Multiple sequence alignment - TraesCS5A01G427200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G427200 chr5A 100.000 3069 0 0 1 3069 611977932 611974864 0.000000e+00 5668.0
1 TraesCS5A01G427200 chr5A 96.407 334 11 1 1 333 124622845 124623178 1.610000e-152 549.0
2 TraesCS5A01G427200 chr5A 83.402 241 25 7 379 617 688521874 688522101 3.100000e-50 209.0
3 TraesCS5A01G427200 chr5A 92.593 54 4 0 1 54 370261994 370261941 9.120000e-11 78.7
4 TraesCS5A01G427200 chr5B 94.459 2256 88 20 383 2627 604858080 604855851 0.000000e+00 3439.0
5 TraesCS5A01G427200 chr5B 76.860 242 27 14 379 617 491638391 491638176 3.240000e-20 110.0
6 TraesCS5A01G427200 chr5B 94.444 54 2 1 193 245 117937489 117937542 7.050000e-12 82.4
7 TraesCS5A01G427200 chr5B 94.444 54 2 1 193 245 117938236 117938289 7.050000e-12 82.4
8 TraesCS5A01G427200 chr5B 97.674 43 1 0 38 80 471403498 471403456 1.180000e-09 75.0
9 TraesCS5A01G427200 chr5D 92.238 2332 98 19 330 2623 441569420 441567134 0.000000e+00 3227.0
10 TraesCS5A01G427200 chr5D 92.381 1680 70 17 959 2627 490431474 490429842 0.000000e+00 2340.0
11 TraesCS5A01G427200 chr5D 95.179 560 25 2 330 887 490437193 490436634 0.000000e+00 883.0
12 TraesCS5A01G427200 chr5D 95.604 91 4 0 873 963 490436622 490436532 2.470000e-31 147.0
13 TraesCS5A01G427200 chr5D 97.674 43 1 0 38 80 391374897 391374855 1.180000e-09 75.0
14 TraesCS5A01G427200 chr5D 93.478 46 2 1 38 82 319252176 319252131 1.970000e-07 67.6
15 TraesCS5A01G427200 chr6A 92.505 2295 83 26 332 2615 29577661 29579877 0.000000e+00 3203.0
16 TraesCS5A01G427200 chr7D 93.797 2144 110 14 330 2464 44716952 44714823 0.000000e+00 3201.0
17 TraesCS5A01G427200 chr7D 93.696 349 21 1 2325 2673 44714828 44714481 3.510000e-144 521.0
18 TraesCS5A01G427200 chr6D 92.752 2249 91 18 330 2561 28310372 28308179 0.000000e+00 3184.0
19 TraesCS5A01G427200 chr6D 94.900 1608 56 14 680 2280 420225684 420224096 0.000000e+00 2492.0
20 TraesCS5A01G427200 chr6D 95.588 340 14 1 1 339 420227998 420227659 7.480000e-151 544.0
21 TraesCS5A01G427200 chr6D 97.561 41 1 0 2587 2627 28308179 28308139 1.530000e-08 71.3
22 TraesCS5A01G427200 chr7A 94.200 1793 79 14 330 2116 47295004 47293231 0.000000e+00 2712.0
23 TraesCS5A01G427200 chr7A 91.311 610 30 8 2072 2673 47293235 47292641 0.000000e+00 811.0
24 TraesCS5A01G427200 chr7A 84.810 79 9 3 2 79 206943076 206943152 3.280000e-10 76.8
25 TraesCS5A01G427200 chr4A 95.846 337 10 3 4 339 581492589 581492256 2.690000e-150 542.0
26 TraesCS5A01G427200 chr4A 83.113 302 43 6 1764 2062 542043329 542043033 5.040000e-68 268.0
27 TraesCS5A01G427200 chr4A 90.066 151 15 0 2919 3069 15891691 15891541 2.410000e-46 196.0
28 TraesCS5A01G427200 chr4A 84.354 147 23 0 2919 3065 682761785 682761931 8.870000e-31 145.0
29 TraesCS5A01G427200 chr3A 91.409 291 21 2 2033 2322 128520874 128520587 2.220000e-106 396.0
30 TraesCS5A01G427200 chr6B 90.456 241 21 1 585 825 25279064 25279302 1.780000e-82 316.0
31 TraesCS5A01G427200 chr3B 86.940 268 25 3 75 333 229467938 229468204 2.990000e-75 292.0
32 TraesCS5A01G427200 chr3B 83.117 77 13 0 2 78 551005039 551005115 1.530000e-08 71.3
33 TraesCS5A01G427200 chr1D 84.591 318 15 9 1735 2048 310148264 310148551 5.010000e-73 285.0
34 TraesCS5A01G427200 chr1A 93.889 180 9 2 2033 2210 389877111 389877290 1.400000e-68 270.0
35 TraesCS5A01G427200 chr1A 95.556 45 2 0 38 82 344476087 344476043 4.240000e-09 73.1
36 TraesCS5A01G427200 chr2B 82.857 280 36 5 330 598 138115669 138115391 1.100000e-59 241.0
37 TraesCS5A01G427200 chr4D 84.337 249 31 8 1218 1458 55035482 55035730 1.420000e-58 237.0
38 TraesCS5A01G427200 chr4D 88.000 150 18 0 2919 3068 451056155 451056304 8.740000e-41 178.0
39 TraesCS5A01G427200 chr4D 90.698 43 4 0 38 80 138406319 138406361 1.190000e-04 58.4
40 TraesCS5A01G427200 chr4B 94.444 54 2 1 193 245 422774847 422774794 7.050000e-12 82.4
41 TraesCS5A01G427200 chr4B 94.444 54 2 1 193 245 440442251 440442304 7.050000e-12 82.4
42 TraesCS5A01G427200 chr1B 94.444 54 2 1 193 245 368082372 368082425 7.050000e-12 82.4
43 TraesCS5A01G427200 chr2D 81.395 86 5 3 2 76 74149817 74149732 3.300000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G427200 chr5A 611974864 611977932 3068 True 5668.00 5668 100.0000 1 3069 1 chr5A.!!$R2 3068
1 TraesCS5A01G427200 chr5B 604855851 604858080 2229 True 3439.00 3439 94.4590 383 2627 1 chr5B.!!$R3 2244
2 TraesCS5A01G427200 chr5D 441567134 441569420 2286 True 3227.00 3227 92.2380 330 2623 1 chr5D.!!$R3 2293
3 TraesCS5A01G427200 chr5D 490429842 490431474 1632 True 2340.00 2340 92.3810 959 2627 1 chr5D.!!$R4 1668
4 TraesCS5A01G427200 chr5D 490436532 490437193 661 True 515.00 883 95.3915 330 963 2 chr5D.!!$R5 633
5 TraesCS5A01G427200 chr6A 29577661 29579877 2216 False 3203.00 3203 92.5050 332 2615 1 chr6A.!!$F1 2283
6 TraesCS5A01G427200 chr7D 44714481 44716952 2471 True 1861.00 3201 93.7465 330 2673 2 chr7D.!!$R1 2343
7 TraesCS5A01G427200 chr6D 28308139 28310372 2233 True 1627.65 3184 95.1565 330 2627 2 chr6D.!!$R1 2297
8 TraesCS5A01G427200 chr6D 420224096 420227998 3902 True 1518.00 2492 95.2440 1 2280 2 chr6D.!!$R2 2279
9 TraesCS5A01G427200 chr7A 47292641 47295004 2363 True 1761.50 2712 92.7555 330 2673 2 chr7A.!!$R1 2343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 2656 0.163146 GTGCGCTGGTTTTCGACTAC 59.837 55.0 9.73 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2900 4855 0.033366 GGGCTTTGTTTGGTTGCGAT 59.967 50.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 7.572523 ATGATGTTTTCACTCTTTTGTCAGA 57.427 32.000 0.00 0.00 37.11 3.27
135 136 9.734620 TCACTCTTTTGTCAGATTAACAATTTG 57.265 29.630 0.00 0.00 36.57 2.32
147 148 8.776470 CAGATTAACAATTTGCATTGACCTTTT 58.224 29.630 7.04 0.00 42.35 2.27
148 149 9.995003 AGATTAACAATTTGCATTGACCTTTTA 57.005 25.926 7.04 0.00 42.35 1.52
175 176 5.393352 GCACCTTTGATTGTAATCAGCATCA 60.393 40.000 7.30 0.00 45.35 3.07
187 188 4.978083 ATCAGCATCAAATGGTTGTCTC 57.022 40.909 0.00 0.00 39.29 3.36
280 282 9.971744 GCAATTGTATTCATTTTAATGTTCACC 57.028 29.630 7.40 0.00 37.65 4.02
282 284 8.925161 ATTGTATTCATTTTAATGTTCACCGG 57.075 30.769 0.00 0.00 37.65 5.28
326 328 8.954950 TGATATGAAGCTAAGAGGAAGAAAAG 57.045 34.615 0.00 0.00 0.00 2.27
352 355 9.665264 GTAAGAGAAAATTTACTTCACTGGTTG 57.335 33.333 7.96 0.00 0.00 3.77
377 380 4.508662 AGGAATCCATCTCACGTTTTCTC 58.491 43.478 0.61 0.00 0.00 2.87
477 483 1.002659 ACAATGGCAGCAATGCACAAT 59.997 42.857 8.35 0.00 36.33 2.71
508 907 6.924612 TCAGTGTTAGCGTGTACTTATTTCAA 59.075 34.615 0.00 0.00 0.00 2.69
530 929 3.873910 AGATGATTGGAGTAACCGTTGG 58.126 45.455 0.00 0.00 42.61 3.77
550 949 1.973281 CGGTTCAGCAGCCACCATT 60.973 57.895 6.79 0.00 0.00 3.16
567 966 6.198966 GCCACCATTTAATCGAATCACAATTC 59.801 38.462 0.00 0.00 38.34 2.17
586 985 7.225538 CACAATTCATAGACTAGTAGGCAAAGG 59.774 40.741 5.63 0.00 0.00 3.11
941 2656 0.163146 GTGCGCTGGTTTTCGACTAC 59.837 55.000 9.73 0.00 0.00 2.73
968 2683 9.895138 TTGATCTAATCATCTTGAATTGACAGA 57.105 29.630 0.00 0.00 39.39 3.41
969 2684 9.543783 TGATCTAATCATCTTGAATTGACAGAG 57.456 33.333 0.00 0.00 33.59 3.35
1011 2726 0.034574 TCGCAACCATGGCCTTACAT 60.035 50.000 13.04 0.00 0.00 2.29
1020 2735 2.869101 TGGCCTTACATTGCTACACA 57.131 45.000 3.32 0.00 0.00 3.72
1100 2815 0.686789 ATTCCAGGTTTGCTTTGCCC 59.313 50.000 0.00 0.00 0.00 5.36
1147 2862 6.095432 ACATCTCTCTGGAATATACACTGC 57.905 41.667 0.00 0.00 0.00 4.40
1248 2963 9.733556 TGAATATACACGAAATAATGGCCTTAT 57.266 29.630 3.32 2.88 0.00 1.73
1264 2979 2.952978 CCTTATAGAGTCAGTGCTCCGT 59.047 50.000 9.94 3.86 36.20 4.69
1383 3098 4.348863 AAGCTAGTAATCTCTGGCCATG 57.651 45.455 5.51 2.03 41.71 3.66
1384 3099 2.038295 AGCTAGTAATCTCTGGCCATGC 59.962 50.000 5.51 0.00 41.71 4.06
1716 3442 9.945904 AAATAAACTGTTTCTTTTTGGGTGTTA 57.054 25.926 9.38 0.00 0.00 2.41
1847 3574 7.750229 TTAGTACTTTGTTCCGAGAGTCTTA 57.250 36.000 0.00 0.00 0.00 2.10
2295 4073 6.044512 AGCTAATAAGTTGTATTTTCGGCG 57.955 37.500 0.00 0.00 0.00 6.46
2356 4134 5.793817 ACTATTGTACTGTGAACTGATGCA 58.206 37.500 0.00 0.00 0.00 3.96
2392 4170 7.990314 ACTTTTATTTGTAGTTTGGCCAACATT 59.010 29.630 20.35 9.26 37.93 2.71
2491 4417 0.532573 GTCTCGGCCTCAGACATGAA 59.467 55.000 21.35 0.00 40.18 2.57
2584 4537 5.303589 AGCTTAAGTTGTAGTGGTGTAGTCA 59.696 40.000 4.02 0.00 0.00 3.41
2636 4591 2.561478 ATGTGCCCGTAGTGAGTTTT 57.439 45.000 0.00 0.00 0.00 2.43
2678 4633 8.830201 ATTATTTGTGCAAATTTTAGCTGTGA 57.170 26.923 14.29 0.00 40.99 3.58
2679 4634 8.830201 TTATTTGTGCAAATTTTAGCTGTGAT 57.170 26.923 14.29 0.00 40.99 3.06
2680 4635 6.768029 TTTGTGCAAATTTTAGCTGTGATC 57.232 33.333 0.00 0.00 0.00 2.92
2681 4636 5.710513 TGTGCAAATTTTAGCTGTGATCT 57.289 34.783 0.00 0.00 0.00 2.75
2682 4637 5.463286 TGTGCAAATTTTAGCTGTGATCTG 58.537 37.500 0.00 0.00 0.00 2.90
2683 4638 5.241285 TGTGCAAATTTTAGCTGTGATCTGA 59.759 36.000 0.00 0.00 0.00 3.27
2684 4639 6.071784 TGTGCAAATTTTAGCTGTGATCTGAT 60.072 34.615 0.00 0.00 0.00 2.90
2685 4640 6.252869 GTGCAAATTTTAGCTGTGATCTGATG 59.747 38.462 0.00 0.00 0.00 3.07
2686 4641 6.071784 TGCAAATTTTAGCTGTGATCTGATGT 60.072 34.615 0.00 0.00 0.00 3.06
2687 4642 6.252869 GCAAATTTTAGCTGTGATCTGATGTG 59.747 38.462 0.00 0.00 0.00 3.21
2688 4643 7.310664 CAAATTTTAGCTGTGATCTGATGTGT 58.689 34.615 0.00 0.00 0.00 3.72
2689 4644 7.458409 AATTTTAGCTGTGATCTGATGTGTT 57.542 32.000 0.00 0.00 0.00 3.32
2690 4645 8.565896 AATTTTAGCTGTGATCTGATGTGTTA 57.434 30.769 0.00 0.00 0.00 2.41
2691 4646 8.743085 ATTTTAGCTGTGATCTGATGTGTTAT 57.257 30.769 0.00 0.00 0.00 1.89
2692 4647 9.836864 ATTTTAGCTGTGATCTGATGTGTTATA 57.163 29.630 0.00 0.00 0.00 0.98
2693 4648 8.648557 TTTAGCTGTGATCTGATGTGTTATAC 57.351 34.615 0.00 0.00 0.00 1.47
2694 4649 5.605534 AGCTGTGATCTGATGTGTTATACC 58.394 41.667 0.00 0.00 0.00 2.73
2695 4650 5.129320 AGCTGTGATCTGATGTGTTATACCA 59.871 40.000 0.00 0.00 0.00 3.25
2696 4651 5.817296 GCTGTGATCTGATGTGTTATACCAA 59.183 40.000 0.00 0.00 0.00 3.67
2697 4652 6.316140 GCTGTGATCTGATGTGTTATACCAAA 59.684 38.462 0.00 0.00 0.00 3.28
2698 4653 7.466455 GCTGTGATCTGATGTGTTATACCAAAG 60.466 40.741 0.00 0.00 0.00 2.77
2699 4654 6.823182 TGTGATCTGATGTGTTATACCAAAGG 59.177 38.462 0.00 0.00 0.00 3.11
2700 4655 6.823689 GTGATCTGATGTGTTATACCAAAGGT 59.176 38.462 0.00 0.00 40.16 3.50
2701 4656 7.336931 GTGATCTGATGTGTTATACCAAAGGTT 59.663 37.037 0.00 0.00 37.09 3.50
2702 4657 7.888021 TGATCTGATGTGTTATACCAAAGGTTT 59.112 33.333 0.00 0.00 37.09 3.27
2703 4658 7.447374 TCTGATGTGTTATACCAAAGGTTTG 57.553 36.000 0.00 0.00 37.09 2.93
2704 4659 7.001674 TCTGATGTGTTATACCAAAGGTTTGT 58.998 34.615 0.00 0.00 37.09 2.83
2705 4660 8.158132 TCTGATGTGTTATACCAAAGGTTTGTA 58.842 33.333 0.00 0.00 37.09 2.41
2706 4661 8.871629 TGATGTGTTATACCAAAGGTTTGTAT 57.128 30.769 0.00 3.33 37.09 2.29
2707 4662 8.735315 TGATGTGTTATACCAAAGGTTTGTATG 58.265 33.333 0.00 0.00 37.09 2.39
2708 4663 8.644374 ATGTGTTATACCAAAGGTTTGTATGT 57.356 30.769 0.00 0.00 37.09 2.29
2709 4664 8.466617 TGTGTTATACCAAAGGTTTGTATGTT 57.533 30.769 0.00 0.00 37.09 2.71
2710 4665 8.353684 TGTGTTATACCAAAGGTTTGTATGTTG 58.646 33.333 0.00 0.00 37.09 3.33
2711 4666 8.354426 GTGTTATACCAAAGGTTTGTATGTTGT 58.646 33.333 0.00 0.00 37.09 3.32
2712 4667 8.353684 TGTTATACCAAAGGTTTGTATGTTGTG 58.646 33.333 0.00 0.00 37.09 3.33
2713 4668 6.969993 ATACCAAAGGTTTGTATGTTGTGT 57.030 33.333 0.00 0.00 37.09 3.72
2714 4669 5.004922 ACCAAAGGTTTGTATGTTGTGTG 57.995 39.130 1.94 0.00 36.45 3.82
2715 4670 4.464597 ACCAAAGGTTTGTATGTTGTGTGT 59.535 37.500 1.94 0.00 36.45 3.72
2716 4671 4.803088 CCAAAGGTTTGTATGTTGTGTGTG 59.197 41.667 1.94 0.00 36.45 3.82
2717 4672 5.393569 CCAAAGGTTTGTATGTTGTGTGTGA 60.394 40.000 1.94 0.00 36.45 3.58
2718 4673 5.499139 AAGGTTTGTATGTTGTGTGTGAG 57.501 39.130 0.00 0.00 0.00 3.51
2719 4674 3.882888 AGGTTTGTATGTTGTGTGTGAGG 59.117 43.478 0.00 0.00 0.00 3.86
2720 4675 3.004315 GGTTTGTATGTTGTGTGTGAGGG 59.996 47.826 0.00 0.00 0.00 4.30
2721 4676 3.847671 TTGTATGTTGTGTGTGAGGGA 57.152 42.857 0.00 0.00 0.00 4.20
2722 4677 4.365514 TTGTATGTTGTGTGTGAGGGAT 57.634 40.909 0.00 0.00 0.00 3.85
2723 4678 4.365514 TGTATGTTGTGTGTGAGGGATT 57.634 40.909 0.00 0.00 0.00 3.01
2724 4679 4.724399 TGTATGTTGTGTGTGAGGGATTT 58.276 39.130 0.00 0.00 0.00 2.17
2725 4680 4.759693 TGTATGTTGTGTGTGAGGGATTTC 59.240 41.667 0.00 0.00 0.00 2.17
2726 4681 2.582052 TGTTGTGTGTGAGGGATTTCC 58.418 47.619 0.00 0.00 0.00 3.13
2736 4691 4.242602 GGATTTCCTTCCCTGCCG 57.757 61.111 0.00 0.00 0.00 5.69
2737 4692 1.303282 GGATTTCCTTCCCTGCCGT 59.697 57.895 0.00 0.00 0.00 5.68
2738 4693 0.323451 GGATTTCCTTCCCTGCCGTT 60.323 55.000 0.00 0.00 0.00 4.44
2739 4694 0.811281 GATTTCCTTCCCTGCCGTTG 59.189 55.000 0.00 0.00 0.00 4.10
2740 4695 0.112412 ATTTCCTTCCCTGCCGTTGT 59.888 50.000 0.00 0.00 0.00 3.32
2741 4696 0.106419 TTTCCTTCCCTGCCGTTGTT 60.106 50.000 0.00 0.00 0.00 2.83
2742 4697 0.821711 TTCCTTCCCTGCCGTTGTTG 60.822 55.000 0.00 0.00 0.00 3.33
2743 4698 2.644992 CTTCCCTGCCGTTGTTGC 59.355 61.111 0.00 0.00 0.00 4.17
2744 4699 2.909965 TTCCCTGCCGTTGTTGCC 60.910 61.111 0.00 0.00 0.00 4.52
2745 4700 3.723097 TTCCCTGCCGTTGTTGCCA 62.723 57.895 0.00 0.00 0.00 4.92
2746 4701 2.990967 CCCTGCCGTTGTTGCCAT 60.991 61.111 0.00 0.00 0.00 4.40
2747 4702 2.573083 CCCTGCCGTTGTTGCCATT 61.573 57.895 0.00 0.00 0.00 3.16
2748 4703 1.367102 CCTGCCGTTGTTGCCATTT 59.633 52.632 0.00 0.00 0.00 2.32
2749 4704 0.667184 CCTGCCGTTGTTGCCATTTC 60.667 55.000 0.00 0.00 0.00 2.17
2750 4705 1.003262 CTGCCGTTGTTGCCATTTCG 61.003 55.000 0.00 0.00 0.00 3.46
2751 4706 1.732683 GCCGTTGTTGCCATTTCGG 60.733 57.895 0.00 0.00 40.72 4.30
2760 4715 2.354729 CCATTTCGGCACCAGGGA 59.645 61.111 0.00 0.00 0.00 4.20
2761 4716 1.076777 CCATTTCGGCACCAGGGAT 60.077 57.895 0.00 0.00 0.00 3.85
2762 4717 0.182537 CCATTTCGGCACCAGGGATA 59.817 55.000 0.00 0.00 0.00 2.59
2763 4718 1.409521 CCATTTCGGCACCAGGGATAA 60.410 52.381 0.00 0.00 0.00 1.75
2764 4719 2.586425 CATTTCGGCACCAGGGATAAT 58.414 47.619 0.00 0.00 0.00 1.28
2765 4720 2.051334 TTTCGGCACCAGGGATAATG 57.949 50.000 0.00 0.00 0.00 1.90
2766 4721 0.182537 TTCGGCACCAGGGATAATGG 59.817 55.000 0.00 0.00 43.87 3.16
2767 4722 1.228245 CGGCACCAGGGATAATGGG 60.228 63.158 0.00 0.00 42.48 4.00
2768 4723 1.153756 GGCACCAGGGATAATGGGG 59.846 63.158 0.00 0.00 44.62 4.96
2769 4724 1.360393 GGCACCAGGGATAATGGGGA 61.360 60.000 0.00 0.00 44.59 4.81
2770 4725 0.178990 GCACCAGGGATAATGGGGAC 60.179 60.000 0.00 0.00 44.59 4.46
2771 4726 1.522900 CACCAGGGATAATGGGGACT 58.477 55.000 0.00 0.00 44.59 3.85
2772 4727 1.852965 CACCAGGGATAATGGGGACTT 59.147 52.381 0.00 0.00 44.59 3.01
2773 4728 2.244769 CACCAGGGATAATGGGGACTTT 59.755 50.000 0.00 0.00 44.59 2.66
2774 4729 2.933139 ACCAGGGATAATGGGGACTTTT 59.067 45.455 0.00 0.00 42.48 2.27
2775 4730 3.052869 ACCAGGGATAATGGGGACTTTTC 60.053 47.826 0.00 0.00 42.48 2.29
2776 4731 3.566351 CAGGGATAATGGGGACTTTTCC 58.434 50.000 0.00 0.00 41.95 3.13
2784 4739 2.841317 GGACTTTTCCCCCGTGGT 59.159 61.111 0.00 0.00 35.57 4.16
2785 4740 1.602605 GGACTTTTCCCCCGTGGTG 60.603 63.158 0.00 0.00 35.57 4.17
2786 4741 1.452801 GACTTTTCCCCCGTGGTGA 59.547 57.895 0.00 0.00 34.77 4.02
2787 4742 0.605589 GACTTTTCCCCCGTGGTGAG 60.606 60.000 0.00 0.00 34.77 3.51
2788 4743 1.057851 ACTTTTCCCCCGTGGTGAGA 61.058 55.000 0.00 0.00 34.77 3.27
2789 4744 0.321653 CTTTTCCCCCGTGGTGAGAG 60.322 60.000 0.00 0.00 34.77 3.20
2790 4745 1.774894 TTTTCCCCCGTGGTGAGAGG 61.775 60.000 0.00 0.00 34.77 3.69
2791 4746 4.715130 TCCCCCGTGGTGAGAGGG 62.715 72.222 0.00 0.00 44.67 4.30
2795 4750 4.364318 CCGTGGTGAGAGGGATCT 57.636 61.111 0.00 0.00 0.00 2.75
2796 4751 2.119886 CCGTGGTGAGAGGGATCTC 58.880 63.158 0.00 0.00 40.25 2.75
2797 4752 0.684479 CCGTGGTGAGAGGGATCTCA 60.684 60.000 3.88 3.88 43.68 3.27
2798 4753 1.407936 CGTGGTGAGAGGGATCTCAT 58.592 55.000 10.87 0.00 46.81 2.90
2799 4754 2.587522 CGTGGTGAGAGGGATCTCATA 58.412 52.381 10.87 1.99 46.81 2.15
2800 4755 3.161067 CGTGGTGAGAGGGATCTCATAT 58.839 50.000 10.87 0.00 46.81 1.78
2801 4756 4.336280 CGTGGTGAGAGGGATCTCATATA 58.664 47.826 10.87 0.00 46.81 0.86
2802 4757 4.156922 CGTGGTGAGAGGGATCTCATATAC 59.843 50.000 10.87 9.33 46.81 1.47
2803 4758 4.464597 GTGGTGAGAGGGATCTCATATACC 59.535 50.000 10.87 8.10 46.81 2.73
2804 4759 4.027437 GGTGAGAGGGATCTCATATACCC 58.973 52.174 10.87 4.12 46.81 3.69
2805 4760 4.511112 GGTGAGAGGGATCTCATATACCCA 60.511 50.000 10.87 0.00 46.81 4.51
2806 4761 4.709397 GTGAGAGGGATCTCATATACCCAG 59.291 50.000 10.87 0.00 46.81 4.45
2807 4762 4.264577 TGAGAGGGATCTCATATACCCAGG 60.265 50.000 3.88 0.00 44.25 4.45
2808 4763 3.932562 AGAGGGATCTCATATACCCAGGA 59.067 47.826 0.00 0.00 44.25 3.86
2809 4764 4.361367 AGAGGGATCTCATATACCCAGGAA 59.639 45.833 0.00 0.00 44.25 3.36
2810 4765 5.094387 GAGGGATCTCATATACCCAGGAAA 58.906 45.833 0.00 0.00 44.25 3.13
2811 4766 5.486332 AGGGATCTCATATACCCAGGAAAA 58.514 41.667 0.00 0.00 44.25 2.29
2812 4767 6.101223 AGGGATCTCATATACCCAGGAAAAT 58.899 40.000 0.00 0.00 44.25 1.82
2813 4768 7.263901 AGGGATCTCATATACCCAGGAAAATA 58.736 38.462 0.00 0.00 44.25 1.40
2814 4769 7.182930 AGGGATCTCATATACCCAGGAAAATAC 59.817 40.741 0.00 0.00 44.25 1.89
2815 4770 7.339482 GGATCTCATATACCCAGGAAAATACC 58.661 42.308 0.00 0.00 0.00 2.73
2816 4771 6.697641 TCTCATATACCCAGGAAAATACCC 57.302 41.667 0.00 0.00 0.00 3.69
2817 4772 5.550403 TCTCATATACCCAGGAAAATACCCC 59.450 44.000 0.00 0.00 0.00 4.95
2818 4773 4.604490 TCATATACCCAGGAAAATACCCCC 59.396 45.833 0.00 0.00 0.00 5.40
2836 4791 2.198426 CAAGGGGCTTGGTGTGGT 59.802 61.111 0.00 0.00 37.77 4.16
2837 4792 2.198426 AAGGGGCTTGGTGTGGTG 59.802 61.111 0.00 0.00 0.00 4.17
2838 4793 4.603535 AGGGGCTTGGTGTGGTGC 62.604 66.667 0.00 0.00 0.00 5.01
2841 4796 4.912395 GGCTTGGTGTGGTGCCCA 62.912 66.667 0.00 0.00 39.49 5.36
2842 4797 3.297620 GCTTGGTGTGGTGCCCAG 61.298 66.667 0.00 0.00 32.34 4.45
2843 4798 2.598394 CTTGGTGTGGTGCCCAGG 60.598 66.667 0.00 0.00 32.34 4.45
2844 4799 4.217210 TTGGTGTGGTGCCCAGGG 62.217 66.667 0.00 0.00 32.34 4.45
2846 4801 4.218686 GGTGTGGTGCCCAGGGTT 62.219 66.667 7.55 0.00 32.34 4.11
2847 4802 2.836187 GGTGTGGTGCCCAGGGTTA 61.836 63.158 7.55 0.00 32.34 2.85
2848 4803 1.382629 GTGTGGTGCCCAGGGTTAT 59.617 57.895 7.55 0.00 32.34 1.89
2849 4804 0.621609 GTGTGGTGCCCAGGGTTATA 59.378 55.000 7.55 0.00 32.34 0.98
2850 4805 1.214424 GTGTGGTGCCCAGGGTTATAT 59.786 52.381 7.55 0.00 32.34 0.86
2851 4806 1.926665 TGTGGTGCCCAGGGTTATATT 59.073 47.619 7.55 0.00 32.34 1.28
2852 4807 2.313342 TGTGGTGCCCAGGGTTATATTT 59.687 45.455 7.55 0.00 32.34 1.40
2853 4808 3.245803 TGTGGTGCCCAGGGTTATATTTT 60.246 43.478 7.55 0.00 32.34 1.82
2854 4809 3.383505 GTGGTGCCCAGGGTTATATTTTC 59.616 47.826 7.55 0.00 32.34 2.29
2855 4810 2.963101 GGTGCCCAGGGTTATATTTTCC 59.037 50.000 7.55 0.00 0.00 3.13
2856 4811 2.963101 GTGCCCAGGGTTATATTTTCCC 59.037 50.000 7.55 0.00 41.36 3.97
2867 4822 8.073467 GGGTTATATTTTCCCTTCAAATCACA 57.927 34.615 0.00 0.00 38.29 3.58
2868 4823 8.197439 GGGTTATATTTTCCCTTCAAATCACAG 58.803 37.037 0.00 0.00 38.29 3.66
2869 4824 8.197439 GGTTATATTTTCCCTTCAAATCACAGG 58.803 37.037 0.00 0.00 0.00 4.00
2870 4825 8.749354 GTTATATTTTCCCTTCAAATCACAGGT 58.251 33.333 0.00 0.00 0.00 4.00
2871 4826 9.983024 TTATATTTTCCCTTCAAATCACAGGTA 57.017 29.630 0.00 0.00 0.00 3.08
2872 4827 8.893563 ATATTTTCCCTTCAAATCACAGGTAA 57.106 30.769 0.00 0.00 0.00 2.85
2873 4828 6.648879 TTTTCCCTTCAAATCACAGGTAAG 57.351 37.500 0.00 0.00 0.00 2.34
2874 4829 5.576563 TTCCCTTCAAATCACAGGTAAGA 57.423 39.130 0.00 0.00 0.00 2.10
2875 4830 5.779241 TCCCTTCAAATCACAGGTAAGAT 57.221 39.130 0.00 0.00 0.00 2.40
2876 4831 5.500234 TCCCTTCAAATCACAGGTAAGATG 58.500 41.667 0.00 0.00 0.00 2.90
2877 4832 5.250543 TCCCTTCAAATCACAGGTAAGATGA 59.749 40.000 0.00 0.00 0.00 2.92
2878 4833 5.945784 CCCTTCAAATCACAGGTAAGATGAA 59.054 40.000 0.00 0.00 0.00 2.57
2879 4834 6.434028 CCCTTCAAATCACAGGTAAGATGAAA 59.566 38.462 0.00 0.00 0.00 2.69
2880 4835 7.039784 CCCTTCAAATCACAGGTAAGATGAAAA 60.040 37.037 0.00 0.00 0.00 2.29
2881 4836 8.025445 CCTTCAAATCACAGGTAAGATGAAAAG 58.975 37.037 0.00 0.00 0.00 2.27
2882 4837 8.690203 TTCAAATCACAGGTAAGATGAAAAGA 57.310 30.769 0.00 0.00 0.00 2.52
2883 4838 8.327941 TCAAATCACAGGTAAGATGAAAAGAG 57.672 34.615 0.00 0.00 0.00 2.85
2884 4839 8.156820 TCAAATCACAGGTAAGATGAAAAGAGA 58.843 33.333 0.00 0.00 0.00 3.10
2885 4840 8.786898 CAAATCACAGGTAAGATGAAAAGAGAA 58.213 33.333 0.00 0.00 0.00 2.87
2886 4841 8.924511 AATCACAGGTAAGATGAAAAGAGAAA 57.075 30.769 0.00 0.00 0.00 2.52
2887 4842 9.525826 AATCACAGGTAAGATGAAAAGAGAAAT 57.474 29.630 0.00 0.00 0.00 2.17
2888 4843 8.553459 TCACAGGTAAGATGAAAAGAGAAATC 57.447 34.615 0.00 0.00 0.00 2.17
2889 4844 8.156820 TCACAGGTAAGATGAAAAGAGAAATCA 58.843 33.333 0.00 0.00 0.00 2.57
2890 4845 8.786898 CACAGGTAAGATGAAAAGAGAAATCAA 58.213 33.333 0.00 0.00 0.00 2.57
2891 4846 9.007901 ACAGGTAAGATGAAAAGAGAAATCAAG 57.992 33.333 0.00 0.00 0.00 3.02
2892 4847 7.967303 CAGGTAAGATGAAAAGAGAAATCAAGC 59.033 37.037 0.00 0.00 0.00 4.01
2893 4848 7.667219 AGGTAAGATGAAAAGAGAAATCAAGCA 59.333 33.333 0.00 0.00 0.00 3.91
2894 4849 7.967303 GGTAAGATGAAAAGAGAAATCAAGCAG 59.033 37.037 0.00 0.00 0.00 4.24
2895 4850 7.521871 AAGATGAAAAGAGAAATCAAGCAGT 57.478 32.000 0.00 0.00 0.00 4.40
2896 4851 7.521871 AGATGAAAAGAGAAATCAAGCAGTT 57.478 32.000 0.00 0.00 0.00 3.16
2897 4852 7.368833 AGATGAAAAGAGAAATCAAGCAGTTG 58.631 34.615 0.00 0.00 34.67 3.16
2898 4853 5.835257 TGAAAAGAGAAATCAAGCAGTTGG 58.165 37.500 0.00 0.00 34.09 3.77
2899 4854 5.593909 TGAAAAGAGAAATCAAGCAGTTGGA 59.406 36.000 0.00 0.00 34.09 3.53
2900 4855 6.096705 TGAAAAGAGAAATCAAGCAGTTGGAA 59.903 34.615 0.00 0.00 34.09 3.53
2901 4856 6.661304 AAAGAGAAATCAAGCAGTTGGAAT 57.339 33.333 0.00 0.00 34.09 3.01
2902 4857 5.893897 AGAGAAATCAAGCAGTTGGAATC 57.106 39.130 0.00 0.00 34.09 2.52
2903 4858 4.394300 AGAGAAATCAAGCAGTTGGAATCG 59.606 41.667 0.00 0.00 34.09 3.34
2904 4859 2.927553 AATCAAGCAGTTGGAATCGC 57.072 45.000 0.00 0.00 34.09 4.58
2905 4860 1.825090 ATCAAGCAGTTGGAATCGCA 58.175 45.000 0.00 0.00 34.09 5.10
2906 4861 1.603456 TCAAGCAGTTGGAATCGCAA 58.397 45.000 0.00 0.00 34.09 4.85
2907 4862 1.266718 TCAAGCAGTTGGAATCGCAAC 59.733 47.619 6.52 6.52 34.09 4.17
2908 4863 0.598065 AAGCAGTTGGAATCGCAACC 59.402 50.000 9.78 0.00 32.13 3.77
2909 4864 0.537143 AGCAGTTGGAATCGCAACCA 60.537 50.000 9.78 0.00 32.13 3.67
2910 4865 0.313672 GCAGTTGGAATCGCAACCAA 59.686 50.000 9.78 0.00 42.78 3.67
2911 4866 1.269517 GCAGTTGGAATCGCAACCAAA 60.270 47.619 0.00 0.00 45.75 3.28
2912 4867 2.393764 CAGTTGGAATCGCAACCAAAC 58.606 47.619 0.00 0.00 45.75 2.93
2913 4868 2.028130 AGTTGGAATCGCAACCAAACA 58.972 42.857 0.00 0.00 45.75 2.83
2914 4869 2.428890 AGTTGGAATCGCAACCAAACAA 59.571 40.909 0.00 0.00 45.75 2.83
2915 4870 3.118956 AGTTGGAATCGCAACCAAACAAA 60.119 39.130 0.00 0.00 45.75 2.83
2916 4871 3.090952 TGGAATCGCAACCAAACAAAG 57.909 42.857 0.00 0.00 32.93 2.77
2917 4872 1.792367 GGAATCGCAACCAAACAAAGC 59.208 47.619 0.00 0.00 0.00 3.51
2918 4873 1.792367 GAATCGCAACCAAACAAAGCC 59.208 47.619 0.00 0.00 0.00 4.35
2919 4874 0.033366 ATCGCAACCAAACAAAGCCC 59.967 50.000 0.00 0.00 0.00 5.19
2920 4875 1.040339 TCGCAACCAAACAAAGCCCT 61.040 50.000 0.00 0.00 0.00 5.19
2921 4876 0.671251 CGCAACCAAACAAAGCCCTA 59.329 50.000 0.00 0.00 0.00 3.53
2922 4877 1.335872 CGCAACCAAACAAAGCCCTAG 60.336 52.381 0.00 0.00 0.00 3.02
2923 4878 1.960689 GCAACCAAACAAAGCCCTAGA 59.039 47.619 0.00 0.00 0.00 2.43
2924 4879 2.029918 GCAACCAAACAAAGCCCTAGAG 60.030 50.000 0.00 0.00 0.00 2.43
2925 4880 2.558359 CAACCAAACAAAGCCCTAGAGG 59.442 50.000 0.00 0.00 39.47 3.69
2926 4881 1.780919 ACCAAACAAAGCCCTAGAGGT 59.219 47.619 0.00 0.00 38.26 3.85
2927 4882 2.983898 ACCAAACAAAGCCCTAGAGGTA 59.016 45.455 0.00 0.00 38.26 3.08
2928 4883 3.009143 ACCAAACAAAGCCCTAGAGGTAG 59.991 47.826 0.00 0.00 38.26 3.18
2929 4884 3.263425 CCAAACAAAGCCCTAGAGGTAGA 59.737 47.826 0.00 0.00 38.26 2.59
2930 4885 4.254492 CAAACAAAGCCCTAGAGGTAGAC 58.746 47.826 0.00 0.00 38.26 2.59
2931 4886 3.185880 ACAAAGCCCTAGAGGTAGACA 57.814 47.619 0.00 0.00 38.26 3.41
2932 4887 2.832733 ACAAAGCCCTAGAGGTAGACAC 59.167 50.000 0.00 0.00 38.26 3.67
2933 4888 2.162264 AAGCCCTAGAGGTAGACACC 57.838 55.000 0.00 0.00 46.19 4.16
2945 4900 4.476628 GGTAGACACCGGGAAAATAAGA 57.523 45.455 6.32 0.00 34.36 2.10
2946 4901 4.186926 GGTAGACACCGGGAAAATAAGAC 58.813 47.826 6.32 0.00 34.36 3.01
2947 4902 2.968675 AGACACCGGGAAAATAAGACG 58.031 47.619 6.32 0.00 0.00 4.18
2948 4903 1.395954 GACACCGGGAAAATAAGACGC 59.604 52.381 6.32 0.00 0.00 5.19
2949 4904 1.002773 ACACCGGGAAAATAAGACGCT 59.997 47.619 6.32 0.00 0.00 5.07
2950 4905 1.396996 CACCGGGAAAATAAGACGCTG 59.603 52.381 6.32 0.00 0.00 5.18
2951 4906 1.002773 ACCGGGAAAATAAGACGCTGT 59.997 47.619 6.32 0.00 0.00 4.40
2952 4907 2.081462 CCGGGAAAATAAGACGCTGTT 58.919 47.619 0.00 0.00 0.00 3.16
2953 4908 2.159572 CCGGGAAAATAAGACGCTGTTG 60.160 50.000 0.00 0.00 0.00 3.33
2954 4909 2.159572 CGGGAAAATAAGACGCTGTTGG 60.160 50.000 0.00 0.00 0.00 3.77
2955 4910 3.078837 GGGAAAATAAGACGCTGTTGGA 58.921 45.455 0.00 0.00 0.00 3.53
2956 4911 3.119955 GGGAAAATAAGACGCTGTTGGAC 60.120 47.826 0.00 0.00 0.00 4.02
2957 4912 3.119955 GGAAAATAAGACGCTGTTGGACC 60.120 47.826 0.00 0.00 0.00 4.46
2958 4913 1.722011 AATAAGACGCTGTTGGACCG 58.278 50.000 0.00 0.00 0.00 4.79
2959 4914 0.606604 ATAAGACGCTGTTGGACCGT 59.393 50.000 0.00 0.00 37.99 4.83
2960 4915 1.246649 TAAGACGCTGTTGGACCGTA 58.753 50.000 0.00 0.00 35.06 4.02
2961 4916 0.606604 AAGACGCTGTTGGACCGTAT 59.393 50.000 0.00 0.00 35.06 3.06
2962 4917 0.108804 AGACGCTGTTGGACCGTATG 60.109 55.000 0.00 0.00 35.06 2.39
2963 4918 0.108992 GACGCTGTTGGACCGTATGA 60.109 55.000 0.00 0.00 35.06 2.15
2964 4919 0.319083 ACGCTGTTGGACCGTATGAA 59.681 50.000 0.00 0.00 32.86 2.57
2965 4920 1.066430 ACGCTGTTGGACCGTATGAAT 60.066 47.619 0.00 0.00 32.86 2.57
2966 4921 2.166870 ACGCTGTTGGACCGTATGAATA 59.833 45.455 0.00 0.00 32.86 1.75
2967 4922 3.181469 ACGCTGTTGGACCGTATGAATAT 60.181 43.478 0.00 0.00 32.86 1.28
2968 4923 4.038282 ACGCTGTTGGACCGTATGAATATA 59.962 41.667 0.00 0.00 32.86 0.86
2969 4924 4.986034 CGCTGTTGGACCGTATGAATATAA 59.014 41.667 0.00 0.00 0.00 0.98
2970 4925 5.118664 CGCTGTTGGACCGTATGAATATAAG 59.881 44.000 0.00 0.00 0.00 1.73
2971 4926 5.107065 GCTGTTGGACCGTATGAATATAAGC 60.107 44.000 0.00 0.00 0.00 3.09
2972 4927 5.302360 TGTTGGACCGTATGAATATAAGCC 58.698 41.667 0.00 0.00 0.00 4.35
2973 4928 5.071250 TGTTGGACCGTATGAATATAAGCCT 59.929 40.000 0.00 0.00 0.00 4.58
2974 4929 5.401531 TGGACCGTATGAATATAAGCCTC 57.598 43.478 0.00 0.00 0.00 4.70
2975 4930 4.222145 TGGACCGTATGAATATAAGCCTCC 59.778 45.833 0.00 0.00 0.00 4.30
2976 4931 4.466726 GGACCGTATGAATATAAGCCTCCT 59.533 45.833 0.00 0.00 0.00 3.69
2977 4932 5.407407 ACCGTATGAATATAAGCCTCCTG 57.593 43.478 0.00 0.00 0.00 3.86
2978 4933 5.084519 ACCGTATGAATATAAGCCTCCTGA 58.915 41.667 0.00 0.00 0.00 3.86
2979 4934 5.721960 ACCGTATGAATATAAGCCTCCTGAT 59.278 40.000 0.00 0.00 0.00 2.90
2980 4935 6.127310 ACCGTATGAATATAAGCCTCCTGATC 60.127 42.308 0.00 0.00 0.00 2.92
2981 4936 6.097554 CCGTATGAATATAAGCCTCCTGATCT 59.902 42.308 0.00 0.00 0.00 2.75
2982 4937 7.364232 CCGTATGAATATAAGCCTCCTGATCTT 60.364 40.741 0.00 0.00 0.00 2.40
2983 4938 8.687242 CGTATGAATATAAGCCTCCTGATCTTA 58.313 37.037 0.00 0.00 0.00 2.10
2986 4941 7.334090 TGAATATAAGCCTCCTGATCTTATGC 58.666 38.462 0.00 0.00 35.41 3.14
2987 4942 6.881067 ATATAAGCCTCCTGATCTTATGCA 57.119 37.500 0.00 0.00 35.41 3.96
2988 4943 2.926778 AGCCTCCTGATCTTATGCAC 57.073 50.000 0.00 0.00 0.00 4.57
2989 4944 2.121948 AGCCTCCTGATCTTATGCACA 58.878 47.619 0.00 0.00 0.00 4.57
2990 4945 2.507058 AGCCTCCTGATCTTATGCACAA 59.493 45.455 0.00 0.00 0.00 3.33
2991 4946 2.615912 GCCTCCTGATCTTATGCACAAC 59.384 50.000 0.00 0.00 0.00 3.32
2992 4947 3.209410 CCTCCTGATCTTATGCACAACC 58.791 50.000 0.00 0.00 0.00 3.77
2993 4948 3.209410 CTCCTGATCTTATGCACAACCC 58.791 50.000 0.00 0.00 0.00 4.11
2994 4949 2.846206 TCCTGATCTTATGCACAACCCT 59.154 45.455 0.00 0.00 0.00 4.34
2995 4950 3.266772 TCCTGATCTTATGCACAACCCTT 59.733 43.478 0.00 0.00 0.00 3.95
2996 4951 4.473196 TCCTGATCTTATGCACAACCCTTA 59.527 41.667 0.00 0.00 0.00 2.69
2997 4952 5.045213 TCCTGATCTTATGCACAACCCTTAA 60.045 40.000 0.00 0.00 0.00 1.85
2998 4953 5.066505 CCTGATCTTATGCACAACCCTTAAC 59.933 44.000 0.00 0.00 0.00 2.01
2999 4954 4.947388 TGATCTTATGCACAACCCTTAACC 59.053 41.667 0.00 0.00 0.00 2.85
3000 4955 3.340034 TCTTATGCACAACCCTTAACCG 58.660 45.455 0.00 0.00 0.00 4.44
3001 4956 2.863132 TATGCACAACCCTTAACCGT 57.137 45.000 0.00 0.00 0.00 4.83
3002 4957 2.863132 ATGCACAACCCTTAACCGTA 57.137 45.000 0.00 0.00 0.00 4.02
3003 4958 1.881591 TGCACAACCCTTAACCGTAC 58.118 50.000 0.00 0.00 0.00 3.67
3004 4959 1.140452 TGCACAACCCTTAACCGTACA 59.860 47.619 0.00 0.00 0.00 2.90
3005 4960 1.802365 GCACAACCCTTAACCGTACAG 59.198 52.381 0.00 0.00 0.00 2.74
3007 4962 2.037511 CACAACCCTTAACCGTACAGGA 59.962 50.000 10.17 0.00 45.00 3.86
3008 4963 2.037641 ACAACCCTTAACCGTACAGGAC 59.962 50.000 10.17 0.00 45.00 3.85
3009 4964 1.269958 ACCCTTAACCGTACAGGACC 58.730 55.000 10.17 0.00 45.00 4.46
3010 4965 0.174162 CCCTTAACCGTACAGGACCG 59.826 60.000 10.17 0.00 45.00 4.79
3011 4966 0.459063 CCTTAACCGTACAGGACCGC 60.459 60.000 10.17 0.00 45.00 5.68
3012 4967 0.459063 CTTAACCGTACAGGACCGCC 60.459 60.000 10.17 0.00 45.00 6.13
3014 4969 0.899717 TAACCGTACAGGACCGCCTT 60.900 55.000 10.17 0.00 43.90 4.35
3015 4970 1.761500 AACCGTACAGGACCGCCTTT 61.761 55.000 10.17 0.00 43.90 3.11
3016 4971 1.740296 CCGTACAGGACCGCCTTTG 60.740 63.158 0.00 0.00 43.90 2.77
3017 4972 1.005394 CGTACAGGACCGCCTTTGT 60.005 57.895 0.00 0.00 43.90 2.83
3018 4973 0.601841 CGTACAGGACCGCCTTTGTT 60.602 55.000 0.00 0.00 43.90 2.83
3019 4974 0.872388 GTACAGGACCGCCTTTGTTG 59.128 55.000 0.00 0.00 43.90 3.33
3020 4975 0.470766 TACAGGACCGCCTTTGTTGT 59.529 50.000 0.00 0.00 43.90 3.32
3021 4976 0.395173 ACAGGACCGCCTTTGTTGTT 60.395 50.000 0.00 0.00 43.90 2.83
3022 4977 0.310854 CAGGACCGCCTTTGTTGTTC 59.689 55.000 0.00 0.00 43.90 3.18
3023 4978 0.822121 AGGACCGCCTTTGTTGTTCC 60.822 55.000 0.00 0.00 43.90 3.62
3024 4979 1.281656 GACCGCCTTTGTTGTTCCG 59.718 57.895 0.00 0.00 0.00 4.30
3025 4980 2.125202 GACCGCCTTTGTTGTTCCGG 62.125 60.000 0.00 0.00 41.31 5.14
3026 4981 2.642700 CGCCTTTGTTGTTCCGGG 59.357 61.111 0.00 0.00 0.00 5.73
3027 4982 2.338620 GCCTTTGTTGTTCCGGGC 59.661 61.111 0.00 0.00 0.00 6.13
3028 4983 3.047735 CCTTTGTTGTTCCGGGCC 58.952 61.111 0.00 0.00 0.00 5.80
3029 4984 1.530655 CCTTTGTTGTTCCGGGCCT 60.531 57.895 0.84 0.00 0.00 5.19
3030 4985 1.524008 CCTTTGTTGTTCCGGGCCTC 61.524 60.000 0.84 0.00 0.00 4.70
3031 4986 1.852067 CTTTGTTGTTCCGGGCCTCG 61.852 60.000 0.84 4.41 38.88 4.63
3032 4987 2.612095 TTTGTTGTTCCGGGCCTCGT 62.612 55.000 0.84 0.00 37.11 4.18
3033 4988 2.281276 GTTGTTCCGGGCCTCGTT 60.281 61.111 0.84 0.00 37.11 3.85
3034 4989 2.281208 TTGTTCCGGGCCTCGTTG 60.281 61.111 0.84 0.00 37.11 4.10
3052 5007 3.708734 CGTGCGTCCCGTGGAAAC 61.709 66.667 0.00 0.00 31.38 2.78
3053 5008 2.280592 GTGCGTCCCGTGGAAACT 60.281 61.111 0.00 0.00 31.38 2.66
3054 5009 2.280524 TGCGTCCCGTGGAAACTG 60.281 61.111 0.00 0.00 31.38 3.16
3055 5010 2.280592 GCGTCCCGTGGAAACTGT 60.281 61.111 0.00 0.00 31.38 3.55
3056 5011 2.315386 GCGTCCCGTGGAAACTGTC 61.315 63.158 0.00 0.00 31.38 3.51
3057 5012 1.068417 CGTCCCGTGGAAACTGTCA 59.932 57.895 0.00 0.00 31.38 3.58
3058 5013 0.320421 CGTCCCGTGGAAACTGTCAT 60.320 55.000 0.00 0.00 31.38 3.06
3059 5014 1.156736 GTCCCGTGGAAACTGTCATG 58.843 55.000 0.00 0.00 31.38 3.07
3060 5015 0.762418 TCCCGTGGAAACTGTCATGT 59.238 50.000 0.00 0.00 0.00 3.21
3061 5016 1.972075 TCCCGTGGAAACTGTCATGTA 59.028 47.619 0.00 0.00 0.00 2.29
3062 5017 2.369203 TCCCGTGGAAACTGTCATGTAA 59.631 45.455 0.00 0.00 0.00 2.41
3063 5018 2.482721 CCCGTGGAAACTGTCATGTAAC 59.517 50.000 0.00 0.00 0.00 2.50
3064 5019 3.135225 CCGTGGAAACTGTCATGTAACA 58.865 45.455 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 7.999679 TCTGACAAAAGAGTGAAAACATCATT 58.000 30.769 0.00 0.00 40.97 2.57
135 136 4.192429 AGGTGCAATAAAAGGTCAATGC 57.808 40.909 0.00 0.00 0.00 3.56
147 148 6.152492 TGCTGATTACAATCAAAGGTGCAATA 59.848 34.615 11.28 0.00 44.20 1.90
148 149 5.047164 TGCTGATTACAATCAAAGGTGCAAT 60.047 36.000 11.28 0.00 44.20 3.56
151 152 4.439305 TGCTGATTACAATCAAAGGTGC 57.561 40.909 6.15 6.23 44.20 5.01
175 176 2.991250 AGCATAGCGAGACAACCATTT 58.009 42.857 0.00 0.00 0.00 2.32
280 282 2.485122 GGCGCTTTTCCATCACCG 59.515 61.111 7.64 0.00 0.00 4.94
282 284 1.134694 GTCGGCGCTTTTCCATCAC 59.865 57.895 7.64 0.00 0.00 3.06
326 328 9.665264 CAACCAGTGAAGTAAATTTTCTCTTAC 57.335 33.333 0.00 0.00 0.00 2.34
352 355 6.284459 AGAAAACGTGAGATGGATTCCTATC 58.716 40.000 3.95 5.76 0.00 2.08
377 380 2.097466 ACTTTGAGAAAGGCACAACACG 59.903 45.455 0.00 0.00 42.82 4.49
477 483 1.407618 ACACGCTAACACTGACACTGA 59.592 47.619 0.00 0.00 0.00 3.41
508 907 4.261801 CCAACGGTTACTCCAATCATCTT 58.738 43.478 0.00 0.00 35.57 2.40
567 966 7.015292 TCCAATACCTTTGCCTACTAGTCTATG 59.985 40.741 0.00 0.00 0.00 2.23
586 985 4.755266 TCTGAAAGTAGCCCTCCAATAC 57.245 45.455 0.00 0.00 33.76 1.89
699 2378 1.008875 TTCTTAGCTCGCACTGCACG 61.009 55.000 1.11 0.00 0.00 5.34
722 2401 4.645588 TGCATAATGCTGAATGATGAACCA 59.354 37.500 0.00 0.00 45.31 3.67
727 2406 5.134202 ACCATGCATAATGCTGAATGATG 57.866 39.130 0.00 0.00 45.31 3.07
906 2618 1.327303 GCACCCACACATTCCAAAGA 58.673 50.000 0.00 0.00 0.00 2.52
968 2683 2.835764 TGCGGGTATAGTCAGAAAACCT 59.164 45.455 0.00 0.00 0.00 3.50
969 2684 3.255969 TGCGGGTATAGTCAGAAAACC 57.744 47.619 0.00 0.00 0.00 3.27
1011 2726 1.047801 TCAGCAGAGGTGTGTAGCAA 58.952 50.000 0.00 0.00 32.43 3.91
1020 2735 2.156098 TTGGGGCTTCAGCAGAGGT 61.156 57.895 0.30 0.00 44.36 3.85
1147 2862 5.625921 TCCACACATCAACACATGTTATG 57.374 39.130 0.00 0.00 34.60 1.90
1248 2963 0.680280 GGGACGGAGCACTGACTCTA 60.680 60.000 0.00 0.00 36.87 2.43
1264 2979 1.838077 GTTAGGGCTTTAGCAGAGGGA 59.162 52.381 3.88 0.00 44.36 4.20
1292 3007 3.706373 GAAGGGCTGGCCGAGACA 61.706 66.667 15.17 0.00 36.85 3.41
1646 3372 4.456911 CAGAATACAGATGCAAACACCAGT 59.543 41.667 0.00 0.00 0.00 4.00
1876 3607 9.588096 ACACCAAAAAGATTTAGGAGAATACTT 57.412 29.630 4.32 0.00 0.00 2.24
2295 4073 2.153645 TGACCTGTGCATTGTGTCATC 58.846 47.619 7.08 0.00 31.45 2.92
2392 4170 0.606096 CACATCGACACCAGGTACCA 59.394 55.000 15.94 0.00 0.00 3.25
2673 4628 7.011763 CCTTTGGTATAACACATCAGATCACAG 59.988 40.741 0.00 0.00 0.00 3.66
2674 4629 6.823182 CCTTTGGTATAACACATCAGATCACA 59.177 38.462 0.00 0.00 0.00 3.58
2675 4630 6.823689 ACCTTTGGTATAACACATCAGATCAC 59.176 38.462 0.00 0.00 32.11 3.06
2676 4631 6.957631 ACCTTTGGTATAACACATCAGATCA 58.042 36.000 0.00 0.00 32.11 2.92
2677 4632 7.865706 AACCTTTGGTATAACACATCAGATC 57.134 36.000 0.00 0.00 33.12 2.75
2678 4633 7.669722 ACAAACCTTTGGTATAACACATCAGAT 59.330 33.333 0.00 0.00 42.34 2.90
2679 4634 7.001674 ACAAACCTTTGGTATAACACATCAGA 58.998 34.615 0.00 0.00 42.34 3.27
2680 4635 7.214467 ACAAACCTTTGGTATAACACATCAG 57.786 36.000 0.00 0.00 42.34 2.90
2681 4636 8.735315 CATACAAACCTTTGGTATAACACATCA 58.265 33.333 0.00 0.00 42.34 3.07
2682 4637 8.736244 ACATACAAACCTTTGGTATAACACATC 58.264 33.333 0.00 0.00 42.34 3.06
2683 4638 8.644374 ACATACAAACCTTTGGTATAACACAT 57.356 30.769 0.00 0.00 42.34 3.21
2684 4639 8.353684 CAACATACAAACCTTTGGTATAACACA 58.646 33.333 0.00 0.00 42.34 3.72
2685 4640 8.354426 ACAACATACAAACCTTTGGTATAACAC 58.646 33.333 0.00 0.00 42.34 3.32
2686 4641 8.353684 CACAACATACAAACCTTTGGTATAACA 58.646 33.333 2.94 0.00 42.34 2.41
2687 4642 8.354426 ACACAACATACAAACCTTTGGTATAAC 58.646 33.333 2.94 0.00 42.34 1.89
2688 4643 8.353684 CACACAACATACAAACCTTTGGTATAA 58.646 33.333 2.94 0.00 42.34 0.98
2689 4644 7.502895 ACACACAACATACAAACCTTTGGTATA 59.497 33.333 2.94 0.00 42.34 1.47
2690 4645 6.322712 ACACACAACATACAAACCTTTGGTAT 59.677 34.615 2.94 0.00 42.34 2.73
2691 4646 5.652891 ACACACAACATACAAACCTTTGGTA 59.347 36.000 2.94 0.00 42.34 3.25
2692 4647 4.464597 ACACACAACATACAAACCTTTGGT 59.535 37.500 2.94 0.00 42.34 3.67
2693 4648 4.803088 CACACACAACATACAAACCTTTGG 59.197 41.667 2.94 0.00 42.34 3.28
2694 4649 5.645624 TCACACACAACATACAAACCTTTG 58.354 37.500 0.00 0.00 43.62 2.77
2695 4650 5.163561 CCTCACACACAACATACAAACCTTT 60.164 40.000 0.00 0.00 0.00 3.11
2696 4651 4.338118 CCTCACACACAACATACAAACCTT 59.662 41.667 0.00 0.00 0.00 3.50
2697 4652 3.882888 CCTCACACACAACATACAAACCT 59.117 43.478 0.00 0.00 0.00 3.50
2698 4653 3.004315 CCCTCACACACAACATACAAACC 59.996 47.826 0.00 0.00 0.00 3.27
2699 4654 3.880490 TCCCTCACACACAACATACAAAC 59.120 43.478 0.00 0.00 0.00 2.93
2700 4655 4.157849 TCCCTCACACACAACATACAAA 57.842 40.909 0.00 0.00 0.00 2.83
2701 4656 3.847671 TCCCTCACACACAACATACAA 57.152 42.857 0.00 0.00 0.00 2.41
2702 4657 4.365514 AATCCCTCACACACAACATACA 57.634 40.909 0.00 0.00 0.00 2.29
2703 4658 4.156008 GGAAATCCCTCACACACAACATAC 59.844 45.833 0.00 0.00 0.00 2.39
2704 4659 4.042809 AGGAAATCCCTCACACACAACATA 59.957 41.667 0.00 0.00 43.31 2.29
2705 4660 3.157087 GGAAATCCCTCACACACAACAT 58.843 45.455 0.00 0.00 0.00 2.71
2706 4661 2.174639 AGGAAATCCCTCACACACAACA 59.825 45.455 0.00 0.00 43.31 3.33
2707 4662 2.863809 AGGAAATCCCTCACACACAAC 58.136 47.619 0.00 0.00 43.31 3.32
2719 4674 0.323451 AACGGCAGGGAAGGAAATCC 60.323 55.000 0.00 0.00 38.86 3.01
2720 4675 0.811281 CAACGGCAGGGAAGGAAATC 59.189 55.000 0.00 0.00 0.00 2.17
2721 4676 0.112412 ACAACGGCAGGGAAGGAAAT 59.888 50.000 0.00 0.00 0.00 2.17
2722 4677 0.106419 AACAACGGCAGGGAAGGAAA 60.106 50.000 0.00 0.00 0.00 3.13
2723 4678 0.821711 CAACAACGGCAGGGAAGGAA 60.822 55.000 0.00 0.00 0.00 3.36
2724 4679 1.228124 CAACAACGGCAGGGAAGGA 60.228 57.895 0.00 0.00 0.00 3.36
2725 4680 2.919494 GCAACAACGGCAGGGAAGG 61.919 63.158 0.00 0.00 0.00 3.46
2726 4681 2.644992 GCAACAACGGCAGGGAAG 59.355 61.111 0.00 0.00 0.00 3.46
2727 4682 2.909965 GGCAACAACGGCAGGGAA 60.910 61.111 0.00 0.00 0.00 3.97
2743 4698 0.182537 TATCCCTGGTGCCGAAATGG 59.817 55.000 0.00 0.00 42.50 3.16
2744 4699 2.051334 TTATCCCTGGTGCCGAAATG 57.949 50.000 0.00 0.00 0.00 2.32
2745 4700 2.586425 CATTATCCCTGGTGCCGAAAT 58.414 47.619 0.00 0.00 0.00 2.17
2746 4701 1.409521 CCATTATCCCTGGTGCCGAAA 60.410 52.381 0.00 0.00 0.00 3.46
2747 4702 0.182537 CCATTATCCCTGGTGCCGAA 59.817 55.000 0.00 0.00 0.00 4.30
2748 4703 1.705002 CCCATTATCCCTGGTGCCGA 61.705 60.000 0.00 0.00 31.44 5.54
2749 4704 1.228245 CCCATTATCCCTGGTGCCG 60.228 63.158 0.00 0.00 31.44 5.69
2750 4705 1.153756 CCCCATTATCCCTGGTGCC 59.846 63.158 0.00 0.00 31.44 5.01
2751 4706 0.178990 GTCCCCATTATCCCTGGTGC 60.179 60.000 0.00 0.00 31.44 5.01
2752 4707 1.522900 AGTCCCCATTATCCCTGGTG 58.477 55.000 0.00 0.00 31.44 4.17
2753 4708 2.303660 AAGTCCCCATTATCCCTGGT 57.696 50.000 0.00 0.00 31.44 4.00
2754 4709 3.566351 GAAAAGTCCCCATTATCCCTGG 58.434 50.000 0.00 0.00 0.00 4.45
2755 4710 3.566351 GGAAAAGTCCCCATTATCCCTG 58.434 50.000 0.00 0.00 38.08 4.45
2756 4711 3.973472 GGAAAAGTCCCCATTATCCCT 57.027 47.619 0.00 0.00 38.08 4.20
2767 4722 1.602605 CACCACGGGGGAAAAGTCC 60.603 63.158 9.50 0.00 44.10 3.85
2768 4723 0.605589 CTCACCACGGGGGAAAAGTC 60.606 60.000 9.50 0.00 33.19 3.01
2769 4724 1.057851 TCTCACCACGGGGGAAAAGT 61.058 55.000 9.50 0.00 33.19 2.66
2770 4725 0.321653 CTCTCACCACGGGGGAAAAG 60.322 60.000 9.50 0.00 33.19 2.27
2771 4726 1.758592 CTCTCACCACGGGGGAAAA 59.241 57.895 9.50 0.00 33.19 2.29
2772 4727 2.221299 CCTCTCACCACGGGGGAAA 61.221 63.158 9.50 0.00 33.19 3.13
2773 4728 2.606519 CCTCTCACCACGGGGGAA 60.607 66.667 9.50 0.00 33.19 3.97
2774 4729 4.715130 CCCTCTCACCACGGGGGA 62.715 72.222 9.50 0.83 41.15 4.81
2775 4730 4.715130 TCCCTCTCACCACGGGGG 62.715 72.222 9.50 0.00 44.81 5.40
2776 4731 2.365635 ATCCCTCTCACCACGGGG 60.366 66.667 0.00 0.00 38.55 5.73
2777 4732 1.381872 AGATCCCTCTCACCACGGG 60.382 63.158 0.00 0.00 39.41 5.28
2778 4733 2.119886 GAGATCCCTCTCACCACGG 58.880 63.158 0.00 0.00 46.13 4.94
2785 4740 4.017037 TCCTGGGTATATGAGATCCCTCTC 60.017 50.000 0.00 0.00 46.89 3.20
2786 4741 3.932562 TCCTGGGTATATGAGATCCCTCT 59.067 47.826 0.00 0.00 40.10 3.69
2787 4742 4.338795 TCCTGGGTATATGAGATCCCTC 57.661 50.000 0.00 0.00 40.48 4.30
2788 4743 4.785173 TTCCTGGGTATATGAGATCCCT 57.215 45.455 0.00 0.00 40.48 4.20
2789 4744 5.843019 TTTTCCTGGGTATATGAGATCCC 57.157 43.478 0.00 0.00 40.26 3.85
2790 4745 7.339482 GGTATTTTCCTGGGTATATGAGATCC 58.661 42.308 0.00 0.00 0.00 3.36
2791 4746 7.339482 GGGTATTTTCCTGGGTATATGAGATC 58.661 42.308 0.00 0.00 0.00 2.75
2792 4747 6.217693 GGGGTATTTTCCTGGGTATATGAGAT 59.782 42.308 0.00 0.00 0.00 2.75
2793 4748 5.550403 GGGGTATTTTCCTGGGTATATGAGA 59.450 44.000 0.00 0.00 0.00 3.27
2794 4749 5.281037 GGGGGTATTTTCCTGGGTATATGAG 60.281 48.000 0.00 0.00 0.00 2.90
2795 4750 4.604490 GGGGGTATTTTCCTGGGTATATGA 59.396 45.833 0.00 0.00 0.00 2.15
2796 4751 4.930696 GGGGGTATTTTCCTGGGTATATG 58.069 47.826 0.00 0.00 0.00 1.78
2819 4774 2.198426 ACCACACCAAGCCCCTTG 59.802 61.111 0.00 0.00 40.75 3.61
2820 4775 2.198426 CACCACACCAAGCCCCTT 59.802 61.111 0.00 0.00 0.00 3.95
2821 4776 4.603535 GCACCACACCAAGCCCCT 62.604 66.667 0.00 0.00 0.00 4.79
2834 4789 4.259367 GGGAAAATATAACCCTGGGCACC 61.259 52.174 14.08 3.22 41.12 5.01
2835 4790 2.963101 GGGAAAATATAACCCTGGGCAC 59.037 50.000 14.08 0.00 40.39 5.01
2836 4791 3.322191 GGGAAAATATAACCCTGGGCA 57.678 47.619 14.08 0.40 40.39 5.36
2842 4797 8.073467 TGTGATTTGAAGGGAAAATATAACCC 57.927 34.615 0.00 0.00 43.55 4.11
2843 4798 8.197439 CCTGTGATTTGAAGGGAAAATATAACC 58.803 37.037 0.00 0.00 0.00 2.85
2844 4799 8.749354 ACCTGTGATTTGAAGGGAAAATATAAC 58.251 33.333 0.00 0.00 35.24 1.89
2845 4800 8.893563 ACCTGTGATTTGAAGGGAAAATATAA 57.106 30.769 0.00 0.00 35.24 0.98
2846 4801 9.983024 TTACCTGTGATTTGAAGGGAAAATATA 57.017 29.630 0.00 0.00 30.66 0.86
2847 4802 8.893563 TTACCTGTGATTTGAAGGGAAAATAT 57.106 30.769 0.00 0.00 30.66 1.28
2848 4803 8.167392 TCTTACCTGTGATTTGAAGGGAAAATA 58.833 33.333 0.00 0.00 33.43 1.40
2849 4804 7.010160 TCTTACCTGTGATTTGAAGGGAAAAT 58.990 34.615 0.00 0.00 33.43 1.82
2850 4805 6.369629 TCTTACCTGTGATTTGAAGGGAAAA 58.630 36.000 0.00 0.00 33.43 2.29
2851 4806 5.947663 TCTTACCTGTGATTTGAAGGGAAA 58.052 37.500 0.00 0.00 33.43 3.13
2852 4807 5.576563 TCTTACCTGTGATTTGAAGGGAA 57.423 39.130 0.00 0.00 35.24 3.97
2853 4808 5.250543 TCATCTTACCTGTGATTTGAAGGGA 59.749 40.000 0.00 0.00 35.24 4.20
2854 4809 5.500234 TCATCTTACCTGTGATTTGAAGGG 58.500 41.667 0.00 0.00 35.24 3.95
2855 4810 7.452880 TTTCATCTTACCTGTGATTTGAAGG 57.547 36.000 0.00 0.00 37.11 3.46
2856 4811 8.786898 TCTTTTCATCTTACCTGTGATTTGAAG 58.213 33.333 0.00 0.00 0.00 3.02
2857 4812 8.690203 TCTTTTCATCTTACCTGTGATTTGAA 57.310 30.769 0.00 0.00 0.00 2.69
2858 4813 8.156820 TCTCTTTTCATCTTACCTGTGATTTGA 58.843 33.333 0.00 0.00 0.00 2.69
2859 4814 8.327941 TCTCTTTTCATCTTACCTGTGATTTG 57.672 34.615 0.00 0.00 0.00 2.32
2860 4815 8.924511 TTCTCTTTTCATCTTACCTGTGATTT 57.075 30.769 0.00 0.00 0.00 2.17
2861 4816 8.924511 TTTCTCTTTTCATCTTACCTGTGATT 57.075 30.769 0.00 0.00 0.00 2.57
2862 4817 9.171877 GATTTCTCTTTTCATCTTACCTGTGAT 57.828 33.333 0.00 0.00 0.00 3.06
2863 4818 8.156820 TGATTTCTCTTTTCATCTTACCTGTGA 58.843 33.333 0.00 0.00 0.00 3.58
2864 4819 8.327941 TGATTTCTCTTTTCATCTTACCTGTG 57.672 34.615 0.00 0.00 0.00 3.66
2865 4820 8.924511 TTGATTTCTCTTTTCATCTTACCTGT 57.075 30.769 0.00 0.00 0.00 4.00
2866 4821 7.967303 GCTTGATTTCTCTTTTCATCTTACCTG 59.033 37.037 0.00 0.00 0.00 4.00
2867 4822 7.667219 TGCTTGATTTCTCTTTTCATCTTACCT 59.333 33.333 0.00 0.00 0.00 3.08
2868 4823 7.820648 TGCTTGATTTCTCTTTTCATCTTACC 58.179 34.615 0.00 0.00 0.00 2.85
2869 4824 8.510505 ACTGCTTGATTTCTCTTTTCATCTTAC 58.489 33.333 0.00 0.00 0.00 2.34
2870 4825 8.627208 ACTGCTTGATTTCTCTTTTCATCTTA 57.373 30.769 0.00 0.00 0.00 2.10
2871 4826 7.521871 ACTGCTTGATTTCTCTTTTCATCTT 57.478 32.000 0.00 0.00 0.00 2.40
2872 4827 7.368833 CAACTGCTTGATTTCTCTTTTCATCT 58.631 34.615 0.00 0.00 0.00 2.90
2873 4828 6.585322 CCAACTGCTTGATTTCTCTTTTCATC 59.415 38.462 0.00 0.00 0.00 2.92
2874 4829 6.266103 TCCAACTGCTTGATTTCTCTTTTCAT 59.734 34.615 0.00 0.00 0.00 2.57
2875 4830 5.593909 TCCAACTGCTTGATTTCTCTTTTCA 59.406 36.000 0.00 0.00 0.00 2.69
2876 4831 6.076981 TCCAACTGCTTGATTTCTCTTTTC 57.923 37.500 0.00 0.00 0.00 2.29
2877 4832 6.469782 TTCCAACTGCTTGATTTCTCTTTT 57.530 33.333 0.00 0.00 0.00 2.27
2878 4833 6.569226 CGATTCCAACTGCTTGATTTCTCTTT 60.569 38.462 0.00 0.00 0.00 2.52
2879 4834 5.106396 CGATTCCAACTGCTTGATTTCTCTT 60.106 40.000 0.00 0.00 0.00 2.85
2880 4835 4.394300 CGATTCCAACTGCTTGATTTCTCT 59.606 41.667 0.00 0.00 0.00 3.10
2881 4836 4.656041 CGATTCCAACTGCTTGATTTCTC 58.344 43.478 0.00 0.00 0.00 2.87
2882 4837 3.119708 GCGATTCCAACTGCTTGATTTCT 60.120 43.478 0.00 0.00 0.00 2.52
2883 4838 3.174375 GCGATTCCAACTGCTTGATTTC 58.826 45.455 0.00 0.00 0.00 2.17
2884 4839 2.557924 TGCGATTCCAACTGCTTGATTT 59.442 40.909 0.00 0.00 0.00 2.17
2885 4840 2.161855 TGCGATTCCAACTGCTTGATT 58.838 42.857 0.00 0.00 0.00 2.57
2886 4841 1.825090 TGCGATTCCAACTGCTTGAT 58.175 45.000 0.00 0.00 0.00 2.57
2887 4842 1.266718 GTTGCGATTCCAACTGCTTGA 59.733 47.619 9.45 0.00 41.36 3.02
2888 4843 1.666888 GGTTGCGATTCCAACTGCTTG 60.667 52.381 13.91 0.00 43.48 4.01
2889 4844 0.598065 GGTTGCGATTCCAACTGCTT 59.402 50.000 13.91 0.00 43.48 3.91
2890 4845 0.537143 TGGTTGCGATTCCAACTGCT 60.537 50.000 13.91 0.00 43.48 4.24
2891 4846 0.313672 TTGGTTGCGATTCCAACTGC 59.686 50.000 13.91 0.00 43.48 4.40
2892 4847 2.223688 TGTTTGGTTGCGATTCCAACTG 60.224 45.455 13.91 0.00 43.48 3.16
2893 4848 2.028130 TGTTTGGTTGCGATTCCAACT 58.972 42.857 13.91 0.00 43.48 3.16
2894 4849 2.500509 TGTTTGGTTGCGATTCCAAC 57.499 45.000 5.39 8.61 42.40 3.77
2895 4850 3.452474 CTTTGTTTGGTTGCGATTCCAA 58.548 40.909 0.00 0.00 41.22 3.53
2896 4851 2.801342 GCTTTGTTTGGTTGCGATTCCA 60.801 45.455 0.00 0.00 0.00 3.53
2897 4852 1.792367 GCTTTGTTTGGTTGCGATTCC 59.208 47.619 0.00 0.00 0.00 3.01
2898 4853 1.792367 GGCTTTGTTTGGTTGCGATTC 59.208 47.619 0.00 0.00 0.00 2.52
2899 4854 1.540146 GGGCTTTGTTTGGTTGCGATT 60.540 47.619 0.00 0.00 0.00 3.34
2900 4855 0.033366 GGGCTTTGTTTGGTTGCGAT 59.967 50.000 0.00 0.00 0.00 4.58
2901 4856 1.040339 AGGGCTTTGTTTGGTTGCGA 61.040 50.000 0.00 0.00 0.00 5.10
2902 4857 0.671251 TAGGGCTTTGTTTGGTTGCG 59.329 50.000 0.00 0.00 0.00 4.85
2903 4858 1.960689 TCTAGGGCTTTGTTTGGTTGC 59.039 47.619 0.00 0.00 0.00 4.17
2904 4859 2.558359 CCTCTAGGGCTTTGTTTGGTTG 59.442 50.000 0.00 0.00 0.00 3.77
2905 4860 2.177016 ACCTCTAGGGCTTTGTTTGGTT 59.823 45.455 0.20 0.00 40.27 3.67
2906 4861 1.780919 ACCTCTAGGGCTTTGTTTGGT 59.219 47.619 0.20 0.00 40.27 3.67
2907 4862 2.586648 ACCTCTAGGGCTTTGTTTGG 57.413 50.000 0.20 0.00 40.27 3.28
2908 4863 4.254492 GTCTACCTCTAGGGCTTTGTTTG 58.746 47.826 0.20 0.00 40.27 2.93
2909 4864 3.908103 TGTCTACCTCTAGGGCTTTGTTT 59.092 43.478 0.20 0.00 40.27 2.83
2910 4865 3.261137 GTGTCTACCTCTAGGGCTTTGTT 59.739 47.826 0.20 0.00 40.27 2.83
2911 4866 2.832733 GTGTCTACCTCTAGGGCTTTGT 59.167 50.000 0.20 0.00 40.27 2.83
2912 4867 2.168728 GGTGTCTACCTCTAGGGCTTTG 59.831 54.545 0.20 0.00 43.97 2.77
2913 4868 2.468915 GGTGTCTACCTCTAGGGCTTT 58.531 52.381 0.20 0.00 43.97 3.51
2914 4869 1.685491 CGGTGTCTACCTCTAGGGCTT 60.685 57.143 0.20 0.00 45.22 4.35
2915 4870 0.106619 CGGTGTCTACCTCTAGGGCT 60.107 60.000 0.20 0.00 45.22 5.19
2916 4871 1.108132 CCGGTGTCTACCTCTAGGGC 61.108 65.000 0.20 0.00 45.22 5.19
2917 4872 0.467659 CCCGGTGTCTACCTCTAGGG 60.468 65.000 0.00 0.00 45.22 3.53
2918 4873 0.549950 TCCCGGTGTCTACCTCTAGG 59.450 60.000 0.00 0.00 45.22 3.02
2919 4874 2.431954 TTCCCGGTGTCTACCTCTAG 57.568 55.000 0.00 0.00 45.22 2.43
2920 4875 2.905415 TTTCCCGGTGTCTACCTCTA 57.095 50.000 0.00 0.00 45.22 2.43
2921 4876 2.019807 TTTTCCCGGTGTCTACCTCT 57.980 50.000 0.00 0.00 45.22 3.69
2922 4877 4.161001 TCTTATTTTCCCGGTGTCTACCTC 59.839 45.833 0.00 0.00 45.22 3.85
2923 4878 4.081254 GTCTTATTTTCCCGGTGTCTACCT 60.081 45.833 0.00 0.00 45.22 3.08
2924 4879 4.186926 GTCTTATTTTCCCGGTGTCTACC 58.813 47.826 0.00 0.00 43.89 3.18
2925 4880 3.861689 CGTCTTATTTTCCCGGTGTCTAC 59.138 47.826 0.00 0.00 0.00 2.59
2926 4881 3.676873 GCGTCTTATTTTCCCGGTGTCTA 60.677 47.826 0.00 0.00 0.00 2.59
2927 4882 2.933928 GCGTCTTATTTTCCCGGTGTCT 60.934 50.000 0.00 0.00 0.00 3.41
2928 4883 1.395954 GCGTCTTATTTTCCCGGTGTC 59.604 52.381 0.00 0.00 0.00 3.67
2929 4884 1.002773 AGCGTCTTATTTTCCCGGTGT 59.997 47.619 0.00 0.00 0.00 4.16
2930 4885 1.396996 CAGCGTCTTATTTTCCCGGTG 59.603 52.381 0.00 0.00 40.04 4.94
2931 4886 1.002773 ACAGCGTCTTATTTTCCCGGT 59.997 47.619 0.00 0.00 0.00 5.28
2932 4887 1.734163 ACAGCGTCTTATTTTCCCGG 58.266 50.000 0.00 0.00 0.00 5.73
2933 4888 2.159572 CCAACAGCGTCTTATTTTCCCG 60.160 50.000 0.00 0.00 0.00 5.14
2934 4889 3.078837 TCCAACAGCGTCTTATTTTCCC 58.921 45.455 0.00 0.00 0.00 3.97
2935 4890 3.119955 GGTCCAACAGCGTCTTATTTTCC 60.120 47.826 0.00 0.00 0.00 3.13
2936 4891 3.424433 CGGTCCAACAGCGTCTTATTTTC 60.424 47.826 0.00 0.00 41.29 2.29
2937 4892 2.482721 CGGTCCAACAGCGTCTTATTTT 59.517 45.455 0.00 0.00 41.29 1.82
2938 4893 2.073816 CGGTCCAACAGCGTCTTATTT 58.926 47.619 0.00 0.00 41.29 1.40
2939 4894 1.722011 CGGTCCAACAGCGTCTTATT 58.278 50.000 0.00 0.00 41.29 1.40
2940 4895 3.436001 CGGTCCAACAGCGTCTTAT 57.564 52.632 0.00 0.00 41.29 1.73
2941 4896 4.979204 CGGTCCAACAGCGTCTTA 57.021 55.556 0.00 0.00 41.29 2.10
2947 4902 5.107065 GCTTATATTCATACGGTCCAACAGC 60.107 44.000 0.00 0.00 0.00 4.40
2948 4903 5.408604 GGCTTATATTCATACGGTCCAACAG 59.591 44.000 0.00 0.00 0.00 3.16
2949 4904 5.071250 AGGCTTATATTCATACGGTCCAACA 59.929 40.000 0.00 0.00 0.00 3.33
2950 4905 5.548406 AGGCTTATATTCATACGGTCCAAC 58.452 41.667 0.00 0.00 0.00 3.77
2951 4906 5.279809 GGAGGCTTATATTCATACGGTCCAA 60.280 44.000 0.00 0.00 0.00 3.53
2952 4907 4.222145 GGAGGCTTATATTCATACGGTCCA 59.778 45.833 0.00 0.00 0.00 4.02
2953 4908 4.466726 AGGAGGCTTATATTCATACGGTCC 59.533 45.833 0.00 0.00 0.00 4.46
2954 4909 5.185249 TCAGGAGGCTTATATTCATACGGTC 59.815 44.000 0.00 0.00 0.00 4.79
2955 4910 5.084519 TCAGGAGGCTTATATTCATACGGT 58.915 41.667 0.00 0.00 0.00 4.83
2956 4911 5.661056 TCAGGAGGCTTATATTCATACGG 57.339 43.478 0.00 0.00 0.00 4.02
2957 4912 7.106439 AGATCAGGAGGCTTATATTCATACG 57.894 40.000 0.00 0.00 0.00 3.06
2960 4915 7.992033 GCATAAGATCAGGAGGCTTATATTCAT 59.008 37.037 0.00 0.00 34.15 2.57
2961 4916 7.038088 TGCATAAGATCAGGAGGCTTATATTCA 60.038 37.037 0.00 0.00 34.15 2.57
2962 4917 7.279758 GTGCATAAGATCAGGAGGCTTATATTC 59.720 40.741 0.00 0.00 34.15 1.75
2963 4918 7.108847 GTGCATAAGATCAGGAGGCTTATATT 58.891 38.462 0.00 0.00 34.15 1.28
2964 4919 6.214208 TGTGCATAAGATCAGGAGGCTTATAT 59.786 38.462 0.00 0.00 34.15 0.86
2965 4920 5.543790 TGTGCATAAGATCAGGAGGCTTATA 59.456 40.000 0.00 0.00 34.15 0.98
2966 4921 4.349048 TGTGCATAAGATCAGGAGGCTTAT 59.651 41.667 0.00 0.00 35.75 1.73
2967 4922 3.711190 TGTGCATAAGATCAGGAGGCTTA 59.289 43.478 0.00 0.00 0.00 3.09
2968 4923 2.507058 TGTGCATAAGATCAGGAGGCTT 59.493 45.455 0.00 0.00 0.00 4.35
2969 4924 2.121948 TGTGCATAAGATCAGGAGGCT 58.878 47.619 0.00 0.00 0.00 4.58
2970 4925 2.615912 GTTGTGCATAAGATCAGGAGGC 59.384 50.000 0.00 0.00 0.00 4.70
2971 4926 3.209410 GGTTGTGCATAAGATCAGGAGG 58.791 50.000 0.00 0.00 0.00 4.30
2972 4927 3.118112 AGGGTTGTGCATAAGATCAGGAG 60.118 47.826 0.00 0.00 0.00 3.69
2973 4928 2.846206 AGGGTTGTGCATAAGATCAGGA 59.154 45.455 0.00 0.00 0.00 3.86
2974 4929 3.287867 AGGGTTGTGCATAAGATCAGG 57.712 47.619 0.00 0.00 0.00 3.86
2975 4930 5.066505 GGTTAAGGGTTGTGCATAAGATCAG 59.933 44.000 0.00 0.00 0.00 2.90
2976 4931 4.947388 GGTTAAGGGTTGTGCATAAGATCA 59.053 41.667 0.00 0.00 0.00 2.92
2977 4932 4.035208 CGGTTAAGGGTTGTGCATAAGATC 59.965 45.833 0.00 0.00 0.00 2.75
2978 4933 3.945285 CGGTTAAGGGTTGTGCATAAGAT 59.055 43.478 0.00 0.00 0.00 2.40
2979 4934 3.244630 ACGGTTAAGGGTTGTGCATAAGA 60.245 43.478 0.00 0.00 0.00 2.10
2980 4935 3.078837 ACGGTTAAGGGTTGTGCATAAG 58.921 45.455 0.00 0.00 0.00 1.73
2981 4936 3.143211 ACGGTTAAGGGTTGTGCATAA 57.857 42.857 0.00 0.00 0.00 1.90
2982 4937 2.863132 ACGGTTAAGGGTTGTGCATA 57.137 45.000 0.00 0.00 0.00 3.14
2983 4938 2.224572 TGTACGGTTAAGGGTTGTGCAT 60.225 45.455 0.00 0.00 0.00 3.96
2984 4939 1.140452 TGTACGGTTAAGGGTTGTGCA 59.860 47.619 0.00 0.00 0.00 4.57
2985 4940 1.802365 CTGTACGGTTAAGGGTTGTGC 59.198 52.381 0.00 0.00 0.00 4.57
2986 4941 2.037511 TCCTGTACGGTTAAGGGTTGTG 59.962 50.000 0.00 0.00 0.00 3.33
2987 4942 2.037641 GTCCTGTACGGTTAAGGGTTGT 59.962 50.000 0.00 0.00 0.00 3.32
2988 4943 2.613725 GGTCCTGTACGGTTAAGGGTTG 60.614 54.545 0.00 0.00 0.00 3.77
2989 4944 1.625315 GGTCCTGTACGGTTAAGGGTT 59.375 52.381 0.00 0.00 0.00 4.11
2990 4945 1.269958 GGTCCTGTACGGTTAAGGGT 58.730 55.000 0.00 0.00 0.00 4.34
2991 4946 0.174162 CGGTCCTGTACGGTTAAGGG 59.826 60.000 0.00 0.00 0.00 3.95
2992 4947 0.459063 GCGGTCCTGTACGGTTAAGG 60.459 60.000 0.00 3.10 0.00 2.69
2993 4948 0.459063 GGCGGTCCTGTACGGTTAAG 60.459 60.000 0.00 0.00 0.00 1.85
2994 4949 0.899717 AGGCGGTCCTGTACGGTTAA 60.900 55.000 0.00 0.00 42.34 2.01
2995 4950 0.899717 AAGGCGGTCCTGTACGGTTA 60.900 55.000 0.00 0.00 43.40 2.85
2996 4951 1.761500 AAAGGCGGTCCTGTACGGTT 61.761 55.000 0.00 0.00 43.40 4.44
2997 4952 2.212110 AAAGGCGGTCCTGTACGGT 61.212 57.895 0.00 0.00 43.40 4.83
2998 4953 1.740296 CAAAGGCGGTCCTGTACGG 60.740 63.158 0.00 0.00 43.40 4.02
2999 4954 0.601841 AACAAAGGCGGTCCTGTACG 60.602 55.000 0.00 0.00 43.40 3.67
3000 4955 0.872388 CAACAAAGGCGGTCCTGTAC 59.128 55.000 0.00 0.00 43.40 2.90
3001 4956 0.470766 ACAACAAAGGCGGTCCTGTA 59.529 50.000 0.00 0.00 43.40 2.74
3002 4957 0.395173 AACAACAAAGGCGGTCCTGT 60.395 50.000 0.00 0.00 43.40 4.00
3003 4958 0.310854 GAACAACAAAGGCGGTCCTG 59.689 55.000 0.00 0.00 43.40 3.86
3005 4960 1.658114 GGAACAACAAAGGCGGTCC 59.342 57.895 0.00 0.00 0.00 4.46
3006 4961 1.281656 CGGAACAACAAAGGCGGTC 59.718 57.895 0.00 0.00 0.00 4.79
3007 4962 2.190841 CCGGAACAACAAAGGCGGT 61.191 57.895 0.00 0.00 0.00 5.68
3008 4963 2.642700 CCGGAACAACAAAGGCGG 59.357 61.111 0.00 0.00 0.00 6.13
3009 4964 2.642700 CCCGGAACAACAAAGGCG 59.357 61.111 0.73 0.00 0.00 5.52
3010 4965 2.338620 GCCCGGAACAACAAAGGC 59.661 61.111 0.73 0.00 0.00 4.35
3011 4966 1.524008 GAGGCCCGGAACAACAAAGG 61.524 60.000 0.73 0.00 0.00 3.11
3012 4967 1.852067 CGAGGCCCGGAACAACAAAG 61.852 60.000 0.73 0.00 33.91 2.77
3013 4968 1.894756 CGAGGCCCGGAACAACAAA 60.895 57.895 0.73 0.00 33.91 2.83
3014 4969 2.281208 CGAGGCCCGGAACAACAA 60.281 61.111 0.73 0.00 33.91 2.83
3015 4970 3.109592 AACGAGGCCCGGAACAACA 62.110 57.895 16.44 0.00 43.93 3.33
3016 4971 2.281276 AACGAGGCCCGGAACAAC 60.281 61.111 16.44 0.00 43.93 3.32
3017 4972 2.281208 CAACGAGGCCCGGAACAA 60.281 61.111 16.44 0.00 43.93 2.83
3040 4995 1.156736 CATGACAGTTTCCACGGGAC 58.843 55.000 0.00 0.00 0.00 4.46
3041 4996 0.762418 ACATGACAGTTTCCACGGGA 59.238 50.000 0.00 0.00 0.00 5.14
3042 4997 2.465860 TACATGACAGTTTCCACGGG 57.534 50.000 0.00 0.00 0.00 5.28
3043 4998 3.135225 TGTTACATGACAGTTTCCACGG 58.865 45.455 0.00 0.00 0.00 4.94
3044 4999 3.363970 GCTGTTACATGACAGTTTCCACG 60.364 47.826 14.16 0.00 46.81 4.94
3045 5000 3.563808 TGCTGTTACATGACAGTTTCCAC 59.436 43.478 14.16 0.36 46.81 4.02
3046 5001 3.814625 TGCTGTTACATGACAGTTTCCA 58.185 40.909 14.16 3.41 46.81 3.53
3047 5002 4.410492 CTGCTGTTACATGACAGTTTCC 57.590 45.455 14.16 1.23 46.81 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.