AutoCloner

Multiple sequence alignment - TraesCS5A01G427000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G427000	chr5A	100.000	2608	0	0	1	2608	611816416	611819023	0.000000e+00	4817.0
1	TraesCS5A01G427000	chr5A	98.324	179	3	0	1801	1979	611819055	611818877	5.420000e-82	315.0
2	TraesCS5A01G427000	chr5A	97.959	147	3	0	2462	2608	611818394	611818248	3.330000e-64	255.0
3	TraesCS5A01G427000	chr5B	92.484	1397	58	19	431	1801	604225498	604226873	0.000000e+00	1954.0
4	TraesCS5A01G427000	chr5B	96.203	79	3	0	1801	1879	393990846	393990768	2.110000e-26	130.0
5	TraesCS5A01G427000	chr5B	93.617	47	3	0	2562	2608	393990768	393990814	1.290000e-08	71.3
6	TraesCS5A01G427000	chr5D	92.888	1139	28	19	686	1801	490165620	490166728	0.000000e+00	1605.0
7	TraesCS5A01G427000	chr5D	89.589	365	28	5	257	619	490165233	490165589	3.060000e-124	455.0
8	TraesCS5A01G427000	chr5D	89.571	326	30	4	1	325	490164918	490165240	6.720000e-111	411.0
9	TraesCS5A01G427000	chr7A	98.640	662	9	0	1801	2462	679112391	679111730	0.000000e+00	1173.0
10	TraesCS5A01G427000	chr7A	98.658	149	2	0	2460	2608	679112211	679112359	5.530000e-67	265.0
11	TraesCS5A01G427000	chr7A	96.471	85	3	0	1801	1885	679111652	679111736	9.730000e-30	141.0
12	TraesCS5A01G427000	chr3B	98.485	528	8	0	1801	2328	22600147	22599620	0.000000e+00	931.0
13	TraesCS5A01G427000	chr3B	97.987	149	3	0	2460	2608	22599967	22600115	2.570000e-65	259.0
14	TraesCS5A01G427000	chr3B	96.748	123	4	0	2340	2462	22599377	22599255	3.400000e-49	206.0
15	TraesCS5A01G427000	chr3B	93.939	66	4	0	1820	1885	22599196	22599261	1.650000e-17	100.0
16	TraesCS5A01G427000	chr3B	94.340	53	3	0	2556	2608	22599261	22599209	5.980000e-12	82.4
17	TraesCS5A01G427000	chr7B	87.013	539	57	6	1801	2329	27309177	27309712	1.730000e-166	595.0
18	TraesCS5A01G427000	chr7B	86.296	540	59	8	1801	2329	199263482	199264017	8.100000e-160	573.0
19	TraesCS5A01G427000	chr7B	93.289	149	10	0	2460	2608	27309357	27309209	1.220000e-53	220.0
20	TraesCS5A01G427000	chr7B	92.941	85	6	0	1801	1885	27310161	27310077	9.800000e-25	124.0
21	TraesCS5A01G427000	chr7B	92.771	83	6	0	1803	1885	199264463	199264381	1.270000e-23	121.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G427000	chr5A	611816416	611819023	2607	False	4817.000000	4817	100.000000	1	2608	1	chr5A.!!$F1	2607
1	TraesCS5A01G427000	chr5A	611818248	611819055	807	True	285.000000	315	98.141500	1801	2608	2	chr5A.!!$R1	807
2	TraesCS5A01G427000	chr5B	604225498	604226873	1375	False	1954.000000	1954	92.484000	431	1801	1	chr5B.!!$F2	1370
3	TraesCS5A01G427000	chr5D	490164918	490166728	1810	False	823.666667	1605	90.682667	1	1801	3	chr5D.!!$F1	1800
4	TraesCS5A01G427000	chr7A	679111730	679112391	661	True	1173.000000	1173	98.640000	1801	2462	1	chr7A.!!$R1	661
5	TraesCS5A01G427000	chr7A	679111652	679112359	707	False	203.000000	265	97.564500	1801	2608	2	chr7A.!!$F1	807
6	TraesCS5A01G427000	chr3B	22599209	22600147	938	True	406.466667	931	96.524333	1801	2608	3	chr3B.!!$R1	807
7	TraesCS5A01G427000	chr7B	27309177	27309712	535	False	595.000000	595	87.013000	1801	2329	1	chr7B.!!$F1	528
8	TraesCS5A01G427000	chr7B	199263482	199264017	535	False	573.000000	573	86.296000	1801	2329	1	chr7B.!!$F2	528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
552	614	1.005450	GCCCTAAATCCTGGAACACCA	59.995	52.381	0.0	0.0	0.0	4.17	F
1020	1094	0.738063	CGCCGTACCAAGCACACATA	60.738	55.000	0.0	0.0	0.0	2.29	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1569	1649	0.036671	ACCTGCCGTAGTAAGCAACC	60.037	55.0	0.0	0.0	38.82	3.77	R
1979	2295	0.461870	ACGACAGCAGTGCAGACAAA	60.462	50.0	19.2	0.0	0.00	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	2.809446	TGATATGCGGTCTTTGTCTCG	58.191	47.619	0.00	0.00	0.00	4.04
46	47	2.864343	CGGTCTTTGTCTCGTTCTTTGT	59.136	45.455	0.00	0.00	0.00	2.83
48	49	3.546218	GGTCTTTGTCTCGTTCTTTGTGC	60.546	47.826	0.00	0.00	0.00	4.57
49	50	2.284150	TCTTTGTCTCGTTCTTTGTGCG	59.716	45.455	0.00	0.00	0.00	5.34
65	66	4.015872	TGTGCGGAGGAAGTAAAAAGAT	57.984	40.909	0.00	0.00	0.00	2.40
102	103	4.142293	GGGCTCCTTTGATTCAATTGACTC	60.142	45.833	16.65	16.65	0.00	3.36
103	104	4.704057	GGCTCCTTTGATTCAATTGACTCT	59.296	41.667	22.02	5.84	0.00	3.24
112	113	8.511604	TTGATTCAATTGACTCTTAGGATTCC	57.488	34.615	22.02	0.00	0.00	3.01
115	116	5.994250	TCAATTGACTCTTAGGATTCCTGG	58.006	41.667	15.80	8.15	34.61	4.45
127	128	2.373502	GGATTCCTGGAGGATTCGGATT	59.626	50.000	10.19	0.00	44.98	3.01
131	132	3.115390	TCCTGGAGGATTCGGATTCTTT	58.885	45.455	0.00	0.00	39.78	2.52
198	200	5.343307	AATTCCAAAGACTGTTTTGCACT	57.657	34.783	0.00	0.00	36.86	4.40
207	209	5.523369	AGACTGTTTTGCACTCTATTTTGC	58.477	37.500	0.00	0.00	39.33	3.68
218	220	6.424509	TGCACTCTATTTTGCAGGAAAATTTG	59.575	34.615	16.84	10.91	43.79	2.32
245	247	8.664798	CATCCACTCAAATCTCGTTTTACAATA	58.335	33.333	0.00	0.00	0.00	1.90
246	248	8.786826	TCCACTCAAATCTCGTTTTACAATAT	57.213	30.769	0.00	0.00	0.00	1.28
247	249	9.878667	TCCACTCAAATCTCGTTTTACAATATA	57.121	29.630	0.00	0.00	0.00	0.86
282	284	1.857049	TGGCACTCCCAAAATCCCA	59.143	52.632	0.00	0.00	41.82	4.37
284	286	1.347062	GGCACTCCCAAAATCCCAAA	58.653	50.000	0.00	0.00	0.00	3.28
287	289	2.833943	GCACTCCCAAAATCCCAAATCT	59.166	45.455	0.00	0.00	0.00	2.40
306	308	4.574674	TCTTGTGGCTTGACAATCCTAT	57.425	40.909	9.38	0.00	35.32	2.57
315	317	6.436847	TGGCTTGACAATCCTATTGAATTCAA	59.563	34.615	22.52	22.52	40.51	2.69
319	321	8.408043	TTGACAATCCTATTGAATTCAAGTGT	57.592	30.769	24.17	16.53	39.47	3.55
320	322	7.819644	TGACAATCCTATTGAATTCAAGTGTG	58.180	34.615	24.17	17.08	39.47	3.82
321	323	6.624423	ACAATCCTATTGAATTCAAGTGTGC	58.376	36.000	24.17	0.00	39.47	4.57
322	324	6.209192	ACAATCCTATTGAATTCAAGTGTGCA	59.791	34.615	24.17	8.09	39.47	4.57
323	325	7.093640	ACAATCCTATTGAATTCAAGTGTGCAT	60.094	33.333	24.17	9.75	39.47	3.96
324	326	6.198650	TCCTATTGAATTCAAGTGTGCATG	57.801	37.500	24.17	8.41	39.47	4.06
325	327	4.802039	CCTATTGAATTCAAGTGTGCATGC	59.198	41.667	24.17	11.82	39.47	4.06
326	328	2.728690	TGAATTCAAGTGTGCATGCC	57.271	45.000	16.68	7.25	0.00	4.40
327	329	1.962100	TGAATTCAAGTGTGCATGCCA	59.038	42.857	16.68	10.08	0.00	4.92
328	330	2.563620	TGAATTCAAGTGTGCATGCCAT	59.436	40.909	16.68	0.00	0.00	4.40
382	444	7.621428	TGTTTTGAAATTCCTGCAAATCAAA	57.379	28.000	0.00	0.00	34.50	2.69
474	536	5.478679	AGGGATTGAATAGTCTCGTCATAGG	59.521	44.000	0.00	0.00	0.00	2.57
475	537	5.477291	GGGATTGAATAGTCTCGTCATAGGA	59.523	44.000	0.00	0.00	0.00	2.94
517	579	9.819267	CCTACGATTTTTCTCTACTTTTCCTAT	57.181	33.333	0.00	0.00	0.00	2.57
542	604	2.828661	ACCAAAGAGGCCCTAAATCC	57.171	50.000	0.00	0.00	43.14	3.01
551	613	1.685180	GGCCCTAAATCCTGGAACACC	60.685	57.143	0.00	0.00	0.00	4.16
552	614	1.005450	GCCCTAAATCCTGGAACACCA	59.995	52.381	0.00	0.00	0.00	4.17
634	697	1.898574	AAAGTGGCACCTTGCGAGG	60.899	57.895	19.26	19.26	46.21	4.63
659	722	5.126396	ACCAAAGAACACCTAGTACGTAC	57.874	43.478	18.10	18.10	0.00	3.67
660	723	4.161333	CCAAAGAACACCTAGTACGTACG	58.839	47.826	19.49	15.01	0.00	3.67
745	808	9.635520	AGGCACGTTGATTATACACTATAATAC	57.364	33.333	0.00	0.00	40.46	1.89
947	1021	1.134340	AGCCAGTATCTCGTCTCGACT	60.134	52.381	0.00	0.00	0.00	4.18
948	1022	1.262151	GCCAGTATCTCGTCTCGACTC	59.738	57.143	0.00	0.00	0.00	3.36
1019	1093	2.032634	CGCCGTACCAAGCACACAT	61.033	57.895	0.00	0.00	0.00	3.21
1020	1094	0.738063	CGCCGTACCAAGCACACATA	60.738	55.000	0.00	0.00	0.00	2.29
1021	1095	1.006832	GCCGTACCAAGCACACATAG	58.993	55.000	0.00	0.00	0.00	2.23
1022	1096	1.404986	GCCGTACCAAGCACACATAGA	60.405	52.381	0.00	0.00	0.00	1.98
1023	1097	2.540515	CCGTACCAAGCACACATAGAG	58.459	52.381	0.00	0.00	0.00	2.43
1024	1098	2.165641	CCGTACCAAGCACACATAGAGA	59.834	50.000	0.00	0.00	0.00	3.10
1025	1099	3.439293	CGTACCAAGCACACATAGAGAG	58.561	50.000	0.00	0.00	0.00	3.20
1026	1100	3.119459	CGTACCAAGCACACATAGAGAGT	60.119	47.826	0.00	0.00	0.00	3.24
1027	1101	4.618460	CGTACCAAGCACACATAGAGAGTT	60.618	45.833	0.00	0.00	0.00	3.01
1060	1134	1.012841	GCATCACACAGCTAGCTTCC	58.987	55.000	16.46	0.00	0.00	3.46
1362	1437	2.420129	GCTGTTCCCTGGATACGATGTT	60.420	50.000	0.00	0.00	42.51	2.71
1368	1443	1.538204	CCTGGATACGATGTTCCCGTG	60.538	57.143	0.00	0.00	40.76	4.94
1506	1581	1.259609	CCAACACCATGCAGTCCATT	58.740	50.000	0.00	0.00	29.71	3.16
1530	1605	2.338785	GCTCTGCTCAACCCCTTGC	61.339	63.158	0.00	0.00	0.00	4.01
1547	1627	3.409851	TTGCGCTAATTGATCAGCAAG	57.590	42.857	9.73	5.14	40.42	4.01
1594	1674	0.819582	TTACTACGGCAGGTACCAGC	59.180	55.000	20.44	20.44	0.00	4.85
1627	1719	5.521906	ACACATGCATACTCCTAGTACTG	57.478	43.478	5.39	0.00	32.84	2.74
1979	2295	1.227556	GCAGTCCACACCGACAGTT	60.228	57.895	0.00	0.00	35.07	3.16
2369	3125	4.980805	GTGCACTTCCGGCGTCCA	62.981	66.667	10.32	0.00	0.00	4.02
2440	3196	2.045047	AGGAGGATGAAGGAGACAGGAA	59.955	50.000	0.00	0.00	0.00	3.36
2452	3219	4.163458	AGGAGACAGGAAACAGTTGTACAA	59.837	41.667	3.59	3.59	0.00	2.41
2506	3275	3.636231	CCAGGGTGCTTCCGGTGA	61.636	66.667	0.00	0.00	37.00	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	2.961526	ACGAGACAAAGACCGCATAT	57.038	45.000	0.00	0.00	0.00	1.78
24	25	1.499049	AAGAACGAGACAAAGACCGC	58.501	50.000	0.00	0.00	0.00	5.68
25	26	2.864343	ACAAAGAACGAGACAAAGACCG	59.136	45.455	0.00	0.00	0.00	4.79
38	39	1.594331	ACTTCCTCCGCACAAAGAAC	58.406	50.000	0.00	0.00	0.00	3.01
46	47	4.015872	ACATCTTTTTACTTCCTCCGCA	57.984	40.909	0.00	0.00	0.00	5.69
48	49	6.554334	TCAAACATCTTTTTACTTCCTCCG	57.446	37.500	0.00	0.00	0.00	4.63
49	50	6.016276	TGCTCAAACATCTTTTTACTTCCTCC	60.016	38.462	0.00	0.00	0.00	4.30
65	66	3.751767	AGCCCTCAATGCTCAAACA	57.248	47.368	0.00	0.00	32.41	2.83
112	113	3.118261	TCCAAAGAATCCGAATCCTCCAG	60.118	47.826	0.00	0.00	0.00	3.86
115	116	6.456795	AAAATCCAAAGAATCCGAATCCTC	57.543	37.500	0.00	0.00	0.00	3.71
164	165	9.981460	ACAGTCTTTGGAATTTTCTAATCCTAT	57.019	29.630	0.00	0.00	0.00	2.57
165	166	9.807921	AACAGTCTTTGGAATTTTCTAATCCTA	57.192	29.630	0.00	0.00	0.00	2.94
172	173	6.313658	GTGCAAAACAGTCTTTGGAATTTTCT	59.686	34.615	0.00	0.00	38.21	2.52
207	209	4.524316	TGAGTGGATGCAAATTTTCCTG	57.476	40.909	8.50	0.00	0.00	3.86
218	220	4.425577	AAAACGAGATTTGAGTGGATGC	57.574	40.909	0.00	0.00	0.00	3.91
245	247	4.340666	TGCCACATGCCACGAAAAATATAT	59.659	37.500	0.00	0.00	40.16	0.86
246	248	3.696548	TGCCACATGCCACGAAAAATATA	59.303	39.130	0.00	0.00	40.16	0.86
247	249	2.495270	TGCCACATGCCACGAAAAATAT	59.505	40.909	0.00	0.00	40.16	1.28
249	251	0.678395	TGCCACATGCCACGAAAAAT	59.322	45.000	0.00	0.00	40.16	1.82
275	277	3.903090	TCAAGCCACAAGATTTGGGATTT	59.097	39.130	0.00	0.00	35.62	2.17
276	278	3.259123	GTCAAGCCACAAGATTTGGGATT	59.741	43.478	0.00	0.00	35.62	3.01
277	279	2.827921	GTCAAGCCACAAGATTTGGGAT	59.172	45.455	0.00	0.00	35.62	3.85
282	284	4.154942	AGGATTGTCAAGCCACAAGATTT	58.845	39.130	21.51	0.00	39.63	2.17
284	286	3.446442	AGGATTGTCAAGCCACAAGAT	57.554	42.857	21.51	0.00	39.63	2.40
287	289	4.661222	TCAATAGGATTGTCAAGCCACAA	58.339	39.130	21.51	7.27	40.13	3.33
306	308	2.364647	TGGCATGCACACTTGAATTCAA	59.635	40.909	21.36	19.45	0.00	2.69
315	317	3.688694	AATGAAAATGGCATGCACACT	57.311	38.095	21.36	1.81	0.00	3.55
319	321	3.997681	CACAGAAATGAAAATGGCATGCA	59.002	39.130	21.36	6.13	0.00	3.96
320	322	3.998341	ACACAGAAATGAAAATGGCATGC	59.002	39.130	9.90	9.90	0.00	4.06
321	323	6.548441	AAACACAGAAATGAAAATGGCATG	57.452	33.333	0.00	0.00	0.00	4.06
322	324	7.571080	AAAAACACAGAAATGAAAATGGCAT	57.429	28.000	0.00	0.00	0.00	4.40
323	325	6.998968	AAAAACACAGAAATGAAAATGGCA	57.001	29.167	0.00	0.00	0.00	4.92
356	418	7.249186	TGATTTGCAGGAATTTCAAAACAAG	57.751	32.000	0.00	0.00	32.29	3.16
357	419	7.621428	TTGATTTGCAGGAATTTCAAAACAA	57.379	28.000	0.00	11.31	38.90	2.83
364	426	5.476614	AGCTCTTTGATTTGCAGGAATTTC	58.523	37.500	0.00	0.00	0.00	2.17
488	550	7.201539	GGAAAAGTAGAGAAAAATCGTAGGAGC	60.202	40.741	0.00	0.00	0.00	4.70
489	551	8.035984	AGGAAAAGTAGAGAAAAATCGTAGGAG	58.964	37.037	0.00	0.00	0.00	3.69
517	579	1.075601	AGGGCCTCTTTGGTTCATCA	58.924	50.000	0.00	0.00	38.35	3.07
518	580	3.366052	TTAGGGCCTCTTTGGTTCATC	57.634	47.619	10.74	0.00	38.35	2.92
519	581	3.825908	TTTAGGGCCTCTTTGGTTCAT	57.174	42.857	10.74	0.00	38.35	2.57
524	586	2.659428	CAGGATTTAGGGCCTCTTTGG	58.341	52.381	10.74	0.00	39.35	3.28
551	613	1.135489	AGATGCACAAGCGCTTTCATG	60.135	47.619	22.51	19.40	46.23	3.07
552	614	1.135489	CAGATGCACAAGCGCTTTCAT	60.135	47.619	22.51	22.15	46.23	2.57
634	697	2.165319	ACTAGGTGTTCTTTGGTCGC	57.835	50.000	0.00	0.00	0.00	5.19
659	722	4.439016	GGTCCTAAAGACTTCTCTGCTACG	60.439	50.000	0.00	0.00	45.54	3.51
660	723	4.439016	CGGTCCTAAAGACTTCTCTGCTAC	60.439	50.000	0.00	0.00	45.54	3.58
888	960	4.292186	TGAGAGGAATTGAAGGAAGTGG	57.708	45.455	0.00	0.00	0.00	4.00
947	1021	1.682684	GAGCGTGGGGGAGAAGAGA	60.683	63.158	0.00	0.00	0.00	3.10
948	1022	0.395862	TAGAGCGTGGGGGAGAAGAG	60.396	60.000	0.00	0.00	0.00	2.85
989	1063	1.078072	TACGGCGTGGCAATGGATT	60.078	52.632	24.86	0.00	0.00	3.01
1019	1093	4.265893	CCTGCTGTGTCTCTAACTCTCTA	58.734	47.826	0.00	0.00	0.00	2.43
1020	1094	3.088532	CCTGCTGTGTCTCTAACTCTCT	58.911	50.000	0.00	0.00	0.00	3.10
1021	1095	2.416701	GCCTGCTGTGTCTCTAACTCTC	60.417	54.545	0.00	0.00	0.00	3.20
1022	1096	1.548269	GCCTGCTGTGTCTCTAACTCT	59.452	52.381	0.00	0.00	0.00	3.24
1023	1097	1.273606	TGCCTGCTGTGTCTCTAACTC	59.726	52.381	0.00	0.00	0.00	3.01
1024	1098	1.342074	TGCCTGCTGTGTCTCTAACT	58.658	50.000	0.00	0.00	0.00	2.24
1025	1099	2.275318	GATGCCTGCTGTGTCTCTAAC	58.725	52.381	0.00	0.00	0.00	2.34
1026	1100	1.901833	TGATGCCTGCTGTGTCTCTAA	59.098	47.619	0.00	0.00	0.00	2.10
1027	1101	1.205655	GTGATGCCTGCTGTGTCTCTA	59.794	52.381	0.00	0.00	0.00	2.43
1060	1134	3.039405	CGTAGCTTGATTAGTCGCAGAG	58.961	50.000	0.00	0.00	36.95	3.35
1132	1207	1.603739	GGAGGCCGCTTTTCTTGGT	60.604	57.895	6.40	0.00	0.00	3.67
1208	1283	2.429930	CGTGGGCCTTCTTGGTCA	59.570	61.111	4.53	0.00	43.75	4.02
1353	1428	1.227147	CGCCACGGGAACATCGTAT	60.227	57.895	0.00	0.00	38.94	3.06
1368	1443	4.301027	CCCTCGTCCATAGGCGCC	62.301	72.222	21.89	21.89	32.34	6.53
1530	1605	3.620929	ATGCTTGCTGATCAATTAGCG	57.379	42.857	14.31	0.00	41.77	4.26
1565	1645	1.067142	TGCCGTAGTAAGCAACCTCTG	60.067	52.381	0.00	0.00	35.69	3.35
1567	1647	1.641577	CTGCCGTAGTAAGCAACCTC	58.358	55.000	0.00	0.00	38.82	3.85
1569	1649	0.036671	ACCTGCCGTAGTAAGCAACC	60.037	55.000	0.00	0.00	38.82	3.77
1594	1674	6.870965	GGAGTATGCATGTGTAATCTTCTAGG	59.129	42.308	10.16	0.00	0.00	3.02
1641	1733	2.421424	CTGCCTGGCTAACTGATTTGTC	59.579	50.000	21.03	0.00	0.00	3.18
1979	2295	0.461870	ACGACAGCAGTGCAGACAAA	60.462	50.000	19.20	0.00	0.00	2.83
2369	3125	1.935873	CAATGGAGCAATGACGACGAT	59.064	47.619	0.00	0.00	0.00	3.73
2426	3182	3.199946	ACAACTGTTTCCTGTCTCCTTCA	59.800	43.478	0.00	0.00	0.00	3.02
2440	3196	3.815401	GTCTCCTGCATTGTACAACTGTT	59.185	43.478	11.22	0.00	0.00	3.16
2452	3219	1.188219	ACACCGACAGTCTCCTGCAT	61.188	55.000	0.00	0.00	42.81	3.96
2516	3285	2.076863	GTCTTAGCAGCAATGGAACGT	58.923	47.619	0.00	0.00	0.00	3.99

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.