Multiple sequence alignment - TraesCS5A01G425600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G425600 chr5A 100.000 2954 0 0 1 2954 611129008 611126055 0.000000e+00 5456.0
1 TraesCS5A01G425600 chr5B 93.766 1171 50 8 943 2099 603831857 603830696 0.000000e+00 1736.0
2 TraesCS5A01G425600 chr5B 87.437 398 36 8 2557 2954 166680813 166681196 2.090000e-121 446.0
3 TraesCS5A01G425600 chr5B 82.149 549 43 23 425 952 603832401 603831887 1.270000e-113 420.0
4 TraesCS5A01G425600 chr5B 82.421 347 40 18 2169 2502 117891753 117891415 1.730000e-72 283.0
5 TraesCS5A01G425600 chr5B 87.678 211 14 8 357 567 603873908 603873710 4.920000e-58 235.0
6 TraesCS5A01G425600 chrUn 95.293 1041 34 3 943 1968 68155066 68156106 0.000000e+00 1637.0
7 TraesCS5A01G425600 chrUn 83.871 589 31 22 382 952 68154494 68155036 1.220000e-138 503.0
8 TraesCS5A01G425600 chrUn 86.939 245 17 5 2557 2801 424516592 424516821 8.120000e-66 261.0
9 TraesCS5A01G425600 chr7A 93.692 856 34 6 2101 2954 95945888 95946725 0.000000e+00 1264.0
10 TraesCS5A01G425600 chr7A 95.349 43 2 0 2101 2143 452307132 452307090 5.280000e-08 69.4
11 TraesCS5A01G425600 chr3A 88.206 407 26 11 2101 2502 102845796 102845407 1.600000e-127 466.0
12 TraesCS5A01G425600 chr3A 86.939 245 16 6 2557 2801 102844779 102844551 8.120000e-66 261.0
13 TraesCS5A01G425600 chr2A 88.804 393 24 10 2113 2502 191910426 191910051 5.770000e-127 464.0
14 TraesCS5A01G425600 chr2A 85.772 246 19 9 2557 2801 191909424 191909194 2.270000e-61 246.0
15 TraesCS5A01G425600 chr1B 88.041 393 28 9 2113 2502 4458901 4459277 5.810000e-122 448.0
16 TraesCS5A01G425600 chr2B 87.563 394 27 12 2113 2502 188443612 188443987 1.260000e-118 436.0
17 TraesCS5A01G425600 chr2B 86.531 245 18 5 2557 2801 188444713 188444942 3.780000e-64 255.0
18 TraesCS5A01G425600 chr2B 91.304 46 3 1 2092 2136 792770359 792770404 8.840000e-06 62.1
19 TraesCS5A01G425600 chr2D 85.536 401 39 13 2107 2500 201437543 201437155 4.590000e-108 401.0
20 TraesCS5A01G425600 chr2D 84.697 379 46 11 2093 2467 9860092 9860462 4.650000e-98 368.0
21 TraesCS5A01G425600 chr2D 80.941 404 37 17 2557 2954 201436607 201436238 1.730000e-72 283.0
22 TraesCS5A01G425600 chr2D 84.774 243 16 8 2557 2795 9861029 9861254 1.070000e-54 224.0
23 TraesCS5A01G425600 chr6D 86.061 330 30 7 2557 2886 291713658 291713345 1.010000e-89 340.0
24 TraesCS5A01G425600 chr6D 91.304 46 2 2 2093 2136 291696287 291696242 8.840000e-06 62.1
25 TraesCS5A01G425600 chr3D 86.061 330 30 12 2557 2886 92740030 92739717 1.010000e-89 340.0
26 TraesCS5A01G425600 chr1A 85.238 210 14 6 2594 2801 74734203 74734397 1.800000e-47 200.0
27 TraesCS5A01G425600 chr1A 88.462 52 3 3 2093 2142 565273372 565273422 3.180000e-05 60.2
28 TraesCS5A01G425600 chr4A 77.247 356 28 13 2557 2886 408060233 408059905 3.050000e-35 159.0
29 TraesCS5A01G425600 chr3B 91.304 46 3 1 2092 2136 762387104 762387059 8.840000e-06 62.1
30 TraesCS5A01G425600 chr7B 86.207 58 5 3 2086 2143 355849454 355849400 3.180000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G425600 chr5A 611126055 611129008 2953 True 5456.0 5456 100.0000 1 2954 1 chr5A.!!$R1 2953
1 TraesCS5A01G425600 chr5B 603830696 603832401 1705 True 1078.0 1736 87.9575 425 2099 2 chr5B.!!$R3 1674
2 TraesCS5A01G425600 chrUn 68154494 68156106 1612 False 1070.0 1637 89.5820 382 1968 2 chrUn.!!$F2 1586
3 TraesCS5A01G425600 chr7A 95945888 95946725 837 False 1264.0 1264 93.6920 2101 2954 1 chr7A.!!$F1 853
4 TraesCS5A01G425600 chr3A 102844551 102845796 1245 True 363.5 466 87.5725 2101 2801 2 chr3A.!!$R1 700
5 TraesCS5A01G425600 chr2A 191909194 191910426 1232 True 355.0 464 87.2880 2113 2801 2 chr2A.!!$R1 688
6 TraesCS5A01G425600 chr2B 188443612 188444942 1330 False 345.5 436 87.0470 2113 2801 2 chr2B.!!$F2 688
7 TraesCS5A01G425600 chr2D 201436238 201437543 1305 True 342.0 401 83.2385 2107 2954 2 chr2D.!!$R1 847
8 TraesCS5A01G425600 chr2D 9860092 9861254 1162 False 296.0 368 84.7355 2093 2795 2 chr2D.!!$F1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 257 0.036010 ACTCAGCCCATTTGGACGAG 60.036 55.0 0.00 3.65 37.39 4.18 F
742 756 0.101399 CCATCGGATCGGATCGGATC 59.899 60.0 28.08 26.93 44.42 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 1997 0.031178 GCTGCTCTTGTTGGTGTTGG 59.969 55.0 0.00 0.0 0.0 3.77 R
1979 2063 0.184451 AAGCAAGCCCGGATCATCAT 59.816 50.0 0.73 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.986929 AATATATAGAAAAGGCTTGCTCTGTT 57.013 30.769 17.91 10.36 0.00 3.16
30 31 6.690194 ATATAGAAAAGGCTTGCTCTGTTG 57.310 37.500 17.91 0.00 0.00 3.33
31 32 1.339291 AGAAAAGGCTTGCTCTGTTGC 59.661 47.619 0.00 0.00 0.00 4.17
32 33 1.339291 GAAAAGGCTTGCTCTGTTGCT 59.661 47.619 0.00 0.00 0.00 3.91
33 34 0.957362 AAAGGCTTGCTCTGTTGCTC 59.043 50.000 0.00 0.00 0.00 4.26
34 35 0.179009 AAGGCTTGCTCTGTTGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
35 36 0.888285 AGGCTTGCTCTGTTGCTCAC 60.888 55.000 0.00 0.00 0.00 3.51
36 37 1.206072 GCTTGCTCTGTTGCTCACG 59.794 57.895 0.00 0.00 0.00 4.35
37 38 1.224069 GCTTGCTCTGTTGCTCACGA 61.224 55.000 0.00 0.00 0.00 4.35
38 39 1.220529 CTTGCTCTGTTGCTCACGAA 58.779 50.000 0.00 0.00 0.00 3.85
39 40 1.599071 CTTGCTCTGTTGCTCACGAAA 59.401 47.619 0.00 0.00 0.00 3.46
40 41 0.937304 TGCTCTGTTGCTCACGAAAC 59.063 50.000 0.00 0.00 0.00 2.78
41 42 0.937304 GCTCTGTTGCTCACGAAACA 59.063 50.000 0.00 0.00 36.31 2.83
46 47 2.899976 TGTTGCTCACGAAACAGAAGA 58.100 42.857 0.00 0.00 33.69 2.87
47 48 3.466836 TGTTGCTCACGAAACAGAAGAT 58.533 40.909 0.00 0.00 33.69 2.40
48 49 4.627058 TGTTGCTCACGAAACAGAAGATA 58.373 39.130 0.00 0.00 33.69 1.98
49 50 4.447724 TGTTGCTCACGAAACAGAAGATAC 59.552 41.667 0.00 0.00 33.69 2.24
50 51 3.242518 TGCTCACGAAACAGAAGATACG 58.757 45.455 0.00 0.00 0.00 3.06
51 52 2.599082 GCTCACGAAACAGAAGATACGG 59.401 50.000 0.00 0.00 0.00 4.02
52 53 3.834610 CTCACGAAACAGAAGATACGGT 58.165 45.455 0.00 0.00 0.00 4.83
53 54 4.235360 CTCACGAAACAGAAGATACGGTT 58.765 43.478 0.00 0.00 0.00 4.44
54 55 4.232221 TCACGAAACAGAAGATACGGTTC 58.768 43.478 0.00 0.00 0.00 3.62
55 56 3.059044 CACGAAACAGAAGATACGGTTCG 59.941 47.826 7.22 7.22 0.00 3.95
56 57 2.027688 CGAAACAGAAGATACGGTTCGC 59.972 50.000 0.00 0.00 0.00 4.70
57 58 2.005971 AACAGAAGATACGGTTCGCC 57.994 50.000 0.00 0.00 0.00 5.54
84 85 4.367023 CGCGAGGGACCGAACCAA 62.367 66.667 0.00 0.00 0.00 3.67
85 86 2.741211 GCGAGGGACCGAACCAAC 60.741 66.667 0.00 0.00 0.00 3.77
86 87 3.057337 CGAGGGACCGAACCAACT 58.943 61.111 0.00 0.00 0.00 3.16
87 88 1.880819 GCGAGGGACCGAACCAACTA 61.881 60.000 0.00 0.00 0.00 2.24
88 89 0.604578 CGAGGGACCGAACCAACTAA 59.395 55.000 0.00 0.00 0.00 2.24
89 90 1.670967 CGAGGGACCGAACCAACTAAC 60.671 57.143 0.00 0.00 0.00 2.34
90 91 0.319405 AGGGACCGAACCAACTAACG 59.681 55.000 0.00 0.00 0.00 3.18
91 92 0.318120 GGGACCGAACCAACTAACGA 59.682 55.000 0.00 0.00 0.00 3.85
92 93 1.270252 GGGACCGAACCAACTAACGAA 60.270 52.381 0.00 0.00 0.00 3.85
93 94 1.794701 GGACCGAACCAACTAACGAAC 59.205 52.381 0.00 0.00 0.00 3.95
94 95 2.472816 GACCGAACCAACTAACGAACA 58.527 47.619 0.00 0.00 0.00 3.18
95 96 3.062042 GACCGAACCAACTAACGAACAT 58.938 45.455 0.00 0.00 0.00 2.71
96 97 3.469739 ACCGAACCAACTAACGAACATT 58.530 40.909 0.00 0.00 0.00 2.71
97 98 4.630111 ACCGAACCAACTAACGAACATTA 58.370 39.130 0.00 0.00 0.00 1.90
98 99 4.448732 ACCGAACCAACTAACGAACATTAC 59.551 41.667 0.00 0.00 0.00 1.89
99 100 4.143052 CCGAACCAACTAACGAACATTACC 60.143 45.833 0.00 0.00 0.00 2.85
100 101 4.687483 CGAACCAACTAACGAACATTACCT 59.313 41.667 0.00 0.00 0.00 3.08
101 102 5.178067 CGAACCAACTAACGAACATTACCTT 59.822 40.000 0.00 0.00 0.00 3.50
102 103 6.549912 AACCAACTAACGAACATTACCTTC 57.450 37.500 0.00 0.00 0.00 3.46
103 104 4.999311 ACCAACTAACGAACATTACCTTCC 59.001 41.667 0.00 0.00 0.00 3.46
104 105 5.221783 ACCAACTAACGAACATTACCTTCCT 60.222 40.000 0.00 0.00 0.00 3.36
105 106 6.014327 ACCAACTAACGAACATTACCTTCCTA 60.014 38.462 0.00 0.00 0.00 2.94
106 107 6.312180 CCAACTAACGAACATTACCTTCCTAC 59.688 42.308 0.00 0.00 0.00 3.18
107 108 5.644644 ACTAACGAACATTACCTTCCTACG 58.355 41.667 0.00 0.00 0.00 3.51
108 109 4.525912 AACGAACATTACCTTCCTACGT 57.474 40.909 0.00 0.00 0.00 3.57
109 110 5.643379 AACGAACATTACCTTCCTACGTA 57.357 39.130 0.00 0.00 0.00 3.57
110 111 5.841957 ACGAACATTACCTTCCTACGTAT 57.158 39.130 0.00 0.00 0.00 3.06
111 112 6.942532 ACGAACATTACCTTCCTACGTATA 57.057 37.500 0.00 0.00 0.00 1.47
112 113 6.729187 ACGAACATTACCTTCCTACGTATAC 58.271 40.000 0.00 0.00 0.00 1.47
113 114 6.145535 CGAACATTACCTTCCTACGTATACC 58.854 44.000 0.00 0.00 0.00 2.73
114 115 6.016777 CGAACATTACCTTCCTACGTATACCT 60.017 42.308 0.00 0.00 0.00 3.08
115 116 6.645790 ACATTACCTTCCTACGTATACCTG 57.354 41.667 0.00 0.00 0.00 4.00
116 117 5.537674 ACATTACCTTCCTACGTATACCTGG 59.462 44.000 0.00 0.00 0.00 4.45
117 118 2.314246 ACCTTCCTACGTATACCTGGC 58.686 52.381 0.00 0.00 0.00 4.85
118 119 2.313317 CCTTCCTACGTATACCTGGCA 58.687 52.381 0.00 0.00 0.00 4.92
119 120 2.696707 CCTTCCTACGTATACCTGGCAA 59.303 50.000 0.00 0.00 0.00 4.52
120 121 3.323979 CCTTCCTACGTATACCTGGCAAT 59.676 47.826 0.00 0.00 0.00 3.56
121 122 4.202326 CCTTCCTACGTATACCTGGCAATT 60.202 45.833 0.00 0.00 0.00 2.32
122 123 5.011329 CCTTCCTACGTATACCTGGCAATTA 59.989 44.000 0.00 0.00 0.00 1.40
123 124 5.717078 TCCTACGTATACCTGGCAATTAG 57.283 43.478 0.00 0.00 0.00 1.73
124 125 4.525487 TCCTACGTATACCTGGCAATTAGG 59.475 45.833 0.00 0.00 41.22 2.69
125 126 3.121738 ACGTATACCTGGCAATTAGGC 57.878 47.619 0.00 0.00 38.96 3.93
132 133 2.830370 GGCAATTAGGCGCCTGCT 60.830 61.111 38.98 22.51 45.29 4.24
133 134 2.718107 GCAATTAGGCGCCTGCTC 59.282 61.111 38.98 18.38 42.25 4.26
134 135 2.838974 GCAATTAGGCGCCTGCTCC 61.839 63.158 38.98 18.51 42.25 4.70
135 136 1.153086 CAATTAGGCGCCTGCTCCT 60.153 57.895 38.98 14.66 42.25 3.69
136 137 1.147153 AATTAGGCGCCTGCTCCTC 59.853 57.895 38.98 3.05 42.25 3.71
137 138 1.341156 AATTAGGCGCCTGCTCCTCT 61.341 55.000 38.98 12.97 42.25 3.69
138 139 1.341156 ATTAGGCGCCTGCTCCTCTT 61.341 55.000 38.98 12.13 42.25 2.85
139 140 1.961180 TTAGGCGCCTGCTCCTCTTC 61.961 60.000 38.98 0.68 42.25 2.87
140 141 2.863019 TAGGCGCCTGCTCCTCTTCT 62.863 60.000 38.98 10.70 42.25 2.85
141 142 2.267324 GCGCCTGCTCCTCTTCTT 59.733 61.111 0.00 0.00 38.39 2.52
142 143 2.105466 GCGCCTGCTCCTCTTCTTG 61.105 63.158 0.00 0.00 38.39 3.02
143 144 2.105466 CGCCTGCTCCTCTTCTTGC 61.105 63.158 0.00 0.00 0.00 4.01
144 145 1.002868 GCCTGCTCCTCTTCTTGCA 60.003 57.895 0.00 0.00 0.00 4.08
145 146 1.304509 GCCTGCTCCTCTTCTTGCAC 61.305 60.000 0.00 0.00 0.00 4.57
146 147 1.018226 CCTGCTCCTCTTCTTGCACG 61.018 60.000 0.00 0.00 0.00 5.34
147 148 1.633852 CTGCTCCTCTTCTTGCACGC 61.634 60.000 0.00 0.00 0.00 5.34
148 149 1.375268 GCTCCTCTTCTTGCACGCT 60.375 57.895 0.00 0.00 0.00 5.07
149 150 0.952984 GCTCCTCTTCTTGCACGCTT 60.953 55.000 0.00 0.00 0.00 4.68
150 151 0.795085 CTCCTCTTCTTGCACGCTTG 59.205 55.000 0.00 0.00 0.00 4.01
151 152 0.392706 TCCTCTTCTTGCACGCTTGA 59.607 50.000 0.00 0.00 0.00 3.02
152 153 0.514691 CCTCTTCTTGCACGCTTGAC 59.485 55.000 0.00 0.00 0.00 3.18
162 163 2.633657 CGCTTGACGCAGCACTTT 59.366 55.556 0.00 0.00 40.09 2.66
163 164 1.439365 CGCTTGACGCAGCACTTTC 60.439 57.895 0.00 0.00 40.09 2.62
164 165 1.648720 GCTTGACGCAGCACTTTCA 59.351 52.632 0.00 0.00 39.83 2.69
165 166 0.239347 GCTTGACGCAGCACTTTCAT 59.761 50.000 0.00 0.00 39.83 2.57
166 167 1.959747 CTTGACGCAGCACTTTCATG 58.040 50.000 0.00 0.00 0.00 3.07
167 168 0.040157 TTGACGCAGCACTTTCATGC 60.040 50.000 0.00 0.00 46.50 4.06
174 175 1.503542 GCACTTTCATGCGGTCAGG 59.496 57.895 0.00 0.00 35.50 3.86
175 176 0.955428 GCACTTTCATGCGGTCAGGA 60.955 55.000 0.00 0.00 35.50 3.86
176 177 1.081892 CACTTTCATGCGGTCAGGAG 58.918 55.000 0.00 0.00 34.24 3.69
177 178 0.976641 ACTTTCATGCGGTCAGGAGA 59.023 50.000 0.00 0.00 34.24 3.71
178 179 1.338200 ACTTTCATGCGGTCAGGAGAC 60.338 52.381 0.00 0.00 44.21 3.36
186 187 2.574399 GTCAGGAGACCGAGCACC 59.426 66.667 0.00 0.00 38.89 5.01
187 188 1.979693 GTCAGGAGACCGAGCACCT 60.980 63.158 0.00 0.00 38.89 4.00
188 189 2.575993 CAGGAGACCGAGCACCTG 59.424 66.667 0.00 0.00 42.71 4.00
189 190 2.118513 AGGAGACCGAGCACCTGT 59.881 61.111 0.00 0.00 0.00 4.00
190 191 2.262915 GGAGACCGAGCACCTGTG 59.737 66.667 0.00 0.00 0.00 3.66
191 192 2.262915 GAGACCGAGCACCTGTGG 59.737 66.667 0.00 0.00 0.00 4.17
192 193 2.203640 AGACCGAGCACCTGTGGA 60.204 61.111 0.00 0.00 0.00 4.02
193 194 2.219325 GAGACCGAGCACCTGTGGAG 62.219 65.000 0.00 0.00 0.00 3.86
194 195 2.524394 ACCGAGCACCTGTGGAGT 60.524 61.111 0.00 0.00 0.00 3.85
195 196 1.228769 ACCGAGCACCTGTGGAGTA 60.229 57.895 0.00 0.00 0.00 2.59
196 197 0.614979 ACCGAGCACCTGTGGAGTAT 60.615 55.000 0.00 0.00 0.00 2.12
197 198 0.179100 CCGAGCACCTGTGGAGTATG 60.179 60.000 0.00 0.00 0.00 2.39
198 199 0.807667 CGAGCACCTGTGGAGTATGC 60.808 60.000 0.00 0.00 36.52 3.14
199 200 0.250234 GAGCACCTGTGGAGTATGCA 59.750 55.000 0.00 0.00 38.79 3.96
200 201 0.914644 AGCACCTGTGGAGTATGCAT 59.085 50.000 3.79 3.79 39.99 3.96
201 202 1.019673 GCACCTGTGGAGTATGCATG 58.980 55.000 10.16 0.00 39.99 4.06
202 203 1.679944 GCACCTGTGGAGTATGCATGT 60.680 52.381 10.16 0.00 39.99 3.21
203 204 2.283298 CACCTGTGGAGTATGCATGTC 58.717 52.381 10.16 5.88 39.99 3.06
204 205 1.134699 ACCTGTGGAGTATGCATGTCG 60.135 52.381 10.16 0.00 39.99 4.35
205 206 0.933097 CTGTGGAGTATGCATGTCGC 59.067 55.000 10.16 4.24 39.99 5.19
206 207 0.461870 TGTGGAGTATGCATGTCGCC 60.462 55.000 10.16 13.63 39.99 5.54
207 208 0.461870 GTGGAGTATGCATGTCGCCA 60.462 55.000 19.18 19.18 39.99 5.69
208 209 0.251634 TGGAGTATGCATGTCGCCAA 59.748 50.000 20.20 9.23 41.33 4.52
209 210 0.657840 GGAGTATGCATGTCGCCAAC 59.342 55.000 10.16 0.00 41.33 3.77
210 211 1.656652 GAGTATGCATGTCGCCAACT 58.343 50.000 10.16 2.11 41.33 3.16
211 212 2.009774 GAGTATGCATGTCGCCAACTT 58.990 47.619 10.16 0.00 41.33 2.66
212 213 2.420022 GAGTATGCATGTCGCCAACTTT 59.580 45.455 10.16 0.00 41.33 2.66
213 214 2.819608 AGTATGCATGTCGCCAACTTTT 59.180 40.909 10.16 0.00 41.33 2.27
214 215 2.352503 ATGCATGTCGCCAACTTTTC 57.647 45.000 0.00 0.00 41.33 2.29
215 216 1.028130 TGCATGTCGCCAACTTTTCA 58.972 45.000 0.00 0.00 41.33 2.69
216 217 1.612950 TGCATGTCGCCAACTTTTCAT 59.387 42.857 0.00 0.00 41.33 2.57
217 218 2.035704 TGCATGTCGCCAACTTTTCATT 59.964 40.909 0.00 0.00 41.33 2.57
218 219 3.059166 GCATGTCGCCAACTTTTCATTT 58.941 40.909 0.00 0.00 32.94 2.32
219 220 3.121778 GCATGTCGCCAACTTTTCATTTC 59.878 43.478 0.00 0.00 32.94 2.17
220 221 4.297510 CATGTCGCCAACTTTTCATTTCA 58.702 39.130 0.00 0.00 0.00 2.69
221 222 4.582701 TGTCGCCAACTTTTCATTTCAT 57.417 36.364 0.00 0.00 0.00 2.57
222 223 4.942852 TGTCGCCAACTTTTCATTTCATT 58.057 34.783 0.00 0.00 0.00 2.57
223 224 5.355596 TGTCGCCAACTTTTCATTTCATTT 58.644 33.333 0.00 0.00 0.00 2.32
224 225 5.461737 TGTCGCCAACTTTTCATTTCATTTC 59.538 36.000 0.00 0.00 0.00 2.17
225 226 5.691754 GTCGCCAACTTTTCATTTCATTTCT 59.308 36.000 0.00 0.00 0.00 2.52
226 227 6.200854 GTCGCCAACTTTTCATTTCATTTCTT 59.799 34.615 0.00 0.00 0.00 2.52
227 228 6.200665 TCGCCAACTTTTCATTTCATTTCTTG 59.799 34.615 0.00 0.00 0.00 3.02
228 229 6.018832 CGCCAACTTTTCATTTCATTTCTTGT 60.019 34.615 0.00 0.00 0.00 3.16
229 230 7.168972 CGCCAACTTTTCATTTCATTTCTTGTA 59.831 33.333 0.00 0.00 0.00 2.41
230 231 8.825745 GCCAACTTTTCATTTCATTTCTTGTAA 58.174 29.630 0.00 0.00 0.00 2.41
234 235 8.702438 ACTTTTCATTTCATTTCTTGTAATGCG 58.298 29.630 0.00 0.00 40.80 4.73
235 236 8.586570 TTTTCATTTCATTTCTTGTAATGCGT 57.413 26.923 0.00 0.00 40.80 5.24
236 237 7.565450 TTCATTTCATTTCTTGTAATGCGTG 57.435 32.000 0.00 0.00 40.80 5.34
237 238 6.907741 TCATTTCATTTCTTGTAATGCGTGA 58.092 32.000 0.00 0.00 40.80 4.35
238 239 6.801377 TCATTTCATTTCTTGTAATGCGTGAC 59.199 34.615 0.00 0.00 40.80 3.67
239 240 5.940192 TTCATTTCTTGTAATGCGTGACT 57.060 34.783 0.00 0.00 35.86 3.41
240 241 5.530519 TCATTTCTTGTAATGCGTGACTC 57.469 39.130 0.00 0.00 35.86 3.36
241 242 4.994217 TCATTTCTTGTAATGCGTGACTCA 59.006 37.500 0.00 0.00 35.86 3.41
242 243 4.990543 TTTCTTGTAATGCGTGACTCAG 57.009 40.909 0.00 0.00 0.00 3.35
243 244 2.337583 TCTTGTAATGCGTGACTCAGC 58.662 47.619 0.00 0.00 0.00 4.26
244 245 1.394917 CTTGTAATGCGTGACTCAGCC 59.605 52.381 0.00 0.00 0.00 4.85
245 246 0.391130 TGTAATGCGTGACTCAGCCC 60.391 55.000 0.00 0.00 0.00 5.19
246 247 0.391130 GTAATGCGTGACTCAGCCCA 60.391 55.000 0.00 0.00 0.00 5.36
247 248 0.541392 TAATGCGTGACTCAGCCCAT 59.459 50.000 0.00 0.00 0.00 4.00
248 249 0.322816 AATGCGTGACTCAGCCCATT 60.323 50.000 0.00 0.00 0.00 3.16
249 250 0.322816 ATGCGTGACTCAGCCCATTT 60.323 50.000 0.00 0.00 0.00 2.32
250 251 1.236616 TGCGTGACTCAGCCCATTTG 61.237 55.000 0.00 0.00 0.00 2.32
251 252 1.926511 GCGTGACTCAGCCCATTTGG 61.927 60.000 0.00 0.00 37.09 3.28
252 253 0.321564 CGTGACTCAGCCCATTTGGA 60.322 55.000 0.00 0.00 37.39 3.53
253 254 1.168714 GTGACTCAGCCCATTTGGAC 58.831 55.000 0.00 0.00 37.39 4.02
254 255 0.321564 TGACTCAGCCCATTTGGACG 60.322 55.000 0.00 0.00 37.39 4.79
255 256 0.036388 GACTCAGCCCATTTGGACGA 60.036 55.000 0.00 0.00 37.39 4.20
256 257 0.036010 ACTCAGCCCATTTGGACGAG 60.036 55.000 0.00 3.65 37.39 4.18
257 258 0.250234 CTCAGCCCATTTGGACGAGA 59.750 55.000 0.00 0.00 37.39 4.04
258 259 0.250234 TCAGCCCATTTGGACGAGAG 59.750 55.000 0.00 0.00 37.39 3.20
259 260 0.250234 CAGCCCATTTGGACGAGAGA 59.750 55.000 0.00 0.00 37.39 3.10
260 261 0.539051 AGCCCATTTGGACGAGAGAG 59.461 55.000 0.00 0.00 37.39 3.20
261 262 0.537188 GCCCATTTGGACGAGAGAGA 59.463 55.000 0.00 0.00 37.39 3.10
262 263 1.472376 GCCCATTTGGACGAGAGAGAG 60.472 57.143 0.00 0.00 37.39 3.20
263 264 2.103373 CCCATTTGGACGAGAGAGAGA 58.897 52.381 0.00 0.00 37.39 3.10
264 265 2.100584 CCCATTTGGACGAGAGAGAGAG 59.899 54.545 0.00 0.00 37.39 3.20
265 266 3.020274 CCATTTGGACGAGAGAGAGAGA 58.980 50.000 0.00 0.00 37.39 3.10
266 267 3.181491 CCATTTGGACGAGAGAGAGAGAC 60.181 52.174 0.00 0.00 37.39 3.36
267 268 2.861147 TTGGACGAGAGAGAGAGACA 57.139 50.000 0.00 0.00 0.00 3.41
268 269 2.861147 TGGACGAGAGAGAGAGACAA 57.139 50.000 0.00 0.00 0.00 3.18
269 270 3.141767 TGGACGAGAGAGAGAGACAAA 57.858 47.619 0.00 0.00 0.00 2.83
270 271 3.487372 TGGACGAGAGAGAGAGACAAAA 58.513 45.455 0.00 0.00 0.00 2.44
271 272 3.889538 TGGACGAGAGAGAGAGACAAAAA 59.110 43.478 0.00 0.00 0.00 1.94
292 293 4.718940 AAAAAGGTGTTCTGGTCAAGTG 57.281 40.909 0.00 0.00 0.00 3.16
293 294 3.644966 AAAGGTGTTCTGGTCAAGTGA 57.355 42.857 0.00 0.00 0.00 3.41
294 295 3.864789 AAGGTGTTCTGGTCAAGTGAT 57.135 42.857 0.00 0.00 0.00 3.06
295 296 3.409026 AGGTGTTCTGGTCAAGTGATC 57.591 47.619 0.00 0.00 0.00 2.92
296 297 2.069273 GGTGTTCTGGTCAAGTGATCG 58.931 52.381 0.00 0.00 0.00 3.69
297 298 2.069273 GTGTTCTGGTCAAGTGATCGG 58.931 52.381 0.00 0.00 32.85 4.18
298 299 1.001974 TGTTCTGGTCAAGTGATCGGG 59.998 52.381 0.59 0.00 32.46 5.14
299 300 1.002087 GTTCTGGTCAAGTGATCGGGT 59.998 52.381 0.59 0.00 32.46 5.28
300 301 0.895530 TCTGGTCAAGTGATCGGGTC 59.104 55.000 0.59 0.00 32.46 4.46
301 302 0.608130 CTGGTCAAGTGATCGGGTCA 59.392 55.000 0.00 0.00 0.00 4.02
302 303 1.001974 CTGGTCAAGTGATCGGGTCAA 59.998 52.381 0.00 0.00 38.90 3.18
303 304 1.418264 TGGTCAAGTGATCGGGTCAAA 59.582 47.619 0.00 0.00 38.90 2.69
304 305 1.804748 GGTCAAGTGATCGGGTCAAAC 59.195 52.381 0.00 0.00 38.90 2.93
305 306 2.489971 GTCAAGTGATCGGGTCAAACA 58.510 47.619 0.00 0.00 38.90 2.83
306 307 2.223377 GTCAAGTGATCGGGTCAAACAC 59.777 50.000 0.00 0.00 38.90 3.32
315 316 1.142474 GGGTCAAACACGACTAACCG 58.858 55.000 0.00 0.00 36.12 4.44
316 317 1.538849 GGGTCAAACACGACTAACCGT 60.539 52.381 0.00 0.00 44.43 4.83
317 318 2.288152 GGGTCAAACACGACTAACCGTA 60.288 50.000 0.00 0.00 41.29 4.02
318 319 3.578688 GGTCAAACACGACTAACCGTAT 58.421 45.455 0.00 0.00 41.29 3.06
319 320 4.380444 GGGTCAAACACGACTAACCGTATA 60.380 45.833 0.00 0.00 41.29 1.47
320 321 4.795278 GGTCAAACACGACTAACCGTATAG 59.205 45.833 0.00 0.00 41.29 1.31
321 322 5.393962 GTCAAACACGACTAACCGTATAGT 58.606 41.667 0.00 0.00 41.29 2.12
322 323 6.403200 GGTCAAACACGACTAACCGTATAGTA 60.403 42.308 0.00 0.00 41.29 1.82
323 324 7.189512 GTCAAACACGACTAACCGTATAGTAT 58.810 38.462 0.00 0.00 41.29 2.12
324 325 8.335356 GTCAAACACGACTAACCGTATAGTATA 58.665 37.037 0.00 0.00 41.29 1.47
325 326 9.056005 TCAAACACGACTAACCGTATAGTATAT 57.944 33.333 0.00 0.00 41.29 0.86
329 330 9.875691 ACACGACTAACCGTATAGTATATATGA 57.124 33.333 0.00 0.00 41.29 2.15
348 349 7.977789 ATATGAATATAATGAACACACCGCA 57.022 32.000 0.00 0.00 0.00 5.69
349 350 6.691754 ATGAATATAATGAACACACCGCAA 57.308 33.333 0.00 0.00 0.00 4.85
350 351 6.502136 TGAATATAATGAACACACCGCAAA 57.498 33.333 0.00 0.00 0.00 3.68
351 352 6.914259 TGAATATAATGAACACACCGCAAAA 58.086 32.000 0.00 0.00 0.00 2.44
352 353 7.371159 TGAATATAATGAACACACCGCAAAAA 58.629 30.769 0.00 0.00 0.00 1.94
377 378 6.467723 AAGAATATAATGAACGACGATGGC 57.532 37.500 0.00 0.00 0.00 4.40
378 379 5.784177 AGAATATAATGAACGACGATGGCT 58.216 37.500 0.00 0.00 0.00 4.75
379 380 5.864474 AGAATATAATGAACGACGATGGCTC 59.136 40.000 0.00 0.00 0.00 4.70
380 381 2.218953 TAATGAACGACGATGGCTCC 57.781 50.000 0.00 0.00 0.00 4.70
390 391 1.070445 GATGGCTCCGTCATCAGGG 59.930 63.158 3.75 0.00 43.31 4.45
398 399 3.950232 GTCATCAGGGGACGGCTA 58.050 61.111 0.00 0.00 0.00 3.93
399 400 1.442148 GTCATCAGGGGACGGCTAC 59.558 63.158 0.00 0.00 0.00 3.58
400 401 1.760875 TCATCAGGGGACGGCTACC 60.761 63.158 0.00 0.00 0.00 3.18
442 443 4.039973 CCAATCCAATCCAATCCAATCCAG 59.960 45.833 0.00 0.00 0.00 3.86
484 485 3.001939 CCGCCACATCCTACGATTTTTAC 59.998 47.826 0.00 0.00 0.00 2.01
486 487 3.314357 GCCACATCCTACGATTTTTACCC 59.686 47.826 0.00 0.00 0.00 3.69
488 489 5.130350 CCACATCCTACGATTTTTACCCAT 58.870 41.667 0.00 0.00 0.00 4.00
489 490 6.292923 CCACATCCTACGATTTTTACCCATA 58.707 40.000 0.00 0.00 0.00 2.74
490 491 6.204108 CCACATCCTACGATTTTTACCCATAC 59.796 42.308 0.00 0.00 0.00 2.39
511 518 1.900245 ACTTAATTTTCACCCCGCGT 58.100 45.000 4.92 0.00 0.00 6.01
628 637 2.432628 GCACTTAGCTGACGCGGT 60.433 61.111 12.47 0.00 42.32 5.68
629 638 2.027625 GCACTTAGCTGACGCGGTT 61.028 57.895 12.47 0.00 42.32 4.44
630 639 0.734942 GCACTTAGCTGACGCGGTTA 60.735 55.000 12.47 0.00 42.32 2.85
636 645 0.529992 AGCTGACGCGGTTATTAGGC 60.530 55.000 12.47 3.03 42.32 3.93
674 683 1.664965 GACATGGATAGCCGACGCC 60.665 63.158 0.00 0.00 36.79 5.68
703 712 2.511600 GCGTGATCCAAGGACCGG 60.512 66.667 0.00 0.00 0.00 5.28
704 713 3.014085 GCGTGATCCAAGGACCGGA 62.014 63.158 9.46 0.00 36.84 5.14
705 714 1.153628 CGTGATCCAAGGACCGGAC 60.154 63.158 9.46 0.00 34.69 4.79
706 715 1.221021 GTGATCCAAGGACCGGACC 59.779 63.158 15.76 15.76 34.69 4.46
707 716 1.993391 TGATCCAAGGACCGGACCC 60.993 63.158 19.83 14.06 34.69 4.46
740 754 2.636412 GCCATCGGATCGGATCGGA 61.636 63.158 24.59 24.59 41.85 4.55
742 756 0.101399 CCATCGGATCGGATCGGATC 59.899 60.000 28.08 26.93 44.42 3.36
743 757 0.248255 CATCGGATCGGATCGGATCG 60.248 60.000 28.08 23.09 44.42 3.69
744 758 1.377366 ATCGGATCGGATCGGATCGG 61.377 60.000 29.59 29.59 43.26 4.18
745 759 2.885861 GGATCGGATCGGATCGGG 59.114 66.667 27.38 12.02 43.00 5.14
746 760 1.977544 GGATCGGATCGGATCGGGT 60.978 63.158 27.38 16.36 43.00 5.28
747 761 1.507174 GATCGGATCGGATCGGGTC 59.493 63.158 22.80 19.05 34.07 4.46
748 762 2.254703 GATCGGATCGGATCGGGTCG 62.255 65.000 22.80 13.43 34.07 4.79
749 763 4.039357 CGGATCGGATCGGGTCGG 62.039 72.222 15.55 7.03 0.00 4.79
750 764 3.681835 GGATCGGATCGGGTCGGG 61.682 72.222 11.62 0.00 0.00 5.14
751 765 4.359455 GATCGGATCGGGTCGGGC 62.359 72.222 1.62 0.00 0.00 6.13
777 791 1.559682 ACTATTGGATCCACTTGCCGT 59.440 47.619 15.91 3.25 0.00 5.68
793 807 3.301746 CGTAGGGAGAAGGAAGGGT 57.698 57.895 0.00 0.00 0.00 4.34
794 808 0.824759 CGTAGGGAGAAGGAAGGGTG 59.175 60.000 0.00 0.00 0.00 4.61
795 809 1.895866 CGTAGGGAGAAGGAAGGGTGT 60.896 57.143 0.00 0.00 0.00 4.16
796 810 1.555533 GTAGGGAGAAGGAAGGGTGTG 59.444 57.143 0.00 0.00 0.00 3.82
797 811 0.193574 AGGGAGAAGGAAGGGTGTGA 59.806 55.000 0.00 0.00 0.00 3.58
799 813 1.353091 GGAGAAGGAAGGGTGTGAGT 58.647 55.000 0.00 0.00 0.00 3.41
800 814 1.276705 GGAGAAGGAAGGGTGTGAGTC 59.723 57.143 0.00 0.00 0.00 3.36
801 815 0.969894 AGAAGGAAGGGTGTGAGTCG 59.030 55.000 0.00 0.00 0.00 4.18
802 816 0.670854 GAAGGAAGGGTGTGAGTCGC 60.671 60.000 0.00 0.00 0.00 5.19
803 817 2.047179 GGAAGGGTGTGAGTCGCC 60.047 66.667 0.23 0.00 45.27 5.54
804 818 2.432628 GAAGGGTGTGAGTCGCCG 60.433 66.667 0.23 0.00 46.82 6.46
805 819 3.222354 GAAGGGTGTGAGTCGCCGT 62.222 63.158 0.23 0.00 46.82 5.68
860 884 2.359975 GCAGACCCCTTCAACCCG 60.360 66.667 0.00 0.00 0.00 5.28
871 897 4.052229 CAACCCGACTCCGCGTCT 62.052 66.667 4.92 0.00 40.59 4.18
911 937 5.414360 CGGTTAAGTAACTAACCCCTTCTC 58.586 45.833 6.89 0.00 45.54 2.87
928 954 0.252467 CTCCCTCCCTTGTCCACTCT 60.252 60.000 0.00 0.00 0.00 3.24
939 965 1.613630 TCCACTCTGCTTCTCCCCC 60.614 63.158 0.00 0.00 0.00 5.40
961 1026 1.674817 CCAAGAAACCGGCGTACAGAT 60.675 52.381 6.01 0.00 0.00 2.90
967 1032 1.440518 CCGGCGTACAGATCGATCG 60.441 63.158 19.33 9.36 0.00 3.69
1308 1392 2.328099 GGCCAAGGTCGTCAAGCTG 61.328 63.158 0.00 0.00 35.40 4.24
1479 1563 1.464376 CCCGCATCACCTCCGAGTAT 61.464 60.000 0.00 0.00 0.00 2.12
1788 1872 3.411351 CGGGCAAGGTCGTTCGTG 61.411 66.667 0.00 0.00 0.00 4.35
1879 1963 2.426406 ATCGGCATCCTGCTCGTCA 61.426 57.895 0.00 0.00 44.28 4.35
1913 1997 0.811616 GTCATCCCCATCGTGCTCAC 60.812 60.000 0.00 0.00 0.00 3.51
1914 1998 1.524621 CATCCCCATCGTGCTCACC 60.525 63.158 0.00 0.00 0.00 4.02
1931 2015 1.066002 CACCAACACCAACAAGAGCAG 59.934 52.381 0.00 0.00 0.00 4.24
1954 2038 1.676006 ACAACAACAACCAGCAGTAGC 59.324 47.619 0.00 0.00 42.56 3.58
1968 2052 0.326048 AGTAGCCTGTGGATCTGCCT 60.326 55.000 0.00 0.00 37.63 4.75
1969 2053 0.179062 GTAGCCTGTGGATCTGCCTG 60.179 60.000 0.00 0.00 37.63 4.85
1970 2054 1.976132 TAGCCTGTGGATCTGCCTGC 61.976 60.000 0.00 0.00 37.63 4.85
1971 2055 2.124403 CCTGTGGATCTGCCTGCC 60.124 66.667 0.00 0.00 37.63 4.85
1972 2056 2.124403 CTGTGGATCTGCCTGCCC 60.124 66.667 0.00 0.00 37.63 5.36
1973 2057 4.100084 TGTGGATCTGCCTGCCCG 62.100 66.667 0.00 0.00 37.63 6.13
1974 2058 4.101448 GTGGATCTGCCTGCCCGT 62.101 66.667 0.00 0.00 37.63 5.28
1975 2059 4.100084 TGGATCTGCCTGCCCGTG 62.100 66.667 0.00 0.00 37.63 4.94
1976 2060 4.864334 GGATCTGCCTGCCCGTGG 62.864 72.222 0.00 0.00 0.00 4.94
1989 2073 2.023771 CCGTGGCGATGATGATCCG 61.024 63.158 0.00 0.00 0.00 4.18
2001 2085 2.439156 GATCCGGGCTTGCTTGCT 60.439 61.111 0.00 0.00 0.00 3.91
2020 2105 1.067516 CTTCTTGCTGGGTGTTGTTGG 59.932 52.381 0.00 0.00 0.00 3.77
2022 2107 0.823460 CTTGCTGGGTGTTGTTGGTT 59.177 50.000 0.00 0.00 0.00 3.67
2081 2166 2.970324 TGCGGTTCGTTGAGCCAC 60.970 61.111 0.66 0.00 32.31 5.01
2095 2180 5.234329 CGTTGAGCCACTCGATTATGTTATT 59.766 40.000 0.00 0.00 32.35 1.40
2514 2619 6.166984 ACATATTGAATGACGAGGAGACAT 57.833 37.500 0.00 0.00 36.84 3.06
2633 3445 4.263639 CCACCATGGCCATCAGACTATATT 60.264 45.833 17.61 0.00 0.00 1.28
2675 3488 1.338973 CCAAACTGTTGCAGCTGTCAT 59.661 47.619 16.64 3.68 34.37 3.06
2682 3495 0.250252 TTGCAGCTGTCATCGGTTGA 60.250 50.000 16.64 0.00 33.87 3.18
2694 3507 2.746277 GGTTGACCGCCGCTTCAT 60.746 61.111 0.00 0.00 0.00 2.57
2695 3508 2.750888 GGTTGACCGCCGCTTCATC 61.751 63.158 0.00 0.00 0.00 2.92
2696 3509 2.813474 TTGACCGCCGCTTCATCG 60.813 61.111 0.00 0.00 0.00 3.84
2907 3728 6.771749 AGAAGAGAATGGCCATTGAATTAGAG 59.228 38.462 35.31 0.00 0.00 2.43
2913 3734 4.025360 TGGCCATTGAATTAGAGCATGTT 58.975 39.130 0.00 0.00 0.00 2.71
2916 3737 5.279384 GCCATTGAATTAGAGCATGTTCAG 58.721 41.667 12.41 0.00 32.76 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.844244 CAACAGAGCAAGCCTTTTCTATATATT 58.156 33.333 0.00 0.00 0.00 1.28
5 6 7.040823 GCAACAGAGCAAGCCTTTTCTATATAT 60.041 37.037 0.00 0.00 0.00 0.86
6 7 6.260936 GCAACAGAGCAAGCCTTTTCTATATA 59.739 38.462 0.00 0.00 0.00 0.86
7 8 5.067023 GCAACAGAGCAAGCCTTTTCTATAT 59.933 40.000 0.00 0.00 0.00 0.86
8 9 4.396166 GCAACAGAGCAAGCCTTTTCTATA 59.604 41.667 0.00 0.00 0.00 1.31
9 10 3.192212 GCAACAGAGCAAGCCTTTTCTAT 59.808 43.478 0.00 0.00 0.00 1.98
10 11 2.554032 GCAACAGAGCAAGCCTTTTCTA 59.446 45.455 0.00 0.00 0.00 2.10
11 12 1.339291 GCAACAGAGCAAGCCTTTTCT 59.661 47.619 0.00 0.00 0.00 2.52
12 13 1.339291 AGCAACAGAGCAAGCCTTTTC 59.661 47.619 0.00 0.00 36.85 2.29
13 14 1.339291 GAGCAACAGAGCAAGCCTTTT 59.661 47.619 0.00 0.00 36.85 2.27
14 15 0.957362 GAGCAACAGAGCAAGCCTTT 59.043 50.000 0.00 0.00 36.85 3.11
15 16 0.179009 TGAGCAACAGAGCAAGCCTT 60.179 50.000 0.00 0.00 36.85 4.35
16 17 0.888285 GTGAGCAACAGAGCAAGCCT 60.888 55.000 0.00 0.00 36.85 4.58
17 18 1.578423 GTGAGCAACAGAGCAAGCC 59.422 57.895 0.00 0.00 36.85 4.35
18 19 1.206072 CGTGAGCAACAGAGCAAGC 59.794 57.895 0.00 0.00 36.85 4.01
19 20 1.220529 TTCGTGAGCAACAGAGCAAG 58.779 50.000 0.00 0.00 36.85 4.01
20 21 1.330521 GTTTCGTGAGCAACAGAGCAA 59.669 47.619 0.00 0.00 37.20 3.91
21 22 0.937304 GTTTCGTGAGCAACAGAGCA 59.063 50.000 0.00 0.00 37.20 4.26
22 23 0.937304 TGTTTCGTGAGCAACAGAGC 59.063 50.000 0.00 0.00 42.10 4.09
26 27 2.899976 TCTTCTGTTTCGTGAGCAACA 58.100 42.857 0.00 0.00 44.63 3.33
27 28 4.433022 CGTATCTTCTGTTTCGTGAGCAAC 60.433 45.833 0.00 0.00 37.75 4.17
28 29 3.673338 CGTATCTTCTGTTTCGTGAGCAA 59.327 43.478 0.00 0.00 0.00 3.91
29 30 3.242518 CGTATCTTCTGTTTCGTGAGCA 58.757 45.455 0.00 0.00 0.00 4.26
30 31 2.599082 CCGTATCTTCTGTTTCGTGAGC 59.401 50.000 0.00 0.00 0.00 4.26
31 32 3.834610 ACCGTATCTTCTGTTTCGTGAG 58.165 45.455 0.00 0.00 0.00 3.51
32 33 3.928727 ACCGTATCTTCTGTTTCGTGA 57.071 42.857 0.00 0.00 0.00 4.35
33 34 3.059044 CGAACCGTATCTTCTGTTTCGTG 59.941 47.826 0.00 0.00 0.00 4.35
34 35 3.240069 CGAACCGTATCTTCTGTTTCGT 58.760 45.455 0.00 0.00 0.00 3.85
35 36 2.027688 GCGAACCGTATCTTCTGTTTCG 59.972 50.000 0.00 0.00 0.00 3.46
36 37 2.347755 GGCGAACCGTATCTTCTGTTTC 59.652 50.000 0.00 0.00 0.00 2.78
37 38 2.344025 GGCGAACCGTATCTTCTGTTT 58.656 47.619 0.00 0.00 0.00 2.83
38 39 2.005971 GGCGAACCGTATCTTCTGTT 57.994 50.000 0.00 0.00 0.00 3.16
39 40 3.735181 GGCGAACCGTATCTTCTGT 57.265 52.632 0.00 0.00 0.00 3.41
67 68 4.367023 TTGGTTCGGTCCCTCGCG 62.367 66.667 0.00 0.00 0.00 5.87
68 69 1.880819 TAGTTGGTTCGGTCCCTCGC 61.881 60.000 0.00 0.00 0.00 5.03
69 70 0.604578 TTAGTTGGTTCGGTCCCTCG 59.395 55.000 0.00 0.00 0.00 4.63
70 71 1.670967 CGTTAGTTGGTTCGGTCCCTC 60.671 57.143 0.00 0.00 0.00 4.30
71 72 0.319405 CGTTAGTTGGTTCGGTCCCT 59.681 55.000 0.00 0.00 0.00 4.20
72 73 0.318120 TCGTTAGTTGGTTCGGTCCC 59.682 55.000 0.00 0.00 0.00 4.46
73 74 1.794701 GTTCGTTAGTTGGTTCGGTCC 59.205 52.381 0.00 0.00 0.00 4.46
74 75 2.472816 TGTTCGTTAGTTGGTTCGGTC 58.527 47.619 0.00 0.00 0.00 4.79
75 76 2.600470 TGTTCGTTAGTTGGTTCGGT 57.400 45.000 0.00 0.00 0.00 4.69
76 77 4.143052 GGTAATGTTCGTTAGTTGGTTCGG 60.143 45.833 0.00 0.00 0.00 4.30
77 78 4.687483 AGGTAATGTTCGTTAGTTGGTTCG 59.313 41.667 0.00 0.00 0.00 3.95
78 79 6.347969 GGAAGGTAATGTTCGTTAGTTGGTTC 60.348 42.308 0.00 0.00 0.00 3.62
79 80 5.471116 GGAAGGTAATGTTCGTTAGTTGGTT 59.529 40.000 0.00 0.00 0.00 3.67
80 81 4.999311 GGAAGGTAATGTTCGTTAGTTGGT 59.001 41.667 0.00 0.00 0.00 3.67
81 82 5.243207 AGGAAGGTAATGTTCGTTAGTTGG 58.757 41.667 0.00 0.00 0.00 3.77
82 83 6.034256 CGTAGGAAGGTAATGTTCGTTAGTTG 59.966 42.308 0.00 0.00 0.00 3.16
83 84 6.095377 CGTAGGAAGGTAATGTTCGTTAGTT 58.905 40.000 0.00 0.00 0.00 2.24
84 85 5.183904 ACGTAGGAAGGTAATGTTCGTTAGT 59.816 40.000 0.00 0.00 0.00 2.24
85 86 5.644644 ACGTAGGAAGGTAATGTTCGTTAG 58.355 41.667 0.00 0.00 0.00 2.34
86 87 5.643379 ACGTAGGAAGGTAATGTTCGTTA 57.357 39.130 0.00 0.00 0.00 3.18
87 88 4.525912 ACGTAGGAAGGTAATGTTCGTT 57.474 40.909 0.00 0.00 0.00 3.85
88 89 5.841957 ATACGTAGGAAGGTAATGTTCGT 57.158 39.130 0.08 0.00 30.30 3.85
89 90 6.016777 AGGTATACGTAGGAAGGTAATGTTCG 60.017 42.308 0.08 0.00 30.30 3.95
90 91 7.144000 CAGGTATACGTAGGAAGGTAATGTTC 58.856 42.308 0.08 0.00 30.30 3.18
91 92 6.041296 CCAGGTATACGTAGGAAGGTAATGTT 59.959 42.308 0.08 0.00 30.30 2.71
92 93 5.537674 CCAGGTATACGTAGGAAGGTAATGT 59.462 44.000 0.08 0.00 30.30 2.71
93 94 5.566230 GCCAGGTATACGTAGGAAGGTAATG 60.566 48.000 14.37 0.00 30.30 1.90
94 95 4.525874 GCCAGGTATACGTAGGAAGGTAAT 59.474 45.833 14.37 0.00 30.30 1.89
95 96 3.891366 GCCAGGTATACGTAGGAAGGTAA 59.109 47.826 14.37 0.00 30.30 2.85
96 97 3.117550 TGCCAGGTATACGTAGGAAGGTA 60.118 47.826 14.37 0.00 0.00 3.08
97 98 2.314246 GCCAGGTATACGTAGGAAGGT 58.686 52.381 14.37 0.00 0.00 3.50
98 99 2.313317 TGCCAGGTATACGTAGGAAGG 58.687 52.381 14.37 0.61 0.00 3.46
99 100 4.602340 ATTGCCAGGTATACGTAGGAAG 57.398 45.455 14.37 0.00 0.00 3.46
100 101 5.011329 CCTAATTGCCAGGTATACGTAGGAA 59.989 44.000 14.37 8.68 0.00 3.36
101 102 4.525487 CCTAATTGCCAGGTATACGTAGGA 59.475 45.833 14.37 0.71 0.00 2.94
102 103 4.817517 CCTAATTGCCAGGTATACGTAGG 58.182 47.826 0.08 4.12 0.00 3.18
103 104 4.243270 GCCTAATTGCCAGGTATACGTAG 58.757 47.826 0.08 0.00 35.45 3.51
104 105 3.305539 CGCCTAATTGCCAGGTATACGTA 60.306 47.826 0.00 0.00 35.45 3.57
105 106 2.547218 CGCCTAATTGCCAGGTATACGT 60.547 50.000 0.00 0.00 35.45 3.57
106 107 2.066262 CGCCTAATTGCCAGGTATACG 58.934 52.381 0.00 0.00 35.45 3.06
107 108 1.804748 GCGCCTAATTGCCAGGTATAC 59.195 52.381 0.00 0.00 35.45 1.47
108 109 2.178912 GCGCCTAATTGCCAGGTATA 57.821 50.000 0.00 0.00 35.45 1.47
109 110 3.021451 GCGCCTAATTGCCAGGTAT 57.979 52.632 0.00 0.00 35.45 2.73
110 111 4.551729 GCGCCTAATTGCCAGGTA 57.448 55.556 0.00 0.00 35.45 3.08
116 117 2.718107 GAGCAGGCGCCTAATTGC 59.282 61.111 32.30 28.70 39.83 3.56
117 118 1.153086 AGGAGCAGGCGCCTAATTG 60.153 57.895 32.30 19.55 44.34 2.32
118 119 1.147153 GAGGAGCAGGCGCCTAATT 59.853 57.895 32.30 17.85 46.11 1.40
119 120 1.341156 AAGAGGAGCAGGCGCCTAAT 61.341 55.000 32.30 21.33 46.11 1.73
120 121 1.961180 GAAGAGGAGCAGGCGCCTAA 61.961 60.000 32.30 0.00 46.11 2.69
121 122 2.364317 AAGAGGAGCAGGCGCCTA 60.364 61.111 32.30 0.00 46.11 3.93
123 124 3.322318 AAGAAGAGGAGCAGGCGCC 62.322 63.158 21.89 21.89 39.83 6.53
124 125 2.105466 CAAGAAGAGGAGCAGGCGC 61.105 63.158 0.00 0.00 38.99 6.53
125 126 2.105466 GCAAGAAGAGGAGCAGGCG 61.105 63.158 0.00 0.00 0.00 5.52
126 127 1.002868 TGCAAGAAGAGGAGCAGGC 60.003 57.895 0.00 0.00 32.48 4.85
127 128 1.018226 CGTGCAAGAAGAGGAGCAGG 61.018 60.000 0.00 0.00 37.72 4.85
128 129 1.633852 GCGTGCAAGAAGAGGAGCAG 61.634 60.000 2.99 0.00 37.72 4.24
129 130 1.669115 GCGTGCAAGAAGAGGAGCA 60.669 57.895 2.99 0.00 34.10 4.26
130 131 0.952984 AAGCGTGCAAGAAGAGGAGC 60.953 55.000 2.99 0.00 0.00 4.70
131 132 0.795085 CAAGCGTGCAAGAAGAGGAG 59.205 55.000 2.99 0.00 0.00 3.69
132 133 0.392706 TCAAGCGTGCAAGAAGAGGA 59.607 50.000 2.99 0.00 0.00 3.71
133 134 0.514691 GTCAAGCGTGCAAGAAGAGG 59.485 55.000 2.99 0.00 0.00 3.69
134 135 0.162507 CGTCAAGCGTGCAAGAAGAG 59.837 55.000 2.99 0.00 35.54 2.85
135 136 1.831389 GCGTCAAGCGTGCAAGAAGA 61.831 55.000 2.99 0.00 43.66 2.87
136 137 1.439365 GCGTCAAGCGTGCAAGAAG 60.439 57.895 2.99 0.00 43.66 2.85
137 138 2.631428 GCGTCAAGCGTGCAAGAA 59.369 55.556 2.99 0.00 43.66 2.52
147 148 1.959747 CATGAAAGTGCTGCGTCAAG 58.040 50.000 0.00 0.00 0.00 3.02
148 149 0.040157 GCATGAAAGTGCTGCGTCAA 60.040 50.000 0.00 0.00 41.82 3.18
149 150 1.575922 GCATGAAAGTGCTGCGTCA 59.424 52.632 0.00 0.00 41.82 4.35
150 151 4.447365 GCATGAAAGTGCTGCGTC 57.553 55.556 0.00 0.00 41.82 5.19
153 154 1.154150 GACCGCATGAAAGTGCTGC 60.154 57.895 0.00 0.00 42.88 5.25
154 155 0.167470 CTGACCGCATGAAAGTGCTG 59.833 55.000 0.00 0.00 42.88 4.41
155 156 0.957395 CCTGACCGCATGAAAGTGCT 60.957 55.000 0.00 0.00 42.88 4.40
156 157 0.955428 TCCTGACCGCATGAAAGTGC 60.955 55.000 0.00 0.00 41.65 4.40
157 158 1.081892 CTCCTGACCGCATGAAAGTG 58.918 55.000 0.00 0.00 0.00 3.16
158 159 0.976641 TCTCCTGACCGCATGAAAGT 59.023 50.000 0.00 0.00 0.00 2.66
159 160 1.363744 GTCTCCTGACCGCATGAAAG 58.636 55.000 0.00 0.00 37.24 2.62
160 161 3.532896 GTCTCCTGACCGCATGAAA 57.467 52.632 0.00 0.00 37.24 2.69
169 170 1.979693 AGGTGCTCGGTCTCCTGAC 60.980 63.158 0.00 0.00 42.22 3.51
170 171 1.979155 CAGGTGCTCGGTCTCCTGA 60.979 63.158 15.92 0.00 45.68 3.86
171 172 2.575993 CAGGTGCTCGGTCTCCTG 59.424 66.667 10.10 10.10 40.14 3.86
172 173 2.118513 ACAGGTGCTCGGTCTCCT 59.881 61.111 0.00 0.00 0.00 3.69
173 174 2.262915 CACAGGTGCTCGGTCTCC 59.737 66.667 0.00 0.00 0.00 3.71
174 175 2.219325 CTCCACAGGTGCTCGGTCTC 62.219 65.000 0.00 0.00 0.00 3.36
175 176 2.203640 TCCACAGGTGCTCGGTCT 60.204 61.111 0.00 0.00 0.00 3.85
176 177 1.248785 TACTCCACAGGTGCTCGGTC 61.249 60.000 0.00 0.00 0.00 4.79
177 178 0.614979 ATACTCCACAGGTGCTCGGT 60.615 55.000 0.00 0.00 0.00 4.69
178 179 0.179100 CATACTCCACAGGTGCTCGG 60.179 60.000 0.00 0.00 0.00 4.63
179 180 0.807667 GCATACTCCACAGGTGCTCG 60.808 60.000 0.00 0.00 34.32 5.03
180 181 0.250234 TGCATACTCCACAGGTGCTC 59.750 55.000 0.00 0.00 36.71 4.26
181 182 0.914644 ATGCATACTCCACAGGTGCT 59.085 50.000 0.00 0.00 36.71 4.40
182 183 1.019673 CATGCATACTCCACAGGTGC 58.980 55.000 0.00 0.00 36.45 5.01
183 184 2.283298 GACATGCATACTCCACAGGTG 58.717 52.381 0.00 0.00 0.00 4.00
184 185 1.134699 CGACATGCATACTCCACAGGT 60.135 52.381 0.00 0.00 0.00 4.00
185 186 1.575244 CGACATGCATACTCCACAGG 58.425 55.000 0.00 0.00 0.00 4.00
186 187 0.933097 GCGACATGCATACTCCACAG 59.067 55.000 0.00 0.00 45.45 3.66
187 188 3.064079 GCGACATGCATACTCCACA 57.936 52.632 0.00 0.00 45.45 4.17
197 198 2.352503 ATGAAAAGTTGGCGACATGC 57.647 45.000 7.78 0.00 42.32 4.06
198 199 4.297510 TGAAATGAAAAGTTGGCGACATG 58.702 39.130 7.78 0.00 42.32 3.21
199 200 4.582701 TGAAATGAAAAGTTGGCGACAT 57.417 36.364 7.78 0.00 42.32 3.06
200 201 4.582701 ATGAAATGAAAAGTTGGCGACA 57.417 36.364 7.78 0.00 39.83 4.35
201 202 5.691754 AGAAATGAAATGAAAAGTTGGCGAC 59.308 36.000 0.00 0.00 0.00 5.19
202 203 5.841810 AGAAATGAAATGAAAAGTTGGCGA 58.158 33.333 0.00 0.00 0.00 5.54
203 204 6.018832 ACAAGAAATGAAATGAAAAGTTGGCG 60.019 34.615 0.00 0.00 0.00 5.69
204 205 7.250445 ACAAGAAATGAAATGAAAAGTTGGC 57.750 32.000 0.00 0.00 0.00 4.52
208 209 8.702438 CGCATTACAAGAAATGAAATGAAAAGT 58.298 29.630 0.91 0.00 38.84 2.66
209 210 8.702438 ACGCATTACAAGAAATGAAATGAAAAG 58.298 29.630 0.91 0.00 38.84 2.27
210 211 8.486383 CACGCATTACAAGAAATGAAATGAAAA 58.514 29.630 0.91 0.00 38.84 2.29
211 212 7.864882 TCACGCATTACAAGAAATGAAATGAAA 59.135 29.630 0.91 0.00 38.84 2.69
212 213 7.325821 GTCACGCATTACAAGAAATGAAATGAA 59.674 33.333 0.91 0.00 38.84 2.57
213 214 6.801377 GTCACGCATTACAAGAAATGAAATGA 59.199 34.615 0.91 0.00 38.84 2.57
214 215 6.803320 AGTCACGCATTACAAGAAATGAAATG 59.197 34.615 0.91 0.00 38.84 2.32
215 216 6.913170 AGTCACGCATTACAAGAAATGAAAT 58.087 32.000 0.91 0.00 38.84 2.17
216 217 6.017523 TGAGTCACGCATTACAAGAAATGAAA 60.018 34.615 0.91 0.00 38.84 2.69
217 218 5.468409 TGAGTCACGCATTACAAGAAATGAA 59.532 36.000 0.91 0.00 38.84 2.57
218 219 4.994217 TGAGTCACGCATTACAAGAAATGA 59.006 37.500 0.91 0.00 38.84 2.57
219 220 5.281693 TGAGTCACGCATTACAAGAAATG 57.718 39.130 0.00 0.00 39.41 2.32
220 221 4.142816 GCTGAGTCACGCATTACAAGAAAT 60.143 41.667 8.99 0.00 0.00 2.17
221 222 3.186409 GCTGAGTCACGCATTACAAGAAA 59.814 43.478 8.99 0.00 0.00 2.52
222 223 2.736721 GCTGAGTCACGCATTACAAGAA 59.263 45.455 8.99 0.00 0.00 2.52
223 224 2.337583 GCTGAGTCACGCATTACAAGA 58.662 47.619 8.99 0.00 0.00 3.02
224 225 1.394917 GGCTGAGTCACGCATTACAAG 59.605 52.381 14.02 0.00 0.00 3.16
225 226 1.438651 GGCTGAGTCACGCATTACAA 58.561 50.000 14.02 0.00 0.00 2.41
226 227 0.391130 GGGCTGAGTCACGCATTACA 60.391 55.000 14.02 0.00 0.00 2.41
227 228 0.391130 TGGGCTGAGTCACGCATTAC 60.391 55.000 14.02 4.78 0.00 1.89
228 229 0.541392 ATGGGCTGAGTCACGCATTA 59.459 50.000 14.92 4.39 36.15 1.90
229 230 0.322816 AATGGGCTGAGTCACGCATT 60.323 50.000 21.32 21.32 42.53 3.56
230 231 0.322816 AAATGGGCTGAGTCACGCAT 60.323 50.000 14.92 14.92 40.74 4.73
231 232 1.073025 AAATGGGCTGAGTCACGCA 59.927 52.632 14.02 13.21 0.00 5.24
232 233 1.503542 CAAATGGGCTGAGTCACGC 59.496 57.895 6.14 6.14 0.00 5.34
233 234 0.321564 TCCAAATGGGCTGAGTCACG 60.322 55.000 0.00 0.00 36.21 4.35
234 235 1.168714 GTCCAAATGGGCTGAGTCAC 58.831 55.000 0.00 0.00 36.72 3.67
235 236 0.321564 CGTCCAAATGGGCTGAGTCA 60.322 55.000 2.11 0.00 37.76 3.41
236 237 0.036388 TCGTCCAAATGGGCTGAGTC 60.036 55.000 2.11 0.00 37.76 3.36
237 238 0.036010 CTCGTCCAAATGGGCTGAGT 60.036 55.000 13.92 0.00 37.76 3.41
238 239 0.250234 TCTCGTCCAAATGGGCTGAG 59.750 55.000 15.22 15.22 39.79 3.35
239 240 0.250234 CTCTCGTCCAAATGGGCTGA 59.750 55.000 2.11 1.00 37.76 4.26
240 241 0.250234 TCTCTCGTCCAAATGGGCTG 59.750 55.000 2.11 0.00 37.76 4.85
241 242 0.539051 CTCTCTCGTCCAAATGGGCT 59.461 55.000 2.11 0.00 37.76 5.19
242 243 0.537188 TCTCTCTCGTCCAAATGGGC 59.463 55.000 0.00 0.00 36.21 5.36
243 244 2.100584 CTCTCTCTCTCGTCCAAATGGG 59.899 54.545 0.00 0.00 35.41 4.00
244 245 3.020274 TCTCTCTCTCTCGTCCAAATGG 58.980 50.000 0.00 0.00 0.00 3.16
245 246 3.441922 TGTCTCTCTCTCTCGTCCAAATG 59.558 47.826 0.00 0.00 0.00 2.32
246 247 3.691575 TGTCTCTCTCTCTCGTCCAAAT 58.308 45.455 0.00 0.00 0.00 2.32
247 248 3.141767 TGTCTCTCTCTCTCGTCCAAA 57.858 47.619 0.00 0.00 0.00 3.28
248 249 2.861147 TGTCTCTCTCTCTCGTCCAA 57.139 50.000 0.00 0.00 0.00 3.53
249 250 2.861147 TTGTCTCTCTCTCTCGTCCA 57.139 50.000 0.00 0.00 0.00 4.02
250 251 4.506886 TTTTTGTCTCTCTCTCTCGTCC 57.493 45.455 0.00 0.00 0.00 4.79
271 272 4.340617 TCACTTGACCAGAACACCTTTTT 58.659 39.130 0.00 0.00 0.00 1.94
272 273 3.963129 TCACTTGACCAGAACACCTTTT 58.037 40.909 0.00 0.00 0.00 2.27
273 274 3.644966 TCACTTGACCAGAACACCTTT 57.355 42.857 0.00 0.00 0.00 3.11
274 275 3.744660 GATCACTTGACCAGAACACCTT 58.255 45.455 0.00 0.00 0.00 3.50
275 276 2.289072 CGATCACTTGACCAGAACACCT 60.289 50.000 0.00 0.00 0.00 4.00
276 277 2.069273 CGATCACTTGACCAGAACACC 58.931 52.381 0.00 0.00 0.00 4.16
277 278 2.069273 CCGATCACTTGACCAGAACAC 58.931 52.381 0.00 0.00 0.00 3.32
278 279 1.001974 CCCGATCACTTGACCAGAACA 59.998 52.381 0.00 0.00 0.00 3.18
279 280 1.002087 ACCCGATCACTTGACCAGAAC 59.998 52.381 0.00 0.00 0.00 3.01
280 281 1.275291 GACCCGATCACTTGACCAGAA 59.725 52.381 0.00 0.00 0.00 3.02
281 282 0.895530 GACCCGATCACTTGACCAGA 59.104 55.000 0.00 0.00 0.00 3.86
282 283 0.608130 TGACCCGATCACTTGACCAG 59.392 55.000 0.00 0.00 29.99 4.00
283 284 1.052617 TTGACCCGATCACTTGACCA 58.947 50.000 0.00 0.00 36.92 4.02
284 285 1.804748 GTTTGACCCGATCACTTGACC 59.195 52.381 0.00 0.00 36.92 4.02
285 286 2.223377 GTGTTTGACCCGATCACTTGAC 59.777 50.000 0.00 0.00 36.92 3.18
286 287 2.489971 GTGTTTGACCCGATCACTTGA 58.510 47.619 0.00 0.00 36.92 3.02
287 288 1.194547 CGTGTTTGACCCGATCACTTG 59.805 52.381 0.00 0.00 36.92 3.16
288 289 1.069513 TCGTGTTTGACCCGATCACTT 59.930 47.619 0.00 0.00 36.92 3.16
289 290 0.677288 TCGTGTTTGACCCGATCACT 59.323 50.000 0.00 0.00 36.92 3.41
290 291 0.788391 GTCGTGTTTGACCCGATCAC 59.212 55.000 0.00 0.00 36.92 3.06
291 292 0.677288 AGTCGTGTTTGACCCGATCA 59.323 50.000 0.00 0.00 39.77 2.92
292 293 2.642139 TAGTCGTGTTTGACCCGATC 57.358 50.000 0.00 0.00 39.77 3.69
293 294 2.611224 GGTTAGTCGTGTTTGACCCGAT 60.611 50.000 0.00 0.00 39.77 4.18
294 295 1.269726 GGTTAGTCGTGTTTGACCCGA 60.270 52.381 0.00 0.00 39.77 5.14
295 296 1.142474 GGTTAGTCGTGTTTGACCCG 58.858 55.000 0.00 0.00 39.77 5.28
296 297 1.142474 CGGTTAGTCGTGTTTGACCC 58.858 55.000 0.00 0.00 39.77 4.46
297 298 1.856802 ACGGTTAGTCGTGTTTGACC 58.143 50.000 0.00 0.00 42.21 4.02
298 299 5.393962 ACTATACGGTTAGTCGTGTTTGAC 58.606 41.667 0.00 0.00 43.70 3.18
299 300 5.627499 ACTATACGGTTAGTCGTGTTTGA 57.373 39.130 0.00 0.00 43.70 2.69
303 304 9.875691 TCATATATACTATACGGTTAGTCGTGT 57.124 33.333 3.16 0.00 43.70 4.49
322 323 9.665719 TGCGGTGTGTTCATTATATTCATATAT 57.334 29.630 0.00 0.00 0.00 0.86
323 324 9.495572 TTGCGGTGTGTTCATTATATTCATATA 57.504 29.630 0.00 0.00 0.00 0.86
324 325 7.977789 TGCGGTGTGTTCATTATATTCATAT 57.022 32.000 0.00 0.00 0.00 1.78
325 326 7.793927 TTGCGGTGTGTTCATTATATTCATA 57.206 32.000 0.00 0.00 0.00 2.15
326 327 6.691754 TTGCGGTGTGTTCATTATATTCAT 57.308 33.333 0.00 0.00 0.00 2.57
327 328 6.502136 TTTGCGGTGTGTTCATTATATTCA 57.498 33.333 0.00 0.00 0.00 2.57
328 329 7.804614 TTTTTGCGGTGTGTTCATTATATTC 57.195 32.000 0.00 0.00 0.00 1.75
351 352 7.855904 GCCATCGTCGTTCATTATATTCTTTTT 59.144 33.333 0.00 0.00 0.00 1.94
352 353 7.226720 AGCCATCGTCGTTCATTATATTCTTTT 59.773 33.333 0.00 0.00 0.00 2.27
353 354 6.706270 AGCCATCGTCGTTCATTATATTCTTT 59.294 34.615 0.00 0.00 0.00 2.52
354 355 6.223852 AGCCATCGTCGTTCATTATATTCTT 58.776 36.000 0.00 0.00 0.00 2.52
355 356 5.784177 AGCCATCGTCGTTCATTATATTCT 58.216 37.500 0.00 0.00 0.00 2.40
356 357 5.062308 GGAGCCATCGTCGTTCATTATATTC 59.938 44.000 0.00 0.00 0.00 1.75
357 358 4.929808 GGAGCCATCGTCGTTCATTATATT 59.070 41.667 0.00 0.00 0.00 1.28
358 359 4.495422 GGAGCCATCGTCGTTCATTATAT 58.505 43.478 0.00 0.00 0.00 0.86
359 360 3.610821 CGGAGCCATCGTCGTTCATTATA 60.611 47.826 0.00 0.00 0.00 0.98
360 361 2.755650 GGAGCCATCGTCGTTCATTAT 58.244 47.619 0.00 0.00 0.00 1.28
361 362 1.535226 CGGAGCCATCGTCGTTCATTA 60.535 52.381 0.00 0.00 0.00 1.90
362 363 0.806102 CGGAGCCATCGTCGTTCATT 60.806 55.000 0.00 0.00 0.00 2.57
363 364 1.226974 CGGAGCCATCGTCGTTCAT 60.227 57.895 0.00 0.00 0.00 2.57
364 365 2.180769 CGGAGCCATCGTCGTTCA 59.819 61.111 0.00 0.00 0.00 3.18
365 366 1.872679 GACGGAGCCATCGTCGTTC 60.873 63.158 8.02 0.00 45.53 3.95
366 367 2.181021 GACGGAGCCATCGTCGTT 59.819 61.111 8.02 0.00 45.53 3.85
370 371 1.439228 CTGATGACGGAGCCATCGT 59.561 57.895 0.00 0.00 42.37 3.73
371 372 1.300465 CCTGATGACGGAGCCATCG 60.300 63.158 0.00 0.00 42.37 3.84
372 373 1.070445 CCCTGATGACGGAGCCATC 59.930 63.158 0.00 0.00 40.48 3.51
373 374 2.446848 CCCCTGATGACGGAGCCAT 61.447 63.158 0.00 0.00 0.00 4.40
374 375 3.083349 CCCCTGATGACGGAGCCA 61.083 66.667 0.00 0.00 0.00 4.75
375 376 2.764128 TCCCCTGATGACGGAGCC 60.764 66.667 0.00 0.00 0.00 4.70
376 377 2.501610 GTCCCCTGATGACGGAGC 59.498 66.667 0.00 0.00 0.00 4.70
384 385 2.838225 CGGTAGCCGTCCCCTGAT 60.838 66.667 0.00 0.00 42.73 2.90
410 411 0.106918 GATTGGATTGGGTGGCGGTA 60.107 55.000 0.00 0.00 0.00 4.02
417 418 3.488355 TTGGATTGGATTGGATTGGGT 57.512 42.857 0.00 0.00 0.00 4.51
418 419 3.325716 GGATTGGATTGGATTGGATTGGG 59.674 47.826 0.00 0.00 0.00 4.12
442 443 2.851534 GCAAATTCTACGTGAACTGCC 58.148 47.619 16.89 7.28 39.25 4.85
484 485 5.529800 CGGGGTGAAAATTAAGTAGTATGGG 59.470 44.000 0.00 0.00 0.00 4.00
486 487 5.277154 CGCGGGGTGAAAATTAAGTAGTATG 60.277 44.000 0.00 0.00 0.00 2.39
488 489 4.183101 CGCGGGGTGAAAATTAAGTAGTA 58.817 43.478 0.00 0.00 0.00 1.82
489 490 3.004862 CGCGGGGTGAAAATTAAGTAGT 58.995 45.455 0.00 0.00 0.00 2.73
490 491 3.004862 ACGCGGGGTGAAAATTAAGTAG 58.995 45.455 12.47 0.00 0.00 2.57
511 518 2.342279 CCGGACAAACCAGCTCGA 59.658 61.111 0.00 0.00 38.90 4.04
539 546 0.441533 GATTCCATATCTGCAGCGCG 59.558 55.000 9.47 0.00 0.00 6.86
550 557 1.675483 GCATGTGCAACGGATTCCATA 59.325 47.619 3.09 0.00 42.39 2.74
616 625 1.269413 GCCTAATAACCGCGTCAGCTA 60.269 52.381 4.92 0.00 42.32 3.32
618 627 0.529992 AGCCTAATAACCGCGTCAGC 60.530 55.000 4.92 0.00 40.74 4.26
628 637 3.640029 ACCGGAAATCTCGAGCCTAATAA 59.360 43.478 9.46 0.00 0.00 1.40
629 638 3.228453 ACCGGAAATCTCGAGCCTAATA 58.772 45.455 9.46 0.00 0.00 0.98
630 639 2.040178 ACCGGAAATCTCGAGCCTAAT 58.960 47.619 9.46 0.00 0.00 1.73
636 645 2.094182 TCTGGAAACCGGAAATCTCGAG 60.094 50.000 9.46 5.93 35.75 4.04
703 712 3.485346 TTGGCGTCCAGGTTGGGTC 62.485 63.158 0.00 0.00 38.32 4.46
704 713 3.491598 CTTGGCGTCCAGGTTGGGT 62.492 63.158 0.00 0.00 38.32 4.51
705 714 2.672996 CTTGGCGTCCAGGTTGGG 60.673 66.667 0.00 0.00 38.32 4.12
706 715 3.365265 GCTTGGCGTCCAGGTTGG 61.365 66.667 9.14 0.00 39.43 3.77
707 716 3.365265 GGCTTGGCGTCCAGGTTG 61.365 66.667 9.14 0.26 33.81 3.77
740 754 0.825010 AGTAATACGCCCGACCCGAT 60.825 55.000 0.00 0.00 0.00 4.18
742 756 0.883833 ATAGTAATACGCCCGACCCG 59.116 55.000 0.00 0.00 0.00 5.28
743 757 2.611224 CCAATAGTAATACGCCCGACCC 60.611 54.545 0.00 0.00 0.00 4.46
744 758 2.297033 TCCAATAGTAATACGCCCGACC 59.703 50.000 0.00 0.00 0.00 4.79
745 759 3.648339 TCCAATAGTAATACGCCCGAC 57.352 47.619 0.00 0.00 0.00 4.79
746 760 3.194116 GGATCCAATAGTAATACGCCCGA 59.806 47.826 6.95 0.00 0.00 5.14
747 761 3.056393 TGGATCCAATAGTAATACGCCCG 60.056 47.826 13.46 0.00 0.00 6.13
748 762 4.020485 AGTGGATCCAATAGTAATACGCCC 60.020 45.833 18.20 0.00 0.00 6.13
749 763 5.148651 AGTGGATCCAATAGTAATACGCC 57.851 43.478 18.20 0.00 0.00 5.68
750 764 5.107065 GCAAGTGGATCCAATAGTAATACGC 60.107 44.000 18.20 5.16 0.00 4.42
751 765 5.408604 GGCAAGTGGATCCAATAGTAATACG 59.591 44.000 18.20 0.00 0.00 3.06
777 791 1.435563 TCACACCCTTCCTTCTCCCTA 59.564 52.381 0.00 0.00 0.00 3.53
789 803 3.681835 GACGGCGACTCACACCCT 61.682 66.667 16.62 0.00 0.00 4.34
792 806 4.338539 ACGGACGGCGACTCACAC 62.339 66.667 16.62 0.00 0.00 3.82
793 807 4.034258 GACGGACGGCGACTCACA 62.034 66.667 16.62 0.00 0.00 3.58
794 808 4.773117 GGACGGACGGCGACTCAC 62.773 72.222 16.62 1.47 0.00 3.51
802 816 3.459063 GAGGAAGGGGACGGACGG 61.459 72.222 0.00 0.00 0.00 4.79
803 817 3.459063 GGAGGAAGGGGACGGACG 61.459 72.222 0.00 0.00 0.00 4.79
804 818 3.082055 GGGAGGAAGGGGACGGAC 61.082 72.222 0.00 0.00 0.00 4.79
805 819 3.607299 TGGGAGGAAGGGGACGGA 61.607 66.667 0.00 0.00 0.00 4.69
871 897 2.836360 GGTACTGATCGGGGCGGA 60.836 66.667 6.47 0.00 0.00 5.54
911 937 1.986413 CAGAGTGGACAAGGGAGGG 59.014 63.158 0.00 0.00 0.00 4.30
928 954 0.475632 TTCTTGGAGGGGGAGAAGCA 60.476 55.000 0.00 0.00 0.00 3.91
939 965 0.320073 TGTACGCCGGTTTCTTGGAG 60.320 55.000 1.90 0.00 0.00 3.86
995 1067 4.838423 TGGAGAAGAGGTTGTTCATGTCTA 59.162 41.667 0.00 0.00 0.00 2.59
998 1070 3.808618 GCTGGAGAAGAGGTTGTTCATGT 60.809 47.826 0.00 0.00 0.00 3.21
1199 1283 2.027625 GACTTGCCCGACTCGTTGG 61.028 63.158 0.00 0.00 0.00 3.77
1441 1525 3.855853 GCGGAGGGAGGAGAAGGC 61.856 72.222 0.00 0.00 0.00 4.35
1776 1860 2.337532 CGGTCCACGAACGACCTT 59.662 61.111 15.02 0.00 46.60 3.50
1777 1861 3.677648 CCGGTCCACGAACGACCT 61.678 66.667 15.02 0.00 46.60 3.85
1879 1963 7.733773 TGGGGATGACGATGATAAGTATAAT 57.266 36.000 0.00 0.00 0.00 1.28
1913 1997 0.031178 GCTGCTCTTGTTGGTGTTGG 59.969 55.000 0.00 0.00 0.00 3.77
1914 1998 0.740149 TGCTGCTCTTGTTGGTGTTG 59.260 50.000 0.00 0.00 0.00 3.33
1931 2015 1.280066 CTGCTGGTTGTTGTTGTTGC 58.720 50.000 0.00 0.00 0.00 4.17
1954 2038 2.124403 GGCAGGCAGATCCACAGG 60.124 66.667 0.00 0.00 37.29 4.00
1969 2053 2.281070 ATCATCATCGCCACGGGC 60.281 61.111 4.96 4.96 46.75 6.13
1970 2054 1.669115 GGATCATCATCGCCACGGG 60.669 63.158 0.00 0.00 0.00 5.28
1971 2055 2.023771 CGGATCATCATCGCCACGG 61.024 63.158 0.00 0.00 0.00 4.94
1972 2056 2.023771 CCGGATCATCATCGCCACG 61.024 63.158 0.00 0.00 0.00 4.94
1973 2057 1.669115 CCCGGATCATCATCGCCAC 60.669 63.158 0.73 0.00 0.00 5.01
1974 2058 2.743060 CCCGGATCATCATCGCCA 59.257 61.111 0.73 0.00 0.00 5.69
1975 2059 2.738213 AAGCCCGGATCATCATCGCC 62.738 60.000 0.73 0.00 0.00 5.54
1976 2060 1.302033 AAGCCCGGATCATCATCGC 60.302 57.895 0.73 0.00 0.00 4.58
1977 2061 1.572085 GCAAGCCCGGATCATCATCG 61.572 60.000 0.73 0.00 0.00 3.84
1978 2062 0.250640 AGCAAGCCCGGATCATCATC 60.251 55.000 0.73 0.00 0.00 2.92
1979 2063 0.184451 AAGCAAGCCCGGATCATCAT 59.816 50.000 0.73 0.00 0.00 2.45
1980 2064 0.749091 CAAGCAAGCCCGGATCATCA 60.749 55.000 0.73 0.00 0.00 3.07
1981 2065 2.028130 CAAGCAAGCCCGGATCATC 58.972 57.895 0.73 0.00 0.00 2.92
1989 2073 1.373873 GCAAGAAGCAAGCAAGCCC 60.374 57.895 0.00 0.00 44.79 5.19
2001 2085 1.110442 CCAACAACACCCAGCAAGAA 58.890 50.000 0.00 0.00 0.00 2.52
2059 2144 2.654912 CTCAACGAACCGCACGGAC 61.655 63.158 17.40 8.38 38.96 4.79
2095 2180 5.759273 ACGCACGGGCATTTTTACTAATATA 59.241 36.000 11.77 0.00 41.24 0.86
2099 2184 2.152830 ACGCACGGGCATTTTTACTAA 58.847 42.857 11.77 0.00 41.24 2.24
2154 2240 0.667453 TGTTGCGCAATGACACACAT 59.333 45.000 27.79 0.00 41.45 3.21
2206 2301 5.497464 TCAAATCCACACTTCATACTCCA 57.503 39.130 0.00 0.00 0.00 3.86
2486 2591 6.207614 TCTCCTCGTCATTCAATATGTCCTAG 59.792 42.308 0.00 0.00 0.00 3.02
2661 3474 0.534877 AACCGATGACAGCTGCAACA 60.535 50.000 15.27 12.32 0.00 3.33
2704 3517 4.285807 TGTCACAAACAAACCGATGAAG 57.714 40.909 0.00 0.00 34.03 3.02
2816 3633 3.772025 TGTTGTTTTGAATCTGTGGGGTT 59.228 39.130 0.00 0.00 0.00 4.11
2907 3728 2.126734 GCGTGCACCTGAACATGC 60.127 61.111 12.15 1.93 41.20 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.