Multiple sequence alignment - TraesCS5A01G426600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G426600 chr5A 100.000 5094 0 0 1 5094 611633910 611628817 0.000000e+00 9407.0
1 TraesCS5A01G426600 chr5A 94.422 251 11 2 1993 2243 645413292 645413045 2.880000e-102 383.0
2 TraesCS5A01G426600 chr5A 95.789 95 4 0 2280 2374 645413048 645412954 2.460000e-33 154.0
3 TraesCS5A01G426600 chr5D 91.295 4871 217 95 1 4765 490007860 490003091 0.000000e+00 6455.0
4 TraesCS5A01G426600 chr5B 90.261 4826 227 105 7 4726 604145162 604140474 0.000000e+00 6083.0
5 TraesCS5A01G426600 chr2D 84.918 1220 163 14 1170 2377 298942652 298941442 0.000000e+00 1214.0
6 TraesCS5A01G426600 chr2A 84.918 1220 163 13 1170 2377 372737280 372736070 0.000000e+00 1214.0
7 TraesCS5A01G426600 chr2B 84.791 1223 162 15 1170 2377 356316207 356317420 0.000000e+00 1206.0
8 TraesCS5A01G426600 chr3A 85.849 424 51 6 1164 1587 12562516 12562930 4.680000e-120 442.0
9 TraesCS5A01G426600 chr3B 89.610 308 28 1 1185 1492 10172041 10171738 6.180000e-104 388.0
10 TraesCS5A01G426600 chr3B 98.485 66 1 0 2309 2374 826146449 826146514 3.220000e-22 117.0
11 TraesCS5A01G426600 chr3D 87.538 329 30 6 1164 1492 7969837 7969520 2.240000e-98 370.0
12 TraesCS5A01G426600 chr1D 77.977 613 99 12 995 1607 108361668 108362244 8.110000e-93 351.0
13 TraesCS5A01G426600 chr7A 92.437 119 7 1 1982 2098 83536073 83536191 8.770000e-38 169.0
14 TraesCS5A01G426600 chr7A 97.895 95 1 1 2277 2370 83536219 83536313 4.080000e-36 163.0
15 TraesCS5A01G426600 chr4A 98.851 87 1 0 2280 2366 21864730 21864816 6.830000e-34 156.0
16 TraesCS5A01G426600 chr4A 91.509 106 9 0 1993 2098 21864592 21864697 4.110000e-31 147.0
17 TraesCS5A01G426600 chr4B 98.462 65 1 0 2310 2374 27405159 27405095 1.160000e-21 115.0
18 TraesCS5A01G426600 chr4D 84.956 113 9 5 883 989 301763857 301763747 1.940000e-19 108.0
19 TraesCS5A01G426600 chr7D 86.538 52 3 1 883 930 619228322 619228373 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G426600 chr5A 611628817 611633910 5093 True 9407 9407 100.000 1 5094 1 chr5A.!!$R1 5093
1 TraesCS5A01G426600 chr5D 490003091 490007860 4769 True 6455 6455 91.295 1 4765 1 chr5D.!!$R1 4764
2 TraesCS5A01G426600 chr5B 604140474 604145162 4688 True 6083 6083 90.261 7 4726 1 chr5B.!!$R1 4719
3 TraesCS5A01G426600 chr2D 298941442 298942652 1210 True 1214 1214 84.918 1170 2377 1 chr2D.!!$R1 1207
4 TraesCS5A01G426600 chr2A 372736070 372737280 1210 True 1214 1214 84.918 1170 2377 1 chr2A.!!$R1 1207
5 TraesCS5A01G426600 chr2B 356316207 356317420 1213 False 1206 1206 84.791 1170 2377 1 chr2B.!!$F1 1207
6 TraesCS5A01G426600 chr1D 108361668 108362244 576 False 351 351 77.977 995 1607 1 chr1D.!!$F1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 819 0.179084 CGTCTCTCGCTCTCTCTCCT 60.179 60.000 0.00 0.0 0.00 3.69 F
773 823 2.158957 TCTCTCGCTCTCTCTCCTTCTC 60.159 54.545 0.00 0.0 0.00 2.87 F
897 949 2.290093 GGAATAGCAGCAACATCAGCTC 59.710 50.000 0.00 0.0 41.14 4.09 F
2825 2932 1.278699 GCCAGCCCATTGGAATTTTCA 59.721 47.619 3.62 0.0 40.87 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2436 2532 0.533491 TGATGTGGCGGTACAGTACC 59.467 55.000 18.85 18.85 45.52 3.34 R
2559 2657 1.141053 ACCCTCACCGGCAATATTCTC 59.859 52.381 0.00 0.00 0.00 2.87 R
2846 2953 2.136026 ACCCTCCAAGTTTCCAGAGTT 58.864 47.619 0.00 0.00 0.00 3.01 R
4703 4873 0.030638 CACCTGCCTTTTGTCCGTTG 59.969 55.000 0.00 0.00 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.714899 CCGCGCCCCTAAAACATCAG 61.715 60.000 0.00 0.00 0.00 2.90
83 84 3.425422 GCCATTGCTAAGGCCGAG 58.575 61.111 2.80 0.00 45.18 4.63
85 86 2.537560 CCATTGCTAAGGCCGAGCG 61.538 63.158 22.83 11.91 43.19 5.03
119 120 7.065803 TGCATTATTACGAGGAAGGAAAGAAAG 59.934 37.037 0.00 0.00 0.00 2.62
122 123 3.686916 ACGAGGAAGGAAAGAAAGGAG 57.313 47.619 0.00 0.00 0.00 3.69
335 353 2.448542 GGAGGATGGGGGCAGCTA 60.449 66.667 0.00 0.00 0.00 3.32
382 400 2.158355 TCTAGGTCCCCGGGAATAGAAG 60.158 54.545 26.32 12.15 32.70 2.85
478 496 4.778415 CGGCAGACCTCACGTCGG 62.778 72.222 0.00 0.00 46.92 4.79
479 497 4.436998 GGCAGACCTCACGTCGGG 62.437 72.222 5.48 3.83 46.92 5.14
480 498 4.436998 GCAGACCTCACGTCGGGG 62.437 72.222 8.02 5.48 46.92 5.73
481 499 4.436998 CAGACCTCACGTCGGGGC 62.437 72.222 8.02 4.83 46.92 5.80
560 597 1.512156 CCAACCGAACCGAACCTTGG 61.512 60.000 0.00 0.00 0.00 3.61
689 733 0.257616 CGTCTTCCTCCTCCTCCTCT 59.742 60.000 0.00 0.00 0.00 3.69
690 734 1.749286 CGTCTTCCTCCTCCTCCTCTC 60.749 61.905 0.00 0.00 0.00 3.20
691 735 1.569072 GTCTTCCTCCTCCTCCTCTCT 59.431 57.143 0.00 0.00 0.00 3.10
763 813 4.244802 CGGCCGTCTCTCGCTCTC 62.245 72.222 19.50 0.00 38.35 3.20
769 819 0.179084 CGTCTCTCGCTCTCTCTCCT 60.179 60.000 0.00 0.00 0.00 3.69
773 823 2.158957 TCTCTCGCTCTCTCTCCTTCTC 60.159 54.545 0.00 0.00 0.00 2.87
896 948 2.295885 GGAATAGCAGCAACATCAGCT 58.704 47.619 0.00 0.00 44.62 4.24
897 949 2.290093 GGAATAGCAGCAACATCAGCTC 59.710 50.000 0.00 0.00 41.14 4.09
916 968 2.961768 CCACCACCGCAAATCCAC 59.038 61.111 0.00 0.00 0.00 4.02
917 969 2.635443 CCACCACCGCAAATCCACC 61.635 63.158 0.00 0.00 0.00 4.61
918 970 2.671619 ACCACCGCAAATCCACCG 60.672 61.111 0.00 0.00 0.00 4.94
919 971 4.114997 CCACCGCAAATCCACCGC 62.115 66.667 0.00 0.00 0.00 5.68
920 972 4.114997 CACCGCAAATCCACCGCC 62.115 66.667 0.00 0.00 0.00 6.13
1890 1970 2.813908 GGCGGGTACAACGAGCTG 60.814 66.667 12.59 0.00 0.00 4.24
1944 2024 4.864334 GAGATGGGCCGGCTGGTG 62.864 72.222 28.56 0.00 37.67 4.17
2436 2532 3.474600 AGCATCATAACTAGCCTGCTTG 58.525 45.455 0.00 0.00 36.62 4.01
2499 2597 3.491104 CCACAACCTAGATTCTAGCGGTC 60.491 52.174 14.23 0.00 0.00 4.79
2729 2836 1.600636 CGCCCAAAACTGCAGAGGA 60.601 57.895 23.35 0.00 0.00 3.71
2781 2888 6.317893 ACAGATTAAATACTCCGGCGATTTTT 59.682 34.615 9.30 4.10 0.00 1.94
2825 2932 1.278699 GCCAGCCCATTGGAATTTTCA 59.721 47.619 3.62 0.00 40.87 2.69
2846 2953 4.957327 TCATTGAGAAATCCATTGGCATCA 59.043 37.500 0.00 0.00 0.00 3.07
2848 2955 4.724074 TGAGAAATCCATTGGCATCAAC 57.276 40.909 0.00 0.00 35.48 3.18
2849 2956 4.346730 TGAGAAATCCATTGGCATCAACT 58.653 39.130 0.00 0.00 35.48 3.16
2850 2957 4.400251 TGAGAAATCCATTGGCATCAACTC 59.600 41.667 0.00 3.26 35.48 3.01
3099 3212 1.664321 CCTGATGCTCAAGCCTTGGC 61.664 60.000 4.30 7.70 41.18 4.52
3212 3325 3.302740 GCGCCTTTCTGAGATTATTGACG 60.303 47.826 0.00 0.00 0.00 4.35
3220 3333 8.661352 TTTCTGAGATTATTGACGCATGATTA 57.339 30.769 0.00 0.00 0.00 1.75
3224 3337 9.888878 CTGAGATTATTGACGCATGATTAAAAT 57.111 29.630 0.00 0.00 0.00 1.82
3229 3342 5.895636 TTGACGCATGATTAAAATCCTGT 57.104 34.783 0.00 0.04 34.69 4.00
3235 3348 6.144854 CGCATGATTAAAATCCTGTACATGG 58.855 40.000 0.00 0.14 34.69 3.66
3247 3360 8.608185 AATCCTGTACATGGAACCAATAATTT 57.392 30.769 15.22 3.09 37.13 1.82
3249 3362 9.707957 ATCCTGTACATGGAACCAATAATTTTA 57.292 29.630 15.22 0.00 37.13 1.52
3251 3364 9.801873 CCTGTACATGGAACCAATAATTTTAAG 57.198 33.333 0.00 0.00 0.00 1.85
3252 3365 9.301153 CTGTACATGGAACCAATAATTTTAAGC 57.699 33.333 0.00 0.00 0.00 3.09
3254 3367 6.930731 ACATGGAACCAATAATTTTAAGCGT 58.069 32.000 0.00 0.00 0.00 5.07
3255 3368 6.811170 ACATGGAACCAATAATTTTAAGCGTG 59.189 34.615 0.00 0.00 0.00 5.34
3259 3372 7.971168 TGGAACCAATAATTTTAAGCGTGTATG 59.029 33.333 0.00 0.00 0.00 2.39
3260 3373 7.971722 GGAACCAATAATTTTAAGCGTGTATGT 59.028 33.333 0.00 0.00 0.00 2.29
3263 3376 9.997482 ACCAATAATTTTAAGCGTGTATGTTAG 57.003 29.630 0.00 0.00 0.00 2.34
3265 3378 9.445786 CAATAATTTTAAGCGTGTATGTTAGGG 57.554 33.333 0.00 0.00 0.00 3.53
3266 3379 8.967664 ATAATTTTAAGCGTGTATGTTAGGGA 57.032 30.769 0.00 0.00 0.00 4.20
3267 3380 7.690952 AATTTTAAGCGTGTATGTTAGGGAA 57.309 32.000 0.00 0.00 0.00 3.97
3270 3383 8.428186 TTTTAAGCGTGTATGTTAGGGAATAG 57.572 34.615 0.00 0.00 0.00 1.73
3285 3398 5.696030 AGGGAATAGGGATCAAAACTTAGC 58.304 41.667 0.00 0.00 0.00 3.09
3305 3418 8.190784 ACTTAGCATAAATAATTCTTGTGTGGC 58.809 33.333 0.00 0.00 0.00 5.01
3374 3487 1.255667 TGTAGACCCAGCCTCGGTTC 61.256 60.000 0.00 0.00 32.27 3.62
3384 3497 3.006859 CCAGCCTCGGTTCATGTATATCA 59.993 47.826 0.00 0.00 0.00 2.15
3430 3543 3.940852 CCATTGTGAAATCAGATGACCGA 59.059 43.478 7.79 0.00 0.00 4.69
3433 3546 3.588955 TGTGAAATCAGATGACCGACTG 58.411 45.455 0.00 0.00 35.72 3.51
3476 3589 2.539476 GCTTGGACAAAACTTGGTGTG 58.461 47.619 0.00 0.00 34.12 3.82
3488 3601 3.816994 ACTTGGTGTGGAGTTTTAGTCC 58.183 45.455 0.00 0.00 38.22 3.85
3490 3603 2.128535 TGGTGTGGAGTTTTAGTCCCA 58.871 47.619 0.00 0.00 36.88 4.37
3491 3604 2.158726 TGGTGTGGAGTTTTAGTCCCAC 60.159 50.000 0.00 0.00 46.82 4.61
3493 3606 2.825861 GTGGAGTTTTAGTCCCACGA 57.174 50.000 0.00 0.00 39.52 4.35
3500 3613 4.759782 AGTTTTAGTCCCACGATGATGAG 58.240 43.478 0.00 0.00 0.00 2.90
3501 3614 4.223032 AGTTTTAGTCCCACGATGATGAGT 59.777 41.667 0.00 0.00 0.00 3.41
3502 3615 4.819105 TTTAGTCCCACGATGATGAGTT 57.181 40.909 0.00 0.00 0.00 3.01
3503 3616 5.925506 TTTAGTCCCACGATGATGAGTTA 57.074 39.130 0.00 0.00 0.00 2.24
3504 3617 6.479972 TTTAGTCCCACGATGATGAGTTAT 57.520 37.500 0.00 0.00 0.00 1.89
3505 3618 4.327982 AGTCCCACGATGATGAGTTATG 57.672 45.455 0.00 0.00 0.00 1.90
3506 3619 3.070159 AGTCCCACGATGATGAGTTATGG 59.930 47.826 0.00 0.00 0.00 2.74
3507 3620 3.038280 TCCCACGATGATGAGTTATGGT 58.962 45.455 0.00 0.00 0.00 3.55
3508 3621 3.454447 TCCCACGATGATGAGTTATGGTT 59.546 43.478 0.00 0.00 0.00 3.67
3512 3625 6.049149 CCACGATGATGAGTTATGGTTAAGT 58.951 40.000 0.00 0.00 0.00 2.24
3516 3629 6.074088 CGATGATGAGTTATGGTTAAGTGAGC 60.074 42.308 0.00 0.00 0.00 4.26
3521 3634 6.530120 TGAGTTATGGTTAAGTGAGCAAGAA 58.470 36.000 0.00 0.00 0.00 2.52
3537 3650 4.365723 GCAAGAATATGCCATTCCTTGTG 58.634 43.478 12.01 1.54 40.49 3.33
3538 3651 4.142093 GCAAGAATATGCCATTCCTTGTGT 60.142 41.667 12.01 0.00 40.49 3.72
3555 3668 5.513094 CCTTGTGTCCACTCCTTTTCATAGA 60.513 44.000 0.00 0.00 0.00 1.98
3557 3670 3.927142 GTGTCCACTCCTTTTCATAGACG 59.073 47.826 0.00 0.00 0.00 4.18
3561 3674 1.906574 ACTCCTTTTCATAGACGGCCA 59.093 47.619 2.24 0.00 0.00 5.36
3564 3677 1.334869 CCTTTTCATAGACGGCCATGC 59.665 52.381 2.24 0.00 0.00 4.06
3565 3678 2.292267 CTTTTCATAGACGGCCATGCT 58.708 47.619 2.24 0.00 0.00 3.79
3602 3715 3.668141 ATCATGCACACCTCCCAATAA 57.332 42.857 0.00 0.00 0.00 1.40
3633 3750 1.003233 ACGACCTCCTGTGATTTTCCC 59.997 52.381 0.00 0.00 0.00 3.97
3687 3806 7.116805 CCTTGCACACAAAATTATTCCTCTTTC 59.883 37.037 0.00 0.00 34.74 2.62
3692 3811 9.971922 CACACAAAATTATTCCTCTTTCTTTCT 57.028 29.630 0.00 0.00 0.00 2.52
3787 3906 3.628017 CAAGTTCCTTTCGCGTGAAAAT 58.372 40.909 23.17 0.43 43.21 1.82
3788 3907 3.982576 AGTTCCTTTCGCGTGAAAATT 57.017 38.095 23.17 4.89 43.21 1.82
3789 3908 3.628017 AGTTCCTTTCGCGTGAAAATTG 58.372 40.909 23.17 14.99 43.21 2.32
3792 3911 2.030363 TCCTTTCGCGTGAAAATTGCAT 60.030 40.909 23.17 0.00 43.21 3.96
3794 3913 3.543494 CCTTTCGCGTGAAAATTGCATAG 59.457 43.478 23.17 10.13 43.21 2.23
3795 3914 2.823196 TCGCGTGAAAATTGCATAGG 57.177 45.000 5.77 0.00 0.00 2.57
3796 3915 1.191096 CGCGTGAAAATTGCATAGGC 58.809 50.000 0.00 0.00 41.68 3.93
3833 3960 5.525199 TGATTTGATAGCGCGTCTGTTATA 58.475 37.500 8.43 0.00 0.00 0.98
3835 3962 7.309920 TGATTTGATAGCGCGTCTGTTATATA 58.690 34.615 8.43 0.00 0.00 0.86
3903 4030 0.324552 TCGATTCCCCAACTCCCGTA 60.325 55.000 0.00 0.00 0.00 4.02
3905 4032 0.179092 GATTCCCCAACTCCCGTACG 60.179 60.000 8.69 8.69 0.00 3.67
3907 4034 4.807039 CCCCAACTCCCGTACGCG 62.807 72.222 10.49 3.53 37.95 6.01
3971 4098 2.357009 CCACTCATTCCATGCTGTTAGC 59.643 50.000 0.00 0.00 42.82 3.09
3975 4102 3.538591 TCATTCCATGCTGTTAGCTCAG 58.461 45.455 0.00 0.00 42.97 3.35
4003 4130 8.902540 ATCATATTATGCTTAACTCGTTCCAA 57.097 30.769 0.00 0.00 0.00 3.53
4005 4132 9.337396 TCATATTATGCTTAACTCGTTCCAATT 57.663 29.630 0.00 0.00 0.00 2.32
4099 4226 0.102120 CGAGCTGCCAGTAGAAGGAG 59.898 60.000 0.00 0.00 0.00 3.69
4100 4227 1.479709 GAGCTGCCAGTAGAAGGAGA 58.520 55.000 0.00 0.00 0.00 3.71
4101 4228 1.827969 GAGCTGCCAGTAGAAGGAGAA 59.172 52.381 0.00 0.00 0.00 2.87
4103 4230 1.134551 GCTGCCAGTAGAAGGAGAAGG 60.135 57.143 0.00 0.00 0.00 3.46
4104 4231 2.461695 CTGCCAGTAGAAGGAGAAGGA 58.538 52.381 0.00 0.00 0.00 3.36
4105 4232 3.037549 CTGCCAGTAGAAGGAGAAGGAT 58.962 50.000 0.00 0.00 0.00 3.24
4195 4325 1.900498 GCTCTGGCACCTGCTTTGT 60.900 57.895 0.00 0.00 41.70 2.83
4305 4447 2.411290 CGGTGGTTGTTGGTGTGC 59.589 61.111 0.00 0.00 0.00 4.57
4308 4450 2.055042 GTGGTTGTTGGTGTGCCCA 61.055 57.895 0.00 0.00 43.27 5.36
4360 4515 3.801050 CGAAGGCTATGATCTTCTGTGTG 59.199 47.826 0.00 0.00 37.73 3.82
4380 4535 6.093771 TGTGTGTGTATAGGAACGTTTTTGTT 59.906 34.615 0.46 0.00 34.02 2.83
4381 4536 6.968335 GTGTGTGTATAGGAACGTTTTTGTTT 59.032 34.615 0.46 0.00 30.75 2.83
4382 4537 7.485595 GTGTGTGTATAGGAACGTTTTTGTTTT 59.514 33.333 0.46 0.00 30.75 2.43
4383 4538 7.485277 TGTGTGTATAGGAACGTTTTTGTTTTG 59.515 33.333 0.46 0.00 30.75 2.44
4418 4577 4.014847 TCTTTGCGTCTGTTTGTTTCAG 57.985 40.909 0.00 0.00 0.00 3.02
4439 4599 0.688487 TTGTCTAACGGGGTTCTGGG 59.312 55.000 0.00 0.00 0.00 4.45
4449 4609 1.064825 GGGTTCTGGGGTGAAGAAGA 58.935 55.000 0.00 0.00 34.40 2.87
4451 4611 2.844348 GGGTTCTGGGGTGAAGAAGATA 59.156 50.000 0.00 0.00 34.40 1.98
4452 4612 3.459969 GGGTTCTGGGGTGAAGAAGATAT 59.540 47.826 0.00 0.00 34.40 1.63
4454 4614 4.372656 GTTCTGGGGTGAAGAAGATATCG 58.627 47.826 0.00 0.00 34.40 2.92
4488 4656 7.922278 GGGTTAAAAGTTAAAAGTGTTGTAGGG 59.078 37.037 0.00 0.00 0.00 3.53
4626 4795 3.654414 ACTGTGATTTGTCTCTTCCGTC 58.346 45.455 0.00 0.00 0.00 4.79
4695 4865 0.166814 GACAGCTGTGCGAATCAACC 59.833 55.000 27.27 0.95 0.00 3.77
4703 4873 0.665835 TGCGAATCAACCCACACAAC 59.334 50.000 0.00 0.00 0.00 3.32
4730 4900 4.096382 GGACAAAAGGCAGGTGTATATGTG 59.904 45.833 0.00 0.00 0.00 3.21
4736 4906 4.295201 AGGCAGGTGTATATGTGGAGTAA 58.705 43.478 0.00 0.00 0.00 2.24
4737 4907 4.719773 AGGCAGGTGTATATGTGGAGTAAA 59.280 41.667 0.00 0.00 0.00 2.01
4765 4942 7.124052 ACTATAGGTACTTGCTCCAACTAAGA 58.876 38.462 4.43 0.00 41.75 2.10
4766 4943 4.810191 AGGTACTTGCTCCAACTAAGAG 57.190 45.455 0.00 0.00 27.25 2.85
4774 4951 3.616956 CTCCAACTAAGAGCATCCACA 57.383 47.619 0.00 0.00 33.66 4.17
4775 4952 3.529533 CTCCAACTAAGAGCATCCACAG 58.470 50.000 0.00 0.00 33.66 3.66
4776 4953 2.906389 TCCAACTAAGAGCATCCACAGT 59.094 45.455 0.00 0.00 33.66 3.55
4777 4954 3.005554 CCAACTAAGAGCATCCACAGTG 58.994 50.000 0.00 0.00 33.66 3.66
4778 4955 3.557898 CCAACTAAGAGCATCCACAGTGT 60.558 47.826 0.00 0.00 33.66 3.55
4779 4956 4.067896 CAACTAAGAGCATCCACAGTGTT 58.932 43.478 0.00 0.00 33.66 3.32
4780 4957 4.357918 ACTAAGAGCATCCACAGTGTTT 57.642 40.909 0.00 0.00 33.66 2.83
4781 4958 5.483685 ACTAAGAGCATCCACAGTGTTTA 57.516 39.130 0.00 0.00 33.66 2.01
4782 4959 5.482908 ACTAAGAGCATCCACAGTGTTTAG 58.517 41.667 0.00 0.00 33.66 1.85
4783 4960 4.623932 AAGAGCATCCACAGTGTTTAGA 57.376 40.909 0.00 0.00 33.66 2.10
4784 4961 4.199432 AGAGCATCCACAGTGTTTAGAG 57.801 45.455 0.00 0.00 33.66 2.43
4785 4962 3.055530 AGAGCATCCACAGTGTTTAGAGG 60.056 47.826 0.00 0.00 33.66 3.69
4786 4963 1.740025 GCATCCACAGTGTTTAGAGGC 59.260 52.381 8.16 8.16 0.00 4.70
4787 4964 2.875672 GCATCCACAGTGTTTAGAGGCA 60.876 50.000 15.63 0.00 34.59 4.75
4788 4965 3.411446 CATCCACAGTGTTTAGAGGCAA 58.589 45.455 0.00 0.00 0.00 4.52
4789 4966 3.126001 TCCACAGTGTTTAGAGGCAAG 57.874 47.619 0.00 0.00 0.00 4.01
4790 4967 2.438021 TCCACAGTGTTTAGAGGCAAGT 59.562 45.455 0.00 0.00 0.00 3.16
4791 4968 3.118038 TCCACAGTGTTTAGAGGCAAGTT 60.118 43.478 0.00 0.00 0.00 2.66
4792 4969 3.632145 CCACAGTGTTTAGAGGCAAGTTT 59.368 43.478 0.00 0.00 0.00 2.66
4793 4970 4.498009 CCACAGTGTTTAGAGGCAAGTTTG 60.498 45.833 0.00 0.00 0.00 2.93
4807 4984 3.642705 CAAGTTTGCCTCTAAACCAAGC 58.357 45.455 0.00 0.00 40.54 4.01
4808 4985 3.229697 AGTTTGCCTCTAAACCAAGCT 57.770 42.857 0.00 0.00 40.54 3.74
4809 4986 2.887152 AGTTTGCCTCTAAACCAAGCTG 59.113 45.455 0.00 0.00 40.54 4.24
4810 4987 1.909700 TTGCCTCTAAACCAAGCTGG 58.090 50.000 0.00 0.00 45.02 4.85
4811 4988 0.038166 TGCCTCTAAACCAAGCTGGG 59.962 55.000 5.25 5.25 43.37 4.45
4812 4989 0.328258 GCCTCTAAACCAAGCTGGGA 59.672 55.000 16.25 0.00 43.37 4.37
4813 4990 1.950954 GCCTCTAAACCAAGCTGGGAC 60.951 57.143 16.25 0.00 43.37 4.46
4814 4991 1.340114 CCTCTAAACCAAGCTGGGACC 60.340 57.143 16.25 0.00 43.37 4.46
4815 4992 0.696501 TCTAAACCAAGCTGGGACCC 59.303 55.000 16.25 2.45 43.37 4.46
4816 4993 0.676782 CTAAACCAAGCTGGGACCCG 60.677 60.000 16.25 1.76 43.37 5.28
4817 4994 2.757980 TAAACCAAGCTGGGACCCGC 62.758 60.000 16.25 16.68 43.37 6.13
4820 4997 4.020617 CAAGCTGGGACCCGCTGA 62.021 66.667 24.49 0.00 34.72 4.26
4821 4998 3.249189 AAGCTGGGACCCGCTGAA 61.249 61.111 24.49 0.00 34.72 3.02
4822 4999 3.553095 AAGCTGGGACCCGCTGAAC 62.553 63.158 24.49 3.86 34.72 3.18
4823 5000 4.021925 GCTGGGACCCGCTGAACT 62.022 66.667 17.01 0.00 0.00 3.01
4824 5001 2.046892 CTGGGACCCGCTGAACTG 60.047 66.667 5.91 0.00 0.00 3.16
4825 5002 4.329545 TGGGACCCGCTGAACTGC 62.330 66.667 5.91 0.00 0.00 4.40
4827 5004 4.021925 GGACCCGCTGAACTGCCT 62.022 66.667 0.00 0.00 0.00 4.75
4828 5005 2.435059 GACCCGCTGAACTGCCTC 60.435 66.667 0.00 0.00 0.00 4.70
4829 5006 2.925170 ACCCGCTGAACTGCCTCT 60.925 61.111 0.00 0.00 0.00 3.69
4830 5007 1.605058 GACCCGCTGAACTGCCTCTA 61.605 60.000 0.00 0.00 0.00 2.43
4831 5008 1.192146 ACCCGCTGAACTGCCTCTAA 61.192 55.000 0.00 0.00 0.00 2.10
4832 5009 0.460987 CCCGCTGAACTGCCTCTAAG 60.461 60.000 0.00 0.00 0.00 2.18
4833 5010 1.086634 CCGCTGAACTGCCTCTAAGC 61.087 60.000 0.00 0.00 0.00 3.09
4834 5011 0.108424 CGCTGAACTGCCTCTAAGCT 60.108 55.000 0.00 0.00 0.00 3.74
4835 5012 1.674221 CGCTGAACTGCCTCTAAGCTT 60.674 52.381 3.48 3.48 0.00 3.74
4836 5013 2.417379 CGCTGAACTGCCTCTAAGCTTA 60.417 50.000 5.94 5.94 0.00 3.09
4837 5014 3.194062 GCTGAACTGCCTCTAAGCTTAG 58.806 50.000 24.90 24.90 0.00 2.18
4838 5015 3.118956 GCTGAACTGCCTCTAAGCTTAGA 60.119 47.826 29.65 29.65 37.44 2.10
4839 5016 4.442753 GCTGAACTGCCTCTAAGCTTAGAT 60.443 45.833 31.24 18.43 38.95 1.98
4840 5017 5.016051 TGAACTGCCTCTAAGCTTAGATG 57.984 43.478 31.24 28.36 38.95 2.90
4841 5018 4.711846 TGAACTGCCTCTAAGCTTAGATGA 59.288 41.667 31.30 19.77 38.95 2.92
4842 5019 5.187772 TGAACTGCCTCTAAGCTTAGATGAA 59.812 40.000 31.30 24.14 38.95 2.57
4843 5020 5.885449 ACTGCCTCTAAGCTTAGATGAAT 57.115 39.130 31.30 17.93 38.95 2.57
4844 5021 5.609423 ACTGCCTCTAAGCTTAGATGAATG 58.391 41.667 31.30 21.55 38.95 2.67
4845 5022 4.384056 TGCCTCTAAGCTTAGATGAATGC 58.616 43.478 31.30 26.24 38.95 3.56
4846 5023 4.102210 TGCCTCTAAGCTTAGATGAATGCT 59.898 41.667 31.30 0.00 38.95 3.79
4847 5024 5.062528 GCCTCTAAGCTTAGATGAATGCTT 58.937 41.667 31.30 0.00 45.94 3.91
4848 5025 5.179182 GCCTCTAAGCTTAGATGAATGCTTC 59.821 44.000 31.30 14.98 43.55 3.86
4849 5026 5.404968 CCTCTAAGCTTAGATGAATGCTTCG 59.595 44.000 31.24 17.51 43.55 3.79
4850 5027 3.959573 AAGCTTAGATGAATGCTTCGC 57.040 42.857 0.00 0.00 41.21 4.70
4851 5028 2.910199 AGCTTAGATGAATGCTTCGCA 58.090 42.857 0.00 0.00 44.86 5.10
4852 5029 2.871022 AGCTTAGATGAATGCTTCGCAG 59.129 45.455 0.00 0.00 43.65 5.18
4853 5030 2.611292 GCTTAGATGAATGCTTCGCAGT 59.389 45.455 0.00 0.00 43.65 4.40
4854 5031 3.545624 GCTTAGATGAATGCTTCGCAGTG 60.546 47.826 0.00 0.00 43.65 3.66
4855 5032 2.105006 AGATGAATGCTTCGCAGTGT 57.895 45.000 0.00 0.00 43.65 3.55
4856 5033 3.251479 AGATGAATGCTTCGCAGTGTA 57.749 42.857 0.00 0.00 43.65 2.90
4857 5034 2.932614 AGATGAATGCTTCGCAGTGTAC 59.067 45.455 0.00 0.00 43.65 2.90
4858 5035 2.455674 TGAATGCTTCGCAGTGTACT 57.544 45.000 0.00 0.00 43.65 2.73
4859 5036 2.068519 TGAATGCTTCGCAGTGTACTG 58.931 47.619 7.64 7.64 43.65 2.74
4860 5037 2.069273 GAATGCTTCGCAGTGTACTGT 58.931 47.619 13.08 0.00 43.65 3.55
4861 5038 1.714794 ATGCTTCGCAGTGTACTGTC 58.285 50.000 13.08 5.40 43.65 3.51
4862 5039 0.673985 TGCTTCGCAGTGTACTGTCT 59.326 50.000 13.08 0.00 45.45 3.41
4863 5040 1.335964 TGCTTCGCAGTGTACTGTCTC 60.336 52.381 13.08 0.00 45.45 3.36
4864 5041 1.068194 GCTTCGCAGTGTACTGTCTCT 60.068 52.381 13.08 0.00 45.45 3.10
4865 5042 2.161808 GCTTCGCAGTGTACTGTCTCTA 59.838 50.000 13.08 0.00 45.45 2.43
4866 5043 3.749404 CTTCGCAGTGTACTGTCTCTAC 58.251 50.000 13.08 0.00 45.45 2.59
4867 5044 3.055209 TCGCAGTGTACTGTCTCTACT 57.945 47.619 13.08 0.00 45.45 2.57
4868 5045 4.198028 TCGCAGTGTACTGTCTCTACTA 57.802 45.455 13.08 0.00 45.45 1.82
4869 5046 4.767478 TCGCAGTGTACTGTCTCTACTAT 58.233 43.478 13.08 0.00 45.45 2.12
4870 5047 5.910614 TCGCAGTGTACTGTCTCTACTATA 58.089 41.667 13.08 0.00 45.45 1.31
4871 5048 6.343703 TCGCAGTGTACTGTCTCTACTATAA 58.656 40.000 13.08 0.00 45.45 0.98
4872 5049 6.990939 TCGCAGTGTACTGTCTCTACTATAAT 59.009 38.462 13.08 0.00 45.45 1.28
4873 5050 7.498239 TCGCAGTGTACTGTCTCTACTATAATT 59.502 37.037 13.08 0.00 45.45 1.40
4874 5051 8.129840 CGCAGTGTACTGTCTCTACTATAATTT 58.870 37.037 13.08 0.00 45.45 1.82
4875 5052 9.804758 GCAGTGTACTGTCTCTACTATAATTTT 57.195 33.333 13.08 0.00 45.45 1.82
4892 5069 7.809546 ATAATTTTTAAGCTAGACCCAGAGC 57.190 36.000 0.00 0.00 39.08 4.09
4900 5077 4.408182 GCTAGACCCAGAGCTGAATAAA 57.592 45.455 0.00 0.00 35.73 1.40
4901 5078 4.770795 GCTAGACCCAGAGCTGAATAAAA 58.229 43.478 0.00 0.00 35.73 1.52
4902 5079 4.572795 GCTAGACCCAGAGCTGAATAAAAC 59.427 45.833 0.00 0.00 35.73 2.43
4903 5080 4.640771 AGACCCAGAGCTGAATAAAACA 57.359 40.909 0.00 0.00 0.00 2.83
4904 5081 4.327680 AGACCCAGAGCTGAATAAAACAC 58.672 43.478 0.00 0.00 0.00 3.32
4905 5082 4.072131 GACCCAGAGCTGAATAAAACACA 58.928 43.478 0.00 0.00 0.00 3.72
4906 5083 4.074970 ACCCAGAGCTGAATAAAACACAG 58.925 43.478 0.00 0.00 35.14 3.66
4907 5084 4.074970 CCCAGAGCTGAATAAAACACAGT 58.925 43.478 0.00 0.00 34.60 3.55
4908 5085 4.083110 CCCAGAGCTGAATAAAACACAGTG 60.083 45.833 0.00 0.00 34.60 3.66
4909 5086 4.516698 CCAGAGCTGAATAAAACACAGTGT 59.483 41.667 0.00 0.00 34.60 3.55
4910 5087 5.009010 CCAGAGCTGAATAAAACACAGTGTT 59.991 40.000 13.53 13.53 43.41 3.32
4923 5100 6.458232 AACACAGTGTTTTTATAGCAACCA 57.542 33.333 13.53 0.00 37.26 3.67
4924 5101 6.072112 ACACAGTGTTTTTATAGCAACCAG 57.928 37.500 0.00 0.00 0.00 4.00
4925 5102 4.917415 CACAGTGTTTTTATAGCAACCAGC 59.083 41.667 0.00 0.00 46.19 4.85
4926 5103 9.759756 AACACAGTGTTTTTATAGCAACCAGCC 62.760 40.741 13.53 0.00 40.24 4.85
4936 5113 1.322442 GCAACCAGCCCATCTATTCC 58.678 55.000 0.00 0.00 37.23 3.01
4937 5114 1.133668 GCAACCAGCCCATCTATTCCT 60.134 52.381 0.00 0.00 37.23 3.36
4938 5115 2.106511 GCAACCAGCCCATCTATTCCTA 59.893 50.000 0.00 0.00 37.23 2.94
4939 5116 3.245052 GCAACCAGCCCATCTATTCCTAT 60.245 47.826 0.00 0.00 37.23 2.57
4940 5117 4.330250 CAACCAGCCCATCTATTCCTATG 58.670 47.826 0.00 0.00 0.00 2.23
4941 5118 3.874316 ACCAGCCCATCTATTCCTATGA 58.126 45.455 0.00 0.00 0.00 2.15
4942 5119 3.584848 ACCAGCCCATCTATTCCTATGAC 59.415 47.826 0.00 0.00 0.00 3.06
4943 5120 3.843027 CCAGCCCATCTATTCCTATGACT 59.157 47.826 0.00 0.00 0.00 3.41
4944 5121 4.323333 CCAGCCCATCTATTCCTATGACTG 60.323 50.000 0.00 0.00 31.90 3.51
4945 5122 3.843027 AGCCCATCTATTCCTATGACTGG 59.157 47.826 0.00 0.00 0.00 4.00
4946 5123 3.620966 GCCCATCTATTCCTATGACTGGC 60.621 52.174 0.00 0.00 0.00 4.85
4947 5124 3.584406 CCCATCTATTCCTATGACTGGCA 59.416 47.826 0.00 0.00 0.00 4.92
4948 5125 4.042062 CCCATCTATTCCTATGACTGGCAA 59.958 45.833 0.00 0.00 0.00 4.52
4949 5126 5.243981 CCATCTATTCCTATGACTGGCAAG 58.756 45.833 0.00 0.00 0.00 4.01
4950 5127 5.221803 CCATCTATTCCTATGACTGGCAAGT 60.222 44.000 0.00 0.00 40.21 3.16
4951 5128 6.014242 CCATCTATTCCTATGACTGGCAAGTA 60.014 42.308 0.00 0.00 36.52 2.24
4952 5129 6.406692 TCTATTCCTATGACTGGCAAGTAC 57.593 41.667 0.00 0.00 36.52 2.73
4953 5130 3.520290 TTCCTATGACTGGCAAGTACG 57.480 47.619 0.00 0.00 36.52 3.67
4954 5131 2.453521 TCCTATGACTGGCAAGTACGT 58.546 47.619 0.00 0.00 36.52 3.57
4955 5132 3.623703 TCCTATGACTGGCAAGTACGTA 58.376 45.455 0.00 0.00 36.52 3.57
4956 5133 3.630769 TCCTATGACTGGCAAGTACGTAG 59.369 47.826 0.00 3.62 36.52 3.51
4958 5135 4.577693 CCTATGACTGGCAAGTACGTAGTA 59.422 45.833 2.72 0.00 45.11 1.82
4984 5161 3.383761 CACCTGAATGTGTTTTTCAGCC 58.616 45.455 7.70 0.00 45.62 4.85
4985 5162 2.365293 ACCTGAATGTGTTTTTCAGCCC 59.635 45.455 7.70 0.00 45.62 5.19
4986 5163 2.364970 CCTGAATGTGTTTTTCAGCCCA 59.635 45.455 7.70 0.00 45.62 5.36
4987 5164 3.181467 CCTGAATGTGTTTTTCAGCCCAA 60.181 43.478 7.70 0.00 45.62 4.12
4988 5165 4.440880 CTGAATGTGTTTTTCAGCCCAAA 58.559 39.130 0.94 0.00 42.44 3.28
4989 5166 4.440880 TGAATGTGTTTTTCAGCCCAAAG 58.559 39.130 0.00 0.00 0.00 2.77
4990 5167 4.081198 TGAATGTGTTTTTCAGCCCAAAGT 60.081 37.500 0.00 0.00 0.00 2.66
4991 5168 3.244033 TGTGTTTTTCAGCCCAAAGTG 57.756 42.857 0.00 0.00 0.00 3.16
4992 5169 2.564947 TGTGTTTTTCAGCCCAAAGTGT 59.435 40.909 0.00 0.00 0.00 3.55
4993 5170 3.007398 TGTGTTTTTCAGCCCAAAGTGTT 59.993 39.130 0.00 0.00 0.00 3.32
4994 5171 3.370672 GTGTTTTTCAGCCCAAAGTGTTG 59.629 43.478 0.00 0.00 34.25 3.33
5004 5181 1.512926 CAAAGTGTTGGAGAGGGACG 58.487 55.000 0.00 0.00 0.00 4.79
5005 5182 0.250338 AAAGTGTTGGAGAGGGACGC 60.250 55.000 0.00 0.00 0.00 5.19
5006 5183 1.122019 AAGTGTTGGAGAGGGACGCT 61.122 55.000 0.00 0.00 44.68 5.07
5007 5184 0.251653 AGTGTTGGAGAGGGACGCTA 60.252 55.000 0.00 0.00 39.71 4.26
5008 5185 0.606604 GTGTTGGAGAGGGACGCTAA 59.393 55.000 0.00 0.00 39.71 3.09
5009 5186 0.895530 TGTTGGAGAGGGACGCTAAG 59.104 55.000 0.00 0.00 39.71 2.18
5010 5187 1.183549 GTTGGAGAGGGACGCTAAGA 58.816 55.000 0.00 0.00 39.71 2.10
5011 5188 1.757699 GTTGGAGAGGGACGCTAAGAT 59.242 52.381 0.00 0.00 39.71 2.40
5012 5189 2.160721 TGGAGAGGGACGCTAAGATT 57.839 50.000 0.00 0.00 39.71 2.40
5013 5190 3.308035 TGGAGAGGGACGCTAAGATTA 57.692 47.619 0.00 0.00 39.71 1.75
5014 5191 3.223435 TGGAGAGGGACGCTAAGATTAG 58.777 50.000 0.00 0.00 39.71 1.73
5015 5192 3.117625 TGGAGAGGGACGCTAAGATTAGA 60.118 47.826 3.77 0.00 39.71 2.10
5016 5193 4.083565 GGAGAGGGACGCTAAGATTAGAT 58.916 47.826 3.77 0.00 39.71 1.98
5017 5194 4.082463 GGAGAGGGACGCTAAGATTAGATG 60.082 50.000 3.77 0.00 39.71 2.90
5018 5195 3.257127 AGAGGGACGCTAAGATTAGATGC 59.743 47.826 3.77 0.00 36.12 3.91
5019 5196 2.965831 AGGGACGCTAAGATTAGATGCA 59.034 45.455 3.77 0.00 32.47 3.96
5020 5197 3.580458 AGGGACGCTAAGATTAGATGCAT 59.420 43.478 0.00 0.00 32.47 3.96
5021 5198 3.929610 GGGACGCTAAGATTAGATGCATC 59.070 47.826 19.37 19.37 32.47 3.91
5022 5199 4.322349 GGGACGCTAAGATTAGATGCATCT 60.322 45.833 30.85 30.85 40.86 2.90
5023 5200 4.862018 GGACGCTAAGATTAGATGCATCTC 59.138 45.833 31.92 18.31 38.32 2.75
5024 5201 5.336372 GGACGCTAAGATTAGATGCATCTCT 60.336 44.000 31.92 20.26 38.32 3.10
5025 5202 6.095432 ACGCTAAGATTAGATGCATCTCTT 57.905 37.500 31.92 27.53 38.32 2.85
5026 5203 7.220741 ACGCTAAGATTAGATGCATCTCTTA 57.779 36.000 31.92 27.22 38.32 2.10
5027 5204 7.661968 ACGCTAAGATTAGATGCATCTCTTAA 58.338 34.615 31.92 21.00 38.32 1.85
5028 5205 7.812191 ACGCTAAGATTAGATGCATCTCTTAAG 59.188 37.037 31.92 25.16 38.32 1.85
5029 5206 7.275341 CGCTAAGATTAGATGCATCTCTTAAGG 59.725 40.741 31.92 20.26 38.32 2.69
5030 5207 8.310382 GCTAAGATTAGATGCATCTCTTAAGGA 58.690 37.037 31.92 10.75 38.32 3.36
5037 5214 6.803642 AGATGCATCTCTTAAGGATTTTTGC 58.196 36.000 23.75 6.50 29.30 3.68
5038 5215 6.606395 AGATGCATCTCTTAAGGATTTTTGCT 59.394 34.615 23.75 0.00 29.30 3.91
5039 5216 6.594788 TGCATCTCTTAAGGATTTTTGCTT 57.405 33.333 1.85 0.00 0.00 3.91
5040 5217 7.701539 TGCATCTCTTAAGGATTTTTGCTTA 57.298 32.000 1.85 0.00 0.00 3.09
5041 5218 7.765307 TGCATCTCTTAAGGATTTTTGCTTAG 58.235 34.615 1.85 0.00 0.00 2.18
5042 5219 7.611467 TGCATCTCTTAAGGATTTTTGCTTAGA 59.389 33.333 1.85 0.00 0.00 2.10
5043 5220 8.127954 GCATCTCTTAAGGATTTTTGCTTAGAG 58.872 37.037 1.85 0.00 0.00 2.43
5044 5221 9.388506 CATCTCTTAAGGATTTTTGCTTAGAGA 57.611 33.333 1.85 0.00 33.06 3.10
5045 5222 8.779354 TCTCTTAAGGATTTTTGCTTAGAGAC 57.221 34.615 1.85 0.00 0.00 3.36
5046 5223 8.598041 TCTCTTAAGGATTTTTGCTTAGAGACT 58.402 33.333 1.85 0.00 0.00 3.24
5047 5224 8.553459 TCTTAAGGATTTTTGCTTAGAGACTG 57.447 34.615 1.85 0.00 0.00 3.51
5048 5225 8.375506 TCTTAAGGATTTTTGCTTAGAGACTGA 58.624 33.333 1.85 0.00 0.00 3.41
5049 5226 8.553459 TTAAGGATTTTTGCTTAGAGACTGAG 57.447 34.615 0.00 0.00 0.00 3.35
5050 5227 5.495640 AGGATTTTTGCTTAGAGACTGAGG 58.504 41.667 0.00 0.00 0.00 3.86
5051 5228 5.013599 AGGATTTTTGCTTAGAGACTGAGGT 59.986 40.000 0.00 0.00 0.00 3.85
5052 5229 5.123027 GGATTTTTGCTTAGAGACTGAGGTG 59.877 44.000 0.00 0.00 0.00 4.00
5053 5230 2.751166 TTGCTTAGAGACTGAGGTGC 57.249 50.000 0.00 0.00 0.00 5.01
5054 5231 0.528017 TGCTTAGAGACTGAGGTGCG 59.472 55.000 0.00 0.00 0.00 5.34
5055 5232 0.804156 GCTTAGAGACTGAGGTGCGC 60.804 60.000 0.00 0.00 0.00 6.09
5056 5233 0.528017 CTTAGAGACTGAGGTGCGCA 59.472 55.000 5.66 5.66 0.00 6.09
5057 5234 0.528017 TTAGAGACTGAGGTGCGCAG 59.472 55.000 12.22 0.00 37.31 5.18
5058 5235 0.609406 TAGAGACTGAGGTGCGCAGT 60.609 55.000 12.22 4.08 46.30 4.40
5059 5236 1.735920 GAGACTGAGGTGCGCAGTG 60.736 63.158 12.22 1.48 43.91 3.66
5060 5237 2.029666 GACTGAGGTGCGCAGTGT 59.970 61.111 12.22 5.25 43.91 3.55
5061 5238 1.179174 AGACTGAGGTGCGCAGTGTA 61.179 55.000 12.22 0.00 43.91 2.90
5062 5239 0.108615 GACTGAGGTGCGCAGTGTAT 60.109 55.000 12.22 0.00 43.91 2.29
5063 5240 1.134367 GACTGAGGTGCGCAGTGTATA 59.866 52.381 12.22 0.00 43.91 1.47
5064 5241 1.135139 ACTGAGGTGCGCAGTGTATAG 59.865 52.381 12.22 7.57 42.43 1.31
5065 5242 1.405463 CTGAGGTGCGCAGTGTATAGA 59.595 52.381 12.22 0.00 0.00 1.98
5066 5243 1.405463 TGAGGTGCGCAGTGTATAGAG 59.595 52.381 12.22 0.00 0.00 2.43
5067 5244 0.747255 AGGTGCGCAGTGTATAGAGG 59.253 55.000 12.22 0.00 0.00 3.69
5068 5245 0.876342 GGTGCGCAGTGTATAGAGGC 60.876 60.000 12.22 0.00 0.00 4.70
5069 5246 0.179111 GTGCGCAGTGTATAGAGGCA 60.179 55.000 12.22 0.00 0.00 4.75
5070 5247 0.103026 TGCGCAGTGTATAGAGGCAG 59.897 55.000 5.66 0.00 0.00 4.85
5071 5248 1.218230 GCGCAGTGTATAGAGGCAGC 61.218 60.000 0.30 0.00 0.00 5.25
5072 5249 0.598680 CGCAGTGTATAGAGGCAGCC 60.599 60.000 1.84 1.84 0.00 4.85
5073 5250 0.755686 GCAGTGTATAGAGGCAGCCT 59.244 55.000 16.12 16.12 36.03 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.874390 TGATTCTGTGGTTTCTGCGC 59.126 50.000 0.00 0.00 0.00 6.09
83 84 3.001838 TCGTAATAATGCATTGTGGACGC 59.998 43.478 25.89 10.85 0.00 5.19
85 86 4.814234 TCCTCGTAATAATGCATTGTGGAC 59.186 41.667 22.27 15.01 0.00 4.02
119 120 0.391661 TTGTTCTGCTCCGATGCTCC 60.392 55.000 0.00 0.00 0.00 4.70
122 123 1.396301 CTTCTTGTTCTGCTCCGATGC 59.604 52.381 0.00 0.00 0.00 3.91
280 298 0.898326 AAAACAACCTCCGGCCATCC 60.898 55.000 2.24 0.00 0.00 3.51
464 482 4.436998 GCCCCGACGTGAGGTCTG 62.437 72.222 0.00 0.00 43.79 3.51
475 493 2.503382 GCAACTTTTTGGGCCCCGA 61.503 57.895 22.27 4.75 32.81 5.14
477 495 2.030412 CGCAACTTTTTGGGCCCC 59.970 61.111 22.27 0.85 38.67 5.80
482 500 1.654463 CGACGTACGCAACTTTTTGG 58.346 50.000 16.72 0.00 32.81 3.28
515 552 4.728102 CGTAAGCGGTCCGTGCCA 62.728 66.667 13.94 0.00 0.00 4.92
543 580 1.228033 CCCAAGGTTCGGTTCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
544 581 1.986632 AACCCAAGGTTCGGTTCGGT 61.987 55.000 0.00 0.00 43.05 4.69
545 582 1.228033 AACCCAAGGTTCGGTTCGG 60.228 57.895 0.00 0.00 43.05 4.30
546 583 0.816421 ACAACCCAAGGTTCGGTTCG 60.816 55.000 0.00 0.00 43.05 3.95
547 584 0.666374 CACAACCCAAGGTTCGGTTC 59.334 55.000 0.00 0.00 43.05 3.62
589 626 3.911698 TCAGTCGGTGTGCGCTGT 61.912 61.111 9.73 0.00 0.00 4.40
689 733 3.104512 ACCGAAGAGAGAGAGAGAGAGA 58.895 50.000 0.00 0.00 0.00 3.10
690 734 3.543680 ACCGAAGAGAGAGAGAGAGAG 57.456 52.381 0.00 0.00 0.00 3.20
691 735 3.992943 AACCGAAGAGAGAGAGAGAGA 57.007 47.619 0.00 0.00 0.00 3.10
760 810 4.624913 AGAGAGAGAGAGAAGGAGAGAGA 58.375 47.826 0.00 0.00 0.00 3.10
761 811 5.835819 TCTAGAGAGAGAGAGAAGGAGAGAG 59.164 48.000 0.00 0.00 0.00 3.20
762 812 5.598830 GTCTAGAGAGAGAGAGAAGGAGAGA 59.401 48.000 0.00 0.00 30.20 3.10
763 813 5.363868 TGTCTAGAGAGAGAGAGAAGGAGAG 59.636 48.000 0.00 0.00 30.20 3.20
769 819 7.681679 TGTTTAGTGTCTAGAGAGAGAGAGAA 58.318 38.462 0.00 0.00 30.20 2.87
773 823 8.788806 TCTTTTGTTTAGTGTCTAGAGAGAGAG 58.211 37.037 0.00 0.00 30.20 3.20
879 931 1.579698 CGAGCTGATGTTGCTGCTAT 58.420 50.000 0.00 0.00 42.14 2.97
880 932 1.086067 GCGAGCTGATGTTGCTGCTA 61.086 55.000 0.00 0.00 42.14 3.49
885 937 2.482374 GTGGCGAGCTGATGTTGC 59.518 61.111 0.00 0.00 0.00 4.17
888 940 2.046892 GTGGTGGCGAGCTGATGT 60.047 61.111 0.00 0.00 0.00 3.06
896 948 3.053291 GATTTGCGGTGGTGGCGA 61.053 61.111 0.00 0.00 0.00 5.54
897 949 4.114997 GGATTTGCGGTGGTGGCG 62.115 66.667 0.00 0.00 0.00 5.69
1944 2024 3.066814 AGCACGTACCCCTCCGAC 61.067 66.667 0.00 0.00 0.00 4.79
2436 2532 0.533491 TGATGTGGCGGTACAGTACC 59.467 55.000 18.85 18.85 45.52 3.34
2447 2543 1.594194 TTCGGTGGCAATGATGTGGC 61.594 55.000 0.00 0.00 44.09 5.01
2499 2597 2.103263 GGGGCAGGTTCATCTACTACTG 59.897 54.545 0.00 0.00 0.00 2.74
2559 2657 1.141053 ACCCTCACCGGCAATATTCTC 59.859 52.381 0.00 0.00 0.00 2.87
2729 2836 6.183360 GCTGCATATAAAACTCCAAGGGAAAT 60.183 38.462 0.00 0.00 0.00 2.17
2746 2853 6.656693 GGAGTATTTAATCTGTGGCTGCATAT 59.343 38.462 0.50 0.00 0.00 1.78
2825 2932 5.424252 AGTTGATGCCAATGGATTTCTCAAT 59.576 36.000 2.05 0.00 34.39 2.57
2846 2953 2.136026 ACCCTCCAAGTTTCCAGAGTT 58.864 47.619 0.00 0.00 0.00 3.01
2848 2955 2.907042 ACTACCCTCCAAGTTTCCAGAG 59.093 50.000 0.00 0.00 0.00 3.35
2849 2956 2.986050 ACTACCCTCCAAGTTTCCAGA 58.014 47.619 0.00 0.00 0.00 3.86
2850 2957 5.437191 AATACTACCCTCCAAGTTTCCAG 57.563 43.478 0.00 0.00 0.00 3.86
3099 3212 1.002888 AGACAGCAAGGATGTGAGTGG 59.997 52.381 0.00 0.00 30.17 4.00
3126 3239 3.427573 GGCCTACCATTACACCAAACTT 58.572 45.455 0.00 0.00 35.26 2.66
3156 3269 2.118313 TGCAGGTCACTCATTCCATG 57.882 50.000 0.00 0.00 0.00 3.66
3220 3333 8.608185 ATTATTGGTTCCATGTACAGGATTTT 57.392 30.769 9.54 0.29 34.56 1.82
3224 3337 9.535170 TTAAAATTATTGGTTCCATGTACAGGA 57.465 29.630 9.54 9.37 0.00 3.86
3229 3342 7.971168 CACGCTTAAAATTATTGGTTCCATGTA 59.029 33.333 0.00 0.00 0.00 2.29
3235 3348 8.905103 ACATACACGCTTAAAATTATTGGTTC 57.095 30.769 0.00 0.00 0.00 3.62
3247 3360 6.463331 CCCTATTCCCTAACATACACGCTTAA 60.463 42.308 0.00 0.00 0.00 1.85
3249 3362 4.202326 CCCTATTCCCTAACATACACGCTT 60.202 45.833 0.00 0.00 0.00 4.68
3251 3364 3.322828 TCCCTATTCCCTAACATACACGC 59.677 47.826 0.00 0.00 0.00 5.34
3252 3365 5.245301 TGATCCCTATTCCCTAACATACACG 59.755 44.000 0.00 0.00 0.00 4.49
3254 3367 7.699709 TTTGATCCCTATTCCCTAACATACA 57.300 36.000 0.00 0.00 0.00 2.29
3255 3368 8.218488 AGTTTTGATCCCTATTCCCTAACATAC 58.782 37.037 0.00 0.00 0.00 2.39
3259 3372 7.228906 GCTAAGTTTTGATCCCTATTCCCTAAC 59.771 40.741 0.00 0.00 0.00 2.34
3260 3373 7.092174 TGCTAAGTTTTGATCCCTATTCCCTAA 60.092 37.037 0.00 0.00 0.00 2.69
3263 3376 5.445964 TGCTAAGTTTTGATCCCTATTCCC 58.554 41.667 0.00 0.00 0.00 3.97
3285 3398 7.493320 AGCAATGCCACACAAGAATTATTTATG 59.507 33.333 0.00 0.00 0.00 1.90
3294 3407 0.032403 GCAGCAATGCCACACAAGAA 59.968 50.000 0.00 0.00 0.00 2.52
3297 3410 1.732417 TTCGCAGCAATGCCACACAA 61.732 50.000 0.00 0.00 0.00 3.33
3305 3418 1.667724 CTAAGGGTCTTCGCAGCAATG 59.332 52.381 0.00 0.00 0.00 2.82
3313 3426 3.449737 TCATTGGTACCTAAGGGTCTTCG 59.550 47.826 14.36 0.00 45.98 3.79
3328 3441 2.911636 TGGCCCAAATCATTTCATTGGT 59.088 40.909 0.00 0.00 41.62 3.67
3331 3444 7.835181 ACAAATAATGGCCCAAATCATTTCATT 59.165 29.630 0.00 1.61 35.50 2.57
3332 3445 7.348033 ACAAATAATGGCCCAAATCATTTCAT 58.652 30.769 0.00 0.00 35.50 2.57
3333 3446 6.719301 ACAAATAATGGCCCAAATCATTTCA 58.281 32.000 0.00 0.00 35.50 2.69
3334 3447 8.203485 TCTACAAATAATGGCCCAAATCATTTC 58.797 33.333 0.00 0.00 35.50 2.17
3335 3448 7.986889 GTCTACAAATAATGGCCCAAATCATTT 59.013 33.333 0.00 0.00 35.50 2.32
3374 3487 6.534793 TGTAGGCAATACGCATGATATACATG 59.465 38.462 0.00 0.00 45.17 3.21
3384 3497 4.133820 TGCTATTTGTAGGCAATACGCAT 58.866 39.130 0.00 0.00 45.17 4.73
3386 3499 4.378459 GGATGCTATTTGTAGGCAATACGC 60.378 45.833 0.00 0.00 39.46 4.42
3430 3543 2.758423 GTGTCCAAAGGTCCAAAACAGT 59.242 45.455 0.00 0.00 0.00 3.55
3433 3546 4.119136 CAATGTGTCCAAAGGTCCAAAAC 58.881 43.478 0.00 0.00 0.00 2.43
3476 3589 3.604875 TCATCGTGGGACTAAAACTCC 57.395 47.619 0.00 0.00 0.00 3.85
3488 3601 6.018751 CACTTAACCATAACTCATCATCGTGG 60.019 42.308 0.00 0.00 0.00 4.94
3490 3603 6.873997 TCACTTAACCATAACTCATCATCGT 58.126 36.000 0.00 0.00 0.00 3.73
3491 3604 6.074088 GCTCACTTAACCATAACTCATCATCG 60.074 42.308 0.00 0.00 0.00 3.84
3492 3605 6.763135 TGCTCACTTAACCATAACTCATCATC 59.237 38.462 0.00 0.00 0.00 2.92
3493 3606 6.653020 TGCTCACTTAACCATAACTCATCAT 58.347 36.000 0.00 0.00 0.00 2.45
3500 3613 7.857885 GCATATTCTTGCTCACTTAACCATAAC 59.142 37.037 0.00 0.00 39.57 1.89
3501 3614 7.013274 GGCATATTCTTGCTCACTTAACCATAA 59.987 37.037 0.00 0.00 42.38 1.90
3502 3615 6.486657 GGCATATTCTTGCTCACTTAACCATA 59.513 38.462 0.00 0.00 42.38 2.74
3503 3616 5.300286 GGCATATTCTTGCTCACTTAACCAT 59.700 40.000 0.00 0.00 42.38 3.55
3504 3617 4.640201 GGCATATTCTTGCTCACTTAACCA 59.360 41.667 0.00 0.00 42.38 3.67
3505 3618 4.640201 TGGCATATTCTTGCTCACTTAACC 59.360 41.667 0.00 0.00 42.38 2.85
3506 3619 5.818136 TGGCATATTCTTGCTCACTTAAC 57.182 39.130 0.00 0.00 42.38 2.01
3507 3620 6.039717 GGAATGGCATATTCTTGCTCACTTAA 59.960 38.462 0.00 0.00 42.38 1.85
3508 3621 5.532406 GGAATGGCATATTCTTGCTCACTTA 59.468 40.000 0.00 0.00 42.38 2.24
3512 3625 4.174704 AGGAATGGCATATTCTTGCTCA 57.825 40.909 0.00 0.00 42.38 4.26
3516 3629 5.450965 GGACACAAGGAATGGCATATTCTTG 60.451 44.000 23.58 23.58 0.00 3.02
3521 3634 3.053395 AGTGGACACAAGGAATGGCATAT 60.053 43.478 0.00 0.00 0.00 1.78
3528 3641 3.884037 AAAGGAGTGGACACAAGGAAT 57.116 42.857 5.14 0.00 0.00 3.01
3537 3650 3.522553 CCGTCTATGAAAAGGAGTGGAC 58.477 50.000 0.00 0.00 0.00 4.02
3538 3651 2.093658 GCCGTCTATGAAAAGGAGTGGA 60.094 50.000 0.00 0.00 0.00 4.02
3555 3668 1.549203 AAATCAAGAAGCATGGCCGT 58.451 45.000 0.00 0.00 0.00 5.68
3557 3670 4.929781 CTTCTAAATCAAGAAGCATGGCC 58.070 43.478 0.00 0.00 44.33 5.36
3565 3678 9.617523 TGTGCATGATATCTTCTAAATCAAGAA 57.382 29.630 3.98 0.00 33.57 2.52
3585 3698 1.640670 AGGTTATTGGGAGGTGTGCAT 59.359 47.619 0.00 0.00 0.00 3.96
3587 3700 1.271926 ACAGGTTATTGGGAGGTGTGC 60.272 52.381 0.00 0.00 0.00 4.57
3588 3701 2.039746 TCACAGGTTATTGGGAGGTGTG 59.960 50.000 0.00 0.00 36.08 3.82
3589 3702 2.344592 TCACAGGTTATTGGGAGGTGT 58.655 47.619 0.00 0.00 0.00 4.16
3602 3715 0.608640 GGAGGTCGTGATTCACAGGT 59.391 55.000 16.61 0.00 36.04 4.00
3633 3750 0.848942 CCTCTCATGTCGAAATCGCG 59.151 55.000 0.00 0.00 39.60 5.87
3687 3806 4.094146 GCTTCAAAGCCTAGCACTAGAAAG 59.906 45.833 6.25 2.33 46.20 2.62
3787 3906 1.526686 CGGATGCCAGCCTATGCAA 60.527 57.895 0.00 0.00 41.50 4.08
3788 3907 1.771783 ATCGGATGCCAGCCTATGCA 61.772 55.000 0.00 0.00 42.52 3.96
3789 3908 1.002868 ATCGGATGCCAGCCTATGC 60.003 57.895 0.00 0.00 37.95 3.14
3971 4098 8.167345 CGAGTTAAGCATAATATGATTGCTGAG 58.833 37.037 13.35 5.23 45.54 3.35
3975 4102 7.746475 GGAACGAGTTAAGCATAATATGATTGC 59.254 37.037 13.35 6.74 39.52 3.56
4011 4138 1.752694 AACAACTTGCCTGCACCGT 60.753 52.632 0.00 0.00 0.00 4.83
4012 4139 1.299316 CAACAACTTGCCTGCACCG 60.299 57.895 0.00 0.00 0.00 4.94
4099 4226 3.134804 TCTTCCGAATCCTTCCATCCTTC 59.865 47.826 0.00 0.00 0.00 3.46
4100 4227 3.115390 TCTTCCGAATCCTTCCATCCTT 58.885 45.455 0.00 0.00 0.00 3.36
4101 4228 2.764269 TCTTCCGAATCCTTCCATCCT 58.236 47.619 0.00 0.00 0.00 3.24
4103 4230 4.708177 TCAATCTTCCGAATCCTTCCATC 58.292 43.478 0.00 0.00 0.00 3.51
4104 4231 4.778213 TCAATCTTCCGAATCCTTCCAT 57.222 40.909 0.00 0.00 0.00 3.41
4105 4232 4.410228 AGATCAATCTTCCGAATCCTTCCA 59.590 41.667 0.00 0.00 31.97 3.53
4178 4308 1.035139 AAACAAAGCAGGTGCCAGAG 58.965 50.000 0.00 0.00 43.38 3.35
4179 4309 0.746063 CAAACAAAGCAGGTGCCAGA 59.254 50.000 0.00 0.00 43.38 3.86
4184 4314 0.032540 GGCTCCAAACAAAGCAGGTG 59.967 55.000 0.00 0.00 40.36 4.00
4185 4315 0.396974 TGGCTCCAAACAAAGCAGGT 60.397 50.000 0.00 0.00 40.36 4.00
4186 4316 0.316204 CTGGCTCCAAACAAAGCAGG 59.684 55.000 0.00 0.00 40.36 4.85
4187 4317 0.319297 GCTGGCTCCAAACAAAGCAG 60.319 55.000 0.00 0.00 40.36 4.24
4195 4325 3.565214 TGGACGGCTGGCTCCAAA 61.565 61.111 16.15 0.00 33.39 3.28
4360 4515 7.974243 ACAAAACAAAAACGTTCCTATACAC 57.026 32.000 0.00 0.00 0.00 2.90
4380 4535 5.163913 CGCAAAGAATGACCAACAAAACAAA 60.164 36.000 0.00 0.00 0.00 2.83
4381 4536 4.328440 CGCAAAGAATGACCAACAAAACAA 59.672 37.500 0.00 0.00 0.00 2.83
4382 4537 3.862267 CGCAAAGAATGACCAACAAAACA 59.138 39.130 0.00 0.00 0.00 2.83
4383 4538 3.862845 ACGCAAAGAATGACCAACAAAAC 59.137 39.130 0.00 0.00 0.00 2.43
4418 4577 2.148768 CCAGAACCCCGTTAGACAAAC 58.851 52.381 0.00 0.00 34.52 2.93
4439 4599 5.237344 CCATCCAAACGATATCTTCTTCACC 59.763 44.000 0.34 0.00 0.00 4.02
4449 4609 7.712204 AACTTTTAACCCATCCAAACGATAT 57.288 32.000 0.00 0.00 0.00 1.63
4451 4611 7.527568 TTAACTTTTAACCCATCCAAACGAT 57.472 32.000 0.00 0.00 0.00 3.73
4452 4612 6.956202 TTAACTTTTAACCCATCCAAACGA 57.044 33.333 0.00 0.00 0.00 3.85
4454 4614 8.822855 CACTTTTAACTTTTAACCCATCCAAAC 58.177 33.333 0.00 0.00 0.00 2.93
4488 4656 8.631797 TGTATAGTTGTACCAAAACCCTTTTTC 58.368 33.333 0.00 0.00 32.27 2.29
4626 4795 1.376037 GCACCAGGAGAAAGACGGG 60.376 63.158 0.00 0.00 0.00 5.28
4695 4865 2.525055 CTTTTGTCCGTTGTTGTGTGG 58.475 47.619 0.00 0.00 0.00 4.17
4703 4873 0.030638 CACCTGCCTTTTGTCCGTTG 59.969 55.000 0.00 0.00 0.00 4.10
4736 4906 7.459234 AGTTGGAGCAAGTACCTATAGTTTTT 58.541 34.615 0.00 0.00 0.00 1.94
4737 4907 7.017319 AGTTGGAGCAAGTACCTATAGTTTT 57.983 36.000 0.00 0.00 0.00 2.43
4740 4910 7.124052 TCTTAGTTGGAGCAAGTACCTATAGT 58.876 38.462 0.00 0.00 30.23 2.12
4741 4911 7.584122 TCTTAGTTGGAGCAAGTACCTATAG 57.416 40.000 0.00 0.00 30.23 1.31
4742 4912 7.584122 CTCTTAGTTGGAGCAAGTACCTATA 57.416 40.000 0.00 0.00 30.23 1.31
4765 4942 2.616510 GCCTCTAAACACTGTGGATGCT 60.617 50.000 13.09 0.00 0.00 3.79
4766 4943 1.740025 GCCTCTAAACACTGTGGATGC 59.260 52.381 13.09 4.75 0.00 3.91
4767 4944 3.057969 TGCCTCTAAACACTGTGGATG 57.942 47.619 13.09 0.00 0.00 3.51
4768 4945 3.073062 ACTTGCCTCTAAACACTGTGGAT 59.927 43.478 13.09 2.85 0.00 3.41
4769 4946 2.438021 ACTTGCCTCTAAACACTGTGGA 59.562 45.455 13.09 0.00 0.00 4.02
4770 4947 2.851195 ACTTGCCTCTAAACACTGTGG 58.149 47.619 13.09 0.00 0.00 4.17
4771 4948 4.601019 CAAACTTGCCTCTAAACACTGTG 58.399 43.478 6.19 6.19 0.00 3.66
4772 4949 4.900635 CAAACTTGCCTCTAAACACTGT 57.099 40.909 0.00 0.00 0.00 3.55
4786 4963 3.319122 AGCTTGGTTTAGAGGCAAACTTG 59.681 43.478 0.00 0.00 38.27 3.16
4787 4964 3.319122 CAGCTTGGTTTAGAGGCAAACTT 59.681 43.478 0.00 0.00 38.27 2.66
4788 4965 2.887152 CAGCTTGGTTTAGAGGCAAACT 59.113 45.455 0.00 0.00 38.27 2.66
4789 4966 2.029918 CCAGCTTGGTTTAGAGGCAAAC 60.030 50.000 0.00 0.00 37.62 2.93
4790 4967 2.238521 CCAGCTTGGTTTAGAGGCAAA 58.761 47.619 0.00 0.00 31.35 3.68
4791 4968 1.547675 CCCAGCTTGGTTTAGAGGCAA 60.548 52.381 0.00 0.00 35.17 4.52
4792 4969 0.038166 CCCAGCTTGGTTTAGAGGCA 59.962 55.000 0.00 0.00 35.17 4.75
4793 4970 0.328258 TCCCAGCTTGGTTTAGAGGC 59.672 55.000 3.35 0.00 35.17 4.70
4794 4971 1.340114 GGTCCCAGCTTGGTTTAGAGG 60.340 57.143 3.35 0.00 35.17 3.69
4795 4972 1.340114 GGGTCCCAGCTTGGTTTAGAG 60.340 57.143 1.78 0.00 35.17 2.43
4796 4973 0.696501 GGGTCCCAGCTTGGTTTAGA 59.303 55.000 1.78 0.00 35.17 2.10
4797 4974 0.676782 CGGGTCCCAGCTTGGTTTAG 60.677 60.000 9.12 0.00 35.17 1.85
4798 4975 1.377229 CGGGTCCCAGCTTGGTTTA 59.623 57.895 9.12 0.00 35.17 2.01
4799 4976 2.115266 CGGGTCCCAGCTTGGTTT 59.885 61.111 9.12 0.00 35.17 3.27
4800 4977 4.660938 GCGGGTCCCAGCTTGGTT 62.661 66.667 9.12 0.00 35.17 3.67
4803 4980 3.551496 TTCAGCGGGTCCCAGCTTG 62.551 63.158 20.46 16.22 42.52 4.01
4804 4981 3.249189 TTCAGCGGGTCCCAGCTT 61.249 61.111 20.46 7.42 42.52 3.74
4805 4982 4.021925 GTTCAGCGGGTCCCAGCT 62.022 66.667 18.17 18.17 45.74 4.24
4806 4983 4.021925 AGTTCAGCGGGTCCCAGC 62.022 66.667 9.12 12.43 0.00 4.85
4807 4984 2.046892 CAGTTCAGCGGGTCCCAG 60.047 66.667 9.12 1.83 0.00 4.45
4808 4985 4.329545 GCAGTTCAGCGGGTCCCA 62.330 66.667 9.12 0.00 0.00 4.37
4810 4987 3.959991 GAGGCAGTTCAGCGGGTCC 62.960 68.421 0.00 0.00 34.64 4.46
4811 4988 1.605058 TAGAGGCAGTTCAGCGGGTC 61.605 60.000 0.00 0.00 34.64 4.46
4812 4989 1.192146 TTAGAGGCAGTTCAGCGGGT 61.192 55.000 0.00 0.00 34.64 5.28
4813 4990 0.460987 CTTAGAGGCAGTTCAGCGGG 60.461 60.000 0.00 0.00 34.64 6.13
4814 4991 1.086634 GCTTAGAGGCAGTTCAGCGG 61.087 60.000 0.00 0.00 34.64 5.52
4815 4992 0.108424 AGCTTAGAGGCAGTTCAGCG 60.108 55.000 0.00 0.00 34.64 5.18
4816 4993 2.106477 AAGCTTAGAGGCAGTTCAGC 57.894 50.000 0.00 0.00 34.17 4.26
4817 4994 4.727507 TCTAAGCTTAGAGGCAGTTCAG 57.272 45.455 28.47 5.19 34.99 3.02
4818 4995 4.711846 TCATCTAAGCTTAGAGGCAGTTCA 59.288 41.667 33.11 18.34 42.55 3.18
4819 4996 5.269505 TCATCTAAGCTTAGAGGCAGTTC 57.730 43.478 33.11 0.00 42.55 3.01
4820 4997 5.683876 TTCATCTAAGCTTAGAGGCAGTT 57.316 39.130 33.11 18.16 42.55 3.16
4821 4998 5.609423 CATTCATCTAAGCTTAGAGGCAGT 58.391 41.667 33.11 21.72 42.55 4.40
4822 4999 4.451774 GCATTCATCTAAGCTTAGAGGCAG 59.548 45.833 33.11 25.97 42.55 4.85
4823 5000 4.102210 AGCATTCATCTAAGCTTAGAGGCA 59.898 41.667 33.11 26.90 42.55 4.75
4824 5001 4.640364 AGCATTCATCTAAGCTTAGAGGC 58.360 43.478 33.11 28.15 42.55 4.70
4825 5002 6.783892 GAAGCATTCATCTAAGCTTAGAGG 57.216 41.667 32.47 32.47 46.35 3.69
4866 5043 8.994170 GCTCTGGGTCTAGCTTAAAAATTATAG 58.006 37.037 0.00 0.00 35.80 1.31
4867 5044 8.714906 AGCTCTGGGTCTAGCTTAAAAATTATA 58.285 33.333 0.00 0.00 46.82 0.98
4868 5045 7.500559 CAGCTCTGGGTCTAGCTTAAAAATTAT 59.499 37.037 0.00 0.00 46.82 1.28
4869 5046 6.823689 CAGCTCTGGGTCTAGCTTAAAAATTA 59.176 38.462 0.00 0.00 46.82 1.40
4870 5047 5.649831 CAGCTCTGGGTCTAGCTTAAAAATT 59.350 40.000 0.00 0.00 46.82 1.82
4871 5048 5.045578 TCAGCTCTGGGTCTAGCTTAAAAAT 60.046 40.000 0.00 0.00 46.82 1.82
4872 5049 4.286032 TCAGCTCTGGGTCTAGCTTAAAAA 59.714 41.667 0.00 0.00 46.82 1.94
4873 5050 3.838317 TCAGCTCTGGGTCTAGCTTAAAA 59.162 43.478 0.00 0.00 46.82 1.52
4874 5051 3.441101 TCAGCTCTGGGTCTAGCTTAAA 58.559 45.455 0.00 0.00 46.82 1.52
4875 5052 3.101643 TCAGCTCTGGGTCTAGCTTAA 57.898 47.619 0.00 0.00 46.82 1.85
4876 5053 2.828661 TCAGCTCTGGGTCTAGCTTA 57.171 50.000 0.00 0.00 46.82 3.09
4877 5054 1.944177 TTCAGCTCTGGGTCTAGCTT 58.056 50.000 0.00 0.00 46.82 3.74
4879 5056 4.408182 TTTATTCAGCTCTGGGTCTAGC 57.592 45.455 0.00 0.00 39.08 3.42
4880 5057 5.582665 GTGTTTTATTCAGCTCTGGGTCTAG 59.417 44.000 0.00 0.00 0.00 2.43
4881 5058 5.012664 TGTGTTTTATTCAGCTCTGGGTCTA 59.987 40.000 0.00 0.00 0.00 2.59
4882 5059 4.202461 TGTGTTTTATTCAGCTCTGGGTCT 60.202 41.667 0.00 0.00 0.00 3.85
4883 5060 4.072131 TGTGTTTTATTCAGCTCTGGGTC 58.928 43.478 0.00 0.00 0.00 4.46
4884 5061 4.074970 CTGTGTTTTATTCAGCTCTGGGT 58.925 43.478 0.00 0.00 0.00 4.51
4885 5062 4.074970 ACTGTGTTTTATTCAGCTCTGGG 58.925 43.478 0.00 0.00 33.12 4.45
4886 5063 4.516698 ACACTGTGTTTTATTCAGCTCTGG 59.483 41.667 7.80 0.00 33.12 3.86
4887 5064 5.679734 ACACTGTGTTTTATTCAGCTCTG 57.320 39.130 7.80 0.00 33.12 3.35
4899 5076 8.369758 GCTGGTTGCTATAAAAACACTGTGTTT 61.370 37.037 28.10 28.10 44.38 2.83
4900 5077 6.458232 TGGTTGCTATAAAAACACTGTGTT 57.542 33.333 19.85 19.85 43.41 3.32
4901 5078 5.507315 GCTGGTTGCTATAAAAACACTGTGT 60.507 40.000 7.80 7.80 38.95 3.72
4902 5079 4.917415 GCTGGTTGCTATAAAAACACTGTG 59.083 41.667 6.19 6.19 38.95 3.66
4903 5080 4.022329 GGCTGGTTGCTATAAAAACACTGT 60.022 41.667 0.00 0.00 42.39 3.55
4904 5081 4.485163 GGCTGGTTGCTATAAAAACACTG 58.515 43.478 0.00 0.00 42.39 3.66
4905 5082 3.509967 GGGCTGGTTGCTATAAAAACACT 59.490 43.478 0.00 0.00 42.39 3.55
4906 5083 3.257127 TGGGCTGGTTGCTATAAAAACAC 59.743 43.478 0.00 0.00 42.39 3.32
4907 5084 3.501349 TGGGCTGGTTGCTATAAAAACA 58.499 40.909 0.00 0.00 42.39 2.83
4908 5085 4.402474 AGATGGGCTGGTTGCTATAAAAAC 59.598 41.667 0.00 0.00 42.39 2.43
4909 5086 4.609301 AGATGGGCTGGTTGCTATAAAAA 58.391 39.130 0.00 0.00 42.39 1.94
4910 5087 4.249638 AGATGGGCTGGTTGCTATAAAA 57.750 40.909 0.00 0.00 42.39 1.52
4911 5088 3.951563 AGATGGGCTGGTTGCTATAAA 57.048 42.857 0.00 0.00 42.39 1.40
4912 5089 5.514834 GGAATAGATGGGCTGGTTGCTATAA 60.515 44.000 0.00 0.00 42.39 0.98
4913 5090 4.019321 GGAATAGATGGGCTGGTTGCTATA 60.019 45.833 0.00 0.00 42.39 1.31
4914 5091 3.245052 GGAATAGATGGGCTGGTTGCTAT 60.245 47.826 0.00 0.00 42.39 2.97
4915 5092 2.106511 GGAATAGATGGGCTGGTTGCTA 59.893 50.000 0.00 0.00 42.39 3.49
4916 5093 1.133668 GGAATAGATGGGCTGGTTGCT 60.134 52.381 0.00 0.00 42.39 3.91
4917 5094 1.133668 AGGAATAGATGGGCTGGTTGC 60.134 52.381 0.00 0.00 41.94 4.17
4918 5095 4.042062 TCATAGGAATAGATGGGCTGGTTG 59.958 45.833 0.00 0.00 0.00 3.77
4919 5096 4.042187 GTCATAGGAATAGATGGGCTGGTT 59.958 45.833 0.00 0.00 0.00 3.67
4920 5097 3.584848 GTCATAGGAATAGATGGGCTGGT 59.415 47.826 0.00 0.00 0.00 4.00
4921 5098 3.843027 AGTCATAGGAATAGATGGGCTGG 59.157 47.826 0.00 0.00 0.00 4.85
4922 5099 4.323333 CCAGTCATAGGAATAGATGGGCTG 60.323 50.000 0.00 0.00 0.00 4.85
4923 5100 3.843027 CCAGTCATAGGAATAGATGGGCT 59.157 47.826 0.00 0.00 0.00 5.19
4924 5101 3.620966 GCCAGTCATAGGAATAGATGGGC 60.621 52.174 0.00 0.00 0.00 5.36
4925 5102 3.584406 TGCCAGTCATAGGAATAGATGGG 59.416 47.826 0.00 0.00 0.00 4.00
4926 5103 4.897509 TGCCAGTCATAGGAATAGATGG 57.102 45.455 0.00 0.00 0.00 3.51
4927 5104 5.862845 ACTTGCCAGTCATAGGAATAGATG 58.137 41.667 0.00 0.00 0.00 2.90
4928 5105 6.294787 CGTACTTGCCAGTCATAGGAATAGAT 60.295 42.308 0.00 0.00 34.06 1.98
4929 5106 5.009710 CGTACTTGCCAGTCATAGGAATAGA 59.990 44.000 0.00 0.00 34.06 1.98
4930 5107 5.221263 ACGTACTTGCCAGTCATAGGAATAG 60.221 44.000 0.00 0.00 34.06 1.73
4931 5108 4.647853 ACGTACTTGCCAGTCATAGGAATA 59.352 41.667 0.00 0.00 34.06 1.75
4932 5109 3.451178 ACGTACTTGCCAGTCATAGGAAT 59.549 43.478 0.00 0.00 34.06 3.01
4933 5110 2.829720 ACGTACTTGCCAGTCATAGGAA 59.170 45.455 0.00 0.00 34.06 3.36
4934 5111 2.453521 ACGTACTTGCCAGTCATAGGA 58.546 47.619 0.00 0.00 34.06 2.94
4935 5112 2.961526 ACGTACTTGCCAGTCATAGG 57.038 50.000 0.00 0.00 34.06 2.57
4936 5113 4.634184 ACTACGTACTTGCCAGTCATAG 57.366 45.455 0.00 0.00 34.06 2.23
4937 5114 4.577693 CCTACTACGTACTTGCCAGTCATA 59.422 45.833 0.00 0.00 34.06 2.15
4938 5115 3.380637 CCTACTACGTACTTGCCAGTCAT 59.619 47.826 0.00 0.00 34.06 3.06
4939 5116 2.751259 CCTACTACGTACTTGCCAGTCA 59.249 50.000 0.00 0.00 34.06 3.41
4940 5117 2.098770 CCCTACTACGTACTTGCCAGTC 59.901 54.545 0.00 0.00 34.06 3.51
4941 5118 2.097825 CCCTACTACGTACTTGCCAGT 58.902 52.381 0.00 0.00 36.99 4.00
4942 5119 2.098770 GTCCCTACTACGTACTTGCCAG 59.901 54.545 0.00 0.00 0.00 4.85
4943 5120 2.094675 GTCCCTACTACGTACTTGCCA 58.905 52.381 0.00 0.00 0.00 4.92
4944 5121 2.094675 TGTCCCTACTACGTACTTGCC 58.905 52.381 0.00 0.00 0.00 4.52
4945 5122 2.159324 GGTGTCCCTACTACGTACTTGC 60.159 54.545 0.00 0.00 0.00 4.01
4946 5123 3.128242 CAGGTGTCCCTACTACGTACTTG 59.872 52.174 0.00 0.00 39.89 3.16
4947 5124 3.009473 TCAGGTGTCCCTACTACGTACTT 59.991 47.826 0.00 0.00 39.89 2.24
4948 5125 2.573462 TCAGGTGTCCCTACTACGTACT 59.427 50.000 0.00 0.00 39.89 2.73
4949 5126 2.991250 TCAGGTGTCCCTACTACGTAC 58.009 52.381 0.00 0.00 39.89 3.67
4950 5127 3.719268 TTCAGGTGTCCCTACTACGTA 57.281 47.619 0.00 0.00 39.89 3.57
4951 5128 2.592102 TTCAGGTGTCCCTACTACGT 57.408 50.000 0.00 0.00 39.89 3.57
4952 5129 2.758979 ACATTCAGGTGTCCCTACTACG 59.241 50.000 0.00 0.00 39.89 3.51
4953 5130 4.124851 CACATTCAGGTGTCCCTACTAC 57.875 50.000 0.00 0.00 39.89 2.73
4967 5144 4.081198 ACTTTGGGCTGAAAAACACATTCA 60.081 37.500 0.00 0.00 35.60 2.57
4968 5145 4.270808 CACTTTGGGCTGAAAAACACATTC 59.729 41.667 0.00 0.00 0.00 2.67
4969 5146 4.190772 CACTTTGGGCTGAAAAACACATT 58.809 39.130 0.00 0.00 0.00 2.71
4970 5147 3.197549 ACACTTTGGGCTGAAAAACACAT 59.802 39.130 0.00 0.00 0.00 3.21
4971 5148 2.564947 ACACTTTGGGCTGAAAAACACA 59.435 40.909 0.00 0.00 0.00 3.72
4972 5149 3.245518 ACACTTTGGGCTGAAAAACAC 57.754 42.857 0.00 0.00 0.00 3.32
4973 5150 3.594134 CAACACTTTGGGCTGAAAAACA 58.406 40.909 0.00 0.00 0.00 2.83
4985 5162 1.512926 CGTCCCTCTCCAACACTTTG 58.487 55.000 0.00 0.00 0.00 2.77
4986 5163 0.250338 GCGTCCCTCTCCAACACTTT 60.250 55.000 0.00 0.00 0.00 2.66
4987 5164 1.122019 AGCGTCCCTCTCCAACACTT 61.122 55.000 0.00 0.00 0.00 3.16
4988 5165 0.251653 TAGCGTCCCTCTCCAACACT 60.252 55.000 0.00 0.00 0.00 3.55
4989 5166 0.606604 TTAGCGTCCCTCTCCAACAC 59.393 55.000 0.00 0.00 0.00 3.32
4990 5167 0.895530 CTTAGCGTCCCTCTCCAACA 59.104 55.000 0.00 0.00 0.00 3.33
4991 5168 1.183549 TCTTAGCGTCCCTCTCCAAC 58.816 55.000 0.00 0.00 0.00 3.77
4992 5169 2.160721 ATCTTAGCGTCCCTCTCCAA 57.839 50.000 0.00 0.00 0.00 3.53
4993 5170 2.160721 AATCTTAGCGTCCCTCTCCA 57.839 50.000 0.00 0.00 0.00 3.86
4994 5171 3.488363 TCTAATCTTAGCGTCCCTCTCC 58.512 50.000 0.00 0.00 0.00 3.71
4995 5172 4.617298 GCATCTAATCTTAGCGTCCCTCTC 60.617 50.000 0.00 0.00 0.00 3.20
4996 5173 3.257127 GCATCTAATCTTAGCGTCCCTCT 59.743 47.826 0.00 0.00 0.00 3.69
4997 5174 3.005897 TGCATCTAATCTTAGCGTCCCTC 59.994 47.826 0.00 0.00 0.00 4.30
4998 5175 2.965831 TGCATCTAATCTTAGCGTCCCT 59.034 45.455 0.00 0.00 0.00 4.20
4999 5176 3.386768 TGCATCTAATCTTAGCGTCCC 57.613 47.619 0.00 0.00 0.00 4.46
5000 5177 4.815269 AGATGCATCTAATCTTAGCGTCC 58.185 43.478 27.73 0.00 41.01 4.79
5001 5178 5.708948 AGAGATGCATCTAATCTTAGCGTC 58.291 41.667 28.78 12.03 40.55 5.19
5002 5179 5.720371 AGAGATGCATCTAATCTTAGCGT 57.280 39.130 28.78 2.58 37.25 5.07
5003 5180 7.275341 CCTTAAGAGATGCATCTAATCTTAGCG 59.725 40.741 28.78 21.31 37.25 4.26
5004 5181 8.310382 TCCTTAAGAGATGCATCTAATCTTAGC 58.690 37.037 28.78 13.74 37.25 3.09
5011 5188 8.408601 GCAAAAATCCTTAAGAGATGCATCTAA 58.591 33.333 28.78 18.13 37.25 2.10
5012 5189 7.776969 AGCAAAAATCCTTAAGAGATGCATCTA 59.223 33.333 28.78 11.45 37.25 1.98
5013 5190 6.606395 AGCAAAAATCCTTAAGAGATGCATCT 59.394 34.615 29.09 29.09 40.50 2.90
5014 5191 6.803642 AGCAAAAATCCTTAAGAGATGCATC 58.196 36.000 19.37 19.37 33.89 3.91
5015 5192 6.786967 AGCAAAAATCCTTAAGAGATGCAT 57.213 33.333 0.00 0.00 33.89 3.96
5016 5193 6.594788 AAGCAAAAATCCTTAAGAGATGCA 57.405 33.333 3.36 0.00 33.89 3.96
5017 5194 7.989826 TCTAAGCAAAAATCCTTAAGAGATGC 58.010 34.615 3.36 6.60 0.00 3.91
5018 5195 9.388506 TCTCTAAGCAAAAATCCTTAAGAGATG 57.611 33.333 3.36 0.00 31.14 2.90
5019 5196 9.389755 GTCTCTAAGCAAAAATCCTTAAGAGAT 57.610 33.333 3.36 2.41 34.41 2.75
5020 5197 8.598041 AGTCTCTAAGCAAAAATCCTTAAGAGA 58.402 33.333 3.36 0.00 32.23 3.10
5021 5198 8.663911 CAGTCTCTAAGCAAAAATCCTTAAGAG 58.336 37.037 3.36 0.00 0.00 2.85
5022 5199 8.375506 TCAGTCTCTAAGCAAAAATCCTTAAGA 58.624 33.333 3.36 0.00 0.00 2.10
5023 5200 8.553459 TCAGTCTCTAAGCAAAAATCCTTAAG 57.447 34.615 0.00 0.00 0.00 1.85
5024 5201 7.607991 CCTCAGTCTCTAAGCAAAAATCCTTAA 59.392 37.037 0.00 0.00 0.00 1.85
5025 5202 7.106239 CCTCAGTCTCTAAGCAAAAATCCTTA 58.894 38.462 0.00 0.00 0.00 2.69
5026 5203 5.942826 CCTCAGTCTCTAAGCAAAAATCCTT 59.057 40.000 0.00 0.00 0.00 3.36
5027 5204 5.013599 ACCTCAGTCTCTAAGCAAAAATCCT 59.986 40.000 0.00 0.00 0.00 3.24
5028 5205 5.123027 CACCTCAGTCTCTAAGCAAAAATCC 59.877 44.000 0.00 0.00 0.00 3.01
5029 5206 5.391416 GCACCTCAGTCTCTAAGCAAAAATC 60.391 44.000 0.00 0.00 0.00 2.17
5030 5207 4.457257 GCACCTCAGTCTCTAAGCAAAAAT 59.543 41.667 0.00 0.00 0.00 1.82
5031 5208 3.815401 GCACCTCAGTCTCTAAGCAAAAA 59.185 43.478 0.00 0.00 0.00 1.94
5032 5209 3.403038 GCACCTCAGTCTCTAAGCAAAA 58.597 45.455 0.00 0.00 0.00 2.44
5033 5210 2.610479 CGCACCTCAGTCTCTAAGCAAA 60.610 50.000 0.00 0.00 0.00 3.68
5034 5211 1.067565 CGCACCTCAGTCTCTAAGCAA 60.068 52.381 0.00 0.00 0.00 3.91
5035 5212 0.528017 CGCACCTCAGTCTCTAAGCA 59.472 55.000 0.00 0.00 0.00 3.91
5036 5213 0.804156 GCGCACCTCAGTCTCTAAGC 60.804 60.000 0.30 0.00 0.00 3.09
5037 5214 0.528017 TGCGCACCTCAGTCTCTAAG 59.472 55.000 5.66 0.00 0.00 2.18
5038 5215 0.528017 CTGCGCACCTCAGTCTCTAA 59.472 55.000 5.66 0.00 0.00 2.10
5039 5216 0.609406 ACTGCGCACCTCAGTCTCTA 60.609 55.000 5.66 0.00 40.47 2.43
5040 5217 1.905843 ACTGCGCACCTCAGTCTCT 60.906 57.895 5.66 0.00 40.47 3.10
5041 5218 1.735920 CACTGCGCACCTCAGTCTC 60.736 63.158 5.66 0.00 42.38 3.36
5042 5219 1.179174 TACACTGCGCACCTCAGTCT 61.179 55.000 5.66 0.00 42.38 3.24
5043 5220 0.108615 ATACACTGCGCACCTCAGTC 60.109 55.000 5.66 0.00 42.38 3.51
5044 5221 1.135139 CTATACACTGCGCACCTCAGT 59.865 52.381 5.66 0.00 44.87 3.41
5045 5222 1.405463 TCTATACACTGCGCACCTCAG 59.595 52.381 5.66 0.00 37.56 3.35
5046 5223 1.405463 CTCTATACACTGCGCACCTCA 59.595 52.381 5.66 0.00 0.00 3.86
5047 5224 1.269309 CCTCTATACACTGCGCACCTC 60.269 57.143 5.66 0.00 0.00 3.85
5048 5225 0.747255 CCTCTATACACTGCGCACCT 59.253 55.000 5.66 0.00 0.00 4.00
5049 5226 0.876342 GCCTCTATACACTGCGCACC 60.876 60.000 5.66 0.00 0.00 5.01
5050 5227 0.179111 TGCCTCTATACACTGCGCAC 60.179 55.000 5.66 0.00 0.00 5.34
5051 5228 0.103026 CTGCCTCTATACACTGCGCA 59.897 55.000 10.98 10.98 0.00 6.09
5052 5229 1.218230 GCTGCCTCTATACACTGCGC 61.218 60.000 0.00 0.00 0.00 6.09
5053 5230 0.598680 GGCTGCCTCTATACACTGCG 60.599 60.000 12.43 0.00 0.00 5.18
5054 5231 0.755686 AGGCTGCCTCTATACACTGC 59.244 55.000 17.22 0.00 0.00 4.40
5055 5232 2.810439 GAGGCTGCCTCTATACACTG 57.190 55.000 35.51 0.00 46.41 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.