Multiple sequence alignment - TraesCS5A01G428800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G428800 chr5A 100.000 4860 0 0 1588 6447 613481364 613476505 0.000000e+00 8975.0
1 TraesCS5A01G428800 chr5A 100.000 1148 0 0 1 1148 613482951 613481804 0.000000e+00 2121.0
2 TraesCS5A01G428800 chr5A 94.304 158 9 0 474 631 94081103 94081260 6.460000e-60 243.0
3 TraesCS5A01G428800 chr5A 91.589 107 7 2 4411 4517 435033364 435033260 5.210000e-31 147.0
4 TraesCS5A01G428800 chr5D 87.657 1985 102 61 4510 6447 490999247 490997359 0.000000e+00 2176.0
5 TraesCS5A01G428800 chr5D 93.408 1335 58 17 3108 4417 491000574 490999245 0.000000e+00 1951.0
6 TraesCS5A01G428800 chr5D 89.864 1174 62 9 1981 3103 491001906 491000739 0.000000e+00 1456.0
7 TraesCS5A01G428800 chr5D 91.977 349 19 2 1589 1929 491002549 491002202 1.260000e-131 481.0
8 TraesCS5A01G428800 chr5D 86.697 436 44 6 1 431 491005534 491005108 7.570000e-129 472.0
9 TraesCS5A01G428800 chr5D 90.942 276 11 7 883 1146 491002828 491002555 6.150000e-95 359.0
10 TraesCS5A01G428800 chr5D 79.433 141 17 6 4760 4889 9943895 9944034 8.900000e-14 89.8
11 TraesCS5A01G428800 chr5D 95.238 42 2 0 255 296 528829053 528829094 4.170000e-07 67.6
12 TraesCS5A01G428800 chr5B 88.729 1322 78 23 1947 3225 605789710 605788417 0.000000e+00 1550.0
13 TraesCS5A01G428800 chr5B 92.194 1012 50 13 4510 5496 605786820 605785813 0.000000e+00 1404.0
14 TraesCS5A01G428800 chr5B 87.828 953 50 23 5544 6447 605785811 605784876 0.000000e+00 1057.0
15 TraesCS5A01G428800 chr5B 92.472 704 30 6 3261 3942 605788069 605787367 0.000000e+00 985.0
16 TraesCS5A01G428800 chr5B 90.993 433 31 5 1 426 605792368 605791937 1.560000e-160 577.0
17 TraesCS5A01G428800 chr5B 89.095 486 20 14 3944 4417 605787282 605786818 2.020000e-159 573.0
18 TraesCS5A01G428800 chr5B 84.690 516 36 19 640 1146 605790584 605790103 5.850000e-130 475.0
19 TraesCS5A01G428800 chr5B 86.719 384 23 6 1588 1960 605790094 605789728 1.010000e-107 401.0
20 TraesCS5A01G428800 chr5B 93.204 103 7 0 4412 4514 425880220 425880118 1.120000e-32 152.0
21 TraesCS5A01G428800 chr5B 78.014 141 19 6 4760 4889 10099712 10099851 1.930000e-10 78.7
22 TraesCS5A01G428800 chr5B 94.118 51 3 0 254 304 696197445 696197395 1.930000e-10 78.7
23 TraesCS5A01G428800 chr5B 95.238 42 2 0 255 296 665976706 665976747 4.170000e-07 67.6
24 TraesCS5A01G428800 chr2A 94.340 159 8 1 474 631 150181371 150181529 6.460000e-60 243.0
25 TraesCS5A01G428800 chr2A 94.304 158 9 0 474 631 735757047 735757204 6.460000e-60 243.0
26 TraesCS5A01G428800 chr7A 93.711 159 9 1 473 631 345229928 345229771 3.000000e-58 237.0
27 TraesCS5A01G428800 chr7A 90.090 111 9 2 4406 4516 645464658 645464550 6.740000e-30 143.0
28 TraesCS5A01G428800 chr7A 79.104 134 18 6 4763 4888 19262327 19262196 4.140000e-12 84.2
29 TraesCS5A01G428800 chr3B 93.671 158 10 0 474 631 11551931 11552088 3.000000e-58 237.0
30 TraesCS5A01G428800 chr3B 91.964 112 8 1 4416 4527 110452068 110451958 8.650000e-34 156.0
31 TraesCS5A01G428800 chr3B 92.381 105 6 2 4413 4516 171174194 171174297 1.450000e-31 148.0
32 TraesCS5A01G428800 chr3A 94.737 152 8 0 480 631 416310271 416310120 3.000000e-58 237.0
33 TraesCS5A01G428800 chr3A 86.957 207 26 1 3380 3585 155061715 155061509 1.400000e-56 231.0
34 TraesCS5A01G428800 chr6A 94.737 152 7 1 480 631 359051150 359051000 1.080000e-57 235.0
35 TraesCS5A01G428800 chr1A 94.737 152 7 1 480 631 261368584 261368434 1.080000e-57 235.0
36 TraesCS5A01G428800 chr1A 93.671 158 9 1 474 631 282546336 282546492 1.080000e-57 235.0
37 TraesCS5A01G428800 chr1A 94.000 50 2 1 255 304 473033760 473033808 2.490000e-09 75.0
38 TraesCS5A01G428800 chr4D 93.458 107 5 2 4411 4515 93339351 93339457 2.410000e-34 158.0
39 TraesCS5A01G428800 chr7D 93.137 102 7 0 4412 4513 474338822 474338721 4.030000e-32 150.0
40 TraesCS5A01G428800 chr7D 83.088 136 11 3 4754 4877 34373330 34373465 5.280000e-21 113.0
41 TraesCS5A01G428800 chr7D 83.088 136 11 3 4754 4877 34757006 34756871 5.280000e-21 113.0
42 TraesCS5A01G428800 chr4B 84.756 164 8 5 4732 4884 78607771 78607614 1.450000e-31 148.0
43 TraesCS5A01G428800 chr6D 90.909 110 9 1 4403 4512 464266173 464266281 5.210000e-31 147.0
44 TraesCS5A01G428800 chr6D 82.895 152 11 8 4760 4898 147883870 147883721 8.780000e-24 122.0
45 TraesCS5A01G428800 chr3D 91.667 108 5 4 4407 4513 177818873 177818769 5.210000e-31 147.0
46 TraesCS5A01G428800 chr3D 97.619 42 1 0 255 296 26450346 26450387 8.970000e-09 73.1
47 TraesCS5A01G428800 chr4A 83.704 135 11 2 4754 4877 690411302 690411436 4.080000e-22 117.0
48 TraesCS5A01G428800 chr7B 93.590 78 4 1 4802 4878 59069283 59069360 1.470000e-21 115.0
49 TraesCS5A01G428800 chr7B 89.655 58 4 2 253 310 645325290 645325235 8.970000e-09 73.1
50 TraesCS5A01G428800 chr7B 93.617 47 2 1 254 300 137515670 137515625 1.160000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G428800 chr5A 613476505 613482951 6446 True 5548.000000 8975 100.000000 1 6447 2 chr5A.!!$R2 6446
1 TraesCS5A01G428800 chr5D 490997359 491005534 8175 True 1149.166667 2176 90.090833 1 6447 6 chr5D.!!$R1 6446
2 TraesCS5A01G428800 chr5B 605784876 605792368 7492 True 877.750000 1550 89.090000 1 6447 8 chr5B.!!$R3 6446

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 2416 0.608308 GGTCTGCGGTTTAGGGCTTT 60.608 55.0 0.00 0.0 0.00 3.51 F
1932 3907 0.031449 GCAAGCTAGCTAGTCCTCGG 59.969 60.0 19.70 8.6 0.00 4.63 F
2160 4379 0.108186 TGACAGGTCCATGTGATCGC 60.108 55.0 0.00 0.0 32.25 4.58 F
3231 5684 0.885879 AAGCAGTGACACCGATACGA 59.114 50.0 0.84 0.0 0.00 3.43 F
3826 6634 0.314302 AAGTTCTCGGTGTCGGTGAG 59.686 55.0 0.00 0.0 36.95 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 4269 0.392461 AACACACAACTCCACGTGCT 60.392 50.0 10.91 0.0 36.57 4.40 R
3223 5676 0.109873 GTCGCTGGGTATCGTATCGG 60.110 60.0 0.00 0.0 0.00 4.18 R
3814 6622 0.179161 CTAGCTTCTCACCGACACCG 60.179 60.0 0.00 0.0 0.00 4.94 R
5042 7968 0.249955 CCCCAATCACAATGGCAACC 59.750 55.0 0.00 0.0 36.58 3.77 R
5451 8380 0.523072 AATGCTGTCGAACATGGCAC 59.477 50.0 0.00 0.0 33.12 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 5.010314 TCAAAGCTCGAACTAACAAGTCCTA 59.990 40.000 0.00 0.00 0.00 2.94
30 32 5.464030 AGCTCGAACTAACAAGTCCTAAA 57.536 39.130 0.00 0.00 0.00 1.85
62 69 3.351740 TGCTTCCGGAAAATCTGCAATA 58.648 40.909 21.73 3.25 0.00 1.90
94 101 4.190772 CAGTTTTGAAGTGGCAACCAAAT 58.809 39.130 9.83 0.00 34.18 2.32
97 104 5.362430 AGTTTTGAAGTGGCAACCAAATAGA 59.638 36.000 9.83 0.00 34.18 1.98
200 208 6.783708 AACAAATGGTCAAGTTTGAACCTA 57.216 33.333 7.39 0.00 44.20 3.08
232 240 3.181501 CGCCATCAATTGTTACGGAACAT 60.182 43.478 15.33 0.00 44.96 2.71
233 241 4.104776 GCCATCAATTGTTACGGAACATG 58.895 43.478 15.33 10.98 44.96 3.21
242 250 6.438259 TTGTTACGGAACATGAAAACAAGA 57.562 33.333 15.33 0.00 44.96 3.02
245 253 2.289547 ACGGAACATGAAAACAAGACCG 59.710 45.455 0.00 0.00 42.78 4.79
252 260 6.056428 ACATGAAAACAAGACCGTAACTTC 57.944 37.500 0.00 0.00 0.00 3.01
340 349 7.489757 GCTTACCTAAGGAAGCATATATTCGAG 59.510 40.741 13.89 0.00 45.99 4.04
371 380 9.379791 AGGAGTACATAACTTTGTAATAAGCAC 57.620 33.333 0.00 0.00 39.07 4.40
400 409 3.260884 TCGATCACCTAAGGAAGCAACTT 59.739 43.478 0.00 0.00 0.00 2.66
428 437 5.243283 AGCTTCTAAGAACTCACCGTTAAGA 59.757 40.000 0.00 0.00 35.56 2.10
429 438 5.573669 GCTTCTAAGAACTCACCGTTAAGAG 59.426 44.000 0.00 0.00 35.56 2.85
430 439 5.056894 TCTAAGAACTCACCGTTAAGAGC 57.943 43.478 0.00 0.00 35.56 4.09
431 440 4.765856 TCTAAGAACTCACCGTTAAGAGCT 59.234 41.667 0.00 0.00 35.56 4.09
432 441 4.338379 AAGAACTCACCGTTAAGAGCTT 57.662 40.909 0.00 0.00 35.56 3.74
433 442 3.915536 AGAACTCACCGTTAAGAGCTTC 58.084 45.455 0.00 0.00 35.56 3.86
435 444 4.765856 AGAACTCACCGTTAAGAGCTTCTA 59.234 41.667 0.00 0.00 35.56 2.10
436 445 5.243283 AGAACTCACCGTTAAGAGCTTCTAA 59.757 40.000 0.00 0.00 35.56 2.10
437 446 5.061920 ACTCACCGTTAAGAGCTTCTAAG 57.938 43.478 0.00 0.00 35.28 2.18
439 1866 5.243283 ACTCACCGTTAAGAGCTTCTAAGAA 59.757 40.000 0.00 0.00 35.28 2.52
442 1869 5.118817 CACCGTTAAGAGCTTCTAAGAACAC 59.881 44.000 0.00 0.00 0.00 3.32
445 1872 6.369065 CCGTTAAGAGCTTCTAAGAACACAAT 59.631 38.462 0.00 0.00 0.00 2.71
446 1873 7.412020 CCGTTAAGAGCTTCTAAGAACACAATC 60.412 40.741 0.00 0.00 0.00 2.67
449 1876 5.971763 AGAGCTTCTAAGAACACAATCGAT 58.028 37.500 0.00 0.00 0.00 3.59
450 1877 6.039616 AGAGCTTCTAAGAACACAATCGATC 58.960 40.000 0.00 0.00 0.00 3.69
454 1881 6.507141 GCTTCTAAGAACACAATCGATCGAAG 60.507 42.308 23.50 19.38 0.00 3.79
455 1882 5.950883 TCTAAGAACACAATCGATCGAAGT 58.049 37.500 23.50 20.05 0.00 3.01
458 1885 5.517037 AGAACACAATCGATCGAAGTTTC 57.483 39.130 23.50 23.00 0.00 2.78
459 1886 4.988540 AGAACACAATCGATCGAAGTTTCA 59.011 37.500 23.50 0.00 0.00 2.69
460 1887 4.910746 ACACAATCGATCGAAGTTTCAG 57.089 40.909 23.50 13.31 0.00 3.02
462 1889 3.679980 CACAATCGATCGAAGTTTCAGGT 59.320 43.478 23.50 8.46 0.00 4.00
478 1905 5.473796 TTCAGGTGAAACGAACAAGTAAC 57.526 39.130 0.00 0.00 38.12 2.50
480 1907 4.807304 TCAGGTGAAACGAACAAGTAACTC 59.193 41.667 0.00 0.00 38.12 3.01
481 1908 4.809426 CAGGTGAAACGAACAAGTAACTCT 59.191 41.667 0.00 0.00 38.12 3.24
482 1909 5.293569 CAGGTGAAACGAACAAGTAACTCTT 59.706 40.000 0.00 0.00 38.12 2.85
483 1910 5.522824 AGGTGAAACGAACAAGTAACTCTTC 59.477 40.000 0.00 0.00 38.12 2.87
485 1912 5.522824 GTGAAACGAACAAGTAACTCTTCCT 59.477 40.000 0.00 0.00 33.63 3.36
488 1915 7.597743 TGAAACGAACAAGTAACTCTTCCTATC 59.402 37.037 0.00 0.00 33.63 2.08
489 1916 5.963594 ACGAACAAGTAACTCTTCCTATCC 58.036 41.667 0.00 0.00 33.63 2.59
490 1917 5.715753 ACGAACAAGTAACTCTTCCTATCCT 59.284 40.000 0.00 0.00 33.63 3.24
491 1918 6.127675 ACGAACAAGTAACTCTTCCTATCCTC 60.128 42.308 0.00 0.00 33.63 3.71
492 1919 6.547930 AACAAGTAACTCTTCCTATCCTCC 57.452 41.667 0.00 0.00 33.63 4.30
494 1921 5.422650 ACAAGTAACTCTTCCTATCCTCCAC 59.577 44.000 0.00 0.00 33.63 4.02
495 1922 5.208294 AGTAACTCTTCCTATCCTCCACA 57.792 43.478 0.00 0.00 0.00 4.17
496 1923 5.782925 AGTAACTCTTCCTATCCTCCACAT 58.217 41.667 0.00 0.00 0.00 3.21
497 1924 6.206042 AGTAACTCTTCCTATCCTCCACATT 58.794 40.000 0.00 0.00 0.00 2.71
498 1925 6.674419 AGTAACTCTTCCTATCCTCCACATTT 59.326 38.462 0.00 0.00 0.00 2.32
499 1926 5.622346 ACTCTTCCTATCCTCCACATTTC 57.378 43.478 0.00 0.00 0.00 2.17
501 1928 5.669447 ACTCTTCCTATCCTCCACATTTCAT 59.331 40.000 0.00 0.00 0.00 2.57
508 2012 8.556589 TCCTATCCTCCACATTTCATAGAAAAA 58.443 33.333 0.00 0.00 0.00 1.94
509 2013 9.359653 CCTATCCTCCACATTTCATAGAAAAAT 57.640 33.333 0.00 0.00 0.00 1.82
563 2067 6.452757 TCCTATGATATGAATCAAAGGGCA 57.547 37.500 0.00 0.00 45.12 5.36
564 2068 7.036154 TCCTATGATATGAATCAAAGGGCAT 57.964 36.000 0.00 0.00 45.12 4.40
565 2069 7.114754 TCCTATGATATGAATCAAAGGGCATC 58.885 38.462 0.00 0.00 45.12 3.91
566 2070 7.037080 TCCTATGATATGAATCAAAGGGCATCT 60.037 37.037 0.00 0.00 45.12 2.90
568 2072 6.196918 TGATATGAATCAAAGGGCATCTCT 57.803 37.500 0.00 0.00 39.20 3.10
569 2073 6.607970 TGATATGAATCAAAGGGCATCTCTT 58.392 36.000 0.00 0.00 39.20 2.85
570 2074 7.064866 TGATATGAATCAAAGGGCATCTCTTT 58.935 34.615 0.00 0.00 39.20 2.52
571 2075 7.562454 TGATATGAATCAAAGGGCATCTCTTTT 59.438 33.333 0.00 0.00 39.20 2.27
572 2076 6.616237 ATGAATCAAAGGGCATCTCTTTTT 57.384 33.333 0.00 0.00 32.72 1.94
573 2077 6.029346 TGAATCAAAGGGCATCTCTTTTTC 57.971 37.500 0.00 0.00 32.72 2.29
574 2078 5.776716 TGAATCAAAGGGCATCTCTTTTTCT 59.223 36.000 5.65 0.00 32.72 2.52
575 2079 6.947733 TGAATCAAAGGGCATCTCTTTTTCTA 59.052 34.615 5.65 0.00 32.72 2.10
576 2080 7.616935 TGAATCAAAGGGCATCTCTTTTTCTAT 59.383 33.333 5.65 0.00 32.72 1.98
577 2081 7.968014 ATCAAAGGGCATCTCTTTTTCTATT 57.032 32.000 0.00 0.00 32.72 1.73
578 2082 7.396540 TCAAAGGGCATCTCTTTTTCTATTC 57.603 36.000 0.00 0.00 32.72 1.75
579 2083 6.378280 TCAAAGGGCATCTCTTTTTCTATTCC 59.622 38.462 0.00 0.00 32.72 3.01
580 2084 5.723860 AGGGCATCTCTTTTTCTATTCCT 57.276 39.130 0.00 0.00 0.00 3.36
582 2086 7.399674 AGGGCATCTCTTTTTCTATTCCTAT 57.600 36.000 0.00 0.00 0.00 2.57
583 2087 7.230027 AGGGCATCTCTTTTTCTATTCCTATG 58.770 38.462 0.00 0.00 0.00 2.23
584 2088 6.072230 GGGCATCTCTTTTTCTATTCCTATGC 60.072 42.308 0.00 0.00 36.22 3.14
585 2089 6.488006 GGCATCTCTTTTTCTATTCCTATGCA 59.512 38.462 0.00 0.00 38.14 3.96
586 2090 7.176340 GGCATCTCTTTTTCTATTCCTATGCAT 59.824 37.037 3.79 3.79 38.14 3.96
587 2091 9.224267 GCATCTCTTTTTCTATTCCTATGCATA 57.776 33.333 6.20 6.20 36.79 3.14
600 2104 7.444629 TTCCTATGCATAGAATTTGAGATGC 57.555 36.000 31.14 0.00 44.00 3.91
606 2110 6.068473 GCATAGAATTTGAGATGCATGTCA 57.932 37.500 21.70 21.70 43.36 3.58
621 2125 5.932455 TGCATGTCATCTCATTTCCTATGA 58.068 37.500 0.00 0.00 0.00 2.15
623 2127 5.996513 GCATGTCATCTCATTTCCTATGACT 59.003 40.000 13.59 0.19 45.40 3.41
624 2128 6.485984 GCATGTCATCTCATTTCCTATGACTT 59.514 38.462 13.59 6.42 45.40 3.01
625 2129 7.013083 GCATGTCATCTCATTTCCTATGACTTT 59.987 37.037 13.59 1.75 45.40 2.66
626 2130 8.900781 CATGTCATCTCATTTCCTATGACTTTT 58.099 33.333 13.59 0.00 45.40 2.27
628 2132 8.324306 TGTCATCTCATTTCCTATGACTTTTCT 58.676 33.333 13.59 0.00 45.40 2.52
652 2341 2.631160 TTTTCCCTGAGTTTCTGCGA 57.369 45.000 0.00 0.00 0.00 5.10
660 2349 1.272781 GAGTTTCTGCGATCCTCACG 58.727 55.000 0.00 0.00 0.00 4.35
684 2373 1.295423 GTGAGTTCTTAGGCGGCCA 59.705 57.895 23.09 4.27 0.00 5.36
700 2389 1.678635 CCAATCAAGAAGCCCGCCA 60.679 57.895 0.00 0.00 0.00 5.69
727 2416 0.608308 GGTCTGCGGTTTAGGGCTTT 60.608 55.000 0.00 0.00 0.00 3.51
865 2783 1.669760 CTGTACCTGCCGCGGAAAA 60.670 57.895 33.48 12.84 0.00 2.29
1075 3035 2.905807 CGACCCCGGCGATCTACTC 61.906 68.421 9.30 0.00 0.00 2.59
1082 3042 2.203451 GCGATCTACTCCCCCGGA 60.203 66.667 0.73 0.00 0.00 5.14
1131 3091 3.366739 CTCTTCCCACCGTACGCCC 62.367 68.421 10.49 0.00 0.00 6.13
1640 3605 1.167155 TCTAGCTCGTCCAGATCCGC 61.167 60.000 0.00 0.00 0.00 5.54
1708 3682 0.745468 CTACCGGTTGCTCCTAGGAC 59.255 60.000 15.04 5.90 0.00 3.85
1782 3756 2.202518 CAGCTTCGCGCCCAATTG 60.203 61.111 0.00 0.00 40.39 2.32
1830 3804 2.634982 TCGTAGTGGTTTAATCGCGT 57.365 45.000 5.77 0.00 0.00 6.01
1899 3874 2.608752 GGAAATTGTGCCTGCTGTTGAG 60.609 50.000 0.00 0.00 0.00 3.02
1925 3900 2.280457 GGCGGGCAAGCTAGCTAG 60.280 66.667 19.70 16.84 37.29 3.42
1932 3907 0.031449 GCAAGCTAGCTAGTCCTCGG 59.969 60.000 19.70 8.60 0.00 4.63
1940 3915 1.706305 AGCTAGTCCTCGGGCTACTAT 59.294 52.381 0.00 0.00 32.94 2.12
1949 3924 1.686325 CGGGCTACTATGTGGGCTGT 61.686 60.000 7.98 0.00 40.13 4.40
1953 3960 2.355716 GGCTACTATGTGGGCTGTTTGA 60.356 50.000 0.77 0.00 36.71 2.69
1971 3978 4.760530 TTGATTGAGTGATAGGAGGTGG 57.239 45.455 0.00 0.00 0.00 4.61
1972 3979 3.994317 TGATTGAGTGATAGGAGGTGGA 58.006 45.455 0.00 0.00 0.00 4.02
1973 3980 4.560739 TGATTGAGTGATAGGAGGTGGAT 58.439 43.478 0.00 0.00 0.00 3.41
1976 3983 1.974236 GAGTGATAGGAGGTGGATGGG 59.026 57.143 0.00 0.00 0.00 4.00
1977 3984 1.295292 AGTGATAGGAGGTGGATGGGT 59.705 52.381 0.00 0.00 0.00 4.51
1978 3985 1.417890 GTGATAGGAGGTGGATGGGTG 59.582 57.143 0.00 0.00 0.00 4.61
2018 4237 6.413892 TGTGATGTAGATTTATGCAGGACAA 58.586 36.000 0.00 0.00 0.00 3.18
2144 4363 9.770503 GATCATTTGCATAGTTCATCATATGAC 57.229 33.333 7.78 0.00 39.39 3.06
2155 4374 4.964593 TCATCATATGACAGGTCCATGTG 58.035 43.478 7.78 0.00 35.37 3.21
2160 4379 0.108186 TGACAGGTCCATGTGATCGC 60.108 55.000 0.00 0.00 32.25 4.58
2184 4403 5.365619 CCGTATCTAATGCTTTGGGTACTT 58.634 41.667 14.46 0.00 30.06 2.24
2195 4414 2.160721 TGGGTACTTAGAGCAGGAGG 57.839 55.000 0.00 0.00 0.00 4.30
2212 4431 2.466846 GAGGGGGTTTATGCATGGTTT 58.533 47.619 10.16 0.00 0.00 3.27
2213 4432 2.837591 GAGGGGGTTTATGCATGGTTTT 59.162 45.455 10.16 0.00 0.00 2.43
2266 4494 5.352284 TGCGCCTTCACTTTTTAAATTCAA 58.648 33.333 4.18 0.00 0.00 2.69
2271 4499 8.690840 CGCCTTCACTTTTTAAATTCAAGTTAG 58.309 33.333 1.78 3.43 0.00 2.34
2299 4527 3.390135 AGATGTGTTGTACGTGAACTGG 58.610 45.455 0.00 0.00 0.00 4.00
2310 4538 2.997986 ACGTGAACTGGGTAATTTAGCG 59.002 45.455 0.00 0.00 0.00 4.26
2323 4551 5.354792 GGTAATTTAGCGTGGTAATGTTCCA 59.645 40.000 0.00 0.00 0.00 3.53
2324 4552 5.560966 AATTTAGCGTGGTAATGTTCCAG 57.439 39.130 0.00 0.00 35.49 3.86
2342 4597 4.917385 TCCAGCTGCACCTTCTAAATTTA 58.083 39.130 8.66 0.00 0.00 1.40
2343 4598 4.700213 TCCAGCTGCACCTTCTAAATTTAC 59.300 41.667 8.66 0.00 0.00 2.01
2393 4648 7.749126 GTGAACTAAGTAATTTAGCATGCGTTT 59.251 33.333 13.01 7.31 42.12 3.60
2542 4811 9.850198 ATGCCATTTTTAGTTGCCATTAAATAT 57.150 25.926 0.00 0.00 0.00 1.28
2582 4852 3.084786 GCACCTTGCTAGTGATTCCTTT 58.915 45.455 5.66 0.00 40.96 3.11
2595 4865 9.918630 CTAGTGATTCCTTTTGTGAATTTGAAT 57.081 29.630 0.00 0.00 32.74 2.57
2630 4906 5.428253 TGTTCCATTAGGATTGCTACTGTC 58.572 41.667 2.68 0.00 45.26 3.51
2706 4983 6.694447 AGAAATTTTGATATGTGCTGTGCTT 58.306 32.000 0.00 0.00 0.00 3.91
2713 4990 7.806409 TTGATATGTGCTGTGCTTAATGTAT 57.194 32.000 0.00 0.00 0.00 2.29
2714 4991 8.900983 TTGATATGTGCTGTGCTTAATGTATA 57.099 30.769 0.00 0.00 0.00 1.47
2758 5035 5.181748 GGACTATGACTGAAGCACTCATTT 58.818 41.667 0.00 0.00 32.14 2.32
2819 5098 6.469410 TGTATAGTTTGTAGTGGTTTCTGGG 58.531 40.000 0.00 0.00 0.00 4.45
2855 5134 3.273434 GGTGAAGCTGACAATGATAGCA 58.727 45.455 13.67 0.00 39.84 3.49
2864 5143 2.346803 ACAATGATAGCACGTGTCACC 58.653 47.619 18.38 5.38 0.00 4.02
3037 5316 9.981114 CTTTTTCCAGTATCCTTTGTTAATTGT 57.019 29.630 0.00 0.00 0.00 2.71
3055 5334 9.362539 GTTAATTGTAGTCTATTTTCTGTCCGA 57.637 33.333 0.00 0.00 0.00 4.55
3156 5600 1.091771 GCATGCTTTCGCTAGCCAGA 61.092 55.000 11.37 0.00 40.49 3.86
3178 5622 7.920151 CCAGAATCTGTATTGTTTTGTTGACAA 59.080 33.333 9.63 0.00 40.86 3.18
3179 5623 9.467258 CAGAATCTGTATTGTTTTGTTGACAAT 57.533 29.630 1.31 7.51 46.34 2.71
3190 5643 8.190888 TGTTTTGTTGACAATATTTGTTGACC 57.809 30.769 0.00 0.00 45.52 4.02
3218 5671 6.714810 TCATGGACTACATTTAAACAAGCAGT 59.285 34.615 0.00 0.00 37.84 4.40
3219 5672 6.312399 TGGACTACATTTAAACAAGCAGTG 57.688 37.500 0.00 0.00 0.00 3.66
3220 5673 6.058833 TGGACTACATTTAAACAAGCAGTGA 58.941 36.000 0.00 0.00 0.00 3.41
3221 5674 6.017440 TGGACTACATTTAAACAAGCAGTGAC 60.017 38.462 0.00 0.00 0.00 3.67
3222 5675 6.017440 GGACTACATTTAAACAAGCAGTGACA 60.017 38.462 0.00 0.00 0.00 3.58
3223 5676 6.725246 ACTACATTTAAACAAGCAGTGACAC 58.275 36.000 0.00 0.00 0.00 3.67
3224 5677 4.932146 ACATTTAAACAAGCAGTGACACC 58.068 39.130 0.84 0.00 0.00 4.16
3225 5678 3.684103 TTTAAACAAGCAGTGACACCG 57.316 42.857 0.84 0.00 0.00 4.94
3226 5679 2.605837 TAAACAAGCAGTGACACCGA 57.394 45.000 0.84 0.00 0.00 4.69
3227 5680 1.967319 AAACAAGCAGTGACACCGAT 58.033 45.000 0.84 0.00 0.00 4.18
3228 5681 2.831685 AACAAGCAGTGACACCGATA 57.168 45.000 0.84 0.00 0.00 2.92
3229 5682 2.080286 ACAAGCAGTGACACCGATAC 57.920 50.000 0.84 0.00 0.00 2.24
3230 5683 0.992072 CAAGCAGTGACACCGATACG 59.008 55.000 0.84 0.00 0.00 3.06
3231 5684 0.885879 AAGCAGTGACACCGATACGA 59.114 50.000 0.84 0.00 0.00 3.43
3232 5685 1.103803 AGCAGTGACACCGATACGAT 58.896 50.000 0.84 0.00 0.00 3.73
3233 5686 2.294979 AGCAGTGACACCGATACGATA 58.705 47.619 0.84 0.00 0.00 2.92
3234 5687 2.033049 AGCAGTGACACCGATACGATAC 59.967 50.000 0.84 0.00 0.00 2.24
3235 5688 2.857489 GCAGTGACACCGATACGATACC 60.857 54.545 0.84 0.00 0.00 2.73
3236 5689 1.952296 AGTGACACCGATACGATACCC 59.048 52.381 0.84 0.00 0.00 3.69
3237 5690 1.677576 GTGACACCGATACGATACCCA 59.322 52.381 0.00 0.00 0.00 4.51
3238 5691 1.951602 TGACACCGATACGATACCCAG 59.048 52.381 0.00 0.00 0.00 4.45
3566 6374 4.765339 AGGCCTTACGCTTTCATTAAGTTT 59.235 37.500 0.00 0.00 36.19 2.66
3657 6465 2.896685 ACCCTCTCACTCTCAAGTTCTG 59.103 50.000 0.00 0.00 31.71 3.02
3814 6622 4.212214 ACTCGCAATGTTCAAGAAGTTCTC 59.788 41.667 5.70 0.00 0.00 2.87
3826 6634 0.314302 AAGTTCTCGGTGTCGGTGAG 59.686 55.000 0.00 0.00 36.95 3.51
3846 6654 5.294799 GTGAGAAGCTAGATCGTAAGTCTGA 59.705 44.000 0.00 0.00 39.48 3.27
3862 6670 7.095439 CGTAAGTCTGAAAATCTCTCTTGCTTT 60.095 37.037 0.00 0.00 0.00 3.51
3877 6685 8.165239 TCTCTTGCTTTTACTGCTTCATTTAA 57.835 30.769 0.00 0.00 0.00 1.52
3879 6687 8.746922 TCTTGCTTTTACTGCTTCATTTAATG 57.253 30.769 0.00 0.00 0.00 1.90
3916 6724 9.490379 GAGAAACGGGTAGATGTTTATATCATT 57.510 33.333 0.00 0.00 38.35 2.57
4036 6929 2.638480 AGCTTTACTTCTGGTGCACA 57.362 45.000 20.43 3.92 0.00 4.57
4037 6930 2.930950 AGCTTTACTTCTGGTGCACAA 58.069 42.857 20.43 6.43 0.00 3.33
4074 6967 5.514279 CGTTTTCAAGATGCTTCCCATATC 58.486 41.667 0.00 0.00 33.29 1.63
4327 7228 5.769484 TTCTCCATCGTAGTCAGGAATAC 57.231 43.478 0.00 0.00 0.00 1.89
4335 7237 6.978343 TCGTAGTCAGGAATACCATTTTTG 57.022 37.500 1.77 0.00 38.94 2.44
4339 7241 8.079809 CGTAGTCAGGAATACCATTTTTGTTTT 58.920 33.333 1.77 0.00 38.94 2.43
4340 7242 9.191995 GTAGTCAGGAATACCATTTTTGTTTTG 57.808 33.333 0.00 0.00 38.94 2.44
4417 7321 6.095377 CCCTTGAAGCATCAAAGAAATGTAC 58.905 40.000 5.79 0.00 44.64 2.90
4418 7322 6.071728 CCCTTGAAGCATCAAAGAAATGTACT 60.072 38.462 5.79 0.00 44.64 2.73
4419 7323 7.025963 CCTTGAAGCATCAAAGAAATGTACTC 58.974 38.462 5.79 0.00 44.64 2.59
4420 7324 6.500684 TGAAGCATCAAAGAAATGTACTCC 57.499 37.500 0.00 0.00 30.99 3.85
4421 7325 5.415701 TGAAGCATCAAAGAAATGTACTCCC 59.584 40.000 0.00 0.00 30.99 4.30
4422 7326 5.184892 AGCATCAAAGAAATGTACTCCCT 57.815 39.130 0.00 0.00 0.00 4.20
4423 7327 5.189180 AGCATCAAAGAAATGTACTCCCTC 58.811 41.667 0.00 0.00 0.00 4.30
4424 7328 4.336713 GCATCAAAGAAATGTACTCCCTCC 59.663 45.833 0.00 0.00 0.00 4.30
4425 7329 4.202245 TCAAAGAAATGTACTCCCTCCG 57.798 45.455 0.00 0.00 0.00 4.63
4426 7330 3.581332 TCAAAGAAATGTACTCCCTCCGT 59.419 43.478 0.00 0.00 0.00 4.69
4427 7331 3.889520 AAGAAATGTACTCCCTCCGTC 57.110 47.619 0.00 0.00 0.00 4.79
4428 7332 3.103080 AGAAATGTACTCCCTCCGTCT 57.897 47.619 0.00 0.00 0.00 4.18
4429 7333 3.025262 AGAAATGTACTCCCTCCGTCTC 58.975 50.000 0.00 0.00 0.00 3.36
4430 7334 2.526888 AATGTACTCCCTCCGTCTCA 57.473 50.000 0.00 0.00 0.00 3.27
4431 7335 2.526888 ATGTACTCCCTCCGTCTCAA 57.473 50.000 0.00 0.00 0.00 3.02
4432 7336 2.297698 TGTACTCCCTCCGTCTCAAA 57.702 50.000 0.00 0.00 0.00 2.69
4433 7337 2.600790 TGTACTCCCTCCGTCTCAAAA 58.399 47.619 0.00 0.00 0.00 2.44
4434 7338 3.170717 TGTACTCCCTCCGTCTCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
4435 7339 4.346730 TGTACTCCCTCCGTCTCAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
4436 7340 4.773674 TGTACTCCCTCCGTCTCAAAATAA 59.226 41.667 0.00 0.00 0.00 1.40
4437 7341 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
4438 7342 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
4439 7343 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
4440 7344 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
4441 7345 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
4442 7346 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
4443 7347 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
4444 7348 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
4445 7349 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
4446 7350 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
4447 7351 5.107065 CCGTCTCAAAATAAGTGTCTCAACC 60.107 44.000 0.00 0.00 0.00 3.77
4448 7352 5.696724 CGTCTCAAAATAAGTGTCTCAACCT 59.303 40.000 0.00 0.00 0.00 3.50
4449 7353 6.202954 CGTCTCAAAATAAGTGTCTCAACCTT 59.797 38.462 0.00 0.00 0.00 3.50
4450 7354 7.384115 CGTCTCAAAATAAGTGTCTCAACCTTA 59.616 37.037 0.00 0.00 0.00 2.69
4451 7355 8.713271 GTCTCAAAATAAGTGTCTCAACCTTAG 58.287 37.037 0.00 0.00 0.00 2.18
4452 7356 8.429641 TCTCAAAATAAGTGTCTCAACCTTAGT 58.570 33.333 0.00 0.00 0.00 2.24
4453 7357 9.706691 CTCAAAATAAGTGTCTCAACCTTAGTA 57.293 33.333 0.00 0.00 0.00 1.82
4454 7358 9.485206 TCAAAATAAGTGTCTCAACCTTAGTAC 57.515 33.333 0.00 0.00 0.00 2.73
4455 7359 9.268268 CAAAATAAGTGTCTCAACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
4456 7360 9.841295 AAAATAAGTGTCTCAACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
4457 7361 8.828688 AATAAGTGTCTCAACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
4458 7362 6.481434 AAGTGTCTCAACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
4459 7363 6.481434 AGTGTCTCAACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
4460 7364 6.885922 AGTGTCTCAACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
4461 7365 6.761714 AGTGTCTCAACCTTAGTACAACTTTG 59.238 38.462 0.00 0.00 0.00 2.77
4462 7366 6.537660 GTGTCTCAACCTTAGTACAACTTTGT 59.462 38.462 0.00 0.00 44.86 2.83
4463 7367 7.707893 GTGTCTCAACCTTAGTACAACTTTGTA 59.292 37.037 0.00 0.00 42.35 2.41
4504 7408 9.807921 AAGTTAAGAAGATTATTTTGGGACAGA 57.192 29.630 0.00 0.00 42.39 3.41
4505 7409 9.454859 AGTTAAGAAGATTATTTTGGGACAGAG 57.545 33.333 0.00 0.00 42.39 3.35
4506 7410 8.678199 GTTAAGAAGATTATTTTGGGACAGAGG 58.322 37.037 0.00 0.00 42.39 3.69
4507 7411 5.760131 AGAAGATTATTTTGGGACAGAGGG 58.240 41.667 0.00 0.00 42.39 4.30
4508 7412 5.492524 AGAAGATTATTTTGGGACAGAGGGA 59.507 40.000 0.00 0.00 42.39 4.20
4509 7413 5.379706 AGATTATTTTGGGACAGAGGGAG 57.620 43.478 0.00 0.00 42.39 4.30
4510 7414 4.790790 AGATTATTTTGGGACAGAGGGAGT 59.209 41.667 0.00 0.00 42.39 3.85
4511 7415 5.970640 AGATTATTTTGGGACAGAGGGAGTA 59.029 40.000 0.00 0.00 42.39 2.59
4576 7484 8.512138 ACTAAAGTTTATATGCTTCCAACACAC 58.488 33.333 0.00 0.00 0.00 3.82
4604 7512 7.880713 TGTTGTTATTAGGCTGATAGTTCACAA 59.119 33.333 9.10 9.10 0.00 3.33
4630 7538 2.158385 ACCCTGTGGTTAGCAAAATGGA 60.158 45.455 0.00 0.00 44.75 3.41
4637 7545 6.065374 TGTGGTTAGCAAAATGGAGTTTCTA 58.935 36.000 0.00 0.00 0.00 2.10
4647 7559 7.148289 GCAAAATGGAGTTTCTAGTTACTACCC 60.148 40.741 6.73 3.57 0.00 3.69
4756 7669 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
4757 7670 2.564062 ACTCCCTCCGTTTCGAATTACA 59.436 45.455 0.00 0.00 0.00 2.41
4758 7671 3.187700 CTCCCTCCGTTTCGAATTACAG 58.812 50.000 0.00 0.00 0.00 2.74
4823 7746 5.583061 ACGTGTTTGTTCACTCATTTCAGTA 59.417 36.000 0.00 0.00 36.33 2.74
4894 7819 6.514063 ACGGAGGTGATACTTTATTAGCTTC 58.486 40.000 0.00 0.00 33.41 3.86
4895 7820 6.097839 ACGGAGGTGATACTTTATTAGCTTCA 59.902 38.462 0.00 0.00 33.41 3.02
4957 7883 6.462949 CGATCTGCGTATTTCTGAAAAAGTTC 59.537 38.462 6.95 4.72 34.64 3.01
5042 7968 2.797156 CTTCATTCGGAAGTATGCTCCG 59.203 50.000 12.95 12.95 46.49 4.63
5106 8032 5.591877 GCCAAGAACAAGATATGGTGATTCT 59.408 40.000 0.00 0.00 33.63 2.40
5121 8047 5.938125 TGGTGATTCTACTAAACAAGGAAGC 59.062 40.000 0.00 0.00 0.00 3.86
5123 8049 5.063564 GTGATTCTACTAAACAAGGAAGCCG 59.936 44.000 0.00 0.00 0.00 5.52
5125 8051 2.007608 CTACTAAACAAGGAAGCCGGC 58.992 52.381 21.89 21.89 0.00 6.13
5209 8138 1.078759 CTGCCCGTTCAAGCGAGTAG 61.079 60.000 0.00 0.00 0.00 2.57
5218 8147 2.413837 TCAAGCGAGTAGTTTGAAGCC 58.586 47.619 0.13 0.00 45.07 4.35
5232 8161 1.270625 TGAAGCCACCTTTACACCTCG 60.271 52.381 0.00 0.00 0.00 4.63
5243 8172 3.738830 TTACACCTCGTTACAAGCAGT 57.261 42.857 0.00 0.00 0.00 4.40
5256 8185 7.172532 TCGTTACAAGCAGTTATTCAAGTGAAT 59.827 33.333 11.13 11.13 45.77 2.57
5451 8380 0.664761 CCGCCCTTGACTGCATAATG 59.335 55.000 0.00 0.00 0.00 1.90
5474 8403 2.476854 GCCATGTTCGACAGCATTCTTC 60.477 50.000 0.00 0.00 0.00 2.87
5484 8413 0.877071 AGCATTCTTCCTTGTGTGCG 59.123 50.000 0.00 0.00 37.63 5.34
5496 8425 1.577468 TGTGTGCGACGATGAAAGTT 58.423 45.000 0.00 0.00 0.00 2.66
5498 8427 0.865111 TGTGCGACGATGAAAGTTGG 59.135 50.000 0.00 0.00 0.00 3.77
5499 8428 1.144969 GTGCGACGATGAAAGTTGGA 58.855 50.000 0.00 0.00 0.00 3.53
5500 8429 1.136336 GTGCGACGATGAAAGTTGGAC 60.136 52.381 0.00 0.00 37.22 4.02
5501 8430 1.144969 GCGACGATGAAAGTTGGACA 58.855 50.000 0.00 0.00 0.00 4.02
5502 8431 1.126846 GCGACGATGAAAGTTGGACAG 59.873 52.381 0.00 0.00 0.00 3.51
5503 8432 1.126846 CGACGATGAAAGTTGGACAGC 59.873 52.381 0.00 0.00 0.00 4.40
5504 8433 2.143122 GACGATGAAAGTTGGACAGCA 58.857 47.619 0.00 0.00 0.00 4.41
5505 8434 2.744202 GACGATGAAAGTTGGACAGCAT 59.256 45.455 0.00 0.00 0.00 3.79
5506 8435 3.932710 GACGATGAAAGTTGGACAGCATA 59.067 43.478 0.00 0.00 0.00 3.14
5507 8436 4.323417 ACGATGAAAGTTGGACAGCATAA 58.677 39.130 0.00 0.00 0.00 1.90
5508 8437 4.943705 ACGATGAAAGTTGGACAGCATAAT 59.056 37.500 0.00 0.00 0.00 1.28
5509 8438 6.112734 ACGATGAAAGTTGGACAGCATAATA 58.887 36.000 0.00 0.00 0.00 0.98
5510 8439 6.767902 ACGATGAAAGTTGGACAGCATAATAT 59.232 34.615 0.00 0.00 0.00 1.28
5511 8440 7.073883 CGATGAAAGTTGGACAGCATAATATG 58.926 38.462 0.00 0.00 0.00 1.78
5534 8463 2.139323 TGGTACACTCTAGCATCGGT 57.861 50.000 0.00 0.00 0.00 4.69
5535 8464 2.022195 TGGTACACTCTAGCATCGGTC 58.978 52.381 0.00 0.00 0.00 4.79
5537 8466 2.688958 GGTACACTCTAGCATCGGTCTT 59.311 50.000 0.00 0.00 0.00 3.01
5538 8467 2.949451 ACACTCTAGCATCGGTCTTG 57.051 50.000 0.00 0.00 0.00 3.02
5547 8478 4.314740 AGCATCGGTCTTGTCTTATCTC 57.685 45.455 0.00 0.00 0.00 2.75
5549 8480 4.047822 GCATCGGTCTTGTCTTATCTCAG 58.952 47.826 0.00 0.00 0.00 3.35
5634 8576 2.099141 TGCTACAGTCATTGGTGAGC 57.901 50.000 0.00 0.00 34.36 4.26
5643 8585 1.301716 ATTGGTGAGCGTTGCGTCT 60.302 52.632 0.00 0.00 0.00 4.18
5666 8615 2.549633 ATTCTTTCCTTGCAATCGCG 57.450 45.000 0.00 0.00 42.97 5.87
5675 8624 3.430862 GCAATCGCGGGCAACTCA 61.431 61.111 6.13 0.00 0.00 3.41
5684 8633 1.401905 GCGGGCAACTCATCTAAAAGG 59.598 52.381 0.00 0.00 0.00 3.11
5690 8639 4.346129 GCAACTCATCTAAAAGGAATGCG 58.654 43.478 0.00 0.00 0.00 4.73
5717 8666 3.808656 GCCAGCTCCTTTCAGCGC 61.809 66.667 0.00 0.00 44.82 5.92
5718 8667 2.359107 CCAGCTCCTTTCAGCGCA 60.359 61.111 11.47 0.00 44.82 6.09
5719 8668 2.684843 CCAGCTCCTTTCAGCGCAC 61.685 63.158 11.47 0.00 44.82 5.34
5724 8673 1.580845 CTCCTTTCAGCGCACCCAAG 61.581 60.000 11.47 5.91 0.00 3.61
5769 8724 5.107989 CGTGACGGTAGCATATATGTTTGAC 60.108 44.000 14.14 4.51 0.00 3.18
5790 8745 2.670414 CACGACAGGAGCTGAAGATTTC 59.330 50.000 0.00 0.00 35.18 2.17
5814 8769 0.374758 CATGTATGCGTGCAGTCACC 59.625 55.000 2.42 0.00 40.04 4.02
5838 8793 7.603651 CCGAAGGCATGATTATTACTACTAGT 58.396 38.462 0.00 0.00 46.14 2.57
5874 8829 3.618780 GAGTCCCTGCCAGGTGCTG 62.619 68.421 10.47 0.00 42.00 4.41
5942 8904 5.776744 ACAAGCCTTTTTCTGATTGATGTC 58.223 37.500 0.00 0.00 0.00 3.06
5987 8953 1.561643 TGTTGCAGAGGCTAGCTACT 58.438 50.000 15.72 11.23 41.91 2.57
6007 8982 1.611519 AGGCTACTAGCTAGCTTCCG 58.388 55.000 24.88 14.11 46.53 4.30
6008 8983 1.143277 AGGCTACTAGCTAGCTTCCGA 59.857 52.381 24.88 3.23 46.53 4.55
6011 8986 0.942962 TACTAGCTAGCTTCCGACGC 59.057 55.000 24.88 0.00 0.00 5.19
6012 8987 1.369448 CTAGCTAGCTTCCGACGCG 60.369 63.158 24.88 3.53 0.00 6.01
6013 8988 1.773054 CTAGCTAGCTTCCGACGCGA 61.773 60.000 24.88 0.00 0.00 5.87
6086 9064 3.193757 CGATCCGGTCGGTCTTCA 58.806 61.111 15.79 0.00 46.47 3.02
6096 9074 0.251386 TCGGTCTTCAGAGCAGGACT 60.251 55.000 6.81 0.00 42.28 3.85
6108 9086 0.326264 GCAGGACTTCACATCACCCT 59.674 55.000 0.00 0.00 0.00 4.34
6124 9102 4.200283 CTGCCGCGACTCCCTCTC 62.200 72.222 8.23 0.00 0.00 3.20
6125 9103 4.742649 TGCCGCGACTCCCTCTCT 62.743 66.667 8.23 0.00 0.00 3.10
6126 9104 4.200283 GCCGCGACTCCCTCTCTG 62.200 72.222 8.23 0.00 0.00 3.35
6129 9107 4.200283 GCGACTCCCTCTCTGCGG 62.200 72.222 0.00 0.00 0.00 5.69
6131 9109 2.766400 CGACTCCCTCTCTGCGGAC 61.766 68.421 0.00 0.00 0.00 4.79
6132 9110 2.752238 ACTCCCTCTCTGCGGACG 60.752 66.667 0.00 0.00 0.00 4.79
6134 9112 2.750637 TCCCTCTCTGCGGACGAC 60.751 66.667 0.00 0.00 0.00 4.34
6158 9136 2.370349 TCAAGAGGAGAGGACGATGTC 58.630 52.381 0.00 0.00 0.00 3.06
6215 9203 1.407979 GACGAGGGCTTAATCGAGGAA 59.592 52.381 3.36 0.00 41.40 3.36
6216 9204 1.409427 ACGAGGGCTTAATCGAGGAAG 59.591 52.381 3.36 5.01 41.40 3.46
6217 9205 1.681793 CGAGGGCTTAATCGAGGAAGA 59.318 52.381 12.11 0.00 41.40 2.87
6218 9206 2.544069 CGAGGGCTTAATCGAGGAAGAC 60.544 54.545 12.11 9.35 41.40 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 2.813754 CAGATTTTCCGGAAGCAACTGA 59.186 45.455 24.69 7.45 0.00 3.41
37 39 2.669391 GCAGATTTTCCGGAAGCAACTG 60.669 50.000 24.65 24.65 0.00 3.16
47 54 5.756195 TGGAGAATATTGCAGATTTTCCG 57.244 39.130 19.61 0.00 39.38 4.30
62 69 4.021719 CCACTTCAAAACTGCATGGAGAAT 60.022 41.667 22.24 6.35 0.00 2.40
200 208 4.009675 ACAATTGATGGCGTCTACATTGT 58.990 39.130 13.59 18.66 32.54 2.71
232 240 4.183101 ACGAAGTTACGGTCTTGTTTTCA 58.817 39.130 0.00 0.00 37.78 2.69
233 241 4.783959 ACGAAGTTACGGTCTTGTTTTC 57.216 40.909 0.00 0.00 37.78 2.29
242 250 2.087646 GAGGGAGTACGAAGTTACGGT 58.912 52.381 0.00 0.00 37.78 4.83
245 253 2.359900 TCGGAGGGAGTACGAAGTTAC 58.640 52.381 0.00 0.00 37.78 2.50
252 260 2.195741 TATGGATCGGAGGGAGTACG 57.804 55.000 0.00 0.00 0.00 3.67
330 339 5.008331 TGTACTCCTTCCGCTCGAATATAT 58.992 41.667 0.00 0.00 0.00 0.86
331 340 4.392047 TGTACTCCTTCCGCTCGAATATA 58.608 43.478 0.00 0.00 0.00 0.86
337 346 2.358267 AGTTATGTACTCCTTCCGCTCG 59.642 50.000 0.00 0.00 28.23 5.03
340 349 4.251268 ACAAAGTTATGTACTCCTTCCGC 58.749 43.478 0.00 0.00 35.54 5.54
371 380 4.123497 TCCTTAGGTGATCGATTGTGTG 57.877 45.455 0.00 0.00 0.00 3.82
400 409 3.191581 CGGTGAGTTCTTAGAAGCTCTGA 59.808 47.826 18.15 0.00 0.00 3.27
428 437 4.800993 CGATCGATTGTGTTCTTAGAAGCT 59.199 41.667 10.26 0.00 0.00 3.74
429 438 4.798907 TCGATCGATTGTGTTCTTAGAAGC 59.201 41.667 15.15 0.00 0.00 3.86
430 439 6.528423 ACTTCGATCGATTGTGTTCTTAGAAG 59.472 38.462 20.18 10.17 37.02 2.85
431 440 6.387465 ACTTCGATCGATTGTGTTCTTAGAA 58.613 36.000 20.18 0.00 0.00 2.10
432 441 5.950883 ACTTCGATCGATTGTGTTCTTAGA 58.049 37.500 20.18 0.00 0.00 2.10
433 442 6.633668 AACTTCGATCGATTGTGTTCTTAG 57.366 37.500 20.18 11.35 0.00 2.18
435 444 5.465390 TGAAACTTCGATCGATTGTGTTCTT 59.535 36.000 20.18 11.43 0.00 2.52
436 445 4.988540 TGAAACTTCGATCGATTGTGTTCT 59.011 37.500 20.18 11.54 0.00 3.01
437 446 5.264060 TGAAACTTCGATCGATTGTGTTC 57.736 39.130 20.18 21.28 0.00 3.18
439 1866 3.679980 CCTGAAACTTCGATCGATTGTGT 59.320 43.478 20.18 15.55 0.00 3.72
442 1869 3.926527 TCACCTGAAACTTCGATCGATTG 59.073 43.478 20.18 16.74 0.00 2.67
445 1872 3.653539 TTCACCTGAAACTTCGATCGA 57.346 42.857 15.15 15.15 0.00 3.59
455 1882 5.644636 AGTTACTTGTTCGTTTCACCTGAAA 59.355 36.000 0.00 0.00 41.29 2.69
458 1885 4.809426 AGAGTTACTTGTTCGTTTCACCTG 59.191 41.667 0.00 0.00 0.00 4.00
459 1886 5.019785 AGAGTTACTTGTTCGTTTCACCT 57.980 39.130 0.00 0.00 0.00 4.00
460 1887 5.277202 GGAAGAGTTACTTGTTCGTTTCACC 60.277 44.000 0.00 0.00 39.13 4.02
462 1889 5.667466 AGGAAGAGTTACTTGTTCGTTTCA 58.333 37.500 0.00 0.00 39.13 2.69
467 1894 6.210287 AGGATAGGAAGAGTTACTTGTTCG 57.790 41.667 0.00 0.00 39.13 3.95
471 1898 5.422331 TGTGGAGGATAGGAAGAGTTACTTG 59.578 44.000 0.00 0.00 39.13 3.16
474 1901 6.487299 AATGTGGAGGATAGGAAGAGTTAC 57.513 41.667 0.00 0.00 0.00 2.50
478 1905 5.620738 TGAAATGTGGAGGATAGGAAGAG 57.379 43.478 0.00 0.00 0.00 2.85
480 1907 7.308450 TCTATGAAATGTGGAGGATAGGAAG 57.692 40.000 0.00 0.00 0.00 3.46
481 1908 7.690454 TTCTATGAAATGTGGAGGATAGGAA 57.310 36.000 0.00 0.00 0.00 3.36
482 1909 7.690454 TTTCTATGAAATGTGGAGGATAGGA 57.310 36.000 0.00 0.00 0.00 2.94
483 1910 8.752005 TTTTTCTATGAAATGTGGAGGATAGG 57.248 34.615 0.00 0.00 0.00 2.57
542 2046 8.047911 AGAGATGCCCTTTGATTCATATCATAG 58.952 37.037 0.00 0.00 40.37 2.23
543 2047 7.925622 AGAGATGCCCTTTGATTCATATCATA 58.074 34.615 0.00 0.00 40.37 2.15
545 2049 6.196918 AGAGATGCCCTTTGATTCATATCA 57.803 37.500 0.00 0.00 39.00 2.15
546 2050 7.521871 AAAGAGATGCCCTTTGATTCATATC 57.478 36.000 0.00 0.00 33.07 1.63
548 2052 7.616935 AGAAAAAGAGATGCCCTTTGATTCATA 59.383 33.333 0.00 0.00 34.42 2.15
550 2054 5.776716 AGAAAAAGAGATGCCCTTTGATTCA 59.223 36.000 0.00 0.00 34.42 2.57
551 2055 6.278172 AGAAAAAGAGATGCCCTTTGATTC 57.722 37.500 0.00 0.00 34.42 2.52
552 2056 7.968014 ATAGAAAAAGAGATGCCCTTTGATT 57.032 32.000 0.00 0.00 34.42 2.57
553 2057 7.069208 GGAATAGAAAAAGAGATGCCCTTTGAT 59.931 37.037 0.00 0.00 34.42 2.57
554 2058 6.378280 GGAATAGAAAAAGAGATGCCCTTTGA 59.622 38.462 0.00 0.00 34.42 2.69
559 2063 6.072230 GCATAGGAATAGAAAAAGAGATGCCC 60.072 42.308 0.00 0.00 31.89 5.36
560 2064 6.488006 TGCATAGGAATAGAAAAAGAGATGCC 59.512 38.462 0.00 0.00 36.09 4.40
561 2065 7.502120 TGCATAGGAATAGAAAAAGAGATGC 57.498 36.000 0.00 0.00 37.16 3.91
574 2078 9.170734 GCATCTCAAATTCTATGCATAGGAATA 57.829 33.333 29.02 15.02 43.30 1.75
575 2079 8.053026 GCATCTCAAATTCTATGCATAGGAAT 57.947 34.615 29.02 22.76 43.30 3.01
576 2080 7.444629 GCATCTCAAATTCTATGCATAGGAA 57.555 36.000 29.02 21.79 43.30 3.36
583 2087 6.068473 TGACATGCATCTCAAATTCTATGC 57.932 37.500 1.73 0.00 43.92 3.14
598 2102 5.761726 GTCATAGGAAATGAGATGACATGCA 59.238 40.000 8.58 0.00 44.91 3.96
599 2103 5.996513 AGTCATAGGAAATGAGATGACATGC 59.003 40.000 14.37 0.00 46.94 4.06
600 2104 8.447924 AAAGTCATAGGAAATGAGATGACATG 57.552 34.615 14.37 0.00 46.94 3.21
602 2106 8.324306 AGAAAAGTCATAGGAAATGAGATGACA 58.676 33.333 14.37 0.00 46.94 3.58
603 2107 8.729805 AGAAAAGTCATAGGAAATGAGATGAC 57.270 34.615 5.86 5.86 45.57 3.06
613 2117 9.408648 GGGAAAATCATAGAAAAGTCATAGGAA 57.591 33.333 0.00 0.00 0.00 3.36
614 2118 8.781951 AGGGAAAATCATAGAAAAGTCATAGGA 58.218 33.333 0.00 0.00 0.00 2.94
615 2119 8.844244 CAGGGAAAATCATAGAAAAGTCATAGG 58.156 37.037 0.00 0.00 0.00 2.57
616 2120 9.618890 TCAGGGAAAATCATAGAAAAGTCATAG 57.381 33.333 0.00 0.00 0.00 2.23
618 2122 8.112183 ACTCAGGGAAAATCATAGAAAAGTCAT 58.888 33.333 0.00 0.00 0.00 3.06
619 2123 7.461749 ACTCAGGGAAAATCATAGAAAAGTCA 58.538 34.615 0.00 0.00 0.00 3.41
621 2125 8.712228 AAACTCAGGGAAAATCATAGAAAAGT 57.288 30.769 0.00 0.00 0.00 2.66
623 2127 8.796475 CAGAAACTCAGGGAAAATCATAGAAAA 58.204 33.333 0.00 0.00 0.00 2.29
624 2128 7.094205 GCAGAAACTCAGGGAAAATCATAGAAA 60.094 37.037 0.00 0.00 0.00 2.52
625 2129 6.375455 GCAGAAACTCAGGGAAAATCATAGAA 59.625 38.462 0.00 0.00 0.00 2.10
626 2130 5.882557 GCAGAAACTCAGGGAAAATCATAGA 59.117 40.000 0.00 0.00 0.00 1.98
628 2132 4.635765 CGCAGAAACTCAGGGAAAATCATA 59.364 41.667 0.00 0.00 0.00 2.15
632 2136 3.140325 TCGCAGAAACTCAGGGAAAAT 57.860 42.857 0.00 0.00 0.00 1.82
633 2137 2.631160 TCGCAGAAACTCAGGGAAAA 57.369 45.000 0.00 0.00 0.00 2.29
635 2139 1.066143 GGATCGCAGAAACTCAGGGAA 60.066 52.381 0.00 0.00 43.58 3.97
637 2141 0.539051 AGGATCGCAGAAACTCAGGG 59.461 55.000 0.00 0.00 43.58 4.45
660 2349 1.362406 GCCTAAGAACTCACGCAGCC 61.362 60.000 0.00 0.00 0.00 4.85
672 2361 0.908910 TCTTGATTGGCCGCCTAAGA 59.091 50.000 11.61 11.91 0.00 2.10
684 2373 1.678970 GGTGGCGGGCTTCTTGATT 60.679 57.895 2.38 0.00 0.00 2.57
765 2454 1.211949 TCCCATCGAAGTTCCATTCCC 59.788 52.381 0.00 0.00 0.00 3.97
766 2455 2.710096 TCCCATCGAAGTTCCATTCC 57.290 50.000 0.00 0.00 0.00 3.01
793 2703 0.621571 AGGCCCATGTTCTCTAGCCA 60.622 55.000 0.00 0.00 42.97 4.75
865 2783 3.064931 GCACGTACAGCCTAACTTCTTT 58.935 45.455 0.00 0.00 0.00 2.52
882 2800 3.036084 GTGTCCGGTCTGTGCACG 61.036 66.667 13.13 7.36 0.00 5.34
883 2801 2.665185 GGTGTCCGGTCTGTGCAC 60.665 66.667 10.75 10.75 0.00 4.57
884 2802 4.293648 CGGTGTCCGGTCTGTGCA 62.294 66.667 0.00 0.00 44.15 4.57
932 2884 9.762933 CCAGAATGTTCTTATTTTTCTTTTGGA 57.237 29.630 0.00 0.00 34.74 3.53
934 2886 9.546428 ACCCAGAATGTTCTTATTTTTCTTTTG 57.454 29.630 0.00 0.00 34.74 2.44
938 2890 6.151144 CCGACCCAGAATGTTCTTATTTTTCT 59.849 38.462 0.00 0.00 34.74 2.52
939 2891 6.150474 TCCGACCCAGAATGTTCTTATTTTTC 59.850 38.462 0.00 0.00 34.74 2.29
940 2892 6.007703 TCCGACCCAGAATGTTCTTATTTTT 58.992 36.000 0.00 0.00 34.74 1.94
941 2893 5.566469 TCCGACCCAGAATGTTCTTATTTT 58.434 37.500 0.00 0.00 34.74 1.82
945 2897 3.194968 GTCTCCGACCCAGAATGTTCTTA 59.805 47.826 0.00 0.00 34.74 2.10
1708 3682 1.153901 CCAGCCAAGCAGCAAATCG 60.154 57.895 0.00 0.00 34.23 3.34
1782 3756 3.945304 AAACGTCGTGATCCCCCGC 62.945 63.158 0.00 0.00 0.00 6.13
1830 3804 3.708563 GCAAACTGCTAAACCAGAACA 57.291 42.857 0.00 0.00 40.96 3.18
1878 3853 1.340889 TCAACAGCAGGCACAATTTCC 59.659 47.619 0.00 0.00 0.00 3.13
1925 3900 0.674534 CCACATAGTAGCCCGAGGAC 59.325 60.000 0.00 0.00 0.00 3.85
1932 3907 2.017049 CAAACAGCCCACATAGTAGCC 58.983 52.381 0.00 0.00 0.00 3.93
1940 3915 1.955778 CACTCAATCAAACAGCCCACA 59.044 47.619 0.00 0.00 0.00 4.17
1949 3924 4.782691 TCCACCTCCTATCACTCAATCAAA 59.217 41.667 0.00 0.00 0.00 2.69
1953 3960 3.649981 CCATCCACCTCCTATCACTCAAT 59.350 47.826 0.00 0.00 0.00 2.57
1971 3978 7.328249 CACAACAACAATACAAATACACCCATC 59.672 37.037 0.00 0.00 0.00 3.51
1972 3979 7.014711 TCACAACAACAATACAAATACACCCAT 59.985 33.333 0.00 0.00 0.00 4.00
1973 3980 6.321435 TCACAACAACAATACAAATACACCCA 59.679 34.615 0.00 0.00 0.00 4.51
1976 3983 8.795786 ACATCACAACAACAATACAAATACAC 57.204 30.769 0.00 0.00 0.00 2.90
2048 4267 1.523711 ACACAACTCCACGTGCTGG 60.524 57.895 10.91 4.57 42.29 4.85
2050 4269 0.392461 AACACACAACTCCACGTGCT 60.392 50.000 10.91 0.00 36.57 4.40
2113 4332 5.823209 TGAACTATGCAAATGATCCACAG 57.177 39.130 0.00 0.00 0.00 3.66
2144 4363 1.524621 GGGCGATCACATGGACCTG 60.525 63.158 0.00 0.00 32.64 4.00
2155 4374 2.656560 AGCATTAGATACGGGCGATC 57.343 50.000 0.00 0.00 0.00 3.69
2160 4379 3.208747 ACCCAAAGCATTAGATACGGG 57.791 47.619 0.00 0.00 38.47 5.28
2184 4403 2.408565 CATAAACCCCCTCCTGCTCTA 58.591 52.381 0.00 0.00 0.00 2.43
2266 4494 8.086522 ACGTACAACACATCTTCATTACTAACT 58.913 33.333 0.00 0.00 0.00 2.24
2271 4499 6.699895 TCACGTACAACACATCTTCATTAC 57.300 37.500 0.00 0.00 0.00 1.89
2299 4527 5.354792 TGGAACATTACCACGCTAAATTACC 59.645 40.000 0.00 0.00 32.03 2.85
2310 4538 1.200020 GTGCAGCTGGAACATTACCAC 59.800 52.381 17.12 7.68 38.20 4.16
2323 4551 5.711976 ACATGTAAATTTAGAAGGTGCAGCT 59.288 36.000 13.85 13.85 0.00 4.24
2324 4552 5.954335 ACATGTAAATTTAGAAGGTGCAGC 58.046 37.500 8.11 8.11 0.00 5.25
2369 4624 7.960738 TCAAACGCATGCTAAATTACTTAGTTC 59.039 33.333 17.13 0.00 39.49 3.01
2393 4648 8.112822 TCCATTTGTGTATCCCTAAGAAAATCA 58.887 33.333 0.00 0.00 0.00 2.57
2542 4811 6.354130 AGGTGCTTCTAACTTGACTAACAAA 58.646 36.000 0.00 0.00 38.08 2.83
2578 4847 8.367943 TGTTCATCATTCAAATTCACAAAAGG 57.632 30.769 0.00 0.00 0.00 3.11
2582 4852 8.819015 CAACTTGTTCATCATTCAAATTCACAA 58.181 29.630 0.00 0.00 0.00 3.33
2630 4906 8.865978 CAACAATCAAGTAATCCATGTCATTTG 58.134 33.333 0.00 0.00 0.00 2.32
2796 5075 5.878669 CCCCAGAAACCACTACAAACTATAC 59.121 44.000 0.00 0.00 0.00 1.47
2819 5098 3.308530 CTTCACCATTTTGCGAAGAACC 58.691 45.455 0.00 0.00 37.63 3.62
2855 5134 2.781595 GAAGGCCATCGGTGACACGT 62.782 60.000 5.01 0.00 34.94 4.49
3037 5316 6.185511 TCTTCCTCGGACAGAAAATAGACTA 58.814 40.000 0.00 0.00 0.00 2.59
3038 5317 5.017490 TCTTCCTCGGACAGAAAATAGACT 58.983 41.667 0.00 0.00 0.00 3.24
3047 5326 1.205655 CAAGCATCTTCCTCGGACAGA 59.794 52.381 0.00 0.00 0.00 3.41
3052 5331 1.415659 AGGATCAAGCATCTTCCTCGG 59.584 52.381 0.00 0.00 33.22 4.63
3055 5334 3.663198 ACCTAGGATCAAGCATCTTCCT 58.337 45.455 17.98 4.10 41.43 3.36
3178 5622 7.833682 TGTAGTCCATGATTGGTCAACAAATAT 59.166 33.333 0.00 0.00 43.46 1.28
3179 5623 7.171653 TGTAGTCCATGATTGGTCAACAAATA 58.828 34.615 0.00 0.00 43.46 1.40
3190 5643 8.028354 TGCTTGTTTAAATGTAGTCCATGATTG 58.972 33.333 0.00 0.00 32.82 2.67
3218 5671 1.951602 CTGGGTATCGTATCGGTGTCA 59.048 52.381 0.00 0.00 0.00 3.58
3219 5672 1.335689 GCTGGGTATCGTATCGGTGTC 60.336 57.143 0.00 0.00 0.00 3.67
3220 5673 0.672342 GCTGGGTATCGTATCGGTGT 59.328 55.000 0.00 0.00 0.00 4.16
3221 5674 0.386858 CGCTGGGTATCGTATCGGTG 60.387 60.000 0.00 0.00 0.00 4.94
3222 5675 0.535780 TCGCTGGGTATCGTATCGGT 60.536 55.000 0.00 0.00 0.00 4.69
3223 5676 0.109873 GTCGCTGGGTATCGTATCGG 60.110 60.000 0.00 0.00 0.00 4.18
3224 5677 0.589708 TGTCGCTGGGTATCGTATCG 59.410 55.000 0.00 0.00 0.00 2.92
3225 5678 1.335689 GGTGTCGCTGGGTATCGTATC 60.336 57.143 0.00 0.00 0.00 2.24
3226 5679 0.672342 GGTGTCGCTGGGTATCGTAT 59.328 55.000 0.00 0.00 0.00 3.06
3227 5680 0.394762 AGGTGTCGCTGGGTATCGTA 60.395 55.000 0.00 0.00 0.00 3.43
3228 5681 0.394762 TAGGTGTCGCTGGGTATCGT 60.395 55.000 0.00 0.00 0.00 3.73
3229 5682 0.959553 ATAGGTGTCGCTGGGTATCG 59.040 55.000 0.00 0.00 0.00 2.92
3230 5683 3.762288 TCATATAGGTGTCGCTGGGTATC 59.238 47.826 0.00 0.00 0.00 2.24
3231 5684 3.774734 TCATATAGGTGTCGCTGGGTAT 58.225 45.455 0.00 0.00 0.00 2.73
3232 5685 3.232720 TCATATAGGTGTCGCTGGGTA 57.767 47.619 0.00 0.00 0.00 3.69
3233 5686 2.082140 TCATATAGGTGTCGCTGGGT 57.918 50.000 0.00 0.00 0.00 4.51
3234 5687 3.119101 GGTATCATATAGGTGTCGCTGGG 60.119 52.174 0.00 0.00 0.00 4.45
3235 5688 3.119101 GGGTATCATATAGGTGTCGCTGG 60.119 52.174 0.00 0.00 0.00 4.85
3236 5689 3.427638 CGGGTATCATATAGGTGTCGCTG 60.428 52.174 0.00 0.00 0.00 5.18
3237 5690 2.753452 CGGGTATCATATAGGTGTCGCT 59.247 50.000 0.00 0.00 0.00 4.93
3238 5691 2.159282 CCGGGTATCATATAGGTGTCGC 60.159 54.545 0.00 0.00 0.00 5.19
3371 6178 3.053831 AGGTGGAACAAGAACATACCG 57.946 47.619 0.00 0.00 44.16 4.02
3506 6314 1.203300 TGACTCCCATTGACCCTCTCA 60.203 52.381 0.00 0.00 0.00 3.27
3814 6622 0.179161 CTAGCTTCTCACCGACACCG 60.179 60.000 0.00 0.00 0.00 4.94
3826 6634 7.918562 AGATTTTCAGACTTACGATCTAGCTTC 59.081 37.037 0.00 0.00 0.00 3.86
3846 6654 6.890979 AGCAGTAAAAGCAAGAGAGATTTT 57.109 33.333 0.00 0.00 0.00 1.82
3862 6670 6.350110 GCCAGGAACATTAAATGAAGCAGTAA 60.350 38.462 0.00 0.00 0.00 2.24
3877 6685 2.086869 CGTTTCTCATGCCAGGAACAT 58.913 47.619 6.43 0.00 0.00 2.71
3879 6687 0.804989 CCGTTTCTCATGCCAGGAAC 59.195 55.000 0.00 0.00 0.00 3.62
3922 6730 7.923344 ACTCCTCGATGATAACTTTGATGTAAG 59.077 37.037 0.00 0.00 0.00 2.34
4005 6896 9.178758 ACCAGAAGTAAAGCTAAGGAAATAATG 57.821 33.333 0.00 0.00 0.00 1.90
4049 6942 1.269448 GGGAAGCATCTTGAAAACGCA 59.731 47.619 0.00 0.00 0.00 5.24
4050 6943 1.269448 TGGGAAGCATCTTGAAAACGC 59.731 47.619 0.00 0.00 0.00 4.84
4051 6944 3.855689 ATGGGAAGCATCTTGAAAACG 57.144 42.857 0.00 0.00 0.00 3.60
4052 6945 6.238869 GGAGATATGGGAAGCATCTTGAAAAC 60.239 42.308 0.00 0.00 0.00 2.43
4056 6949 3.328931 GGGAGATATGGGAAGCATCTTGA 59.671 47.826 0.00 0.00 0.00 3.02
4074 6967 3.245052 ACTGGAATGAGGTGAAAAGGGAG 60.245 47.826 0.00 0.00 0.00 4.30
4288 7181 7.916977 CGATGGAGAAAATGCTCAAATTCATTA 59.083 33.333 0.00 0.00 36.62 1.90
4293 7194 5.649782 ACGATGGAGAAAATGCTCAAATT 57.350 34.783 0.00 0.00 36.62 1.82
4327 7228 8.579682 TTCAACCAAAAACAAAACAAAAATGG 57.420 26.923 0.00 0.00 0.00 3.16
4367 7269 8.378421 GCAAAACTCAAGCTAATGAAATTGATC 58.622 33.333 9.78 0.00 36.99 2.92
4417 7321 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
4418 7322 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4419 7323 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4420 7324 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
4421 7325 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
4422 7326 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
4423 7327 5.107065 GGTTGAGACACTTATTTTGAGACGG 60.107 44.000 0.00 0.00 0.00 4.79
4424 7328 5.696724 AGGTTGAGACACTTATTTTGAGACG 59.303 40.000 0.00 0.00 0.00 4.18
4425 7329 7.497925 AAGGTTGAGACACTTATTTTGAGAC 57.502 36.000 0.00 0.00 0.00 3.36
4426 7330 8.429641 ACTAAGGTTGAGACACTTATTTTGAGA 58.570 33.333 0.00 0.00 0.00 3.27
4427 7331 8.608844 ACTAAGGTTGAGACACTTATTTTGAG 57.391 34.615 0.00 0.00 0.00 3.02
4428 7332 9.485206 GTACTAAGGTTGAGACACTTATTTTGA 57.515 33.333 0.00 0.00 0.00 2.69
4429 7333 9.268268 TGTACTAAGGTTGAGACACTTATTTTG 57.732 33.333 0.00 0.00 0.00 2.44
4430 7334 9.841295 TTGTACTAAGGTTGAGACACTTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
4431 7335 9.269453 GTTGTACTAAGGTTGAGACACTTATTT 57.731 33.333 0.00 0.00 0.00 1.40
4432 7336 8.648693 AGTTGTACTAAGGTTGAGACACTTATT 58.351 33.333 0.00 0.00 0.00 1.40
4433 7337 8.191534 AGTTGTACTAAGGTTGAGACACTTAT 57.808 34.615 0.00 0.00 0.00 1.73
4434 7338 7.592885 AGTTGTACTAAGGTTGAGACACTTA 57.407 36.000 0.00 0.00 0.00 2.24
4435 7339 6.481434 AGTTGTACTAAGGTTGAGACACTT 57.519 37.500 0.00 0.00 0.00 3.16
4436 7340 6.481434 AAGTTGTACTAAGGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
4437 7341 6.537660 ACAAAGTTGTACTAAGGTTGAGACAC 59.462 38.462 0.00 0.00 40.16 3.67
4438 7342 6.646267 ACAAAGTTGTACTAAGGTTGAGACA 58.354 36.000 0.00 0.00 40.16 3.41
4478 7382 9.807921 TCTGTCCCAAAATAATCTTCTTAACTT 57.192 29.630 0.00 0.00 0.00 2.66
4479 7383 9.454859 CTCTGTCCCAAAATAATCTTCTTAACT 57.545 33.333 0.00 0.00 0.00 2.24
4480 7384 8.678199 CCTCTGTCCCAAAATAATCTTCTTAAC 58.322 37.037 0.00 0.00 0.00 2.01
4481 7385 7.834181 CCCTCTGTCCCAAAATAATCTTCTTAA 59.166 37.037 0.00 0.00 0.00 1.85
4482 7386 7.183839 TCCCTCTGTCCCAAAATAATCTTCTTA 59.816 37.037 0.00 0.00 0.00 2.10
4483 7387 6.011628 TCCCTCTGTCCCAAAATAATCTTCTT 60.012 38.462 0.00 0.00 0.00 2.52
4484 7388 5.492524 TCCCTCTGTCCCAAAATAATCTTCT 59.507 40.000 0.00 0.00 0.00 2.85
4485 7389 5.755849 TCCCTCTGTCCCAAAATAATCTTC 58.244 41.667 0.00 0.00 0.00 2.87
4486 7390 5.254032 ACTCCCTCTGTCCCAAAATAATCTT 59.746 40.000 0.00 0.00 0.00 2.40
4487 7391 4.790790 ACTCCCTCTGTCCCAAAATAATCT 59.209 41.667 0.00 0.00 0.00 2.40
4488 7392 5.117406 ACTCCCTCTGTCCCAAAATAATC 57.883 43.478 0.00 0.00 0.00 1.75
4489 7393 6.160459 ACATACTCCCTCTGTCCCAAAATAAT 59.840 38.462 0.00 0.00 0.00 1.28
4490 7394 5.491078 ACATACTCCCTCTGTCCCAAAATAA 59.509 40.000 0.00 0.00 0.00 1.40
4491 7395 5.036916 ACATACTCCCTCTGTCCCAAAATA 58.963 41.667 0.00 0.00 0.00 1.40
4492 7396 3.852578 ACATACTCCCTCTGTCCCAAAAT 59.147 43.478 0.00 0.00 0.00 1.82
4493 7397 3.256704 ACATACTCCCTCTGTCCCAAAA 58.743 45.455 0.00 0.00 0.00 2.44
4494 7398 2.915869 ACATACTCCCTCTGTCCCAAA 58.084 47.619 0.00 0.00 0.00 3.28
4495 7399 2.642171 ACATACTCCCTCTGTCCCAA 57.358 50.000 0.00 0.00 0.00 4.12
4496 7400 2.467880 GAACATACTCCCTCTGTCCCA 58.532 52.381 0.00 0.00 0.00 4.37
4497 7401 1.763545 GGAACATACTCCCTCTGTCCC 59.236 57.143 0.00 0.00 0.00 4.46
4498 7402 2.467880 TGGAACATACTCCCTCTGTCC 58.532 52.381 0.00 0.00 34.22 4.02
4507 7411 9.125026 AGTATTTTTCATCCATGGAACATACTC 57.875 33.333 20.67 5.17 41.79 2.59
4508 7412 9.125026 GAGTATTTTTCATCCATGGAACATACT 57.875 33.333 20.67 18.50 45.25 2.12
4576 7484 7.011482 GTGAACTATCAGCCTAATAACAACAGG 59.989 40.741 0.00 0.00 35.88 4.00
4591 7499 6.980978 CACAGGGTATACTTGTGAACTATCAG 59.019 42.308 24.42 5.57 35.88 2.90
4630 7538 8.676397 ATTTACCTGGGTAGTAACTAGAAACT 57.324 34.615 0.00 1.67 29.63 2.66
4637 7545 8.849543 TTATCAGATTTACCTGGGTAGTAACT 57.150 34.615 0.00 0.00 34.99 2.24
4756 7669 8.499162 CAGGAAAAGTTAGAACATCTTGTACTG 58.501 37.037 0.00 0.00 33.02 2.74
4757 7670 8.429641 TCAGGAAAAGTTAGAACATCTTGTACT 58.570 33.333 0.00 0.00 0.00 2.73
4758 7671 8.603242 TCAGGAAAAGTTAGAACATCTTGTAC 57.397 34.615 0.00 0.00 0.00 2.90
4854 7779 4.472108 ACCTCCGTTCCCAATTATAAGACA 59.528 41.667 0.00 0.00 0.00 3.41
4894 7819 9.838339 GGGGACTATATAGAAATGTGGATAATG 57.162 37.037 16.79 0.00 0.00 1.90
4895 7820 9.574577 TGGGGACTATATAGAAATGTGGATAAT 57.425 33.333 16.79 0.00 0.00 1.28
4908 7833 6.092670 CGTGATGCAAATTGGGGACTATATAG 59.907 42.308 8.27 8.27 0.00 1.31
4988 7914 6.032094 CCAAGAAGCAGCACAATTAACATAG 58.968 40.000 0.00 0.00 0.00 2.23
4994 7920 4.340666 TGAAACCAAGAAGCAGCACAATTA 59.659 37.500 0.00 0.00 0.00 1.40
5042 7968 0.249955 CCCCAATCACAATGGCAACC 59.750 55.000 0.00 0.00 36.58 3.77
5106 8032 1.339342 GGCCGGCTTCCTTGTTTAGTA 60.339 52.381 28.56 0.00 0.00 1.82
5121 8047 1.208535 TCCAGTGTTATAACAGGCCGG 59.791 52.381 18.56 15.16 40.05 6.13
5123 8049 3.906720 TCTCCAGTGTTATAACAGGCC 57.093 47.619 18.56 7.50 40.05 5.19
5125 8051 7.979444 TTTCTTTCTCCAGTGTTATAACAGG 57.021 36.000 18.56 16.42 40.05 4.00
5162 8091 4.371786 GGATACAAGTCATCGAAGCATCA 58.628 43.478 0.00 0.00 0.00 3.07
5209 8138 2.956333 AGGTGTAAAGGTGGCTTCAAAC 59.044 45.455 0.00 0.00 0.00 2.93
5218 8147 3.185797 GCTTGTAACGAGGTGTAAAGGTG 59.814 47.826 0.00 0.00 0.00 4.00
5232 8161 8.289618 TCATTCACTTGAATAACTGCTTGTAAC 58.710 33.333 4.14 0.00 42.41 2.50
5243 8172 7.881142 ACCAACGAATTCATTCACTTGAATAA 58.119 30.769 6.22 1.51 43.73 1.40
5256 8185 7.037438 GGTCTATACTACAACCAACGAATTCA 58.963 38.462 6.22 0.00 0.00 2.57
5319 8248 4.606961 GACTCTACAGAGCTCTTGTATGC 58.393 47.826 15.27 6.38 45.79 3.14
5451 8380 0.523072 AATGCTGTCGAACATGGCAC 59.477 50.000 0.00 0.00 33.12 5.01
5474 8403 0.865111 TTTCATCGTCGCACACAAGG 59.135 50.000 0.00 0.00 0.00 3.61
5484 8413 2.143122 TGCTGTCCAACTTTCATCGTC 58.857 47.619 0.00 0.00 0.00 4.20
5503 8432 6.536582 GCTAGAGTGTACCATGGCATATTATG 59.463 42.308 13.04 0.00 0.00 1.90
5504 8433 6.213397 TGCTAGAGTGTACCATGGCATATTAT 59.787 38.462 13.04 0.00 0.00 1.28
5505 8434 5.542251 TGCTAGAGTGTACCATGGCATATTA 59.458 40.000 13.04 0.00 0.00 0.98
5506 8435 4.347876 TGCTAGAGTGTACCATGGCATATT 59.652 41.667 13.04 0.00 0.00 1.28
5507 8436 3.903714 TGCTAGAGTGTACCATGGCATAT 59.096 43.478 13.04 0.00 0.00 1.78
5508 8437 3.304829 TGCTAGAGTGTACCATGGCATA 58.695 45.455 13.04 0.00 0.00 3.14
5509 8438 2.118679 TGCTAGAGTGTACCATGGCAT 58.881 47.619 13.04 0.00 0.00 4.40
5510 8439 1.567357 TGCTAGAGTGTACCATGGCA 58.433 50.000 13.04 0.00 0.00 4.92
5511 8440 2.760374 GATGCTAGAGTGTACCATGGC 58.240 52.381 13.04 0.00 0.00 4.40
5512 8441 2.288457 CCGATGCTAGAGTGTACCATGG 60.288 54.545 11.19 11.19 0.00 3.66
5513 8442 2.362397 ACCGATGCTAGAGTGTACCATG 59.638 50.000 0.00 0.00 0.00 3.66
5514 8443 2.623889 GACCGATGCTAGAGTGTACCAT 59.376 50.000 0.00 0.00 0.00 3.55
5515 8444 2.022195 GACCGATGCTAGAGTGTACCA 58.978 52.381 0.00 0.00 0.00 3.25
5516 8445 2.299521 AGACCGATGCTAGAGTGTACC 58.700 52.381 0.00 0.00 0.00 3.34
5533 8462 6.514947 AGATCATGCTGAGATAAGACAAGAC 58.485 40.000 0.00 0.00 0.00 3.01
5534 8463 6.728089 AGATCATGCTGAGATAAGACAAGA 57.272 37.500 0.00 0.00 0.00 3.02
5535 8464 7.211573 AGAAGATCATGCTGAGATAAGACAAG 58.788 38.462 0.00 0.00 0.00 3.16
5537 8466 6.550481 AGAGAAGATCATGCTGAGATAAGACA 59.450 38.462 0.00 0.00 0.00 3.41
5538 8467 6.985117 AGAGAAGATCATGCTGAGATAAGAC 58.015 40.000 0.00 0.00 0.00 3.01
5547 8478 6.594547 CCAATGGTATAGAGAAGATCATGCTG 59.405 42.308 0.00 0.00 0.00 4.41
5549 8480 5.879223 CCCAATGGTATAGAGAAGATCATGC 59.121 44.000 0.00 0.00 0.00 4.06
5568 8499 6.006449 GCTCAATAATCTCCACATACCCAAT 58.994 40.000 0.00 0.00 0.00 3.16
5580 8511 1.789464 CGTCGCAGGCTCAATAATCTC 59.211 52.381 0.00 0.00 0.00 2.75
5610 8546 3.264193 TCACCAATGACTGTAGCATTCCT 59.736 43.478 0.00 0.00 33.93 3.36
5634 8576 3.865745 AGGAAAGAATATCAGACGCAACG 59.134 43.478 0.00 0.00 0.00 4.10
5643 8585 4.260743 CGCGATTGCAAGGAAAGAATATCA 60.261 41.667 0.00 0.00 42.97 2.15
5666 8615 4.440663 GCATTCCTTTTAGATGAGTTGCCC 60.441 45.833 0.00 0.00 0.00 5.36
5675 8624 2.435372 TGCCCGCATTCCTTTTAGAT 57.565 45.000 0.00 0.00 0.00 1.98
5684 8633 3.654020 GCCGAGATGCCCGCATTC 61.654 66.667 3.24 3.28 36.70 2.67
5707 8656 1.898574 ACTTGGGTGCGCTGAAAGG 60.899 57.895 9.73 0.00 0.00 3.11
5717 8666 4.156556 CCTGTTATGTCATTCACTTGGGTG 59.843 45.833 0.00 0.00 44.23 4.61
5718 8667 4.335416 CCTGTTATGTCATTCACTTGGGT 58.665 43.478 0.00 0.00 0.00 4.51
5719 8668 3.696051 CCCTGTTATGTCATTCACTTGGG 59.304 47.826 0.00 2.24 0.00 4.12
5724 8673 4.454504 ACGAAACCCTGTTATGTCATTCAC 59.545 41.667 0.00 0.00 0.00 3.18
5729 8678 3.395639 GTCACGAAACCCTGTTATGTCA 58.604 45.455 0.00 0.00 0.00 3.58
5769 8724 2.376808 AATCTTCAGCTCCTGTCGTG 57.623 50.000 0.00 0.00 32.61 4.35
5814 8769 8.082852 ACACTAGTAGTAATAATCATGCCTTCG 58.917 37.037 1.57 0.00 0.00 3.79
5834 8789 8.495361 ACTCACTCTGTAATACAGTACACTAG 57.505 38.462 18.71 10.76 46.03 2.57
5835 8790 7.551974 GGACTCACTCTGTAATACAGTACACTA 59.448 40.741 18.71 0.00 46.03 2.74
5836 8791 6.374894 GGACTCACTCTGTAATACAGTACACT 59.625 42.308 18.71 0.68 46.03 3.55
5837 8792 6.404513 GGGACTCACTCTGTAATACAGTACAC 60.405 46.154 18.71 6.69 46.03 2.90
5838 8793 5.651139 GGGACTCACTCTGTAATACAGTACA 59.349 44.000 18.71 0.65 46.03 2.90
5874 8829 4.932200 AGTGACTGAAATGAATCGGAAGTC 59.068 41.667 0.00 0.00 34.52 3.01
5942 8904 2.127232 GGGGCGAATGTTCCATGGG 61.127 63.158 13.02 0.00 0.00 4.00
5957 8919 4.787286 TGCAACATACGGGCGGGG 62.787 66.667 0.00 0.00 0.00 5.73
5963 8925 1.858091 CTAGCCTCTGCAACATACGG 58.142 55.000 0.00 0.00 41.13 4.02
6020 8997 6.379417 ACTGATTTCATTCCCCTTTCTTCATC 59.621 38.462 0.00 0.00 0.00 2.92
6022 8999 5.644188 ACTGATTTCATTCCCCTTTCTTCA 58.356 37.500 0.00 0.00 0.00 3.02
6076 9053 0.109039 GTCCTGCTCTGAAGACCGAC 60.109 60.000 0.00 0.00 0.00 4.79
6086 9064 1.277557 GGTGATGTGAAGTCCTGCTCT 59.722 52.381 0.00 0.00 0.00 4.09
6096 9074 2.359850 GCGGCAGGGTGATGTGAA 60.360 61.111 0.00 0.00 0.00 3.18
6108 9086 4.742649 AGAGAGGGAGTCGCGGCA 62.743 66.667 15.58 0.00 0.00 5.69
6122 9100 0.456142 TTGATTCGTCGTCCGCAGAG 60.456 55.000 0.00 0.00 36.19 3.35
6123 9101 0.456142 CTTGATTCGTCGTCCGCAGA 60.456 55.000 0.00 0.00 36.19 4.26
6124 9102 0.456142 TCTTGATTCGTCGTCCGCAG 60.456 55.000 0.00 0.00 36.19 5.18
6125 9103 0.456142 CTCTTGATTCGTCGTCCGCA 60.456 55.000 0.00 0.00 36.19 5.69
6126 9104 1.140407 CCTCTTGATTCGTCGTCCGC 61.140 60.000 0.00 0.00 36.19 5.54
6129 9107 2.223386 CCTCTCCTCTTGATTCGTCGTC 60.223 54.545 0.00 0.00 0.00 4.20
6131 9109 2.017782 TCCTCTCCTCTTGATTCGTCG 58.982 52.381 0.00 0.00 0.00 5.12
6132 9110 2.223386 CGTCCTCTCCTCTTGATTCGTC 60.223 54.545 0.00 0.00 0.00 4.20
6134 9112 2.017782 TCGTCCTCTCCTCTTGATTCG 58.982 52.381 0.00 0.00 0.00 3.34
6135 9113 3.383185 ACATCGTCCTCTCCTCTTGATTC 59.617 47.826 0.00 0.00 0.00 2.52
6136 9114 3.370104 ACATCGTCCTCTCCTCTTGATT 58.630 45.455 0.00 0.00 0.00 2.57
6137 9115 2.955660 GACATCGTCCTCTCCTCTTGAT 59.044 50.000 0.00 0.00 0.00 2.57
6138 9116 2.290960 TGACATCGTCCTCTCCTCTTGA 60.291 50.000 0.00 0.00 0.00 3.02
6139 9117 2.095461 TGACATCGTCCTCTCCTCTTG 58.905 52.381 0.00 0.00 0.00 3.02
6140 9118 2.025793 TCTGACATCGTCCTCTCCTCTT 60.026 50.000 0.00 0.00 0.00 2.85
6141 9119 1.562008 TCTGACATCGTCCTCTCCTCT 59.438 52.381 0.00 0.00 0.00 3.69
6142 9120 2.045561 TCTGACATCGTCCTCTCCTC 57.954 55.000 0.00 0.00 0.00 3.71
6143 9121 2.746279 ATCTGACATCGTCCTCTCCT 57.254 50.000 0.00 0.00 0.00 3.69
6144 9122 3.252215 CAGTATCTGACATCGTCCTCTCC 59.748 52.174 0.00 0.00 32.44 3.71
6145 9123 3.880490 ACAGTATCTGACATCGTCCTCTC 59.120 47.826 3.70 0.00 35.18 3.20
6158 9136 5.034797 TGATCGAAGCGTAAACAGTATCTG 58.965 41.667 0.00 0.00 37.52 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.