTTTTATAACCCCTGAAAACAGAAATT 57.003 29.630 0.00 0.00 0.00 1.82
2456 3792 2.423892 GTCCGATGTCTCAAGAGCAGTA 59.576 50.000 0.00 0.00 0.00 2.74
2510 3846 2.037381 TGATGTTACAACGCCCACAGTA 59.963 45.455 0.00 0.00 0.00 2.74
2540 3876 6.207509 TCTAGAGAATGTGGCCTAGAGTAT 57.792 41.667 3.32 0.00 34.42 2.12
2753 4089 8.378172 TGACAATCTCTTTGATTTCGTTACTT 57.622 30.769 0.00 0.00 43.00 2.24
2801 4137 8.049117 TCAGCATAGAAGAAACATACCTGAAAT 58.951 33.333 0.00 0.00 0.00 2.17
2880 4216 8.210946 AGCCTACAACATAGAGTATTTGCATAA 58.789 33.333 0.00 0.00 0.00 1.90
2885 4221 6.238211 GCACAGCCTACAACATAGAGTATTTG 60.238 42.308 0.00 0.00 0.00 2.32
3196 4532 2.014641 GAGCACATCGAATTGCATCG 57.985 50.000 20.19 3.28 41.48 3.84
3490 4826 5.516339 GCATAATGGGAGATTCAAAACGTTG 59.484 40.000 0.00 0.00 35.95 4.10
3555 4891 9.462174 GAGAACATGACACACAAATGAAAATTA 57.538 29.630 0.00 0.00 0.00 1.40
3577 4913 9.571810 CGGATGAAAATATTGTCAAATTGAGAA 57.428 29.630 12.34 8.01 34.05 2.87
3593 4929 8.750298 ACGTTATAGGATATCTCGGATGAAAAT 58.250 33.333 2.05 0.00 0.00 1.82
3594 4930 8.118976 ACGTTATAGGATATCTCGGATGAAAA 57.881 34.615 2.05 0.00 0.00 2.29
3596 4932 6.882678 TGACGTTATAGGATATCTCGGATGAA 59.117 38.462 2.05 0.00 0.00 2.57
3600 4936 5.802465 ACTGACGTTATAGGATATCTCGGA 58.198 41.667 2.05 0.00 0.00 4.55
3659 4995 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
3660 4996 6.477688 TCTTATATGCGAACTAAAAAGGACCG 59.522 38.462 0.00 0.00 0.00 4.79
3661 4997 7.781548 TCTTATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
3668 5004 9.594478 TCAGTCAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 0.00 1.85
3669 5005 9.594478 TTCAGTCAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 0.00 2.24
3670 5006 9.249457 CTTCAGTCAAATCTTATATGCGAACTA 57.751 33.333 0.00 0.00 0.00 2.24
3671 5007 7.766278 ACTTCAGTCAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 0.00 3.01
3672 5008 7.910304 ACTTCAGTCAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 0.00 3.95
3673 5009 8.131455 GACTTCAGTCAAATCTTATATGCGAA 57.869 34.615 1.86 0.00 44.18 4.70
3674 5010 7.700322 GACTTCAGTCAAATCTTATATGCGA 57.300 36.000 1.86 0.00 44.18 5.10
3689 5025 3.299340 TTACGAGGCTTGACTTCAGTC 57.701 47.619 9.20 0.00 44.97 3.51
3690 5026 3.069729 ACTTTACGAGGCTTGACTTCAGT 59.930 43.478 9.20 0.34 0.00 3.41
3691 5027 3.654414 ACTTTACGAGGCTTGACTTCAG 58.346 45.455 9.20 0.00 0.00 3.02
3692 5028 3.746045 ACTTTACGAGGCTTGACTTCA 57.254 42.857 9.20 0.00 0.00 3.02
3693 5029 4.510340 TCAAACTTTACGAGGCTTGACTTC 59.490 41.667 9.20 0.00 30.70 3.01
3694 5030 4.272748 GTCAAACTTTACGAGGCTTGACTT 59.727 41.667 9.20 0.00 42.80 3.01
3695 5031 3.808174 GTCAAACTTTACGAGGCTTGACT 59.192 43.478 9.20 0.00 42.80 3.41
3696 5032 3.059120 GGTCAAACTTTACGAGGCTTGAC 60.059 47.826 9.20 5.19 44.00 3.18
3697 5033 3.135994 GGTCAAACTTTACGAGGCTTGA 58.864 45.455 9.20 0.00 32.24 3.02
3698 5034 2.875933 TGGTCAAACTTTACGAGGCTTG 59.124 45.455 0.00 0.00 0.00 4.01
3699 5035 3.202829 TGGTCAAACTTTACGAGGCTT 57.797 42.857 0.00 0.00 0.00 4.35
3700 5036 2.876550 GTTGGTCAAACTTTACGAGGCT 59.123 45.455 0.00 0.00 35.75 4.58
3701 5037 3.263602 GTTGGTCAAACTTTACGAGGC 57.736 47.619 0.00 0.00 35.75 4.70
3730 5066 9.442047 TTCAAATTGTGAATGTTGGTACTTTTT 57.558 25.926 0.00 0.00 41.47 1.94
3731 5067 9.442047 TTTCAAATTGTGAATGTTGGTACTTTT 57.558 25.926 0.00 0.00 45.71 2.27
3732 5068 9.612066 ATTTCAAATTGTGAATGTTGGTACTTT 57.388 25.926 0.00 0.00 45.71 2.66
3733 5069 9.260002 GATTTCAAATTGTGAATGTTGGTACTT 57.740 29.630 0.00 0.00 45.71 2.24
3734 5070 8.420222 TGATTTCAAATTGTGAATGTTGGTACT 58.580 29.630 0.00 0.00 45.71 2.73
3735 5071 8.586570 TGATTTCAAATTGTGAATGTTGGTAC 57.413 30.769 0.00 0.00 45.71 3.34
3736 5072 9.775854 ATTGATTTCAAATTGTGAATGTTGGTA 57.224 25.926 0.00 0.00 45.71 3.25
3737 5073 8.680039 ATTGATTTCAAATTGTGAATGTTGGT 57.320 26.923 0.00 0.00 45.71 3.67
3756 5092 8.737175 GCCATGACACATCTATTGATATTGATT 58.263 33.333 0.00 0.00 0.00 2.57
3757 5093 8.107729 AGCCATGACACATCTATTGATATTGAT 58.892 33.333 0.00 0.00 0.00 2.57
3758 5094 7.455891 AGCCATGACACATCTATTGATATTGA 58.544 34.615 0.00 0.00 0.00 2.57
3759 5095 7.683437 AGCCATGACACATCTATTGATATTG 57.317 36.000 0.00 0.00 0.00 1.90
3760 5096 9.797642 TTAAGCCATGACACATCTATTGATATT 57.202 29.630 0.00 0.00 0.00 1.28
3761 5097 9.797642 TTTAAGCCATGACACATCTATTGATAT 57.202 29.630 0.00 0.00 0.00 1.63
3762 5098 9.276590 CTTTAAGCCATGACACATCTATTGATA 57.723 33.333 0.00 0.00 0.00 2.15
3763 5099 7.776969 ACTTTAAGCCATGACACATCTATTGAT 59.223 33.333 0.00 0.00 0.00 2.57
3764 5100 7.112122 ACTTTAAGCCATGACACATCTATTGA 58.888 34.615 0.00 0.00 0.00 2.57
3765 5101 7.325660 ACTTTAAGCCATGACACATCTATTG 57.674 36.000 0.00 0.00 0.00 1.90
3766 5102 7.944729 AACTTTAAGCCATGACACATCTATT 57.055 32.000 0.00 0.00 0.00 1.73
3767 5103 7.611467 TGAAACTTTAAGCCATGACACATCTAT 59.389 33.333 0.00 0.00 0.00 1.98
3768 5104 6.939730 TGAAACTTTAAGCCATGACACATCTA 59.060 34.615 0.00 0.00 0.00 1.98
3769 5105 5.769662 TGAAACTTTAAGCCATGACACATCT 59.230 36.000 0.00 0.00 0.00 2.90
3770 5106 6.012658 TGAAACTTTAAGCCATGACACATC 57.987 37.500 0.00 0.00 0.00 3.06
3771 5107 6.594788 ATGAAACTTTAAGCCATGACACAT 57.405 33.333 0.00 0.00 0.00 3.21
3772 5108 7.701539 ATATGAAACTTTAAGCCATGACACA 57.298 32.000 0.00 0.00 0.00 3.72
3773 5109 8.028938 ACAATATGAAACTTTAAGCCATGACAC 58.971 33.333 0.00 0.00 0.00 3.67
3774 5110 8.121305 ACAATATGAAACTTTAAGCCATGACA 57.879 30.769 0.00 0.00 0.00 3.58
3790 5126 9.348476 TGCCATGCTAAAGTTATACAATATGAA 57.652 29.630 0.00 0.00 0.00 2.57
3791 5127 8.916628 TGCCATGCTAAAGTTATACAATATGA 57.083 30.769 0.00 0.00 0.00 2.15
3792 5128 9.002600 TCTGCCATGCTAAAGTTATACAATATG 57.997 33.333 0.00 0.00 0.00 1.78
3793 5129 9.745018 ATCTGCCATGCTAAAGTTATACAATAT 57.255 29.630 0.00 0.00 0.00 1.28
3794 5130 9.002600 CATCTGCCATGCTAAAGTTATACAATA 57.997 33.333 0.00 0.00 0.00 1.90
3795 5131 7.503566 ACATCTGCCATGCTAAAGTTATACAAT 59.496 33.333 0.00 0.00 0.00 2.71
3796 5132 6.828273 ACATCTGCCATGCTAAAGTTATACAA 59.172 34.615 0.00 0.00 0.00 2.41
3797 5133 6.356556 ACATCTGCCATGCTAAAGTTATACA 58.643 36.000 0.00 0.00 0.00 2.29
3798 5134 6.867662 ACATCTGCCATGCTAAAGTTATAC 57.132 37.500 0.00 0.00 0.00 1.47
3799 5135 7.053498 TCAACATCTGCCATGCTAAAGTTATA 58.947 34.615 0.00 0.00 0.00 0.98
3800 5136 5.887598 TCAACATCTGCCATGCTAAAGTTAT 59.112 36.000 0.00 0.00 0.00 1.89
3801 5137 5.252547 TCAACATCTGCCATGCTAAAGTTA 58.747 37.500 0.00 0.00 0.00 2.24
3802 5138 4.081406 TCAACATCTGCCATGCTAAAGTT 58.919 39.130 0.00 0.00 0.00 2.66
3803 5139 3.689347 TCAACATCTGCCATGCTAAAGT 58.311 40.909 0.00 0.00 0.00 2.66
3804 5140 4.913335 ATCAACATCTGCCATGCTAAAG 57.087 40.909 0.00 0.00 0.00 1.85
3805 5141 6.964807 AATATCAACATCTGCCATGCTAAA 57.035 33.333 0.00 0.00 0.00 1.85
3806 5142 6.964807 AAATATCAACATCTGCCATGCTAA 57.035 33.333 0.00 0.00 0.00 3.09
3807 5143 6.964807 AAAATATCAACATCTGCCATGCTA 57.035 33.333 0.00 0.00 0.00 3.49
3808 5144 5.864418 AAAATATCAACATCTGCCATGCT 57.136 34.783 0.00 0.00 0.00 3.79
3832 5168 9.661563 AGTTGAAGTTTGACCGTATTTATATGA 57.338 29.630 0.00 0.00 0.00 2.15
3836 5172 8.626526 ACAAAGTTGAAGTTTGACCGTATTTAT 58.373 29.630 26.93 2.97 40.11 1.40
3837 5173 7.911205 CACAAAGTTGAAGTTTGACCGTATTTA 59.089 33.333 26.93 0.00 40.11 1.40
3838 5174 6.750039 CACAAAGTTGAAGTTTGACCGTATTT 59.250 34.615 26.93 4.25 40.11 1.40
3839 5175 6.094325 TCACAAAGTTGAAGTTTGACCGTATT 59.906 34.615 26.93 4.90 40.11 1.89
3840 5176 5.587043 TCACAAAGTTGAAGTTTGACCGTAT 59.413 36.000 26.93 5.54 40.11 3.06
3841 5177 4.936411 TCACAAAGTTGAAGTTTGACCGTA 59.064 37.500 26.93 8.52 40.11 4.02
3842 5178 3.754323 TCACAAAGTTGAAGTTTGACCGT 59.246 39.130 26.93 6.51 40.11 4.83
3843 5179 4.349663 TCACAAAGTTGAAGTTTGACCG 57.650 40.909 26.93 16.27 40.11 4.79
3866 5202 9.928236 GCATATTAGAATTCTCTGAAGTCAAAC 57.072 33.333 12.24 0.00 32.70 2.93
3867 5203 9.671279 TGCATATTAGAATTCTCTGAAGTCAAA 57.329 29.630 12.24 0.00 32.70 2.69
3868 5204 9.322773 CTGCATATTAGAATTCTCTGAAGTCAA 57.677 33.333 12.24 0.00 32.70 3.18
3869 5205 8.699130 TCTGCATATTAGAATTCTCTGAAGTCA 58.301 33.333 12.24 3.02 32.70 3.41
3870 5206 9.195411 CTCTGCATATTAGAATTCTCTGAAGTC 57.805 37.037 12.24 0.25 32.70 3.01
3871 5207 8.703743 ACTCTGCATATTAGAATTCTCTGAAGT 58.296 33.333 12.24 7.56 32.70 3.01
3881 5217 9.343539 GGTCCTTTTTACTCTGCATATTAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
3882 5218 7.494625 CGGTCCTTTTTACTCTGCATATTAGAA 59.505 37.037 0.00 0.00 0.00 2.10
3883 5219 6.984474 CGGTCCTTTTTACTCTGCATATTAGA 59.016 38.462 0.00 0.00 0.00 2.10
3884 5220 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
3885 5221 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
3886 5222 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
3887 5223 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
3888 5224 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
3889 5225 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
3890 5226 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
3891 5227 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
3892 5228 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
3893 5229 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
3894 5230 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
3895 5231 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
3896 5232 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
3897 5233 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
3898 5234 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
3899 5235 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
3900 5236 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
3901 5237 0.412640 AAGTACTCCCTCCGGTCCTT 59.587 55.000 0.00 0.00 0.00 3.36
3902 5238 0.324460 CAAGTACTCCCTCCGGTCCT 60.324 60.000 0.00 0.00 0.00 3.85
3903 5239 0.614134 ACAAGTACTCCCTCCGGTCC 60.614 60.000 0.00 0.00 0.00 4.46
3904 5240 2.022934 CTACAAGTACTCCCTCCGGTC 58.977 57.143 0.00 0.00 0.00 4.79
3905 5241 1.637553 TCTACAAGTACTCCCTCCGGT 59.362 52.381 0.00 0.00 0.00 5.28
3906 5242 2.022934 GTCTACAAGTACTCCCTCCGG 58.977 57.143 0.00 0.00 0.00 5.14
3907 5243 2.683867 CAGTCTACAAGTACTCCCTCCG 59.316 54.545 0.00 0.00 0.00 4.63
3908 5244 2.427812 GCAGTCTACAAGTACTCCCTCC 59.572 54.545 0.00 0.00 0.00 4.30
3909 5245 2.427812 GGCAGTCTACAAGTACTCCCTC 59.572 54.545 0.00 0.00 0.00 4.30
3910 5246 2.043252 AGGCAGTCTACAAGTACTCCCT 59.957 50.000 0.00 0.00 28.49 4.20
3911 5247 2.458620 AGGCAGTCTACAAGTACTCCC 58.541 52.381 0.00 0.00 0.00 4.30
3912 5248 4.246458 CAAAGGCAGTCTACAAGTACTCC 58.754 47.826 0.00 0.00 0.00 3.85
3913 5249 3.680458 GCAAAGGCAGTCTACAAGTACTC 59.320 47.826 0.00 0.00 40.72 2.59
3914 5250 3.665190 GCAAAGGCAGTCTACAAGTACT 58.335 45.455 0.00 0.00 40.72 2.73
4095 5431 4.753662 TCCTCGCACCCGGCTACT 62.754 66.667 0.00 0.00 41.67 2.57
4251 5587 3.782046 ACGAATTTATACAGCAGCGACT 58.218 40.909 0.00 0.00 0.00 4.18
4253 5589 5.103687 TGTTACGAATTTATACAGCAGCGA 58.896 37.500 0.00 0.00 0.00 4.93
4278 5614 8.400184 AGAAGATCTGTCACAAAATCAAATGA 57.600 30.769 0.00 0.00 0.00 2.57
4344 5683 4.212213 TCCAACAAAACGGTTATGAACG 57.788 40.909 0.00 0.00 0.00 3.95
4483 5824 2.853731 ATTCTGCGAGACCGAGTTAG 57.146 50.000 0.00 0.00 38.22 2.34
4486 5827 1.752683 AGTATTCTGCGAGACCGAGT 58.247 50.000 0.00 0.00 38.22 4.18
4490 5831 2.293955 GGGAGTAGTATTCTGCGAGACC 59.706 54.545 0.00 0.00 0.00 3.85
4506 5847 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4507 5848 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4508 5849 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
4509 5850 6.769134 AAACAAATATTTAGGAACGGAGGG 57.231 37.500 0.00 0.00 0.00 4.30
4510 5851 8.520351 AGAAAAACAAATATTTAGGAACGGAGG 58.480 33.333 0.00 0.00 0.00 4.30
4537 5878 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
4538 5879 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
4539 5880 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
4540 5881 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
4541 5882 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
4542 5883 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
4543 5884 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
4544 5885 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
4587 5928 6.082338 CAGAGCAAAATGAGTGAATGTACAC 58.918 40.000 0.00 0.00 40.60 2.90
4588 5929 5.764686 ACAGAGCAAAATGAGTGAATGTACA 59.235 36.000 0.00 0.00 0.00 2.90
4589 5930 6.246420 ACAGAGCAAAATGAGTGAATGTAC 57.754 37.500 0.00 0.00 0.00 2.90
4590 5931 7.607607 ACATACAGAGCAAAATGAGTGAATGTA 59.392 33.333 0.00 0.00 0.00 2.29
4591 5932 6.432162 ACATACAGAGCAAAATGAGTGAATGT 59.568 34.615 0.00 0.00 0.00 2.71
4592 5933 6.849502 ACATACAGAGCAAAATGAGTGAATG 58.150 36.000 0.00 0.00 0.00 2.67
4593 5934 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
4594 5935 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
4595 5936 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
4596 5937 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
4597 5938 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
4598 5939 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
4599 5940 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
4600 5941 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
4601 5942 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
4602 5943 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
4603 5944 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
4604 5945 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
4605 5946 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
4606 5947 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
4607 5948 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
4608 5949 7.095229 GCATTTCAACAAGTGACTACATACAGA 60.095 37.037 0.00 0.00 35.39 3.41
4609 5950 7.017645 GCATTTCAACAAGTGACTACATACAG 58.982 38.462 0.00 0.00 35.39 2.74
4610 5951 6.072728 GGCATTTCAACAAGTGACTACATACA 60.073 38.462 0.00 0.00 35.39 2.29
4611 5952 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
4612 5953 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
4613 5954 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
4614 5955 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
4615 5956 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
4616 5957 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
4617 5958 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
4618 5959 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
4619 5960 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
4620 5961 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
4621 5962 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
4622 5963 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
4623 5964 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
4624 5965 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
4625 5966 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
4626 5967 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
4627 5968 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
4629 5970 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
4630 5971 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
4631 5972 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
4632 5973 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
4633 5974 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
4634 5975 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
4635 5976 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
4636 5977 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
4637 5978 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
4638 5979 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
4639 5980 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4640 5981 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4641 5982 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
4642 5983 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
4643 5984 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
4644 5985 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
4645 5986 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
4646 5987 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4647 5988 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
4648 5989 6.183361 CCAAATACTCCCTCCGTTCCTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
4649 5990 5.397559 CCAAATACTCCCTCCGTTCCTAAAT 60.398 44.000 0.00 0.00 0.00 1.40
4650 5991 4.080751 CCAAATACTCCCTCCGTTCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
4651 5992 3.453353 CCAAATACTCCCTCCGTTCCTAA 59.547 47.826 0.00 0.00 0.00 2.69
4652 5993 3.036091 CCAAATACTCCCTCCGTTCCTA 58.964 50.000 0.00 0.00 0.00 2.94
4653 5994 1.838077 CCAAATACTCCCTCCGTTCCT 59.162 52.381 0.00 0.00 0.00 3.36
4654 5995 1.835531 TCCAAATACTCCCTCCGTTCC 59.164 52.381 0.00 0.00 0.00 3.62
4655 5996 3.840124 ATCCAAATACTCCCTCCGTTC 57.160 47.619 0.00 0.00 0.00 3.95
4656 5997 3.265995 ACAATCCAAATACTCCCTCCGTT 59.734 43.478 0.00 0.00 0.00 4.44
4657 5998 2.844348 ACAATCCAAATACTCCCTCCGT 59.156 45.455 0.00 0.00 0.00 4.69
4658 5999 3.560636 ACAATCCAAATACTCCCTCCG 57.439 47.619 0.00 0.00 0.00 4.63
4659 6000 6.187727 TCATACAATCCAAATACTCCCTCC 57.812 41.667 0.00 0.00 0.00 4.30
4660 6001 7.227156 ACATCATACAATCCAAATACTCCCTC 58.773 38.462 0.00 0.00 0.00 4.30
4661 6002 7.154191 ACATCATACAATCCAAATACTCCCT 57.846 36.000 0.00 0.00 0.00 4.20
4662 6003 7.502226 TGAACATCATACAATCCAAATACTCCC 59.498 37.037 0.00 0.00 0.00 4.30
4663 6004 8.450578 TGAACATCATACAATCCAAATACTCC 57.549 34.615 0.00 0.00 0.00 3.85
4726 6067 8.561738 TGACCCAGAGTGTTTATTAGAAATTC 57.438 34.615 0.00 0.00 0.00 2.17
4728 6069 7.918076 TCTGACCCAGAGTGTTTATTAGAAAT 58.082 34.615 0.00 0.00 35.39 2.17
4743 6084 2.269023 ACACCATTCATCTGACCCAGA 58.731 47.619 0.00 0.00 44.99 3.86
4880 6223 8.687824 ATGATAAGCCTTTACGTTCAAAAATG 57.312 30.769 0.00 0.00 0.00 2.32
4886 6229 7.506114 AGGATAATGATAAGCCTTTACGTTCA 58.494 34.615 0.00 0.00 0.00 3.18
5005 6348 4.907875 AGGGCCTGTCTATACACATGTATT 59.092 41.667 4.50 0.00 41.18 1.89
5006 6349 4.493618 AGGGCCTGTCTATACACATGTAT 58.506 43.478 4.50 9.40 43.15 2.29
5059 6402 9.693739 AACATCAATGTATTCCATTTACAGGTA 57.306 29.630 0.00 0.00 41.93 3.08
5060 6403 8.469200 CAACATCAATGTATTCCATTTACAGGT 58.531 33.333 0.00 0.00 41.93 4.00
5062 6405 9.859427 AACAACATCAATGTATTCCATTTACAG 57.141 29.630 0.00 0.00 41.93 2.74
5126 6710 3.545366 AGAAAGGAGGGAGTAAATCGC 57.455 47.619 0.00 0.00 41.11 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.