Multiple sequence alignment - TraesCS5A01G426400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G426400 chr5A 100.000 9406 0 0 1 9406 611553607 611563012 0.000000e+00 17370.0
1 TraesCS5A01G426400 chr5A 94.068 118 7 0 207 324 58490215 58490098 7.500000e-41 180.0
2 TraesCS5A01G426400 chr5A 94.068 118 7 0 207 324 66958728 66958611 7.500000e-41 180.0
3 TraesCS5A01G426400 chr5D 95.706 7173 235 42 2260 9406 489897230 489904355 0.000000e+00 11472.0
4 TraesCS5A01G426400 chr5D 85.052 970 69 33 1328 2267 489896271 489897194 0.000000e+00 918.0
5 TraesCS5A01G426400 chr5D 85.928 668 33 23 388 1013 489895612 489896260 0.000000e+00 656.0
6 TraesCS5A01G426400 chr5D 94.915 118 6 0 207 324 450851355 450851472 1.610000e-42 185.0
7 TraesCS5A01G426400 chr5D 93.220 118 8 0 207 324 86696906 86696789 3.490000e-39 174.0
8 TraesCS5A01G426400 chr5B 94.346 3785 127 52 5664 9406 604059922 604063661 0.000000e+00 5723.0
9 TraesCS5A01G426400 chr5B 95.444 3512 133 19 2260 5761 604056424 604059918 0.000000e+00 5574.0
10 TraesCS5A01G426400 chr5B 90.413 1137 62 26 1156 2267 604055274 604056388 0.000000e+00 1452.0
11 TraesCS5A01G426400 chr5B 82.587 402 29 17 423 803 604054392 604054773 5.480000e-82 316.0
12 TraesCS5A01G426400 chr3D 94.915 118 6 0 207 324 292031049 292030932 1.610000e-42 185.0
13 TraesCS5A01G426400 chr3D 76.453 344 55 16 3525 3855 604716670 604717000 7.560000e-36 163.0
14 TraesCS5A01G426400 chr3D 88.000 75 9 0 3501 3575 604723975 604724049 1.300000e-13 89.8
15 TraesCS5A01G426400 chr6A 93.220 118 8 0 207 324 535726062 535725945 3.490000e-39 174.0
16 TraesCS5A01G426400 chr4A 93.220 118 8 0 207 324 252243739 252243856 3.490000e-39 174.0
17 TraesCS5A01G426400 chr4A 93.220 118 8 0 207 324 276040418 276040535 3.490000e-39 174.0
18 TraesCS5A01G426400 chr4A 93.220 118 8 0 207 324 384826100 384826217 3.490000e-39 174.0
19 TraesCS5A01G426400 chrUn 89.831 118 12 0 207 324 20846277 20846160 1.640000e-32 152.0
20 TraesCS5A01G426400 chrUn 85.926 135 18 1 3502 3635 335984390 335984256 9.850000e-30 143.0
21 TraesCS5A01G426400 chrUn 85.926 135 18 1 3502 3635 360215308 360215174 9.850000e-30 143.0
22 TraesCS5A01G426400 chrUn 85.926 135 18 1 3502 3635 470692099 470691965 9.850000e-30 143.0
23 TraesCS5A01G426400 chrUn 80.795 151 27 2 1 150 70145504 70145653 5.970000e-22 117.0
24 TraesCS5A01G426400 chrUn 93.478 46 1 2 2264 2309 399203682 399203639 6.100000e-07 67.6
25 TraesCS5A01G426400 chr6B 83.333 114 14 4 3 113 471235718 471235829 6.010000e-17 100.0
26 TraesCS5A01G426400 chr6B 95.238 42 1 1 2262 2303 205092300 205092260 2.190000e-06 65.8
27 TraesCS5A01G426400 chr6D 91.667 60 4 1 2252 2311 345247327 345247385 2.180000e-11 82.4
28 TraesCS5A01G426400 chr6D 90.385 52 4 1 344 394 28645380 28645329 6.100000e-07 67.6
29 TraesCS5A01G426400 chr6D 89.796 49 5 0 2264 2312 469612242 469612194 7.890000e-06 63.9
30 TraesCS5A01G426400 chr1D 91.837 49 4 0 345 393 457538926 457538974 1.690000e-07 69.4
31 TraesCS5A01G426400 chr1D 92.000 50 1 3 343 390 452344680 452344728 6.100000e-07 67.6
32 TraesCS5A01G426400 chr1B 95.455 44 1 1 2264 2307 453512629 453512587 1.690000e-07 69.4
33 TraesCS5A01G426400 chr1A 93.617 47 1 2 346 391 535073930 535073975 1.690000e-07 69.4
34 TraesCS5A01G426400 chr7B 93.478 46 1 2 2264 2309 658512543 658512500 6.100000e-07 67.6
35 TraesCS5A01G426400 chr3B 91.837 49 2 2 345 392 251650561 251650514 6.100000e-07 67.6
36 TraesCS5A01G426400 chr4D 86.885 61 4 3 349 406 400203607 400203548 2.190000e-06 65.8
37 TraesCS5A01G426400 chr7D 86.667 60 4 4 344 402 4181485 4181541 7.890000e-06 63.9
38 TraesCS5A01G426400 chr2B 86.885 61 3 4 345 403 728089749 728089806 7.890000e-06 63.9
39 TraesCS5A01G426400 chr3A 89.583 48 5 0 2264 2311 479130464 479130417 2.840000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G426400 chr5A 611553607 611563012 9405 False 17370.000000 17370 100.000000 1 9406 1 chr5A.!!$F1 9405
1 TraesCS5A01G426400 chr5D 489895612 489904355 8743 False 4348.666667 11472 88.895333 388 9406 3 chr5D.!!$F2 9018
2 TraesCS5A01G426400 chr5B 604054392 604063661 9269 False 3266.250000 5723 90.697500 423 9406 4 chr5B.!!$F1 8983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.384669 CGATGTACTCCCTCCGTTCC 59.615 60.000 0.00 0.00 0.00 3.62 F
508 515 1.082756 CGTTTGGACTGCACGCTTC 60.083 57.895 0.00 0.00 0.00 3.86 F
1439 1621 0.036294 GCTAGGGTTTCGGTCTGCTT 60.036 55.000 0.00 0.00 0.00 3.91 F
1531 1714 0.036483 TGCTATTGCTGGCACGAAGA 60.036 50.000 0.00 0.00 40.48 2.87 F
2637 2899 0.686789 TAGAGCCTGCTTTGTCTGCA 59.313 50.000 0.00 0.00 38.81 4.41 F
3477 3743 1.238439 CGGAATCAAGCAACACTGGT 58.762 50.000 0.00 0.00 33.72 4.00 F
4676 4943 0.752658 AAAAGGCAAACAGTCTGGGC 59.247 50.000 4.53 4.92 28.17 5.36 F
6132 6504 0.116342 TGCCCTACTCTCTGGGAACA 59.884 55.000 1.75 0.00 46.15 3.18 F
7296 7670 0.179073 CCCGATTGTGGCTAGTGGAG 60.179 60.000 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1530 0.105039 CGAATCTCGGGAGGGGAAAG 59.895 60.000 0.0 0.0 36.00 2.62 R
1777 1983 0.178861 AGACCACACTCCCCTCCAAT 60.179 55.000 0.0 0.0 0.00 3.16 R
3184 3447 0.462375 ACGGGCAAAACAAGGAAACC 59.538 50.000 0.0 0.0 0.00 3.27 R
3495 3761 0.819259 GCTCCTGAACAAGTGGTGCA 60.819 55.000 0.0 0.0 39.36 4.57 R
4456 4723 0.038166 GATGGGGTGAACTGCCTTCA 59.962 55.000 0.0 0.0 36.46 3.02 R
4691 4958 1.207811 CATGGATTGCCTTGGTTTCCC 59.792 52.381 0.0 0.0 36.08 3.97 R
6453 6827 0.041684 CCTTCCCTTCCATTGCCCTT 59.958 55.000 0.0 0.0 0.00 3.95 R
7593 7970 0.835941 CCAGGTCCAGATGAGGAAGG 59.164 60.000 0.0 0.0 39.92 3.46 R
9203 9603 0.108662 CCGATTGCTGCCTTTTTCCC 60.109 55.000 0.0 0.0 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.757850 AACCAAGTCTCAATCAAAGTGAC 57.242 39.130 0.00 0.00 0.00 3.67
25 26 4.780815 ACCAAGTCTCAATCAAAGTGACA 58.219 39.130 0.00 0.00 33.27 3.58
26 27 5.380043 ACCAAGTCTCAATCAAAGTGACAT 58.620 37.500 0.00 0.00 33.27 3.06
27 28 6.533730 ACCAAGTCTCAATCAAAGTGACATA 58.466 36.000 0.00 0.00 33.27 2.29
28 29 6.998074 ACCAAGTCTCAATCAAAGTGACATAA 59.002 34.615 0.00 0.00 33.27 1.90
29 30 7.667219 ACCAAGTCTCAATCAAAGTGACATAAT 59.333 33.333 0.00 0.00 33.27 1.28
30 31 9.166173 CCAAGTCTCAATCAAAGTGACATAATA 57.834 33.333 0.00 0.00 33.27 0.98
58 59 7.827819 AAGAAGGAAAAAGAAAACGAAAAGG 57.172 32.000 0.00 0.00 0.00 3.11
59 60 7.165460 AGAAGGAAAAAGAAAACGAAAAGGA 57.835 32.000 0.00 0.00 0.00 3.36
60 61 7.033791 AGAAGGAAAAAGAAAACGAAAAGGAC 58.966 34.615 0.00 0.00 0.00 3.85
61 62 6.275494 AGGAAAAAGAAAACGAAAAGGACA 57.725 33.333 0.00 0.00 0.00 4.02
62 63 6.873997 AGGAAAAAGAAAACGAAAAGGACAT 58.126 32.000 0.00 0.00 0.00 3.06
63 64 7.327975 AGGAAAAAGAAAACGAAAAGGACATT 58.672 30.769 0.00 0.00 0.00 2.71
64 65 7.822334 AGGAAAAAGAAAACGAAAAGGACATTT 59.178 29.630 0.00 0.00 0.00 2.32
65 66 8.447833 GGAAAAAGAAAACGAAAAGGACATTTT 58.552 29.630 0.00 0.00 43.88 1.82
66 67 9.820229 GAAAAAGAAAACGAAAAGGACATTTTT 57.180 25.926 0.00 0.00 41.24 1.94
83 84 3.574284 TTTTTGCACGGATCTTCATGG 57.426 42.857 0.00 0.00 0.00 3.66
84 85 2.488204 TTTGCACGGATCTTCATGGA 57.512 45.000 0.00 0.00 0.00 3.41
85 86 2.488204 TTGCACGGATCTTCATGGAA 57.512 45.000 0.00 0.00 0.00 3.53
86 87 2.028420 TGCACGGATCTTCATGGAAG 57.972 50.000 0.00 0.00 40.65 3.46
101 102 9.481340 TCTTCATGGAAGATCAAACGAATATAG 57.519 33.333 4.64 0.00 42.78 1.31
102 103 9.265901 CTTCATGGAAGATCAAACGAATATAGT 57.734 33.333 0.00 0.00 41.71 2.12
106 107 8.965986 TGGAAGATCAAACGAATATAGTATCG 57.034 34.615 0.00 4.40 44.33 2.92
107 108 8.789762 TGGAAGATCAAACGAATATAGTATCGA 58.210 33.333 11.05 0.00 41.43 3.59
108 109 9.063739 GGAAGATCAAACGAATATAGTATCGAC 57.936 37.037 11.05 0.00 41.43 4.20
109 110 9.828852 GAAGATCAAACGAATATAGTATCGACT 57.171 33.333 11.05 0.00 41.43 4.18
110 111 9.613957 AAGATCAAACGAATATAGTATCGACTG 57.386 33.333 11.05 8.01 41.43 3.51
111 112 9.000486 AGATCAAACGAATATAGTATCGACTGA 58.000 33.333 11.05 11.62 41.43 3.41
112 113 9.268255 GATCAAACGAATATAGTATCGACTGAG 57.732 37.037 11.05 0.00 41.43 3.35
113 114 8.374327 TCAAACGAATATAGTATCGACTGAGA 57.626 34.615 11.05 1.85 41.43 3.27
114 115 8.281194 TCAAACGAATATAGTATCGACTGAGAC 58.719 37.037 11.05 0.00 41.43 3.36
115 116 7.725818 AACGAATATAGTATCGACTGAGACA 57.274 36.000 11.05 0.00 41.43 3.41
116 117 7.119605 ACGAATATAGTATCGACTGAGACAC 57.880 40.000 11.05 0.00 41.43 3.67
117 118 6.704937 ACGAATATAGTATCGACTGAGACACA 59.295 38.462 11.05 0.00 41.43 3.72
118 119 7.226128 ACGAATATAGTATCGACTGAGACACAA 59.774 37.037 11.05 0.00 41.43 3.33
119 120 7.531198 CGAATATAGTATCGACTGAGACACAAC 59.469 40.741 0.00 0.00 41.43 3.32
120 121 3.851976 AGTATCGACTGAGACACAACC 57.148 47.619 0.00 0.00 38.81 3.77
121 122 3.154710 AGTATCGACTGAGACACAACCA 58.845 45.455 0.00 0.00 38.81 3.67
122 123 3.572682 AGTATCGACTGAGACACAACCAA 59.427 43.478 0.00 0.00 38.81 3.67
123 124 2.509052 TCGACTGAGACACAACCAAG 57.491 50.000 0.00 0.00 0.00 3.61
124 125 1.754803 TCGACTGAGACACAACCAAGT 59.245 47.619 0.00 0.00 0.00 3.16
125 126 2.128035 CGACTGAGACACAACCAAGTC 58.872 52.381 0.00 0.00 35.02 3.01
127 128 3.738281 CGACTGAGACACAACCAAGTCTT 60.738 47.826 0.00 0.00 44.61 3.01
128 129 4.499188 CGACTGAGACACAACCAAGTCTTA 60.499 45.833 0.00 0.00 44.61 2.10
130 131 4.950050 CTGAGACACAACCAAGTCTTAGT 58.050 43.478 0.00 0.00 44.61 2.24
131 132 4.945246 TGAGACACAACCAAGTCTTAGTC 58.055 43.478 0.00 0.00 44.61 2.59
132 133 3.978687 AGACACAACCAAGTCTTAGTCG 58.021 45.455 0.00 0.00 42.12 4.18
133 134 3.057734 GACACAACCAAGTCTTAGTCGG 58.942 50.000 0.00 0.00 0.00 4.79
134 135 2.433239 ACACAACCAAGTCTTAGTCGGT 59.567 45.455 0.00 0.00 0.00 4.69
135 136 3.057734 CACAACCAAGTCTTAGTCGGTC 58.942 50.000 0.00 0.00 0.00 4.79
136 137 2.288030 ACAACCAAGTCTTAGTCGGTCG 60.288 50.000 0.00 0.00 0.00 4.79
137 138 1.901591 ACCAAGTCTTAGTCGGTCGA 58.098 50.000 0.00 0.00 0.00 4.20
138 139 1.811359 ACCAAGTCTTAGTCGGTCGAG 59.189 52.381 0.00 0.00 0.00 4.04
139 140 2.082231 CCAAGTCTTAGTCGGTCGAGA 58.918 52.381 0.00 0.00 0.00 4.04
140 141 2.159544 CCAAGTCTTAGTCGGTCGAGAC 60.160 54.545 0.00 0.00 41.23 3.36
148 149 2.342910 GTCGGTCGAGACTTAGCAAA 57.657 50.000 3.09 0.00 38.09 3.68
149 150 2.669364 GTCGGTCGAGACTTAGCAAAA 58.331 47.619 3.09 0.00 38.09 2.44
150 151 2.407696 GTCGGTCGAGACTTAGCAAAAC 59.592 50.000 3.09 0.00 38.09 2.43
151 152 2.295349 TCGGTCGAGACTTAGCAAAACT 59.705 45.455 3.09 0.00 0.00 2.66
152 153 2.408704 CGGTCGAGACTTAGCAAAACTG 59.591 50.000 3.09 0.00 0.00 3.16
153 154 3.650139 GGTCGAGACTTAGCAAAACTGA 58.350 45.455 3.09 0.00 0.00 3.41
154 155 4.246458 GGTCGAGACTTAGCAAAACTGAT 58.754 43.478 3.09 0.00 0.00 2.90
155 156 4.691216 GGTCGAGACTTAGCAAAACTGATT 59.309 41.667 3.09 0.00 0.00 2.57
156 157 5.179555 GGTCGAGACTTAGCAAAACTGATTT 59.820 40.000 3.09 0.00 0.00 2.17
184 185 8.970859 AATTCAGTAAGAGGATAATTGTGAGG 57.029 34.615 0.00 0.00 0.00 3.86
185 186 7.733773 TTCAGTAAGAGGATAATTGTGAGGA 57.266 36.000 0.00 0.00 0.00 3.71
186 187 7.353414 TCAGTAAGAGGATAATTGTGAGGAG 57.647 40.000 0.00 0.00 0.00 3.69
187 188 7.126061 TCAGTAAGAGGATAATTGTGAGGAGA 58.874 38.462 0.00 0.00 0.00 3.71
188 189 7.286546 TCAGTAAGAGGATAATTGTGAGGAGAG 59.713 40.741 0.00 0.00 0.00 3.20
189 190 7.286546 CAGTAAGAGGATAATTGTGAGGAGAGA 59.713 40.741 0.00 0.00 0.00 3.10
190 191 7.841729 AGTAAGAGGATAATTGTGAGGAGAGAA 59.158 37.037 0.00 0.00 0.00 2.87
191 192 7.688918 AAGAGGATAATTGTGAGGAGAGAAT 57.311 36.000 0.00 0.00 0.00 2.40
192 193 8.789767 AAGAGGATAATTGTGAGGAGAGAATA 57.210 34.615 0.00 0.00 0.00 1.75
193 194 8.971032 AGAGGATAATTGTGAGGAGAGAATAT 57.029 34.615 0.00 0.00 0.00 1.28
194 195 9.391227 AGAGGATAATTGTGAGGAGAGAATATT 57.609 33.333 0.00 0.00 0.00 1.28
202 203 7.364522 TGTGAGGAGAGAATATTTTCAAACG 57.635 36.000 8.56 0.00 34.08 3.60
203 204 7.158697 TGTGAGGAGAGAATATTTTCAAACGA 58.841 34.615 8.56 0.00 34.08 3.85
204 205 7.824289 TGTGAGGAGAGAATATTTTCAAACGAT 59.176 33.333 8.56 0.00 34.08 3.73
205 206 8.119226 GTGAGGAGAGAATATTTTCAAACGATG 58.881 37.037 8.56 0.00 34.08 3.84
206 207 7.824289 TGAGGAGAGAATATTTTCAAACGATGT 59.176 33.333 8.56 0.00 34.08 3.06
207 208 9.314321 GAGGAGAGAATATTTTCAAACGATGTA 57.686 33.333 8.56 0.00 34.08 2.29
208 209 9.099454 AGGAGAGAATATTTTCAAACGATGTAC 57.901 33.333 8.56 0.00 34.08 2.90
209 210 9.099454 GGAGAGAATATTTTCAAACGATGTACT 57.901 33.333 8.56 0.00 34.08 2.73
211 212 9.099454 AGAGAATATTTTCAAACGATGTACTCC 57.901 33.333 8.56 0.00 34.08 3.85
212 213 8.209917 AGAATATTTTCAAACGATGTACTCCC 57.790 34.615 0.00 0.00 34.08 4.30
213 214 8.047310 AGAATATTTTCAAACGATGTACTCCCT 58.953 33.333 0.00 0.00 34.08 4.20
214 215 7.787725 ATATTTTCAAACGATGTACTCCCTC 57.212 36.000 0.00 0.00 0.00 4.30
215 216 3.604875 TTCAAACGATGTACTCCCTCC 57.395 47.619 0.00 0.00 0.00 4.30
216 217 1.475280 TCAAACGATGTACTCCCTCCG 59.525 52.381 0.00 0.00 0.00 4.63
217 218 1.203994 CAAACGATGTACTCCCTCCGT 59.796 52.381 0.00 0.00 0.00 4.69
218 219 1.553706 AACGATGTACTCCCTCCGTT 58.446 50.000 0.00 0.00 35.74 4.44
219 220 1.101331 ACGATGTACTCCCTCCGTTC 58.899 55.000 0.00 0.00 0.00 3.95
220 221 0.384669 CGATGTACTCCCTCCGTTCC 59.615 60.000 0.00 0.00 0.00 3.62
221 222 1.777941 GATGTACTCCCTCCGTTCCT 58.222 55.000 0.00 0.00 0.00 3.36
222 223 2.747467 CGATGTACTCCCTCCGTTCCTA 60.747 54.545 0.00 0.00 0.00 2.94
223 224 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
224 225 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
225 226 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
226 227 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
227 228 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
228 229 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
229 230 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
230 231 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
231 232 6.379579 ACTCCCTCCGTTCCTAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
232 233 6.267242 ACTCCCTCCGTTCCTAAATATAAGAC 59.733 42.308 0.00 0.00 0.00 3.01
233 234 5.541484 TCCCTCCGTTCCTAAATATAAGACC 59.459 44.000 0.00 0.00 0.00 3.85
234 235 5.543020 CCCTCCGTTCCTAAATATAAGACCT 59.457 44.000 0.00 0.00 0.00 3.85
235 236 6.042897 CCCTCCGTTCCTAAATATAAGACCTT 59.957 42.308 0.00 0.00 0.00 3.50
236 237 7.419865 CCCTCCGTTCCTAAATATAAGACCTTT 60.420 40.741 0.00 0.00 0.00 3.11
237 238 7.991460 CCTCCGTTCCTAAATATAAGACCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
255 256 9.660180 AGACCTTTTAGAGATTTCACTATGAAC 57.340 33.333 0.00 0.00 35.89 3.18
256 257 9.660180 GACCTTTTAGAGATTTCACTATGAACT 57.340 33.333 0.00 0.00 35.89 3.01
299 300 9.924650 AGACATACTTTAGAGTGTAAATTCGTT 57.075 29.630 0.00 0.00 36.60 3.85
301 302 9.701098 ACATACTTTAGAGTGTAAATTCGTTCA 57.299 29.630 0.00 0.00 36.60 3.18
307 308 8.722342 TTAGAGTGTAAATTCGTTCATTTTGC 57.278 30.769 0.00 0.00 0.00 3.68
308 309 6.970484 AGAGTGTAAATTCGTTCATTTTGCT 58.030 32.000 0.00 0.00 0.00 3.91
309 310 7.078228 AGAGTGTAAATTCGTTCATTTTGCTC 58.922 34.615 0.00 0.00 0.00 4.26
310 311 6.149633 AGTGTAAATTCGTTCATTTTGCTCC 58.850 36.000 0.00 0.00 0.00 4.70
311 312 5.059221 GTGTAAATTCGTTCATTTTGCTCCG 59.941 40.000 0.00 0.00 0.00 4.63
312 313 3.915437 AATTCGTTCATTTTGCTCCGT 57.085 38.095 0.00 0.00 0.00 4.69
313 314 5.365403 AAATTCGTTCATTTTGCTCCGTA 57.635 34.783 0.00 0.00 0.00 4.02
314 315 5.560966 AATTCGTTCATTTTGCTCCGTAT 57.439 34.783 0.00 0.00 0.00 3.06
315 316 6.671614 AATTCGTTCATTTTGCTCCGTATA 57.328 33.333 0.00 0.00 0.00 1.47
316 317 6.861065 ATTCGTTCATTTTGCTCCGTATAT 57.139 33.333 0.00 0.00 0.00 0.86
317 318 7.956420 ATTCGTTCATTTTGCTCCGTATATA 57.044 32.000 0.00 0.00 0.00 0.86
318 319 7.402811 TTCGTTCATTTTGCTCCGTATATAG 57.597 36.000 0.00 0.00 0.00 1.31
319 320 6.509656 TCGTTCATTTTGCTCCGTATATAGT 58.490 36.000 0.00 0.00 0.00 2.12
320 321 6.639686 TCGTTCATTTTGCTCCGTATATAGTC 59.360 38.462 0.00 0.00 0.00 2.59
321 322 6.641314 CGTTCATTTTGCTCCGTATATAGTCT 59.359 38.462 0.00 0.00 0.00 3.24
322 323 7.806487 CGTTCATTTTGCTCCGTATATAGTCTA 59.194 37.037 0.00 0.00 0.00 2.59
323 324 9.640963 GTTCATTTTGCTCCGTATATAGTCTAT 57.359 33.333 0.00 0.00 0.00 1.98
341 342 7.909485 AGTCTATTATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
342 343 7.953752 AGTCTATTATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
343 344 7.564292 AGTCTATTATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
344 345 8.854117 GTCTATTATTTAGAAACGGAGGGAGTA 58.146 37.037 0.00 0.00 0.00 2.59
345 346 9.597681 TCTATTATTTAGAAACGGAGGGAGTAT 57.402 33.333 0.00 0.00 0.00 2.12
348 349 8.773033 TTATTTAGAAACGGAGGGAGTATAGT 57.227 34.615 0.00 0.00 0.00 2.12
349 350 6.461110 TTTAGAAACGGAGGGAGTATAGTG 57.539 41.667 0.00 0.00 0.00 2.74
350 351 4.246712 AGAAACGGAGGGAGTATAGTGA 57.753 45.455 0.00 0.00 0.00 3.41
351 352 4.607239 AGAAACGGAGGGAGTATAGTGAA 58.393 43.478 0.00 0.00 0.00 3.18
352 353 5.021458 AGAAACGGAGGGAGTATAGTGAAA 58.979 41.667 0.00 0.00 0.00 2.69
353 354 5.661759 AGAAACGGAGGGAGTATAGTGAAAT 59.338 40.000 0.00 0.00 0.00 2.17
354 355 5.532664 AACGGAGGGAGTATAGTGAAATC 57.467 43.478 0.00 0.00 0.00 2.17
355 356 3.896272 ACGGAGGGAGTATAGTGAAATCC 59.104 47.826 0.00 0.00 0.00 3.01
356 357 4.153411 CGGAGGGAGTATAGTGAAATCCT 58.847 47.826 0.00 0.00 0.00 3.24
357 358 5.163012 ACGGAGGGAGTATAGTGAAATCCTA 60.163 44.000 0.00 0.00 0.00 2.94
358 359 5.773680 CGGAGGGAGTATAGTGAAATCCTAA 59.226 44.000 0.00 0.00 0.00 2.69
359 360 6.267014 CGGAGGGAGTATAGTGAAATCCTAAA 59.733 42.308 0.00 0.00 0.00 1.85
360 361 7.201974 CGGAGGGAGTATAGTGAAATCCTAAAA 60.202 40.741 0.00 0.00 0.00 1.52
361 362 8.491958 GGAGGGAGTATAGTGAAATCCTAAAAA 58.508 37.037 0.00 0.00 0.00 1.94
385 386 8.959705 AAAGTCTTATATTTAGAAACGGAGGG 57.040 34.615 0.00 0.00 0.00 4.30
386 387 7.909485 AGTCTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
396 397 4.091549 AGAAACGGAGGGAGTATTGTGTA 58.908 43.478 0.00 0.00 0.00 2.90
399 400 4.240881 ACGGAGGGAGTATTGTGTAGTA 57.759 45.455 0.00 0.00 0.00 1.82
417 418 6.263392 GTGTAGTATAGAGAGCAGATGTTGGA 59.737 42.308 0.00 0.00 0.00 3.53
460 461 2.362077 TCTCCTTTGCTTTGCTTTGGTC 59.638 45.455 0.00 0.00 0.00 4.02
496 503 5.432885 AAACACCTTTCTCATACGTTTGG 57.567 39.130 6.15 0.00 0.00 3.28
508 515 1.082756 CGTTTGGACTGCACGCTTC 60.083 57.895 0.00 0.00 0.00 3.86
562 569 4.567385 CTGCCGCTCTCCGCTCTC 62.567 72.222 0.00 0.00 36.13 3.20
617 624 2.125673 CGCCGTTCCCGAGACAAT 60.126 61.111 0.00 0.00 35.63 2.71
644 651 4.204891 GCGTGCGTGCGTGTATCC 62.205 66.667 3.11 0.00 0.00 2.59
645 652 3.550992 CGTGCGTGCGTGTATCCC 61.551 66.667 0.00 0.00 0.00 3.85
646 653 3.192922 GTGCGTGCGTGTATCCCC 61.193 66.667 0.00 0.00 0.00 4.81
647 654 3.696676 TGCGTGCGTGTATCCCCA 61.697 61.111 0.00 0.00 0.00 4.96
692 723 6.320164 TCCATCCATCGGTTCGAAATTTAAAT 59.680 34.615 0.00 0.00 39.99 1.40
693 724 6.636850 CCATCCATCGGTTCGAAATTTAAATC 59.363 38.462 0.00 0.00 39.99 2.17
694 725 6.126568 TCCATCGGTTCGAAATTTAAATCC 57.873 37.500 0.00 0.00 39.99 3.01
695 726 5.648526 TCCATCGGTTCGAAATTTAAATCCA 59.351 36.000 0.00 0.00 39.99 3.41
696 727 5.741982 CCATCGGTTCGAAATTTAAATCCAC 59.258 40.000 0.00 0.00 39.99 4.02
792 859 2.512974 GTAATCCACCCACGCCCG 60.513 66.667 0.00 0.00 0.00 6.13
828 895 1.673920 AGCGCACGAAAAGGAAAGAAA 59.326 42.857 11.47 0.00 0.00 2.52
956 1033 2.695597 CTCCTCCTCCTGCCTCCT 59.304 66.667 0.00 0.00 0.00 3.69
1020 1098 2.809010 GAGCAGGGCTCGTACTCC 59.191 66.667 2.07 0.00 45.85 3.85
1021 1099 3.127352 GAGCAGGGCTCGTACTCCG 62.127 68.421 2.07 0.00 45.85 4.63
1022 1100 4.208686 GCAGGGCTCGTACTCCGG 62.209 72.222 0.00 0.00 37.11 5.14
1023 1101 4.208686 CAGGGCTCGTACTCCGGC 62.209 72.222 0.00 0.00 37.11 6.13
1353 1530 2.188207 GCTTCCTCTCCTTCCCGC 59.812 66.667 0.00 0.00 0.00 6.13
1356 1533 0.615850 CTTCCTCTCCTTCCCGCTTT 59.384 55.000 0.00 0.00 0.00 3.51
1402 1584 2.185350 CGCGCTCCTGAGATTGGT 59.815 61.111 5.56 0.00 0.00 3.67
1405 1587 0.674895 GCGCTCCTGAGATTGGTTGT 60.675 55.000 0.00 0.00 0.00 3.32
1407 1589 1.457346 GCTCCTGAGATTGGTTGTGG 58.543 55.000 0.00 0.00 0.00 4.17
1433 1615 1.683441 CTTGGGCTAGGGTTTCGGT 59.317 57.895 0.00 0.00 0.00 4.69
1436 1618 1.221021 GGGCTAGGGTTTCGGTCTG 59.779 63.158 0.00 0.00 0.00 3.51
1438 1620 1.597461 GCTAGGGTTTCGGTCTGCT 59.403 57.895 0.00 0.00 0.00 4.24
1439 1621 0.036294 GCTAGGGTTTCGGTCTGCTT 60.036 55.000 0.00 0.00 0.00 3.91
1441 1623 0.611714 TAGGGTTTCGGTCTGCTTCC 59.388 55.000 0.00 0.00 0.00 3.46
1442 1624 1.674651 GGGTTTCGGTCTGCTTCCC 60.675 63.158 0.00 0.00 0.00 3.97
1443 1625 2.033194 GGTTTCGGTCTGCTTCCCG 61.033 63.158 2.65 2.65 45.55 5.14
1444 1626 2.033194 GTTTCGGTCTGCTTCCCGG 61.033 63.158 0.00 0.00 44.32 5.73
1445 1627 3.894547 TTTCGGTCTGCTTCCCGGC 62.895 63.158 0.00 0.00 44.32 6.13
1470 1653 4.164221 TGCTAGGGTTTAGCTTAGATTGCT 59.836 41.667 0.00 0.00 43.79 3.91
1475 1658 3.309954 GGTTTAGCTTAGATTGCTGACCG 59.690 47.826 0.00 0.00 41.32 4.79
1485 1668 4.704833 GCTGACCGCCTGCTTCCA 62.705 66.667 0.00 0.00 36.86 3.53
1490 1673 1.152756 ACCGCCTGCTTCCAGTTTT 60.153 52.632 0.00 0.00 37.38 2.43
1491 1674 1.172812 ACCGCCTGCTTCCAGTTTTC 61.173 55.000 0.00 0.00 37.38 2.29
1493 1676 1.581447 GCCTGCTTCCAGTTTTCGG 59.419 57.895 0.00 0.00 37.38 4.30
1494 1677 1.581447 CCTGCTTCCAGTTTTCGGC 59.419 57.895 0.00 0.00 37.38 5.54
1495 1678 1.207593 CTGCTTCCAGTTTTCGGCG 59.792 57.895 0.00 0.00 34.31 6.46
1499 1682 1.068541 GCTTCCAGTTTTCGGCGATTT 60.069 47.619 11.76 0.00 0.00 2.17
1509 1692 2.746803 CGGCGATTTTGACCCGACC 61.747 63.158 0.00 0.00 43.20 4.79
1511 1694 1.644786 GGCGATTTTGACCCGACCAG 61.645 60.000 0.00 0.00 0.00 4.00
1531 1714 0.036483 TGCTATTGCTGGCACGAAGA 60.036 50.000 0.00 0.00 40.48 2.87
1545 1728 2.069273 ACGAAGAGCCAATTTCACGAG 58.931 47.619 0.00 0.00 0.00 4.18
1559 1745 3.842007 TCACGAGGAAAAAGGGTGTTA 57.158 42.857 0.00 0.00 0.00 2.41
1580 1770 4.455070 AACTGGAGCCCTCTAAAGTTTT 57.545 40.909 0.00 0.00 29.92 2.43
1581 1771 4.455070 ACTGGAGCCCTCTAAAGTTTTT 57.545 40.909 0.00 0.00 0.00 1.94
1660 1860 2.177531 GCATGGCTGTGCGTTCTG 59.822 61.111 0.00 0.00 35.10 3.02
1666 1866 1.160137 GGCTGTGCGTTCTGAAGAAT 58.840 50.000 0.00 0.00 36.33 2.40
1673 1873 4.754618 TGTGCGTTCTGAAGAATAACACAT 59.245 37.500 15.76 0.00 38.17 3.21
1680 1880 6.061022 TCTGAAGAATAACACATGGGCTTA 57.939 37.500 0.00 0.00 0.00 3.09
1681 1881 6.115446 TCTGAAGAATAACACATGGGCTTAG 58.885 40.000 0.00 0.00 0.00 2.18
1682 1882 6.061022 TGAAGAATAACACATGGGCTTAGA 57.939 37.500 0.00 0.00 0.00 2.10
1683 1883 6.662755 TGAAGAATAACACATGGGCTTAGAT 58.337 36.000 0.00 0.00 0.00 1.98
1684 1884 6.767902 TGAAGAATAACACATGGGCTTAGATC 59.232 38.462 0.00 0.00 0.00 2.75
1685 1885 6.506538 AGAATAACACATGGGCTTAGATCT 57.493 37.500 0.00 0.00 0.00 2.75
1686 1886 6.294473 AGAATAACACATGGGCTTAGATCTG 58.706 40.000 5.18 0.00 0.00 2.90
1687 1887 5.636903 ATAACACATGGGCTTAGATCTGT 57.363 39.130 5.18 0.00 0.00 3.41
1701 1901 6.370166 GCTTAGATCTGTGCTTGAAACTAGTT 59.630 38.462 5.18 1.12 0.00 2.24
1711 1911 6.872020 GTGCTTGAAACTAGTTATACTGGACA 59.128 38.462 8.92 0.00 30.59 4.02
1716 1916 9.841295 TTGAAACTAGTTATACTGGACAACTTT 57.159 29.630 8.92 0.00 34.48 2.66
1732 1937 6.349033 GGACAACTTTTATTATCCTGTGCGTT 60.349 38.462 0.00 0.00 0.00 4.84
1764 1969 9.893305 GATGTTTGTAAGCTACACTTAAATTGT 57.107 29.630 0.00 0.00 42.50 2.71
1766 1971 7.646130 TGTTTGTAAGCTACACTTAAATTGTGC 59.354 33.333 0.00 2.85 42.50 4.57
1768 1973 5.765677 TGTAAGCTACACTTAAATTGTGCCA 59.234 36.000 0.00 0.00 42.50 4.92
1777 1983 8.723942 ACACTTAAATTGTGCCAATTTTTGTA 57.276 26.923 22.50 9.11 38.86 2.41
1805 2011 2.355818 GGGAGTGTGGTCTATTGGAACC 60.356 54.545 0.00 0.00 0.00 3.62
1815 2021 6.601613 GTGGTCTATTGGAACCATATGTTTGA 59.398 38.462 1.24 0.00 37.29 2.69
1866 2075 6.429385 AGGAGATGTTCTTCATGTTTCAGTTC 59.571 38.462 0.00 0.00 36.83 3.01
1917 2126 7.391554 AGTTGTAATTGCATCATACTGTTGTCT 59.608 33.333 7.26 0.00 0.00 3.41
2036 2248 3.906720 ACGGTAAGTAGCAATCATGGT 57.093 42.857 0.00 0.00 41.03 3.55
2084 2296 1.609072 GTTCTGACCAAGGGCTGTTTC 59.391 52.381 0.00 0.00 0.00 2.78
2230 2442 7.148018 ACCAGGAAAGTATCTGCATATTTTGTG 60.148 37.037 0.00 0.00 27.50 3.33
2261 2473 4.494591 ACTTCCAGTTTTCTACTCCCTCT 58.505 43.478 0.00 0.00 33.85 3.69
2277 2532 5.834204 ACTCCCTCTGTAAACGCTCTTATAT 59.166 40.000 0.00 0.00 0.00 0.86
2359 2614 4.009675 TGTTAGCTGTCCATGGTGAATTC 58.990 43.478 12.58 0.00 0.00 2.17
2374 2629 5.911178 TGGTGAATTCTGATCCCCTAGTATT 59.089 40.000 7.05 0.00 0.00 1.89
2390 2645 8.772250 CCCCTAGTATTAATGGATGATGTATGT 58.228 37.037 0.00 0.00 0.00 2.29
2402 2657 6.543465 TGGATGATGTATGTCCTTTTGATGTC 59.457 38.462 0.00 0.00 33.15 3.06
2416 2671 3.490439 TGATGTCCAACTTGCTTCAGA 57.510 42.857 0.00 0.00 0.00 3.27
2417 2672 3.819368 TGATGTCCAACTTGCTTCAGAA 58.181 40.909 0.00 0.00 0.00 3.02
2426 2681 5.700832 CCAACTTGCTTCAGAACACAGTATA 59.299 40.000 0.00 0.00 0.00 1.47
2427 2682 6.372659 CCAACTTGCTTCAGAACACAGTATAT 59.627 38.462 0.00 0.00 0.00 0.86
2483 2745 4.378978 CGCGTTCCATTATTTTGGACTGAA 60.379 41.667 0.00 0.00 45.42 3.02
2491 2753 7.232330 TCCATTATTTTGGACTGAACATTGTCA 59.768 33.333 0.00 0.00 40.90 3.58
2493 2755 7.581213 TTATTTTGGACTGAACATTGTCACT 57.419 32.000 0.00 0.00 35.11 3.41
2523 2785 8.435187 TGATATCCTCTGCAACATTATCTCTTT 58.565 33.333 0.00 0.00 0.00 2.52
2524 2786 9.282569 GATATCCTCTGCAACATTATCTCTTTT 57.717 33.333 0.00 0.00 0.00 2.27
2526 2788 5.882557 TCCTCTGCAACATTATCTCTTTTCC 59.117 40.000 0.00 0.00 0.00 3.13
2527 2789 5.067023 CCTCTGCAACATTATCTCTTTTCCC 59.933 44.000 0.00 0.00 0.00 3.97
2528 2790 5.819991 TCTGCAACATTATCTCTTTTCCCT 58.180 37.500 0.00 0.00 0.00 4.20
2553 2815 4.335594 ACTGCTTTTGTACCTGTTCTTGAC 59.664 41.667 0.00 0.00 0.00 3.18
2570 2832 5.551233 TCTTGACGATTGGATTCTTCTGTT 58.449 37.500 0.00 0.00 0.00 3.16
2637 2899 0.686789 TAGAGCCTGCTTTGTCTGCA 59.313 50.000 0.00 0.00 38.81 4.41
2643 2905 2.221169 CCTGCTTTGTCTGCACAAGTA 58.779 47.619 0.00 0.00 43.54 2.24
2652 2914 1.977854 TCTGCACAAGTAGACCACCAT 59.022 47.619 0.00 0.00 31.12 3.55
2755 3017 2.483188 CCCGCTGATGTAAGGAGTTACC 60.483 54.545 0.00 0.00 38.24 2.85
2782 3044 9.930693 TTGTTTGTGTAATTTCCTTTTAGTTGT 57.069 25.926 0.00 0.00 0.00 3.32
2815 3077 5.093849 TGTATTAAGGTGCTGGTAAGGAC 57.906 43.478 0.00 0.00 43.65 3.85
2843 3105 6.420306 TGTGAACATTTTTGACGAATTCCATG 59.580 34.615 0.00 0.00 0.00 3.66
2898 3160 6.813649 TGTTTAGTATGCTGTCTCAGTGATTC 59.186 38.462 0.00 0.00 33.43 2.52
2957 3219 6.741992 TGCTCGATCAAACTTGAATATGTT 57.258 33.333 0.00 0.00 41.13 2.71
3006 3268 6.148315 CACTGTGATCTAGCAACTTTCATTGA 59.852 38.462 0.32 0.00 0.00 2.57
3008 3270 7.094890 ACTGTGATCTAGCAACTTTCATTGAAG 60.095 37.037 0.00 0.00 0.00 3.02
3009 3271 6.712095 TGTGATCTAGCAACTTTCATTGAAGT 59.288 34.615 0.00 0.00 41.44 3.01
3048 3310 7.066163 TGACATATGATGTGGATTCAGTTGTTC 59.934 37.037 10.38 0.00 45.03 3.18
3058 3320 6.373774 GTGGATTCAGTTGTTCAGATTGATCT 59.626 38.462 0.00 0.00 37.72 2.75
3064 3326 8.908786 TCAGTTGTTCAGATTGATCTAAGTTT 57.091 30.769 0.00 0.00 34.85 2.66
3065 3327 8.993121 TCAGTTGTTCAGATTGATCTAAGTTTC 58.007 33.333 0.00 0.00 34.85 2.78
3087 3349 4.654262 TCTGTGTCTGTTAGGACCTCTTTT 59.346 41.667 0.00 0.00 35.54 2.27
3089 3351 4.065789 GTGTCTGTTAGGACCTCTTTTGG 58.934 47.826 0.00 0.00 35.54 3.28
3101 3363 3.201266 ACCTCTTTTGGTTCACCTGTACA 59.799 43.478 0.00 0.00 36.89 2.90
3117 3379 6.423182 ACCTGTACAATATTAGGTGCACAAT 58.577 36.000 20.43 13.10 41.76 2.71
3184 3447 5.422012 AGGGTAGCATGGATTTTACCTTTTG 59.578 40.000 0.00 0.00 36.61 2.44
3201 3464 2.700722 TTGGTTTCCTTGTTTTGCCC 57.299 45.000 0.00 0.00 0.00 5.36
3214 3477 6.094325 CCTTGTTTTGCCCGTCTAATACAATA 59.906 38.462 0.00 0.00 0.00 1.90
3241 3504 5.473504 CCTGGCAACTAAGTTATTCAGTGTT 59.526 40.000 0.00 0.00 37.61 3.32
3285 3551 8.552034 GGCAAATGTAGCTGTACTTCTATTAAG 58.448 37.037 0.00 0.00 0.00 1.85
3293 3559 7.848128 AGCTGTACTTCTATTAAGCTTGGTTA 58.152 34.615 9.86 0.00 37.74 2.85
3295 3561 7.224949 GCTGTACTTCTATTAAGCTTGGTTAGG 59.775 40.741 9.86 0.00 0.00 2.69
3316 3582 6.670695 AGGATTTCAGTTGCCTGTTTTAAT 57.329 33.333 0.00 0.00 39.82 1.40
3405 3671 6.100004 ACAATATATGAGCTCCCGTTATTCG 58.900 40.000 12.15 7.24 39.52 3.34
3477 3743 1.238439 CGGAATCAAGCAACACTGGT 58.762 50.000 0.00 0.00 33.72 4.00
3495 3761 6.672657 ACACTGGTTATTATAGGACTTCTGGT 59.327 38.462 0.00 0.00 0.00 4.00
3666 3932 2.751259 GCTGCACATCATTCTCTTTCCA 59.249 45.455 0.00 0.00 0.00 3.53
3740 4006 6.500684 TGTATGGTGCTTGAATTTTCTCTC 57.499 37.500 0.00 0.00 0.00 3.20
3889 4155 2.341176 CCAAGTTTGGCTGCTGGC 59.659 61.111 10.40 10.40 42.21 4.85
3905 4171 2.052104 GGCGGCAGGCAGGTAATTT 61.052 57.895 3.07 0.00 46.16 1.82
4022 4288 2.378038 AGCAGTTGAAACATGGTGTGT 58.622 42.857 0.00 0.00 44.84 3.72
4062 4328 6.376018 CCCAATCGACCCTTTTAACATCTTTA 59.624 38.462 0.00 0.00 0.00 1.85
4063 4329 7.068226 CCCAATCGACCCTTTTAACATCTTTAT 59.932 37.037 0.00 0.00 0.00 1.40
4064 4330 9.116067 CCAATCGACCCTTTTAACATCTTTATA 57.884 33.333 0.00 0.00 0.00 0.98
4243 4510 6.540438 ACATTCTCCATCAGATTTTGCATT 57.460 33.333 0.00 0.00 0.00 3.56
4401 4668 6.475504 TGATGTCTCCTTTTAAAGATGCTCA 58.524 36.000 6.24 0.17 0.00 4.26
4420 4687 1.417890 CATGCTAGTCCTCGGGGAAAT 59.582 52.381 5.00 0.00 44.15 2.17
4438 4705 5.247862 GGAAATTTTCTTCCTACCCGTACA 58.752 41.667 8.93 0.00 41.56 2.90
4456 4723 5.460646 CGTACAATTGGTTCAGATTTTGCT 58.539 37.500 10.83 0.00 0.00 3.91
4516 4783 1.134670 AGATTACTGCTTGAGTCCGGC 60.135 52.381 0.00 0.00 35.96 6.13
4522 4789 2.115291 GCTTGAGTCCGGCCAATCC 61.115 63.158 2.24 0.00 0.00 3.01
4542 4809 1.404315 CCTGCGGACTGTAGAAAGACC 60.404 57.143 0.20 0.00 30.84 3.85
4675 4942 1.069049 CCAAAAGGCAAACAGTCTGGG 59.931 52.381 4.53 0.00 28.17 4.45
4676 4943 0.752658 AAAAGGCAAACAGTCTGGGC 59.247 50.000 4.53 4.92 28.17 5.36
4782 5049 8.884124 TTTCAAGATTTGGATGGAGTTAATCT 57.116 30.769 0.00 0.00 37.20 2.40
4863 5130 7.563924 AGATGGATCATCAAAAGTTCATTCCAT 59.436 33.333 10.08 0.00 42.72 3.41
4967 5234 7.334421 GGAATTCAGTTTCTGCTACTACATCAA 59.666 37.037 7.93 0.00 0.00 2.57
5174 5441 2.104622 TGAGACAGATGTGAAGGCAACA 59.895 45.455 0.00 0.00 41.41 3.33
5224 5491 4.023536 GGAGCGGAAAGTTCAACATGTTAA 60.024 41.667 11.53 0.00 0.00 2.01
5256 5523 4.697352 AGAAAGTTGAATCAACCTCATCGG 59.303 41.667 21.13 0.00 44.49 4.18
5339 5606 1.141254 TCTACACCCGGCTTGTTTTCA 59.859 47.619 11.78 0.00 0.00 2.69
5408 5675 4.976987 ACAACACTGGTTTTACGTTTCAG 58.023 39.130 0.00 0.00 34.21 3.02
5415 5682 5.472137 ACTGGTTTTACGTTTCAGCATGTAT 59.528 36.000 0.00 0.00 37.40 2.29
5430 5697 0.817654 TGTATCTCCTGCAGACCGTG 59.182 55.000 17.39 0.00 32.26 4.94
5489 5756 7.876068 TCAAATAAAGACGATAAACAGACCAGT 59.124 33.333 0.00 0.00 0.00 4.00
5511 5778 5.128663 AGTGCTTCACCTTTTATGTTTGGTT 59.871 36.000 0.00 0.00 34.49 3.67
5550 5817 6.684686 ACATCAGATTTGGAAACATCAACAG 58.315 36.000 0.00 0.00 42.32 3.16
5731 6099 6.645306 AGGCTAGAAAGAAATCTGTTAGGAC 58.355 40.000 0.00 0.00 0.00 3.85
5747 6115 8.704668 TCTGTTAGGACAAGAGATGCATATTAA 58.295 33.333 0.00 0.00 34.85 1.40
5860 6228 6.932400 AGTTCGGACATGTTGTATACTTTTGA 59.068 34.615 0.00 0.00 0.00 2.69
5929 6297 2.747460 TGCGCAGACCAAGGATGC 60.747 61.111 5.66 9.86 36.60 3.91
5953 6321 7.030768 GCAGTAATTCTAAGAAGAACGAGACT 58.969 38.462 0.00 0.00 44.40 3.24
5957 6325 9.276397 GTAATTCTAAGAAGAACGAGACTACAC 57.724 37.037 0.00 0.00 44.40 2.90
5992 6361 6.149474 GTCACAGTACTACCAATCAGCAATTT 59.851 38.462 0.00 0.00 0.00 1.82
6111 6483 8.647256 ACATCTCATGTATCAGTATCTCATCA 57.353 34.615 0.00 0.00 42.78 3.07
6131 6503 0.827368 CTGCCCTACTCTCTGGGAAC 59.173 60.000 1.75 0.00 46.15 3.62
6132 6504 0.116342 TGCCCTACTCTCTGGGAACA 59.884 55.000 1.75 0.00 46.15 3.18
6161 6533 6.921486 TTCCGAGGCCAATAACATATAGTA 57.079 37.500 5.01 0.00 0.00 1.82
6202 6575 9.146984 TGTAGTTACAACTGTGAAACATATAGC 57.853 33.333 4.86 0.00 38.85 2.97
6238 6612 7.890655 AGTTTGAAAGATAAGGGCATCTTAGTT 59.109 33.333 0.00 0.00 43.01 2.24
6400 6774 5.578005 TCTGCTAACGTATTCTGCTACTT 57.422 39.130 0.00 0.00 0.00 2.24
6401 6775 5.340803 TCTGCTAACGTATTCTGCTACTTG 58.659 41.667 0.00 0.00 0.00 3.16
6415 6789 2.287009 GCTACTTGTGTGTTTCCAGTGC 60.287 50.000 0.00 0.00 0.00 4.40
6453 6827 4.715534 TTGGACACACCTAATTTGGAGA 57.284 40.909 13.16 0.00 39.86 3.71
6455 6829 4.651778 TGGACACACCTAATTTGGAGAAG 58.348 43.478 13.16 6.09 39.86 2.85
6716 7090 3.743521 CAGTCCACCTGTTTCATCTTCA 58.256 45.455 0.00 0.00 36.37 3.02
6729 7103 6.183360 TGTTTCATCTTCAGTTCCTGCATTTT 60.183 34.615 0.00 0.00 0.00 1.82
6754 7128 3.698040 ACTATCAATTTTGGCTCCAGCAG 59.302 43.478 0.03 0.00 44.36 4.24
6761 7135 1.993701 TTGGCTCCAGCAGTCCAACA 61.994 55.000 0.03 0.00 44.36 3.33
6768 7142 1.543208 CCAGCAGTCCAACAGTAGCAA 60.543 52.381 0.00 0.00 0.00 3.91
6881 7255 0.396695 CCCCAGAATCAGCCAGCAAT 60.397 55.000 0.00 0.00 0.00 3.56
6885 7259 0.815734 AGAATCAGCCAGCAATGCAC 59.184 50.000 8.35 0.00 0.00 4.57
6902 7276 3.554934 TGCACCATCCAATCTGAATACC 58.445 45.455 0.00 0.00 0.00 2.73
6903 7277 3.202818 TGCACCATCCAATCTGAATACCT 59.797 43.478 0.00 0.00 0.00 3.08
7210 7584 1.398390 CACGATCTTTGGTAGCAAGCC 59.602 52.381 7.51 0.00 0.00 4.35
7259 7633 1.372683 GCCTCAGAGTTCAGCCACA 59.627 57.895 0.00 0.00 0.00 4.17
7271 7645 1.160137 CAGCCACACAGTTTAGCTCC 58.840 55.000 0.00 0.00 0.00 4.70
7296 7670 0.179073 CCCGATTGTGGCTAGTGGAG 60.179 60.000 0.00 0.00 0.00 3.86
7297 7671 0.537188 CCGATTGTGGCTAGTGGAGT 59.463 55.000 0.00 0.00 0.00 3.85
7298 7672 1.645034 CGATTGTGGCTAGTGGAGTG 58.355 55.000 0.00 0.00 0.00 3.51
7337 7711 1.202818 GGACCTGGCACTGTCTCTTTT 60.203 52.381 11.06 0.00 32.83 2.27
7342 7716 0.877743 GGCACTGTCTCTTTTGGAGC 59.122 55.000 0.00 0.00 41.60 4.70
7382 7756 0.675633 CCTTGTTGTTTGGAGCAGGG 59.324 55.000 0.00 0.00 0.00 4.45
7428 7802 3.064324 CTTTTGGAGCGGGGGCTG 61.064 66.667 0.00 0.00 0.00 4.85
7566 7943 0.755686 GACGCCTTCCTCATCTGGAT 59.244 55.000 0.00 0.00 35.83 3.41
7593 7970 4.254492 GACTATGACTTTTGGAGGGACAC 58.746 47.826 0.00 0.00 0.00 3.67
7644 8021 1.334160 TGGCGTGACAACTTCCTCTA 58.666 50.000 0.00 0.00 0.00 2.43
8087 8464 4.651867 AGCATGGCTGATGACACC 57.348 55.556 0.00 0.00 37.57 4.16
8136 8513 3.845625 CCAGTGTTTGGTTCTTCGC 57.154 52.632 0.00 0.00 42.41 4.70
8172 8549 2.842188 TAGTTCACCCGCCGCTCCTA 62.842 60.000 0.00 0.00 0.00 2.94
8270 8647 2.281484 GGCGGTCAACAAGGCTCA 60.281 61.111 0.00 0.00 0.00 4.26
8348 8725 3.925630 CTCGTTGGGCAGCATGGGT 62.926 63.158 0.00 0.00 35.86 4.51
8412 8789 1.066071 AGAAGAAAAGGTAGCCTCGCC 60.066 52.381 0.00 0.00 30.89 5.54
8542 8922 1.811266 CATCGAAGCTGTCCCACCG 60.811 63.158 0.00 0.00 0.00 4.94
8580 8960 0.829990 TGGAGGCTGTCATGCGAATA 59.170 50.000 0.00 0.00 0.00 1.75
8585 8965 3.136763 AGGCTGTCATGCGAATATCAAG 58.863 45.455 0.00 0.00 0.00 3.02
8812 9194 3.284323 TCGCAGAGAAAGTGTACTGAC 57.716 47.619 0.00 0.00 32.90 3.51
8813 9195 2.885266 TCGCAGAGAAAGTGTACTGACT 59.115 45.455 0.00 0.00 32.90 3.41
8814 9196 2.983136 CGCAGAGAAAGTGTACTGACTG 59.017 50.000 0.00 0.00 32.90 3.51
8815 9197 3.321497 GCAGAGAAAGTGTACTGACTGG 58.679 50.000 0.00 0.00 32.90 4.00
8817 9199 4.302455 CAGAGAAAGTGTACTGACTGGTG 58.698 47.826 0.00 0.00 32.90 4.17
8818 9200 3.961408 AGAGAAAGTGTACTGACTGGTGT 59.039 43.478 0.00 0.00 0.00 4.16
8819 9201 5.009710 CAGAGAAAGTGTACTGACTGGTGTA 59.990 44.000 0.00 0.00 32.90 2.90
8825 9207 8.773404 AAAGTGTACTGACTGGTGTATTATTC 57.227 34.615 0.00 0.00 0.00 1.75
8826 9208 6.875076 AGTGTACTGACTGGTGTATTATTCC 58.125 40.000 0.00 0.00 0.00 3.01
8911 9293 1.374758 CTGCCGTCTGGTCTGGTTC 60.375 63.158 0.00 0.00 37.67 3.62
8917 9299 2.076863 CGTCTGGTCTGGTTCATTTCC 58.923 52.381 0.00 0.00 0.00 3.13
8919 9301 3.756117 GTCTGGTCTGGTTCATTTCCTT 58.244 45.455 0.00 0.00 0.00 3.36
8920 9302 4.145052 GTCTGGTCTGGTTCATTTCCTTT 58.855 43.478 0.00 0.00 0.00 3.11
8921 9303 4.584743 GTCTGGTCTGGTTCATTTCCTTTT 59.415 41.667 0.00 0.00 0.00 2.27
8973 9355 2.284190 GTAGAGAGGAAATGCACTGGC 58.716 52.381 0.00 0.00 41.68 4.85
8983 9365 2.691409 ATGCACTGGCGTTGTACTAT 57.309 45.000 0.00 0.00 45.35 2.12
8992 9374 7.797123 GCACTGGCGTTGTACTATTTATTATTC 59.203 37.037 0.00 0.00 0.00 1.75
9097 9479 3.701241 CAATGTGCCGTGTTTGTTTACT 58.299 40.909 0.00 0.00 0.00 2.24
9101 9483 1.202200 TGCCGTGTTTGTTTACTGTGC 60.202 47.619 0.00 0.00 0.00 4.57
9130 9528 3.125316 GTCCTTATGAGCTGTTCCGTTTG 59.875 47.826 0.00 0.00 0.00 2.93
9138 9536 1.086696 CTGTTCCGTTTGATCGCCAT 58.913 50.000 0.00 0.00 0.00 4.40
9203 9603 1.738099 CTGCTTGACCCGTTCTCCG 60.738 63.158 0.00 0.00 0.00 4.63
9213 9613 1.873863 CGTTCTCCGGGAAAAAGGC 59.126 57.895 0.00 0.00 35.51 4.35
9240 9640 4.061357 TCGGCATCCATACGTTGAATTA 57.939 40.909 0.00 0.00 0.00 1.40
9241 9641 4.637276 TCGGCATCCATACGTTGAATTAT 58.363 39.130 0.00 0.00 0.00 1.28
9242 9642 5.060506 TCGGCATCCATACGTTGAATTATT 58.939 37.500 0.00 0.00 0.00 1.40
9243 9643 6.224584 TCGGCATCCATACGTTGAATTATTA 58.775 36.000 0.00 0.00 0.00 0.98
9262 9662 2.167219 CAGTCACGTAGCATGCCCG 61.167 63.158 21.66 21.66 0.00 6.13
9318 9720 0.690762 ATGTTACAGGGACGTTGCCT 59.309 50.000 0.00 0.00 39.53 4.75
9345 9747 3.657350 CCGGGAAAAGGAGGCCCA 61.657 66.667 0.00 0.00 42.14 5.36
9346 9748 2.438795 CGGGAAAAGGAGGCCCAA 59.561 61.111 0.00 0.00 42.14 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.826231 TGTCACTTTGATTGAGACTTGGTTAA 59.174 34.615 0.00 0.00 0.00 2.01
1 2 6.353323 TGTCACTTTGATTGAGACTTGGTTA 58.647 36.000 0.00 0.00 0.00 2.85
2 3 5.192927 TGTCACTTTGATTGAGACTTGGTT 58.807 37.500 0.00 0.00 0.00 3.67
3 4 4.780815 TGTCACTTTGATTGAGACTTGGT 58.219 39.130 0.00 0.00 0.00 3.67
4 5 5.954296 ATGTCACTTTGATTGAGACTTGG 57.046 39.130 0.00 0.00 0.00 3.61
32 33 9.529325 CCTTTTCGTTTTCTTTTTCCTTCTTAT 57.471 29.630 0.00 0.00 0.00 1.73
33 34 8.741841 TCCTTTTCGTTTTCTTTTTCCTTCTTA 58.258 29.630 0.00 0.00 0.00 2.10
34 35 7.544566 GTCCTTTTCGTTTTCTTTTTCCTTCTT 59.455 33.333 0.00 0.00 0.00 2.52
35 36 7.033791 GTCCTTTTCGTTTTCTTTTTCCTTCT 58.966 34.615 0.00 0.00 0.00 2.85
36 37 6.809689 TGTCCTTTTCGTTTTCTTTTTCCTTC 59.190 34.615 0.00 0.00 0.00 3.46
37 38 6.693466 TGTCCTTTTCGTTTTCTTTTTCCTT 58.307 32.000 0.00 0.00 0.00 3.36
38 39 6.275494 TGTCCTTTTCGTTTTCTTTTTCCT 57.725 33.333 0.00 0.00 0.00 3.36
39 40 7.534085 AATGTCCTTTTCGTTTTCTTTTTCC 57.466 32.000 0.00 0.00 0.00 3.13
40 41 9.820229 AAAAATGTCCTTTTCGTTTTCTTTTTC 57.180 25.926 0.00 0.00 36.01 2.29
63 64 3.153130 TCCATGAAGATCCGTGCAAAAA 58.847 40.909 0.00 0.00 0.00 1.94
64 65 2.789213 TCCATGAAGATCCGTGCAAAA 58.211 42.857 0.00 0.00 0.00 2.44
65 66 2.488204 TCCATGAAGATCCGTGCAAA 57.512 45.000 0.00 0.00 0.00 3.68
66 67 2.027285 TCTTCCATGAAGATCCGTGCAA 60.027 45.455 2.50 0.00 42.78 4.08
67 68 1.554617 TCTTCCATGAAGATCCGTGCA 59.445 47.619 2.50 0.00 42.78 4.57
68 69 2.315925 TCTTCCATGAAGATCCGTGC 57.684 50.000 2.50 0.00 42.78 5.34
76 77 9.265901 ACTATATTCGTTTGATCTTCCATGAAG 57.734 33.333 0.00 0.00 40.65 3.02
80 81 9.574458 CGATACTATATTCGTTTGATCTTCCAT 57.426 33.333 0.00 0.00 0.00 3.41
81 82 8.789762 TCGATACTATATTCGTTTGATCTTCCA 58.210 33.333 0.00 0.00 36.74 3.53
82 83 9.063739 GTCGATACTATATTCGTTTGATCTTCC 57.936 37.037 0.00 0.00 36.74 3.46
83 84 9.828852 AGTCGATACTATATTCGTTTGATCTTC 57.171 33.333 0.00 0.00 36.74 2.87
84 85 9.613957 CAGTCGATACTATATTCGTTTGATCTT 57.386 33.333 0.00 0.00 36.74 2.40
85 86 9.000486 TCAGTCGATACTATATTCGTTTGATCT 58.000 33.333 0.00 0.00 36.74 2.75
86 87 9.268255 CTCAGTCGATACTATATTCGTTTGATC 57.732 37.037 0.00 0.00 36.74 2.92
87 88 9.000486 TCTCAGTCGATACTATATTCGTTTGAT 58.000 33.333 0.00 0.00 36.74 2.57
88 89 8.281194 GTCTCAGTCGATACTATATTCGTTTGA 58.719 37.037 0.00 0.00 36.74 2.69
89 90 8.068380 TGTCTCAGTCGATACTATATTCGTTTG 58.932 37.037 0.00 0.00 36.74 2.93
90 91 8.068977 GTGTCTCAGTCGATACTATATTCGTTT 58.931 37.037 0.00 0.00 36.74 3.60
91 92 7.226128 TGTGTCTCAGTCGATACTATATTCGTT 59.774 37.037 0.00 0.00 36.74 3.85
92 93 6.704937 TGTGTCTCAGTCGATACTATATTCGT 59.295 38.462 0.00 0.00 36.74 3.85
93 94 7.118422 TGTGTCTCAGTCGATACTATATTCG 57.882 40.000 0.00 0.00 33.48 3.34
94 95 7.804129 GGTTGTGTCTCAGTCGATACTATATTC 59.196 40.741 0.00 0.00 33.48 1.75
95 96 7.284716 TGGTTGTGTCTCAGTCGATACTATATT 59.715 37.037 0.00 0.00 33.48 1.28
96 97 6.771267 TGGTTGTGTCTCAGTCGATACTATAT 59.229 38.462 0.00 0.00 33.48 0.86
97 98 6.117488 TGGTTGTGTCTCAGTCGATACTATA 58.883 40.000 0.00 0.00 33.48 1.31
98 99 4.948004 TGGTTGTGTCTCAGTCGATACTAT 59.052 41.667 0.00 0.00 33.48 2.12
99 100 4.329392 TGGTTGTGTCTCAGTCGATACTA 58.671 43.478 0.00 0.00 33.48 1.82
100 101 3.154710 TGGTTGTGTCTCAGTCGATACT 58.845 45.455 0.00 0.00 35.91 2.12
101 102 3.570926 TGGTTGTGTCTCAGTCGATAC 57.429 47.619 0.00 0.00 0.00 2.24
102 103 3.572682 ACTTGGTTGTGTCTCAGTCGATA 59.427 43.478 0.00 0.00 0.00 2.92
103 104 2.365617 ACTTGGTTGTGTCTCAGTCGAT 59.634 45.455 0.00 0.00 0.00 3.59
104 105 1.754803 ACTTGGTTGTGTCTCAGTCGA 59.245 47.619 0.00 0.00 0.00 4.20
105 106 2.128035 GACTTGGTTGTGTCTCAGTCG 58.872 52.381 0.00 0.00 0.00 4.18
106 107 3.460857 AGACTTGGTTGTGTCTCAGTC 57.539 47.619 0.00 0.00 39.04 3.51
107 108 3.914426 AAGACTTGGTTGTGTCTCAGT 57.086 42.857 0.00 0.00 42.02 3.41
108 109 4.950050 ACTAAGACTTGGTTGTGTCTCAG 58.050 43.478 0.00 0.00 42.02 3.35
109 110 4.499188 CGACTAAGACTTGGTTGTGTCTCA 60.499 45.833 5.60 0.00 42.02 3.27
110 111 3.982058 CGACTAAGACTTGGTTGTGTCTC 59.018 47.826 5.60 0.00 42.02 3.36
111 112 3.243771 CCGACTAAGACTTGGTTGTGTCT 60.244 47.826 15.58 0.00 44.40 3.41
112 113 3.057734 CCGACTAAGACTTGGTTGTGTC 58.942 50.000 15.58 5.97 0.00 3.67
113 114 2.433239 ACCGACTAAGACTTGGTTGTGT 59.567 45.455 15.58 10.99 0.00 3.72
114 115 3.057734 GACCGACTAAGACTTGGTTGTG 58.942 50.000 15.58 10.49 31.86 3.33
115 116 2.288030 CGACCGACTAAGACTTGGTTGT 60.288 50.000 15.58 11.38 31.86 3.32
116 117 2.030540 TCGACCGACTAAGACTTGGTTG 60.031 50.000 11.14 11.14 35.76 3.77
117 118 2.228343 CTCGACCGACTAAGACTTGGTT 59.772 50.000 5.60 0.00 31.86 3.67
118 119 1.811359 CTCGACCGACTAAGACTTGGT 59.189 52.381 3.54 3.54 35.14 3.67
119 120 2.082231 TCTCGACCGACTAAGACTTGG 58.918 52.381 0.00 0.00 0.00 3.61
120 121 2.743126 AGTCTCGACCGACTAAGACTTG 59.257 50.000 5.58 0.00 44.57 3.16
121 122 3.056588 AGTCTCGACCGACTAAGACTT 57.943 47.619 5.58 0.00 44.57 3.01
122 123 2.766345 AGTCTCGACCGACTAAGACT 57.234 50.000 5.58 0.01 42.19 3.24
123 124 3.242381 GCTAAGTCTCGACCGACTAAGAC 60.242 52.174 7.66 0.00 43.14 3.01
124 125 2.935201 GCTAAGTCTCGACCGACTAAGA 59.065 50.000 7.66 0.00 43.14 2.10
125 126 2.676839 TGCTAAGTCTCGACCGACTAAG 59.323 50.000 7.66 0.00 43.14 2.18
126 127 2.703416 TGCTAAGTCTCGACCGACTAA 58.297 47.619 7.66 0.00 43.14 2.24
127 128 2.391616 TGCTAAGTCTCGACCGACTA 57.608 50.000 7.66 0.00 43.14 2.59
128 129 1.531423 TTGCTAAGTCTCGACCGACT 58.469 50.000 1.65 1.65 45.73 4.18
129 130 2.342910 TTTGCTAAGTCTCGACCGAC 57.657 50.000 0.00 0.00 0.00 4.79
130 131 2.295349 AGTTTTGCTAAGTCTCGACCGA 59.705 45.455 0.00 0.00 0.00 4.69
131 132 2.408704 CAGTTTTGCTAAGTCTCGACCG 59.591 50.000 0.00 0.00 0.00 4.79
132 133 3.650139 TCAGTTTTGCTAAGTCTCGACC 58.350 45.455 0.00 0.00 0.00 4.79
133 134 5.847670 AATCAGTTTTGCTAAGTCTCGAC 57.152 39.130 0.00 0.00 0.00 4.20
134 135 6.228273 CAAATCAGTTTTGCTAAGTCTCGA 57.772 37.500 0.00 0.00 38.42 4.04
159 160 8.772250 TCCTCACAATTATCCTCTTACTGAATT 58.228 33.333 0.00 0.00 0.00 2.17
160 161 8.324191 TCCTCACAATTATCCTCTTACTGAAT 57.676 34.615 0.00 0.00 0.00 2.57
161 162 7.619698 TCTCCTCACAATTATCCTCTTACTGAA 59.380 37.037 0.00 0.00 0.00 3.02
162 163 7.126061 TCTCCTCACAATTATCCTCTTACTGA 58.874 38.462 0.00 0.00 0.00 3.41
163 164 7.286546 TCTCTCCTCACAATTATCCTCTTACTG 59.713 40.741 0.00 0.00 0.00 2.74
164 165 7.358263 TCTCTCCTCACAATTATCCTCTTACT 58.642 38.462 0.00 0.00 0.00 2.24
165 166 7.589958 TCTCTCCTCACAATTATCCTCTTAC 57.410 40.000 0.00 0.00 0.00 2.34
166 167 8.789767 ATTCTCTCCTCACAATTATCCTCTTA 57.210 34.615 0.00 0.00 0.00 2.10
167 168 7.688918 ATTCTCTCCTCACAATTATCCTCTT 57.311 36.000 0.00 0.00 0.00 2.85
168 169 8.971032 ATATTCTCTCCTCACAATTATCCTCT 57.029 34.615 0.00 0.00 0.00 3.69
176 177 8.454106 CGTTTGAAAATATTCTCTCCTCACAAT 58.546 33.333 0.00 0.00 36.48 2.71
177 178 7.659799 TCGTTTGAAAATATTCTCTCCTCACAA 59.340 33.333 0.00 0.00 36.48 3.33
178 179 7.158697 TCGTTTGAAAATATTCTCTCCTCACA 58.841 34.615 0.00 0.00 36.48 3.58
179 180 7.596749 TCGTTTGAAAATATTCTCTCCTCAC 57.403 36.000 0.00 0.00 36.48 3.51
180 181 7.824289 ACATCGTTTGAAAATATTCTCTCCTCA 59.176 33.333 0.00 0.00 36.48 3.86
181 182 8.202745 ACATCGTTTGAAAATATTCTCTCCTC 57.797 34.615 0.00 0.00 36.48 3.71
182 183 9.099454 GTACATCGTTTGAAAATATTCTCTCCT 57.901 33.333 0.00 0.00 36.48 3.69
183 184 9.099454 AGTACATCGTTTGAAAATATTCTCTCC 57.901 33.333 0.00 0.00 36.48 3.71
185 186 9.099454 GGAGTACATCGTTTGAAAATATTCTCT 57.901 33.333 0.00 0.00 36.48 3.10
186 187 8.336080 GGGAGTACATCGTTTGAAAATATTCTC 58.664 37.037 0.00 0.00 36.48 2.87
187 188 8.047310 AGGGAGTACATCGTTTGAAAATATTCT 58.953 33.333 0.00 0.00 36.48 2.40
188 189 8.209917 AGGGAGTACATCGTTTGAAAATATTC 57.790 34.615 0.00 0.00 36.04 1.75
189 190 7.282450 GGAGGGAGTACATCGTTTGAAAATATT 59.718 37.037 0.00 0.00 0.00 1.28
190 191 6.766467 GGAGGGAGTACATCGTTTGAAAATAT 59.234 38.462 0.00 0.00 0.00 1.28
191 192 6.110707 GGAGGGAGTACATCGTTTGAAAATA 58.889 40.000 0.00 0.00 0.00 1.40
192 193 4.941873 GGAGGGAGTACATCGTTTGAAAAT 59.058 41.667 0.00 0.00 0.00 1.82
193 194 4.320870 GGAGGGAGTACATCGTTTGAAAA 58.679 43.478 0.00 0.00 0.00 2.29
194 195 3.615592 CGGAGGGAGTACATCGTTTGAAA 60.616 47.826 0.00 0.00 0.00 2.69
195 196 2.094390 CGGAGGGAGTACATCGTTTGAA 60.094 50.000 0.00 0.00 0.00 2.69
196 197 1.475280 CGGAGGGAGTACATCGTTTGA 59.525 52.381 0.00 0.00 0.00 2.69
197 198 1.203994 ACGGAGGGAGTACATCGTTTG 59.796 52.381 0.00 0.00 0.00 2.93
198 199 1.553706 ACGGAGGGAGTACATCGTTT 58.446 50.000 0.00 0.00 0.00 3.60
199 200 1.475682 GAACGGAGGGAGTACATCGTT 59.524 52.381 0.00 0.00 42.32 3.85
200 201 1.101331 GAACGGAGGGAGTACATCGT 58.899 55.000 0.00 0.00 0.00 3.73
201 202 0.384669 GGAACGGAGGGAGTACATCG 59.615 60.000 0.00 0.00 0.00 3.84
202 203 1.777941 AGGAACGGAGGGAGTACATC 58.222 55.000 0.00 0.00 0.00 3.06
203 204 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
204 205 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
205 206 7.449704 TCTTATATTTAGGAACGGAGGGAGTAC 59.550 40.741 0.00 0.00 0.00 2.73
206 207 7.449704 GTCTTATATTTAGGAACGGAGGGAGTA 59.550 40.741 0.00 0.00 0.00 2.59
207 208 6.267242 GTCTTATATTTAGGAACGGAGGGAGT 59.733 42.308 0.00 0.00 0.00 3.85
208 209 6.295180 GGTCTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
209 210 5.541484 GGTCTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
210 211 5.543020 AGGTCTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
211 212 6.667558 AGGTCTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
212 213 8.959705 AAAAGGTCTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
229 230 9.660180 GTTCATAGTGAAATCTCTAAAAGGTCT 57.340 33.333 0.00 0.00 38.22 3.85
230 231 9.660180 AGTTCATAGTGAAATCTCTAAAAGGTC 57.340 33.333 0.00 0.00 38.22 3.85
273 274 9.924650 AACGAATTTACACTCTAAAGTATGTCT 57.075 29.630 0.00 0.00 33.25 3.41
275 276 9.701098 TGAACGAATTTACACTCTAAAGTATGT 57.299 29.630 0.00 0.00 33.25 2.29
281 282 9.176181 GCAAAATGAACGAATTTACACTCTAAA 57.824 29.630 0.00 0.00 0.00 1.85
282 283 8.564574 AGCAAAATGAACGAATTTACACTCTAA 58.435 29.630 0.00 0.00 0.00 2.10
283 284 8.094798 AGCAAAATGAACGAATTTACACTCTA 57.905 30.769 0.00 0.00 0.00 2.43
284 285 6.970484 AGCAAAATGAACGAATTTACACTCT 58.030 32.000 0.00 0.00 0.00 3.24
285 286 6.305638 GGAGCAAAATGAACGAATTTACACTC 59.694 38.462 0.00 1.39 0.00 3.51
286 287 6.149633 GGAGCAAAATGAACGAATTTACACT 58.850 36.000 0.00 0.00 0.00 3.55
287 288 5.059221 CGGAGCAAAATGAACGAATTTACAC 59.941 40.000 0.00 0.00 0.00 2.90
288 289 5.150683 CGGAGCAAAATGAACGAATTTACA 58.849 37.500 0.00 0.00 0.00 2.41
289 290 5.151389 ACGGAGCAAAATGAACGAATTTAC 58.849 37.500 0.00 0.00 0.00 2.01
290 291 5.365403 ACGGAGCAAAATGAACGAATTTA 57.635 34.783 0.00 0.00 0.00 1.40
291 292 4.237349 ACGGAGCAAAATGAACGAATTT 57.763 36.364 0.00 0.00 0.00 1.82
292 293 3.915437 ACGGAGCAAAATGAACGAATT 57.085 38.095 0.00 0.00 0.00 2.17
293 294 6.861065 ATATACGGAGCAAAATGAACGAAT 57.139 33.333 0.00 0.00 0.00 3.34
294 295 6.982141 ACTATATACGGAGCAAAATGAACGAA 59.018 34.615 0.00 0.00 0.00 3.85
295 296 6.509656 ACTATATACGGAGCAAAATGAACGA 58.490 36.000 0.00 0.00 0.00 3.85
296 297 6.641314 AGACTATATACGGAGCAAAATGAACG 59.359 38.462 0.00 0.00 0.00 3.95
297 298 7.948278 AGACTATATACGGAGCAAAATGAAC 57.052 36.000 0.00 0.00 0.00 3.18
315 316 9.597681 TCCCTCCGTTTCTAAATAATAGACTAT 57.402 33.333 0.00 0.00 0.00 2.12
316 317 9.075678 CTCCCTCCGTTTCTAAATAATAGACTA 57.924 37.037 0.00 0.00 0.00 2.59
317 318 7.564292 ACTCCCTCCGTTTCTAAATAATAGACT 59.436 37.037 0.00 0.00 0.00 3.24
318 319 7.724287 ACTCCCTCCGTTTCTAAATAATAGAC 58.276 38.462 0.00 0.00 0.00 2.59
319 320 7.909485 ACTCCCTCCGTTTCTAAATAATAGA 57.091 36.000 0.00 0.00 0.00 1.98
322 323 9.377238 ACTATACTCCCTCCGTTTCTAAATAAT 57.623 33.333 0.00 0.00 0.00 1.28
323 324 8.636213 CACTATACTCCCTCCGTTTCTAAATAA 58.364 37.037 0.00 0.00 0.00 1.40
324 325 8.000709 TCACTATACTCCCTCCGTTTCTAAATA 58.999 37.037 0.00 0.00 0.00 1.40
325 326 6.837568 TCACTATACTCCCTCCGTTTCTAAAT 59.162 38.462 0.00 0.00 0.00 1.40
326 327 6.189859 TCACTATACTCCCTCCGTTTCTAAA 58.810 40.000 0.00 0.00 0.00 1.85
327 328 5.759059 TCACTATACTCCCTCCGTTTCTAA 58.241 41.667 0.00 0.00 0.00 2.10
328 329 5.378230 TCACTATACTCCCTCCGTTTCTA 57.622 43.478 0.00 0.00 0.00 2.10
329 330 4.246712 TCACTATACTCCCTCCGTTTCT 57.753 45.455 0.00 0.00 0.00 2.52
330 331 4.996788 TTCACTATACTCCCTCCGTTTC 57.003 45.455 0.00 0.00 0.00 2.78
331 332 5.163332 GGATTTCACTATACTCCCTCCGTTT 60.163 44.000 0.00 0.00 0.00 3.60
332 333 4.344390 GGATTTCACTATACTCCCTCCGTT 59.656 45.833 0.00 0.00 0.00 4.44
333 334 3.896272 GGATTTCACTATACTCCCTCCGT 59.104 47.826 0.00 0.00 0.00 4.69
334 335 4.153411 AGGATTTCACTATACTCCCTCCG 58.847 47.826 0.00 0.00 0.00 4.63
335 336 7.613551 TTTAGGATTTCACTATACTCCCTCC 57.386 40.000 0.00 0.00 0.00 4.30
359 360 9.392259 CCCTCCGTTTCTAAATATAAGACTTTT 57.608 33.333 0.00 0.00 0.00 2.27
360 361 8.765517 TCCCTCCGTTTCTAAATATAAGACTTT 58.234 33.333 0.00 0.00 0.00 2.66
361 362 8.315220 TCCCTCCGTTTCTAAATATAAGACTT 57.685 34.615 0.00 0.00 0.00 3.01
362 363 7.564292 ACTCCCTCCGTTTCTAAATATAAGACT 59.436 37.037 0.00 0.00 0.00 3.24
363 364 7.724287 ACTCCCTCCGTTTCTAAATATAAGAC 58.276 38.462 0.00 0.00 0.00 3.01
364 365 7.909485 ACTCCCTCCGTTTCTAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
366 367 9.991906 CAATACTCCCTCCGTTTCTAAATATAA 57.008 33.333 0.00 0.00 0.00 0.98
367 368 9.151177 ACAATACTCCCTCCGTTTCTAAATATA 57.849 33.333 0.00 0.00 0.00 0.86
368 369 7.931948 CACAATACTCCCTCCGTTTCTAAATAT 59.068 37.037 0.00 0.00 0.00 1.28
369 370 7.093201 ACACAATACTCCCTCCGTTTCTAAATA 60.093 37.037 0.00 0.00 0.00 1.40
370 371 6.113411 CACAATACTCCCTCCGTTTCTAAAT 58.887 40.000 0.00 0.00 0.00 1.40
371 372 5.012354 ACACAATACTCCCTCCGTTTCTAAA 59.988 40.000 0.00 0.00 0.00 1.85
372 373 4.529377 ACACAATACTCCCTCCGTTTCTAA 59.471 41.667 0.00 0.00 0.00 2.10
373 374 4.091549 ACACAATACTCCCTCCGTTTCTA 58.908 43.478 0.00 0.00 0.00 2.10
374 375 2.904434 ACACAATACTCCCTCCGTTTCT 59.096 45.455 0.00 0.00 0.00 2.52
375 376 3.329929 ACACAATACTCCCTCCGTTTC 57.670 47.619 0.00 0.00 0.00 2.78
376 377 3.836562 ACTACACAATACTCCCTCCGTTT 59.163 43.478 0.00 0.00 0.00 3.60
377 378 3.438183 ACTACACAATACTCCCTCCGTT 58.562 45.455 0.00 0.00 0.00 4.44
378 379 3.097342 ACTACACAATACTCCCTCCGT 57.903 47.619 0.00 0.00 0.00 4.69
379 380 6.236409 TCTATACTACACAATACTCCCTCCG 58.764 44.000 0.00 0.00 0.00 4.63
380 381 7.460071 TCTCTATACTACACAATACTCCCTCC 58.540 42.308 0.00 0.00 0.00 4.30
381 382 7.120138 GCTCTCTATACTACACAATACTCCCTC 59.880 44.444 0.00 0.00 0.00 4.30
382 383 6.943718 GCTCTCTATACTACACAATACTCCCT 59.056 42.308 0.00 0.00 0.00 4.20
383 384 6.715718 TGCTCTCTATACTACACAATACTCCC 59.284 42.308 0.00 0.00 0.00 4.30
384 385 7.662258 TCTGCTCTCTATACTACACAATACTCC 59.338 40.741 0.00 0.00 0.00 3.85
385 386 8.610248 TCTGCTCTCTATACTACACAATACTC 57.390 38.462 0.00 0.00 0.00 2.59
386 387 9.008965 CATCTGCTCTCTATACTACACAATACT 57.991 37.037 0.00 0.00 0.00 2.12
396 397 4.277174 CGTCCAACATCTGCTCTCTATACT 59.723 45.833 0.00 0.00 0.00 2.12
399 400 2.223923 GCGTCCAACATCTGCTCTCTAT 60.224 50.000 0.00 0.00 0.00 1.98
460 461 9.152595 GAGAAAGGTGTTTATCTTTACTACCAG 57.847 37.037 0.00 0.00 37.37 4.00
614 621 0.382272 CGCACGCGCAGATTCTATTG 60.382 55.000 5.73 0.00 38.40 1.90
617 624 2.158330 CACGCACGCGCAGATTCTA 61.158 57.895 12.02 0.00 44.19 2.10
637 644 2.031870 GGATTTTGGCTGGGGATACAC 58.968 52.381 0.00 0.00 44.44 2.90
638 645 1.409521 CGGATTTTGGCTGGGGATACA 60.410 52.381 0.00 0.00 39.74 2.29
639 646 1.318576 CGGATTTTGGCTGGGGATAC 58.681 55.000 0.00 0.00 0.00 2.24
640 647 0.467290 GCGGATTTTGGCTGGGGATA 60.467 55.000 0.00 0.00 0.00 2.59
641 648 1.758122 GCGGATTTTGGCTGGGGAT 60.758 57.895 0.00 0.00 0.00 3.85
642 649 2.362375 GCGGATTTTGGCTGGGGA 60.362 61.111 0.00 0.00 0.00 4.81
644 651 3.825611 CGGCGGATTTTGGCTGGG 61.826 66.667 0.00 0.00 31.88 4.45
645 652 2.063541 GATCGGCGGATTTTGGCTGG 62.064 60.000 7.21 0.00 36.21 4.85
646 653 1.356624 GATCGGCGGATTTTGGCTG 59.643 57.895 7.21 0.00 36.88 4.85
647 654 1.823899 GGATCGGCGGATTTTGGCT 60.824 57.895 7.21 0.00 31.51 4.75
728 759 2.032550 TCGTTAGGAGCCGTTAATCTCG 59.967 50.000 0.00 0.00 0.00 4.04
808 875 1.305201 TTCTTTCCTTTTCGTGCGCT 58.695 45.000 9.73 0.00 0.00 5.92
809 876 2.113910 TTTCTTTCCTTTTCGTGCGC 57.886 45.000 0.00 0.00 0.00 6.09
810 877 5.116528 GGTATTTTTCTTTCCTTTTCGTGCG 59.883 40.000 0.00 0.00 0.00 5.34
939 1008 1.457455 GAGGAGGCAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
940 1009 1.938596 AGAGGAGGCAGGAGGAGGA 60.939 63.158 0.00 0.00 0.00 3.71
1342 1519 2.298661 GGGGAAAGCGGGAAGGAGA 61.299 63.158 0.00 0.00 0.00 3.71
1353 1530 0.105039 CGAATCTCGGGAGGGGAAAG 59.895 60.000 0.00 0.00 36.00 2.62
1356 1533 2.687902 ACGAATCTCGGGAGGGGA 59.312 61.111 0.00 0.00 45.59 4.81
1436 1618 2.592861 CCTAGCATGCCGGGAAGC 60.593 66.667 15.98 15.98 0.00 3.86
1438 1620 1.858739 AAACCCTAGCATGCCGGGAA 61.859 55.000 36.40 10.95 40.55 3.97
1439 1621 0.983905 TAAACCCTAGCATGCCGGGA 60.984 55.000 36.40 19.60 40.55 5.14
1441 1623 1.166531 GCTAAACCCTAGCATGCCGG 61.167 60.000 15.66 15.26 40.14 6.13
1442 1624 0.179045 AGCTAAACCCTAGCATGCCG 60.179 55.000 15.66 5.78 42.68 5.69
1443 1625 2.058593 AAGCTAAACCCTAGCATGCC 57.941 50.000 15.66 0.00 42.68 4.40
1444 1626 4.073293 TCTAAGCTAAACCCTAGCATGC 57.927 45.455 10.51 10.51 42.68 4.06
1445 1627 5.049129 GCAATCTAAGCTAAACCCTAGCATG 60.049 44.000 6.54 0.00 42.68 4.06
1446 1628 5.066593 GCAATCTAAGCTAAACCCTAGCAT 58.933 41.667 6.54 0.00 42.68 3.79
1470 1653 2.337879 AAACTGGAAGCAGGCGGTCA 62.338 55.000 0.00 0.00 37.60 4.02
1475 1658 1.581447 CCGAAAACTGGAAGCAGGC 59.419 57.895 0.00 0.00 37.60 4.85
1485 1668 1.268625 GGGTCAAAATCGCCGAAAACT 59.731 47.619 0.00 0.00 0.00 2.66
1490 1673 1.738830 GTCGGGTCAAAATCGCCGA 60.739 57.895 0.00 0.00 0.00 5.54
1491 1674 2.746803 GGTCGGGTCAAAATCGCCG 61.747 63.158 0.00 0.00 0.00 6.46
1493 1676 0.953960 ACTGGTCGGGTCAAAATCGC 60.954 55.000 0.00 0.00 0.00 4.58
1494 1677 0.796312 CACTGGTCGGGTCAAAATCG 59.204 55.000 0.00 0.00 0.00 3.34
1495 1678 0.521735 GCACTGGTCGGGTCAAAATC 59.478 55.000 0.00 0.00 0.00 2.17
1499 1682 0.981183 AATAGCACTGGTCGGGTCAA 59.019 50.000 0.00 0.00 0.00 3.18
1531 1714 3.005791 CCTTTTTCCTCGTGAAATTGGCT 59.994 43.478 4.24 0.00 42.38 4.75
1545 1728 3.005472 GCTCCAGTTAACACCCTTTTTCC 59.995 47.826 8.61 0.00 0.00 3.13
1551 1735 0.475828 AGGGCTCCAGTTAACACCCT 60.476 55.000 8.61 11.99 42.97 4.34
1559 1745 4.455070 AAAACTTTAGAGGGCTCCAGTT 57.545 40.909 0.00 0.00 0.00 3.16
1612 1802 7.151976 CCACATCCATATCGATACAAACTACA 58.848 38.462 7.41 0.00 0.00 2.74
1622 1812 3.340928 CACATGCCACATCCATATCGAT 58.659 45.455 2.16 2.16 0.00 3.59
1657 1857 4.574674 AGCCCATGTGTTATTCTTCAGA 57.425 40.909 0.00 0.00 0.00 3.27
1660 1860 6.995091 AGATCTAAGCCCATGTGTTATTCTTC 59.005 38.462 0.00 0.00 0.00 2.87
1666 1866 4.769688 CACAGATCTAAGCCCATGTGTTA 58.230 43.478 0.00 0.00 34.71 2.41
1673 1873 1.908619 TCAAGCACAGATCTAAGCCCA 59.091 47.619 13.29 0.00 0.00 5.36
1680 1880 8.754080 AGTATAACTAGTTTCAAGCACAGATCT 58.246 33.333 14.49 0.00 0.00 2.75
1681 1881 8.812329 CAGTATAACTAGTTTCAAGCACAGATC 58.188 37.037 14.49 0.00 0.00 2.75
1682 1882 7.766278 CCAGTATAACTAGTTTCAAGCACAGAT 59.234 37.037 14.49 0.00 0.00 2.90
1683 1883 7.039293 TCCAGTATAACTAGTTTCAAGCACAGA 60.039 37.037 14.49 0.00 0.00 3.41
1684 1884 7.063544 GTCCAGTATAACTAGTTTCAAGCACAG 59.936 40.741 14.49 0.98 0.00 3.66
1685 1885 6.872020 GTCCAGTATAACTAGTTTCAAGCACA 59.128 38.462 14.49 0.00 0.00 4.57
1686 1886 6.872020 TGTCCAGTATAACTAGTTTCAAGCAC 59.128 38.462 14.49 4.16 0.00 4.40
1687 1887 6.999950 TGTCCAGTATAACTAGTTTCAAGCA 58.000 36.000 14.49 0.00 0.00 3.91
1711 1911 6.369615 ACGTAACGCACAGGATAATAAAAGTT 59.630 34.615 0.00 0.00 0.00 2.66
1716 1916 5.409211 TCAACGTAACGCACAGGATAATAA 58.591 37.500 0.00 0.00 0.00 1.40
1732 1937 6.218019 AGTGTAGCTTACAAACATCAACGTA 58.782 36.000 0.00 0.00 40.93 3.57
1768 1973 5.245977 CACACTCCCCTCCAATACAAAAATT 59.754 40.000 0.00 0.00 0.00 1.82
1777 1983 0.178861 AGACCACACTCCCCTCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
1779 1985 0.716591 ATAGACCACACTCCCCTCCA 59.283 55.000 0.00 0.00 0.00 3.86
1815 2021 9.747898 TGTGTTGTATTCTAATTTCTACCCAAT 57.252 29.630 0.00 0.00 0.00 3.16
1866 2075 7.608308 AGAGCTTCAGTTATCTAGCAAAAAG 57.392 36.000 0.00 0.00 36.11 2.27
1917 2126 6.106648 AGTGCAGCTCAATGATATAAGCTA 57.893 37.500 0.00 0.00 42.99 3.32
2036 2248 2.819608 GGATGAGCTTAAACAGGTTGCA 59.180 45.455 0.00 0.00 31.44 4.08
2084 2296 6.530181 GGAGATAAACCCTGCGTAAAAATTTG 59.470 38.462 0.00 0.00 0.00 2.32
2334 2589 4.032960 TCACCATGGACAGCTAACAATT 57.967 40.909 21.47 0.00 0.00 2.32
2347 2602 2.176364 AGGGGATCAGAATTCACCATGG 59.824 50.000 11.19 11.19 39.28 3.66
2359 2614 7.739995 TCATCCATTAATACTAGGGGATCAG 57.260 40.000 0.00 0.00 33.04 2.90
2374 2629 9.070179 CATCAAAAGGACATACATCATCCATTA 57.930 33.333 0.00 0.00 34.73 1.90
2390 2645 3.565307 AGCAAGTTGGACATCAAAAGGA 58.435 40.909 4.75 0.00 37.08 3.36
2402 2657 2.684881 ACTGTGTTCTGAAGCAAGTTGG 59.315 45.455 4.75 0.00 0.00 3.77
2483 2745 6.041409 CAGAGGATATCAGGTAGTGACAATGT 59.959 42.308 4.83 0.00 38.28 2.71
2491 2753 4.290093 TGTTGCAGAGGATATCAGGTAGT 58.710 43.478 4.83 0.00 0.00 2.73
2493 2755 5.894298 AATGTTGCAGAGGATATCAGGTA 57.106 39.130 4.83 0.00 0.00 3.08
2523 2785 2.441750 AGGTACAAAAGCAGTGAGGGAA 59.558 45.455 0.00 0.00 0.00 3.97
2524 2786 2.054799 AGGTACAAAAGCAGTGAGGGA 58.945 47.619 0.00 0.00 0.00 4.20
2526 2788 2.851195 ACAGGTACAAAAGCAGTGAGG 58.149 47.619 0.00 0.00 0.00 3.86
2527 2789 4.130118 AGAACAGGTACAAAAGCAGTGAG 58.870 43.478 0.00 0.00 0.00 3.51
2528 2790 4.150897 AGAACAGGTACAAAAGCAGTGA 57.849 40.909 0.00 0.00 0.00 3.41
2553 2815 3.624861 CCCTGAACAGAAGAATCCAATCG 59.375 47.826 3.19 0.00 0.00 3.34
2570 2832 2.632996 AGACGATCAAACTCAACCCTGA 59.367 45.455 0.00 0.00 0.00 3.86
2637 2899 2.902608 TCCTCATGGTGGTCTACTTGT 58.097 47.619 0.00 0.00 34.23 3.16
2643 2905 4.971282 TCATTCTTATCCTCATGGTGGTCT 59.029 41.667 0.00 0.00 34.23 3.85
2652 2914 7.230747 TGGTTCTTGTTTCATTCTTATCCTCA 58.769 34.615 0.00 0.00 0.00 3.86
2727 2989 1.609635 TTACATCAGCGGGCGGAGAA 61.610 55.000 0.00 0.00 0.00 2.87
2759 3021 9.372369 CCAACAACTAAAAGGAAATTACACAAA 57.628 29.630 0.00 0.00 0.00 2.83
2782 3044 8.474025 CCAGCACCTTAATACAAATTTATCCAA 58.526 33.333 0.00 0.00 0.00 3.53
2815 3077 6.128849 GGAATTCGTCAAAAATGTTCACATGG 60.129 38.462 0.00 0.00 36.56 3.66
2866 3128 8.479313 TGAGACAGCATACTAAACAAATACAG 57.521 34.615 0.00 0.00 0.00 2.74
2868 3130 8.383619 CACTGAGACAGCATACTAAACAAATAC 58.616 37.037 0.00 0.00 34.37 1.89
2869 3131 8.311109 TCACTGAGACAGCATACTAAACAAATA 58.689 33.333 0.00 0.00 34.37 1.40
2870 3132 7.161404 TCACTGAGACAGCATACTAAACAAAT 58.839 34.615 0.00 0.00 34.37 2.32
2873 3135 5.722021 TCACTGAGACAGCATACTAAACA 57.278 39.130 0.00 0.00 34.37 2.83
2875 3137 6.155221 AGGAATCACTGAGACAGCATACTAAA 59.845 38.462 0.00 0.00 34.37 1.85
2876 3138 5.658634 AGGAATCACTGAGACAGCATACTAA 59.341 40.000 0.00 0.00 34.37 2.24
2878 3140 4.029520 AGGAATCACTGAGACAGCATACT 58.970 43.478 0.00 0.00 34.37 2.12
2879 3141 4.118410 CAGGAATCACTGAGACAGCATAC 58.882 47.826 0.00 0.00 40.97 2.39
2883 3145 2.344950 CACAGGAATCACTGAGACAGC 58.655 52.381 5.89 0.00 40.97 4.40
2884 3146 2.301296 ACCACAGGAATCACTGAGACAG 59.699 50.000 5.89 0.00 40.97 3.51
2885 3147 2.300152 GACCACAGGAATCACTGAGACA 59.700 50.000 5.89 0.00 40.97 3.41
2886 3148 2.300152 TGACCACAGGAATCACTGAGAC 59.700 50.000 5.89 0.16 40.97 3.36
2982 3244 6.233434 TCAATGAAAGTTGCTAGATCACAGT 58.767 36.000 0.00 0.00 0.00 3.55
3028 3290 5.563592 TCTGAACAACTGAATCCACATCAT 58.436 37.500 0.00 0.00 0.00 2.45
3037 3299 9.512588 AACTTAGATCAATCTGAACAACTGAAT 57.487 29.630 2.72 0.00 37.76 2.57
3048 3310 7.601886 ACAGACACAGAAACTTAGATCAATCTG 59.398 37.037 2.72 0.00 40.01 2.90
3058 3320 5.601313 AGGTCCTAACAGACACAGAAACTTA 59.399 40.000 0.00 0.00 38.59 2.24
3064 3326 3.527507 AGAGGTCCTAACAGACACAGA 57.472 47.619 0.00 0.00 38.59 3.41
3065 3327 4.608948 AAAGAGGTCCTAACAGACACAG 57.391 45.455 0.00 0.00 38.59 3.66
3087 3349 6.630203 ACCTAATATTGTACAGGTGAACCA 57.370 37.500 6.81 0.00 39.93 3.67
3117 3379 3.181488 CCATGAACTGTTCAACTGCACAA 60.181 43.478 25.26 0.81 43.95 3.33
3184 3447 0.462375 ACGGGCAAAACAAGGAAACC 59.538 50.000 0.00 0.00 0.00 3.27
3194 3457 5.354792 GGTGTATTGTATTAGACGGGCAAAA 59.645 40.000 0.00 0.00 0.00 2.44
3201 3464 4.689071 TGCCAGGTGTATTGTATTAGACG 58.311 43.478 0.00 0.00 0.00 4.18
3214 3477 4.980573 TGAATAACTTAGTTGCCAGGTGT 58.019 39.130 8.00 0.00 0.00 4.16
3241 3504 2.910319 TGCCTGCCTCTTCCTAACTTAA 59.090 45.455 0.00 0.00 0.00 1.85
3285 3551 3.367395 GGCAACTGAAATCCTAACCAAGC 60.367 47.826 0.00 0.00 0.00 4.01
3413 3679 4.017808 GCTCCTTAGACTACTCTGTTGGA 58.982 47.826 0.00 0.00 0.00 3.53
3427 3693 5.070685 ACCAAAAAGTACTTGGCTCCTTAG 58.929 41.667 9.34 0.00 46.20 2.18
3463 3729 6.821665 GTCCTATAATAACCAGTGTTGCTTGA 59.178 38.462 0.00 0.00 35.87 3.02
3477 3743 5.427157 TGGTGCACCAGAAGTCCTATAATAA 59.573 40.000 34.74 5.41 42.01 1.40
3495 3761 0.819259 GCTCCTGAACAAGTGGTGCA 60.819 55.000 0.00 0.00 39.36 4.57
3527 3793 2.029020 GGAAGTCCAGGGTTTTCATTGC 60.029 50.000 0.00 0.00 35.64 3.56
3889 4155 0.171007 CACAAATTACCTGCCTGCCG 59.829 55.000 0.00 0.00 0.00 5.69
4138 4405 1.260561 GTTGTCACAACGCCACTAGTG 59.739 52.381 16.34 16.34 0.00 2.74
4401 4668 1.807814 ATTTCCCCGAGGACTAGCAT 58.192 50.000 0.00 0.00 43.90 3.79
4420 4687 5.005094 CCAATTGTACGGGTAGGAAGAAAA 58.995 41.667 4.43 0.00 0.00 2.29
4438 4705 5.544650 CCTTCAGCAAAATCTGAACCAATT 58.455 37.500 2.43 0.00 45.21 2.32
4456 4723 0.038166 GATGGGGTGAACTGCCTTCA 59.962 55.000 0.00 0.00 36.46 3.02
4499 4766 1.295423 GGCCGGACTCAAGCAGTAA 59.705 57.895 5.05 0.00 34.41 2.24
4542 4809 2.972625 TGCCACCTTCACTATTTCTCG 58.027 47.619 0.00 0.00 0.00 4.04
4568 4835 6.408548 GGAACAGGAGGAACATCATCATTAGA 60.409 42.308 0.00 0.00 0.00 2.10
4676 4943 6.242474 TGGTTTCCCAGCAACAGATTGTTG 62.242 45.833 15.61 15.61 46.91 3.33
4691 4958 1.207811 CATGGATTGCCTTGGTTTCCC 59.792 52.381 0.00 0.00 36.08 3.97
4694 4961 1.901833 GGACATGGATTGCCTTGGTTT 59.098 47.619 0.00 0.00 42.16 3.27
4782 5049 5.382616 CATTCAGATCAGAATCATGGGGAA 58.617 41.667 10.17 0.00 36.13 3.97
4863 5130 5.492895 TGCCTAAATCCTGATGAAACGTAA 58.507 37.500 0.00 0.00 0.00 3.18
5174 5441 6.713903 TCATCTTTGAATCAAACTTCTGCTCT 59.286 34.615 4.03 0.00 0.00 4.09
5224 5491 6.703165 GGTTGATTCAACTTTCTGCTCAAATT 59.297 34.615 24.60 0.00 43.14 1.82
5256 5523 7.983307 ACTGAAGAATTGATAACATTCTGCTC 58.017 34.615 2.96 0.00 35.12 4.26
5339 5606 5.749462 CCCTTCTTTTCAGTATCACTGGAT 58.251 41.667 6.48 0.00 45.94 3.41
5376 5643 6.783708 AAAACCAGTGTTGTTATTTGAGGA 57.216 33.333 0.00 0.00 34.13 3.71
5489 5756 5.452636 GGAACCAAACATAAAAGGTGAAGCA 60.453 40.000 0.00 0.00 33.93 3.91
5511 5778 2.171237 CTGATGTACTGGATGGCTTGGA 59.829 50.000 0.00 0.00 0.00 3.53
5550 5817 2.034607 TGGTTTTTACACCAGCGGC 58.965 52.632 0.00 0.00 42.27 6.53
5747 6115 7.170965 TGAAAGAAGCTCCTCAAGTGAATAAT 58.829 34.615 0.00 0.00 0.00 1.28
5860 6228 5.835113 ACACAAGCACTTTCACTACAATT 57.165 34.783 0.00 0.00 0.00 2.32
5929 6297 9.493206 GTAGTCTCGTTCTTCTTAGAATTACTG 57.507 37.037 0.00 0.00 42.14 2.74
5953 6321 4.948341 ACTGTGACATTAGGTGTGTGTA 57.052 40.909 0.00 0.00 42.36 2.90
5957 6325 5.047590 TGGTAGTACTGTGACATTAGGTGTG 60.048 44.000 5.39 0.00 42.36 3.82
5992 6361 7.340999 GCTTTACCCCTATTTAACTGATTTGGA 59.659 37.037 0.00 0.00 0.00 3.53
6055 6427 9.974980 ATGGACGACACTTAAAAACAATATTTT 57.025 25.926 0.00 0.00 36.52 1.82
6065 6437 8.255206 AGATGTATACATGGACGACACTTAAAA 58.745 33.333 22.93 0.00 36.57 1.52
6069 6441 5.359860 TGAGATGTATACATGGACGACACTT 59.640 40.000 22.93 0.00 36.57 3.16
6104 6476 2.243478 AGAGAGTAGGGCAGTGATGAGA 59.757 50.000 0.00 0.00 0.00 3.27
6111 6483 0.413832 TTCCCAGAGAGTAGGGCAGT 59.586 55.000 0.00 0.00 45.07 4.40
6131 6503 1.826385 ATTGGCCTCGGAAAACTCTG 58.174 50.000 3.32 0.00 0.00 3.35
6132 6504 3.244770 TGTTATTGGCCTCGGAAAACTCT 60.245 43.478 3.32 0.00 0.00 3.24
6139 6511 6.722590 TCTTACTATATGTTATTGGCCTCGGA 59.277 38.462 3.32 0.00 0.00 4.55
6161 6533 3.944055 ACTACAATGCTCACTCGTCTT 57.056 42.857 0.00 0.00 0.00 3.01
6202 6575 8.903820 CCCTTATCTTTCAAACTATACCCTTTG 58.096 37.037 0.00 0.00 0.00 2.77
6203 6576 7.560262 GCCCTTATCTTTCAAACTATACCCTTT 59.440 37.037 0.00 0.00 0.00 3.11
6258 6632 3.647636 TGGGTTGTCCTCCAATTTTTCA 58.352 40.909 0.00 0.00 35.02 2.69
6259 6633 4.283212 TGATGGGTTGTCCTCCAATTTTTC 59.717 41.667 0.00 0.00 36.54 2.29
6332 6706 7.896383 ACTGCCTATGAAAAATAAATGCCTA 57.104 32.000 0.00 0.00 0.00 3.93
6400 6774 1.372838 CGTGGCACTGGAAACACACA 61.373 55.000 16.72 0.00 34.31 3.72
6401 6775 1.092921 TCGTGGCACTGGAAACACAC 61.093 55.000 16.72 0.00 35.60 3.82
6415 6789 2.114670 AATGATGCGGGCTTCGTGG 61.115 57.895 2.50 0.00 41.72 4.94
6453 6827 0.041684 CCTTCCCTTCCATTGCCCTT 59.958 55.000 0.00 0.00 0.00 3.95
6455 6829 0.396278 CTCCTTCCCTTCCATTGCCC 60.396 60.000 0.00 0.00 0.00 5.36
6654 7028 3.541632 CGGCAATGGTAGTTAATGGAGT 58.458 45.455 0.00 0.00 0.00 3.85
6716 7090 6.899393 TTGATAGTTGAAAATGCAGGAACT 57.101 33.333 0.00 0.00 43.88 3.01
6729 7103 4.158394 GCTGGAGCCAAAATTGATAGTTGA 59.842 41.667 0.00 0.00 34.31 3.18
6754 7128 1.961793 TGGTGTTGCTACTGTTGGAC 58.038 50.000 0.00 0.00 0.00 4.02
6761 7135 3.118038 TCTCTGGTTTTGGTGTTGCTACT 60.118 43.478 0.00 0.00 0.00 2.57
6768 7142 1.208535 TGTCGTCTCTGGTTTTGGTGT 59.791 47.619 0.00 0.00 0.00 4.16
6843 7217 3.308473 GGGGCTTTAGACTTGGATTCAGT 60.308 47.826 0.00 0.00 0.00 3.41
6881 7255 3.202818 AGGTATTCAGATTGGATGGTGCA 59.797 43.478 0.00 0.00 0.00 4.57
6885 7259 4.310769 GACGAGGTATTCAGATTGGATGG 58.689 47.826 0.00 0.00 0.00 3.51
6902 7276 8.066595 GTGATATTTGATGAGAAAATGGACGAG 58.933 37.037 0.00 0.00 0.00 4.18
6903 7277 7.552330 TGTGATATTTGATGAGAAAATGGACGA 59.448 33.333 0.00 0.00 0.00 4.20
7259 7633 1.275573 GGGAACGAGGAGCTAAACTGT 59.724 52.381 0.00 0.00 0.00 3.55
7297 7671 4.393155 ATGACGAAGCTGCCGCCA 62.393 61.111 8.47 4.66 36.60 5.69
7298 7672 3.567797 GATGACGAAGCTGCCGCC 61.568 66.667 8.47 0.00 36.60 6.13
7382 7756 1.476471 CCAGGACCAGATGAAGATGCC 60.476 57.143 0.00 0.00 0.00 4.40
7566 7943 3.519510 CCTCCAAAAGTCATAGTCCCAGA 59.480 47.826 0.00 0.00 0.00 3.86
7593 7970 0.835941 CCAGGTCCAGATGAGGAAGG 59.164 60.000 0.00 0.00 39.92 3.46
7644 8021 1.997256 TTACCAAACACAGGCCCGGT 61.997 55.000 0.00 0.00 0.00 5.28
7759 8136 3.797256 GCTGAACATACTTGTACTAGCCG 59.203 47.826 4.10 0.00 34.06 5.52
8087 8464 3.305516 GGGGGTGCTGCTTGGTTG 61.306 66.667 0.00 0.00 0.00 3.77
8136 8513 1.133976 ACTAGCTGGCTGCCCAAATAG 60.134 52.381 17.53 14.59 41.58 1.73
8171 8548 2.711009 ACTAGCTGGCTGCCCAAATATA 59.289 45.455 17.53 0.00 41.58 0.86
8172 8549 1.496429 ACTAGCTGGCTGCCCAAATAT 59.504 47.619 17.53 0.00 41.58 1.28
8348 8725 1.227823 CCTGTTGGACTTGTCGCCA 60.228 57.895 0.00 0.00 34.57 5.69
8412 8789 5.163972 CCACCATGTAATGCAAAATTGAACG 60.164 40.000 0.00 0.00 44.97 3.95
8490 8870 3.648339 ATGGCCATACGAAATCATTGC 57.352 42.857 19.18 0.00 0.00 3.56
8492 8872 5.129634 TGTGTATGGCCATACGAAATCATT 58.870 37.500 38.13 11.38 44.97 2.57
8542 8922 6.040391 GCCTCCAGATAGATATATGTCCTGTC 59.960 46.154 0.00 0.00 0.00 3.51
8580 8960 4.835615 ACTCTACACTGACCTTGACTTGAT 59.164 41.667 0.00 0.00 0.00 2.57
8585 8965 3.119424 GGCTACTCTACACTGACCTTGAC 60.119 52.174 0.00 0.00 0.00 3.18
8669 9049 4.634004 GCATACTACTACAACATGTGCCAA 59.366 41.667 0.00 0.00 0.00 4.52
8732 9112 8.547967 TCAGACAAAATTACACCTTCAGATAC 57.452 34.615 0.00 0.00 0.00 2.24
8733 9113 8.375506 ACTCAGACAAAATTACACCTTCAGATA 58.624 33.333 0.00 0.00 0.00 1.98
8983 9365 6.480763 TGGGTGCTGAGACAAGAATAATAAA 58.519 36.000 0.00 0.00 0.00 1.40
8992 9374 0.954449 CTGCTGGGTGCTGAGACAAG 60.954 60.000 0.00 0.00 42.27 3.16
9001 9383 2.031674 AAAACAAGCCTGCTGGGTGC 62.032 55.000 15.62 0.00 44.35 5.01
9002 9384 0.249573 CAAAACAAGCCTGCTGGGTG 60.250 55.000 15.62 11.56 44.35 4.61
9053 9435 1.734465 GCGTTGACAGATGAAGGGAAG 59.266 52.381 0.00 0.00 0.00 3.46
9097 9479 1.985662 ATAAGGACGGACGGGCACA 60.986 57.895 0.00 0.00 0.00 4.57
9101 9483 1.067582 GCTCATAAGGACGGACGGG 59.932 63.158 0.00 0.00 0.00 5.28
9130 9528 3.466836 TGGATAACACAGAATGGCGATC 58.533 45.455 0.00 0.00 43.62 3.69
9138 9536 2.093181 CGTGGGGATGGATAACACAGAA 60.093 50.000 0.00 0.00 32.58 3.02
9174 9574 2.555227 GGGTCAAGCAGATGGGAGAAAA 60.555 50.000 0.00 0.00 0.00 2.29
9203 9603 0.108662 CCGATTGCTGCCTTTTTCCC 60.109 55.000 0.00 0.00 0.00 3.97
9213 9613 0.514255 CGTATGGATGCCGATTGCTG 59.486 55.000 0.00 0.00 42.00 4.41
9240 9640 2.550978 GGCATGCTACGTGACTGTAAT 58.449 47.619 18.92 0.00 0.00 1.89
9241 9641 1.404986 GGGCATGCTACGTGACTGTAA 60.405 52.381 18.92 0.00 0.00 2.41
9242 9642 0.174845 GGGCATGCTACGTGACTGTA 59.825 55.000 18.92 0.00 0.00 2.74
9243 9643 1.079127 GGGCATGCTACGTGACTGT 60.079 57.895 18.92 0.00 0.00 3.55
9354 9756 1.280457 GGAGGGAAGAAGAAGAGCCA 58.720 55.000 0.00 0.00 0.00 4.75
9359 9761 1.981495 ACACAGGGAGGGAAGAAGAAG 59.019 52.381 0.00 0.00 0.00 2.85
9360 9762 1.699634 CACACAGGGAGGGAAGAAGAA 59.300 52.381 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.