Multiple sequence alignment - TraesCS5A01G424900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G424900 chr5A 100.000 7038 0 0 1 7038 610216950 610223987 0.000000e+00 12997.0
1 TraesCS5A01G424900 chr5B 93.357 6292 234 76 838 7034 602830988 602837190 0.000000e+00 9134.0
2 TraesCS5A01G424900 chr5D 93.650 3449 128 30 1181 4581 489178177 489181582 0.000000e+00 5072.0
3 TraesCS5A01G424900 chr5D 95.473 1745 50 9 5295 7035 489182315 489184034 0.000000e+00 2758.0
4 TraesCS5A01G424900 chr5D 96.750 677 17 2 4626 5298 489181577 489182252 0.000000e+00 1123.0
5 TraesCS5A01G424900 chr5D 93.720 207 10 2 844 1048 489177613 489177818 2.470000e-79 307.0
6 TraesCS5A01G424900 chr5D 82.335 334 40 16 257 576 445966715 445967043 9.000000e-69 272.0
7 TraesCS5A01G424900 chr5D 86.266 233 26 4 13 239 362194481 362194713 1.520000e-61 248.0
8 TraesCS5A01G424900 chr2D 81.633 441 63 11 229 655 556230827 556231263 4.040000e-92 350.0
9 TraesCS5A01G424900 chr2D 77.472 617 90 32 229 837 73131753 73132328 2.450000e-84 324.0
10 TraesCS5A01G424900 chr3B 78.450 529 74 26 229 745 15073956 15073456 6.860000e-80 309.0
11 TraesCS5A01G424900 chr7A 78.014 564 73 25 229 756 7145527 7146075 2.470000e-79 307.0
12 TraesCS5A01G424900 chr7A 77.336 503 74 28 301 778 20153030 20153517 1.950000e-65 261.0
13 TraesCS5A01G424900 chr7A 73.887 494 71 37 360 837 712087524 712087975 2.050000e-30 145.0
14 TraesCS5A01G424900 chr7A 100.000 30 0 0 809 838 468584102 468584131 1.000000e-03 56.5
15 TraesCS5A01G424900 chr1A 80.095 422 57 21 249 660 141429085 141428681 8.930000e-74 289.0
16 TraesCS5A01G424900 chr1A 77.348 181 25 8 664 838 568069844 568070014 7.520000e-15 93.5
17 TraesCS5A01G424900 chr7D 81.044 364 53 13 229 582 576096195 576095838 6.950000e-70 276.0
18 TraesCS5A01G424900 chr7D 77.049 122 15 10 720 839 188983940 188984050 2.740000e-04 58.4
19 TraesCS5A01G424900 chr7D 100.000 30 0 0 809 838 408566724 408566753 1.000000e-03 56.5
20 TraesCS5A01G424900 chr6A 81.525 341 40 20 257 582 181019375 181019043 7.000000e-65 259.0
21 TraesCS5A01G424900 chr7B 78.795 415 62 16 234 630 410484506 410484100 9.060000e-64 255.0
22 TraesCS5A01G424900 chr2A 81.325 332 45 14 257 579 733211008 733211331 3.260000e-63 254.0
23 TraesCS5A01G424900 chr4D 76.046 526 76 33 327 837 84606650 84607140 1.970000e-55 228.0
24 TraesCS5A01G424900 chr6D 75.911 494 74 31 353 837 438156451 438156908 1.990000e-50 211.0
25 TraesCS5A01G424900 chr3A 86.000 200 23 4 21 215 611185611 611185810 7.150000e-50 209.0
26 TraesCS5A01G424900 chr3A 73.458 373 61 23 257 606 694961309 694960952 9.660000e-19 106.0
27 TraesCS5A01G424900 chr1B 85.484 186 20 3 16 194 624662868 624662683 3.350000e-43 187.0
28 TraesCS5A01G424900 chr1D 84.472 161 19 2 40 194 454166433 454166273 3.400000e-33 154.0
29 TraesCS5A01G424900 chr4A 74.514 463 64 35 306 728 581925965 581925517 1.220000e-32 152.0
30 TraesCS5A01G424900 chr2B 80.952 126 9 9 489 609 260752474 260752589 1.260000e-12 86.1
31 TraesCS5A01G424900 chr2B 100.000 30 0 0 809 838 54284591 54284562 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G424900 chr5A 610216950 610223987 7037 False 12997 12997 100.00000 1 7038 1 chr5A.!!$F1 7037
1 TraesCS5A01G424900 chr5B 602830988 602837190 6202 False 9134 9134 93.35700 838 7034 1 chr5B.!!$F1 6196
2 TraesCS5A01G424900 chr5D 489177613 489184034 6421 False 2315 5072 94.89825 844 7035 4 chr5D.!!$F3 6191
3 TraesCS5A01G424900 chr2D 73131753 73132328 575 False 324 324 77.47200 229 837 1 chr2D.!!$F1 608
4 TraesCS5A01G424900 chr3B 15073456 15073956 500 True 309 309 78.45000 229 745 1 chr3B.!!$R1 516
5 TraesCS5A01G424900 chr7A 7145527 7146075 548 False 307 307 78.01400 229 756 1 chr7A.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.037232 AGTAACCACTCAAGAGGCGC 60.037 55.0 0.00 0.0 0.00 6.53 F
204 205 0.320421 GTAACCACTCAAGAGGCGCA 60.320 55.0 10.83 0.0 0.00 6.09 F
942 1206 0.515564 CGAAAACTCCCGCACGAAAT 59.484 50.0 0.00 0.0 0.00 2.17 F
1917 2434 0.035317 TTGCATTCAGCCTGTCTCGT 59.965 50.0 0.00 0.0 44.83 4.18 F
3500 4064 0.764271 TGGATTGCATCGCCTGGATA 59.236 50.0 0.00 0.0 32.85 2.59 F
4024 4594 0.251916 TCCATAACCAACCTCCAGCG 59.748 55.0 0.00 0.0 0.00 5.18 F
4589 5163 0.319211 CGGACTTGTTACGCTGTGGA 60.319 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 2323 0.468585 TGGTACACACGGACCAGAGT 60.469 55.000 0.00 0.00 40.87 3.24 R
1815 2324 2.347630 TGGTACACACGGACCAGAG 58.652 57.895 0.00 0.00 40.87 3.35 R
2598 3147 0.627451 TTGCCTAGACCGGGTAGAGA 59.373 55.000 6.32 0.00 0.00 3.10 R
3755 4325 0.036732 GATCAGGGACAGTGCAACCA 59.963 55.000 0.00 0.00 37.80 3.67 R
5202 5786 1.171308 CATGACAGGCTGTGGAAAGG 58.829 55.000 27.45 5.69 0.00 3.11 R
5580 6233 1.112113 TGCCCGAGTTATCAGGAGTC 58.888 55.000 0.00 0.00 0.00 3.36 R
6487 7151 0.976590 GAGTACAGGGTCCAGGGTCC 60.977 65.000 0.00 0.00 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.541953 AGGTTGTTAGAAGTTCTACGGTT 57.458 39.130 12.25 0.00 0.00 4.44
23 24 5.536260 AGGTTGTTAGAAGTTCTACGGTTC 58.464 41.667 12.25 3.44 0.00 3.62
24 25 4.687948 GGTTGTTAGAAGTTCTACGGTTCC 59.312 45.833 12.25 7.99 0.00 3.62
25 26 5.291971 GTTGTTAGAAGTTCTACGGTTCCA 58.708 41.667 12.25 0.89 0.00 3.53
26 27 4.874970 TGTTAGAAGTTCTACGGTTCCAC 58.125 43.478 12.25 6.86 0.00 4.02
27 28 4.586001 TGTTAGAAGTTCTACGGTTCCACT 59.414 41.667 12.25 0.00 0.00 4.00
28 29 5.069516 TGTTAGAAGTTCTACGGTTCCACTT 59.930 40.000 12.25 0.00 0.00 3.16
29 30 6.265196 TGTTAGAAGTTCTACGGTTCCACTTA 59.735 38.462 12.25 0.00 0.00 2.24
30 31 5.997384 AGAAGTTCTACGGTTCCACTTAT 57.003 39.130 2.75 0.00 0.00 1.73
31 32 8.462016 GTTAGAAGTTCTACGGTTCCACTTATA 58.538 37.037 12.25 0.00 0.00 0.98
32 33 7.657023 AGAAGTTCTACGGTTCCACTTATAT 57.343 36.000 2.75 0.00 0.00 0.86
33 34 7.490000 AGAAGTTCTACGGTTCCACTTATATG 58.510 38.462 2.75 0.00 0.00 1.78
34 35 6.158023 AGTTCTACGGTTCCACTTATATGG 57.842 41.667 0.00 0.00 41.57 2.74
46 47 7.733773 TCCACTTATATGGAAAGAGACAAGA 57.266 36.000 0.00 0.00 46.08 3.02
47 48 8.324191 TCCACTTATATGGAAAGAGACAAGAT 57.676 34.615 0.00 0.00 46.08 2.40
48 49 8.772250 TCCACTTATATGGAAAGAGACAAGATT 58.228 33.333 0.00 0.00 46.08 2.40
49 50 9.050601 CCACTTATATGGAAAGAGACAAGATTC 57.949 37.037 0.00 0.00 43.02 2.52
50 51 9.605275 CACTTATATGGAAAGAGACAAGATTCA 57.395 33.333 0.00 0.00 0.00 2.57
55 56 7.862512 ATGGAAAGAGACAAGATTCATCTTC 57.137 36.000 0.00 0.00 44.84 2.87
56 57 6.772605 TGGAAAGAGACAAGATTCATCTTCA 58.227 36.000 0.00 0.00 44.84 3.02
57 58 7.400439 TGGAAAGAGACAAGATTCATCTTCAT 58.600 34.615 0.00 0.00 44.84 2.57
58 59 7.886970 TGGAAAGAGACAAGATTCATCTTCATT 59.113 33.333 0.00 0.00 44.84 2.57
59 60 8.182881 GGAAAGAGACAAGATTCATCTTCATTG 58.817 37.037 0.00 0.00 44.84 2.82
60 61 6.680874 AGAGACAAGATTCATCTTCATTGC 57.319 37.500 0.00 0.00 44.84 3.56
61 62 6.416415 AGAGACAAGATTCATCTTCATTGCT 58.584 36.000 0.00 0.00 44.84 3.91
62 63 6.885376 AGAGACAAGATTCATCTTCATTGCTT 59.115 34.615 0.00 0.00 44.84 3.91
63 64 6.853720 AGACAAGATTCATCTTCATTGCTTG 58.146 36.000 0.00 0.00 44.84 4.01
64 65 6.433404 AGACAAGATTCATCTTCATTGCTTGT 59.567 34.615 0.00 0.00 44.84 3.16
65 66 6.618811 ACAAGATTCATCTTCATTGCTTGTC 58.381 36.000 0.00 0.00 44.84 3.18
66 67 6.208007 ACAAGATTCATCTTCATTGCTTGTCA 59.792 34.615 0.00 0.00 44.84 3.58
67 68 6.192234 AGATTCATCTTCATTGCTTGTCAC 57.808 37.500 0.00 0.00 31.97 3.67
68 69 4.408993 TTCATCTTCATTGCTTGTCACG 57.591 40.909 0.00 0.00 0.00 4.35
69 70 2.743664 TCATCTTCATTGCTTGTCACGG 59.256 45.455 0.00 0.00 0.00 4.94
70 71 2.542020 TCTTCATTGCTTGTCACGGA 57.458 45.000 0.00 0.00 0.00 4.69
71 72 3.057969 TCTTCATTGCTTGTCACGGAT 57.942 42.857 0.00 0.00 0.00 4.18
72 73 3.411446 TCTTCATTGCTTGTCACGGATT 58.589 40.909 0.00 0.00 0.00 3.01
73 74 3.820467 TCTTCATTGCTTGTCACGGATTT 59.180 39.130 0.00 0.00 0.00 2.17
74 75 3.829886 TCATTGCTTGTCACGGATTTC 57.170 42.857 0.00 0.00 0.00 2.17
75 76 2.159430 TCATTGCTTGTCACGGATTTCG 59.841 45.455 0.00 0.00 45.88 3.46
76 77 1.872388 TTGCTTGTCACGGATTTCGA 58.128 45.000 0.00 0.00 42.43 3.71
77 78 2.093306 TGCTTGTCACGGATTTCGAT 57.907 45.000 0.00 0.00 42.43 3.59
78 79 2.422597 TGCTTGTCACGGATTTCGATT 58.577 42.857 0.00 0.00 42.43 3.34
79 80 2.415168 TGCTTGTCACGGATTTCGATTC 59.585 45.455 0.00 0.00 42.43 2.52
80 81 2.673368 GCTTGTCACGGATTTCGATTCT 59.327 45.455 0.00 0.00 42.43 2.40
81 82 3.125316 GCTTGTCACGGATTTCGATTCTT 59.875 43.478 0.00 0.00 42.43 2.52
82 83 4.725169 GCTTGTCACGGATTTCGATTCTTC 60.725 45.833 0.00 0.00 42.43 2.87
83 84 3.920446 TGTCACGGATTTCGATTCTTCA 58.080 40.909 0.00 0.00 42.43 3.02
84 85 3.678072 TGTCACGGATTTCGATTCTTCAC 59.322 43.478 0.00 0.00 42.43 3.18
85 86 3.678072 GTCACGGATTTCGATTCTTCACA 59.322 43.478 0.00 0.00 42.43 3.58
86 87 4.330074 GTCACGGATTTCGATTCTTCACAT 59.670 41.667 0.00 0.00 42.43 3.21
87 88 5.518847 GTCACGGATTTCGATTCTTCACATA 59.481 40.000 0.00 0.00 42.43 2.29
88 89 6.035650 GTCACGGATTTCGATTCTTCACATAA 59.964 38.462 0.00 0.00 42.43 1.90
89 90 6.592220 TCACGGATTTCGATTCTTCACATAAA 59.408 34.615 0.00 0.00 42.43 1.40
90 91 7.118535 TCACGGATTTCGATTCTTCACATAAAA 59.881 33.333 0.00 0.00 42.43 1.52
91 92 7.216317 CACGGATTTCGATTCTTCACATAAAAC 59.784 37.037 0.00 0.00 42.43 2.43
92 93 7.119262 ACGGATTTCGATTCTTCACATAAAACT 59.881 33.333 0.00 0.00 42.43 2.66
93 94 7.962918 CGGATTTCGATTCTTCACATAAAACTT 59.037 33.333 0.00 0.00 42.43 2.66
94 95 9.626045 GGATTTCGATTCTTCACATAAAACTTT 57.374 29.630 0.00 0.00 0.00 2.66
97 98 9.445786 TTTCGATTCTTCACATAAAACTTTGAC 57.554 29.630 0.00 0.00 0.00 3.18
98 99 7.581476 TCGATTCTTCACATAAAACTTTGACC 58.419 34.615 0.00 0.00 0.00 4.02
99 100 7.227711 TCGATTCTTCACATAAAACTTTGACCA 59.772 33.333 0.00 0.00 0.00 4.02
100 101 7.860373 CGATTCTTCACATAAAACTTTGACCAA 59.140 33.333 0.00 0.00 0.00 3.67
101 102 9.528018 GATTCTTCACATAAAACTTTGACCAAA 57.472 29.630 0.00 0.00 0.00 3.28
112 113 3.401033 TTTGACCAAAGAGCTCATCGA 57.599 42.857 17.77 2.38 0.00 3.59
113 114 3.616956 TTGACCAAAGAGCTCATCGAT 57.383 42.857 17.77 0.00 0.00 3.59
114 115 2.897436 TGACCAAAGAGCTCATCGATG 58.103 47.619 19.61 19.61 0.00 3.84
115 116 2.497273 TGACCAAAGAGCTCATCGATGA 59.503 45.455 25.80 25.80 35.16 2.92
116 117 3.133542 TGACCAAAGAGCTCATCGATGAT 59.866 43.478 27.43 14.74 36.02 2.45
117 118 3.464907 ACCAAAGAGCTCATCGATGATG 58.535 45.455 27.43 20.26 41.00 3.07
118 119 3.118482 ACCAAAGAGCTCATCGATGATGT 60.118 43.478 27.43 17.61 40.55 3.06
119 120 3.247886 CCAAAGAGCTCATCGATGATGTG 59.752 47.826 27.43 17.33 40.55 3.21
120 121 3.815856 AAGAGCTCATCGATGATGTGT 57.184 42.857 27.43 13.75 40.55 3.72
121 122 3.095102 AGAGCTCATCGATGATGTGTG 57.905 47.619 27.43 16.55 40.55 3.82
122 123 1.526041 GAGCTCATCGATGATGTGTGC 59.474 52.381 27.43 24.51 40.55 4.57
123 124 1.134610 AGCTCATCGATGATGTGTGCA 60.135 47.619 27.43 3.81 40.55 4.57
124 125 1.871676 GCTCATCGATGATGTGTGCAT 59.128 47.619 27.43 0.00 40.55 3.96
125 126 2.349532 GCTCATCGATGATGTGTGCATG 60.350 50.000 27.43 13.80 40.55 4.06
126 127 2.870411 CTCATCGATGATGTGTGCATGT 59.130 45.455 27.43 0.00 40.55 3.21
127 128 2.610374 TCATCGATGATGTGTGCATGTG 59.390 45.455 23.99 0.00 40.55 3.21
128 129 0.728542 TCGATGATGTGTGCATGTGC 59.271 50.000 0.00 0.00 42.50 4.57
129 130 0.730840 CGATGATGTGTGCATGTGCT 59.269 50.000 6.55 0.00 42.66 4.40
130 131 1.935199 CGATGATGTGTGCATGTGCTA 59.065 47.619 6.55 0.00 42.66 3.49
131 132 2.352342 CGATGATGTGTGCATGTGCTAA 59.648 45.455 6.55 0.00 42.66 3.09
132 133 3.688272 GATGATGTGTGCATGTGCTAAC 58.312 45.455 6.55 5.30 42.66 2.34
133 134 2.502295 TGATGTGTGCATGTGCTAACA 58.498 42.857 13.09 13.09 42.66 2.41
134 135 2.883386 TGATGTGTGCATGTGCTAACAA 59.117 40.909 14.19 1.18 40.46 2.83
135 136 3.317430 TGATGTGTGCATGTGCTAACAAA 59.683 39.130 14.19 4.63 40.46 2.83
136 137 3.790152 TGTGTGCATGTGCTAACAAAA 57.210 38.095 6.55 0.00 40.46 2.44
137 138 3.704512 TGTGTGCATGTGCTAACAAAAG 58.295 40.909 6.55 0.00 40.46 2.27
138 139 3.052036 GTGTGCATGTGCTAACAAAAGG 58.948 45.455 6.55 0.00 40.46 3.11
139 140 2.692557 TGTGCATGTGCTAACAAAAGGT 59.307 40.909 6.55 0.00 40.46 3.50
140 141 3.052036 GTGCATGTGCTAACAAAAGGTG 58.948 45.455 6.55 0.00 40.46 4.00
141 142 2.954989 TGCATGTGCTAACAAAAGGTGA 59.045 40.909 6.55 0.00 40.46 4.02
142 143 3.382865 TGCATGTGCTAACAAAAGGTGAA 59.617 39.130 6.55 0.00 40.46 3.18
143 144 3.735746 GCATGTGCTAACAAAAGGTGAAC 59.264 43.478 0.00 0.00 40.46 3.18
144 145 4.736168 GCATGTGCTAACAAAAGGTGAACA 60.736 41.667 0.00 0.00 40.46 3.18
145 146 5.347342 CATGTGCTAACAAAAGGTGAACAA 58.653 37.500 0.00 0.00 40.46 2.83
146 147 5.392767 TGTGCTAACAAAAGGTGAACAAA 57.607 34.783 0.00 0.00 31.82 2.83
147 148 5.406649 TGTGCTAACAAAAGGTGAACAAAG 58.593 37.500 0.00 0.00 31.82 2.77
148 149 4.267690 GTGCTAACAAAAGGTGAACAAAGC 59.732 41.667 0.00 0.00 0.00 3.51
149 150 4.081972 TGCTAACAAAAGGTGAACAAAGCA 60.082 37.500 0.00 0.00 34.14 3.91
150 151 4.867608 GCTAACAAAAGGTGAACAAAGCAA 59.132 37.500 0.00 0.00 0.00 3.91
151 152 5.220397 GCTAACAAAAGGTGAACAAAGCAAC 60.220 40.000 0.00 0.00 0.00 4.17
152 153 4.535526 ACAAAAGGTGAACAAAGCAACT 57.464 36.364 0.00 0.00 34.04 3.16
153 154 4.893608 ACAAAAGGTGAACAAAGCAACTT 58.106 34.783 0.00 0.00 44.67 2.66
154 155 4.690280 ACAAAAGGTGAACAAAGCAACTTG 59.310 37.500 0.00 0.00 42.12 3.16
155 156 4.799564 AAAGGTGAACAAAGCAACTTGA 57.200 36.364 0.00 0.00 42.12 3.02
156 157 4.799564 AAGGTGAACAAAGCAACTTGAA 57.200 36.364 0.00 0.00 41.45 2.69
157 158 5.343307 AAGGTGAACAAAGCAACTTGAAT 57.657 34.783 0.00 0.00 41.45 2.57
158 159 4.685924 AGGTGAACAAAGCAACTTGAATG 58.314 39.130 0.00 0.00 26.06 2.67
159 160 3.803778 GGTGAACAAAGCAACTTGAATGG 59.196 43.478 0.00 0.00 0.00 3.16
160 161 3.803778 GTGAACAAAGCAACTTGAATGGG 59.196 43.478 0.00 0.00 0.00 4.00
161 162 2.531522 ACAAAGCAACTTGAATGGGC 57.468 45.000 0.00 0.00 0.00 5.36
162 163 1.269726 ACAAAGCAACTTGAATGGGCG 60.270 47.619 0.00 0.00 0.00 6.13
163 164 0.318120 AAAGCAACTTGAATGGGCGG 59.682 50.000 0.00 0.00 0.00 6.13
164 165 0.539438 AAGCAACTTGAATGGGCGGA 60.539 50.000 0.00 0.00 0.00 5.54
165 166 0.962356 AGCAACTTGAATGGGCGGAG 60.962 55.000 0.00 0.00 0.00 4.63
166 167 0.960364 GCAACTTGAATGGGCGGAGA 60.960 55.000 0.00 0.00 0.00 3.71
167 168 0.804989 CAACTTGAATGGGCGGAGAC 59.195 55.000 0.00 0.00 0.00 3.36
168 169 0.400213 AACTTGAATGGGCGGAGACA 59.600 50.000 0.00 0.00 37.00 3.41
169 170 0.620556 ACTTGAATGGGCGGAGACAT 59.379 50.000 0.00 0.00 37.00 3.06
170 171 1.837439 ACTTGAATGGGCGGAGACATA 59.163 47.619 0.00 0.00 37.00 2.29
171 172 2.213499 CTTGAATGGGCGGAGACATAC 58.787 52.381 0.00 0.00 37.00 2.39
172 173 0.468226 TGAATGGGCGGAGACATACC 59.532 55.000 0.00 0.00 37.00 2.73
173 174 0.250338 GAATGGGCGGAGACATACCC 60.250 60.000 0.00 0.00 37.00 3.69
174 175 2.040009 AATGGGCGGAGACATACCCG 62.040 60.000 0.00 0.00 46.02 5.28
175 176 3.925090 GGGCGGAGACATACCCGG 61.925 72.222 0.00 0.00 45.42 5.73
177 178 3.845259 GCGGAGACATACCCGGCA 61.845 66.667 0.00 0.00 45.42 5.69
178 179 2.106332 CGGAGACATACCCGGCAC 59.894 66.667 0.00 0.00 41.89 5.01
179 180 2.504519 GGAGACATACCCGGCACC 59.495 66.667 0.00 0.00 0.00 5.01
180 181 2.106332 GAGACATACCCGGCACCG 59.894 66.667 1.02 1.02 39.44 4.94
181 182 4.157120 AGACATACCCGGCACCGC 62.157 66.667 2.83 0.00 38.24 5.68
182 183 4.460683 GACATACCCGGCACCGCA 62.461 66.667 2.83 0.00 38.24 5.69
183 184 4.467084 ACATACCCGGCACCGCAG 62.467 66.667 2.83 0.00 38.24 5.18
184 185 4.155733 CATACCCGGCACCGCAGA 62.156 66.667 2.83 0.00 38.24 4.26
185 186 3.849951 ATACCCGGCACCGCAGAG 61.850 66.667 2.83 0.00 38.24 3.35
187 188 3.942377 TACCCGGCACCGCAGAGTA 62.942 63.158 2.83 0.00 38.24 2.59
188 189 4.077184 CCCGGCACCGCAGAGTAA 62.077 66.667 2.83 0.00 38.24 2.24
189 190 2.813908 CCGGCACCGCAGAGTAAC 60.814 66.667 2.83 0.00 38.24 2.50
190 191 2.813908 CGGCACCGCAGAGTAACC 60.814 66.667 0.00 0.00 0.00 2.85
191 192 2.345991 GGCACCGCAGAGTAACCA 59.654 61.111 0.00 0.00 0.00 3.67
192 193 2.033194 GGCACCGCAGAGTAACCAC 61.033 63.158 0.00 0.00 0.00 4.16
193 194 1.004918 GCACCGCAGAGTAACCACT 60.005 57.895 0.00 0.00 37.87 4.00
203 204 0.037232 AGTAACCACTCAAGAGGCGC 60.037 55.000 0.00 0.00 0.00 6.53
204 205 0.320421 GTAACCACTCAAGAGGCGCA 60.320 55.000 10.83 0.00 0.00 6.09
205 206 0.320421 TAACCACTCAAGAGGCGCAC 60.320 55.000 10.83 2.06 0.00 5.34
206 207 2.743928 CCACTCAAGAGGCGCACC 60.744 66.667 10.83 0.00 0.00 5.01
207 208 2.031012 CACTCAAGAGGCGCACCA 59.969 61.111 10.83 0.00 39.06 4.17
208 209 2.031516 CACTCAAGAGGCGCACCAG 61.032 63.158 10.83 0.00 39.06 4.00
209 210 2.435586 CTCAAGAGGCGCACCAGG 60.436 66.667 10.83 0.00 39.06 4.45
210 211 3.965539 CTCAAGAGGCGCACCAGGG 62.966 68.421 10.83 0.00 39.06 4.45
211 212 4.335647 CAAGAGGCGCACCAGGGT 62.336 66.667 10.83 0.00 39.06 4.34
227 228 4.814294 GTGCGCCCCGACCACTAG 62.814 72.222 4.18 0.00 0.00 2.57
244 245 4.377022 CCACTAGTACACGTTCAACATTGC 60.377 45.833 0.00 0.00 0.00 3.56
245 246 2.941891 AGTACACGTTCAACATTGCG 57.058 45.000 0.00 0.00 0.00 4.85
471 648 9.737427 TCGACATTTTTAAATACTTTTTCAGCA 57.263 25.926 0.00 0.00 0.00 4.41
493 670 9.791820 CAGCATTTTTCATATACTCATTCAACA 57.208 29.630 0.00 0.00 0.00 3.33
799 1061 4.899239 CGAGCGCATCCCCCTGTC 62.899 72.222 11.47 0.00 0.00 3.51
800 1062 3.474570 GAGCGCATCCCCCTGTCT 61.475 66.667 11.47 0.00 0.00 3.41
801 1063 3.453070 GAGCGCATCCCCCTGTCTC 62.453 68.421 11.47 0.00 0.00 3.36
802 1064 4.899239 GCGCATCCCCCTGTCTCG 62.899 72.222 0.30 0.00 0.00 4.04
803 1065 4.227134 CGCATCCCCCTGTCTCGG 62.227 72.222 0.00 0.00 0.00 4.63
804 1066 3.083997 GCATCCCCCTGTCTCGGT 61.084 66.667 0.00 0.00 0.00 4.69
805 1067 2.670148 GCATCCCCCTGTCTCGGTT 61.670 63.158 0.00 0.00 0.00 4.44
806 1068 1.991230 CATCCCCCTGTCTCGGTTT 59.009 57.895 0.00 0.00 0.00 3.27
807 1069 1.200519 CATCCCCCTGTCTCGGTTTA 58.799 55.000 0.00 0.00 0.00 2.01
854 1116 4.814294 GAGCATCCCCGCGTTCGT 62.814 66.667 4.92 0.00 36.85 3.85
883 1147 3.896648 TTTGCTTCGTCTTTGCCTAAG 57.103 42.857 0.00 0.00 35.04 2.18
920 1184 1.497722 GTCTTCCGCGGCAGAAAAG 59.502 57.895 28.98 21.60 0.00 2.27
942 1206 0.515564 CGAAAACTCCCGCACGAAAT 59.484 50.000 0.00 0.00 0.00 2.17
969 1233 1.269448 CAAATCCTCAAACCACACCGG 59.731 52.381 0.00 0.00 42.50 5.28
979 1243 3.087253 CACACCGGCCTCCCCATA 61.087 66.667 0.00 0.00 0.00 2.74
1214 1705 2.185310 CTAACCCTCGCCCACAAGCT 62.185 60.000 0.00 0.00 0.00 3.74
1302 1793 3.168528 AAGTGCGGGGACACCAGT 61.169 61.111 0.00 0.00 41.67 4.00
1549 2058 6.662755 AGTATCAGCCCTCATTGTTAAATCA 58.337 36.000 0.00 0.00 0.00 2.57
1581 2090 2.270352 ACCTTGTGCATTTCGGAGAA 57.730 45.000 0.00 0.00 45.90 2.87
1627 2136 4.381185 CCATGTGGTCTTGTGATTTGGATG 60.381 45.833 0.00 0.00 0.00 3.51
1643 2152 1.987807 GATGCCCTGAGCTAGCCCAA 61.988 60.000 12.13 0.00 44.23 4.12
1695 2204 0.606401 AAGTGCAATGGTCGTCTGGG 60.606 55.000 0.00 0.00 0.00 4.45
1710 2219 6.463331 GGTCGTCTGGGGATGTAACAATATTA 60.463 42.308 0.00 0.00 0.00 0.98
1743 2252 4.724074 ATCAAGTGCATGTATGGTTTGG 57.276 40.909 0.00 0.00 0.00 3.28
1745 2254 3.255395 TCAAGTGCATGTATGGTTTGGTG 59.745 43.478 0.00 0.00 0.00 4.17
1788 2297 7.714813 TGCATTTATACTGCAGCTGATAGTTTA 59.285 33.333 23.46 18.19 44.30 2.01
1795 2304 5.711976 ACTGCAGCTGATAGTTTAACCATTT 59.288 36.000 20.43 0.00 0.00 2.32
1796 2305 6.209391 ACTGCAGCTGATAGTTTAACCATTTT 59.791 34.615 20.43 0.00 0.00 1.82
1800 2309 7.274250 GCAGCTGATAGTTTAACCATTTTTCAG 59.726 37.037 20.43 0.00 33.07 3.02
1814 2323 6.265196 ACCATTTTTCAGTTCTGATGTGCTTA 59.735 34.615 3.28 0.00 0.00 3.09
1815 2324 6.583806 CCATTTTTCAGTTCTGATGTGCTTAC 59.416 38.462 3.28 0.00 0.00 2.34
1816 2325 6.942532 TTTTTCAGTTCTGATGTGCTTACT 57.057 33.333 3.28 0.00 0.00 2.24
1817 2326 6.545504 TTTTCAGTTCTGATGTGCTTACTC 57.454 37.500 3.28 0.00 0.00 2.59
1818 2327 5.474578 TTCAGTTCTGATGTGCTTACTCT 57.525 39.130 3.28 0.00 0.00 3.24
1819 2328 4.814147 TCAGTTCTGATGTGCTTACTCTG 58.186 43.478 0.00 0.00 0.00 3.35
1820 2329 3.931468 CAGTTCTGATGTGCTTACTCTGG 59.069 47.826 0.00 0.00 0.00 3.86
1821 2330 3.580458 AGTTCTGATGTGCTTACTCTGGT 59.420 43.478 0.00 0.00 0.00 4.00
1822 2331 3.876274 TCTGATGTGCTTACTCTGGTC 57.124 47.619 0.00 0.00 0.00 4.02
1823 2332 2.497675 TCTGATGTGCTTACTCTGGTCC 59.502 50.000 0.00 0.00 0.00 4.46
1824 2333 1.204704 TGATGTGCTTACTCTGGTCCG 59.795 52.381 0.00 0.00 0.00 4.79
1825 2334 1.204941 GATGTGCTTACTCTGGTCCGT 59.795 52.381 0.00 0.00 0.00 4.69
1826 2335 0.317160 TGTGCTTACTCTGGTCCGTG 59.683 55.000 0.00 0.00 0.00 4.94
1827 2336 0.317479 GTGCTTACTCTGGTCCGTGT 59.683 55.000 0.00 0.00 0.00 4.49
1828 2337 0.317160 TGCTTACTCTGGTCCGTGTG 59.683 55.000 0.00 0.00 0.00 3.82
1829 2338 0.317479 GCTTACTCTGGTCCGTGTGT 59.683 55.000 0.00 0.00 0.00 3.72
1841 2350 3.071479 GTCCGTGTGTACCATTGTTCAT 58.929 45.455 0.00 0.00 0.00 2.57
1864 2373 4.160252 TGGCAAATCTTTATTTCTCCTGCC 59.840 41.667 2.33 2.33 41.41 4.85
1870 2379 6.705863 ATCTTTATTTCTCCTGCCATTGAC 57.294 37.500 0.00 0.00 0.00 3.18
1907 2416 6.748658 CCACTGTGTAATAATGTTGCATTCAG 59.251 38.462 7.08 2.05 0.00 3.02
1909 2418 5.649557 TGTGTAATAATGTTGCATTCAGCC 58.350 37.500 0.00 0.00 44.83 4.85
1917 2434 0.035317 TTGCATTCAGCCTGTCTCGT 59.965 50.000 0.00 0.00 44.83 4.18
1919 2436 1.281899 GCATTCAGCCTGTCTCGTAC 58.718 55.000 0.00 0.00 37.23 3.67
1995 2512 2.028420 TTCTCCATGCTGGTTGATCG 57.972 50.000 2.68 0.00 39.03 3.69
2073 2590 6.096141 TGGAGAAGTTAGTTTTGCAAACATGA 59.904 34.615 12.39 0.00 0.00 3.07
2146 2668 7.511959 AGTTTGGTTTAGAAGAACATCCTTC 57.488 36.000 0.00 0.00 42.07 3.46
2199 2721 5.808042 ATTGCAAGAAGCTGTAGTACATG 57.192 39.130 4.94 0.00 45.94 3.21
2311 2833 4.263506 GGGTGCTTGATGGGCTATATAAGT 60.264 45.833 8.43 0.00 0.00 2.24
2499 3021 6.258068 GGCGTATCTCTGTAGCTTTTAAATGT 59.742 38.462 0.00 0.00 0.00 2.71
2609 3158 1.794714 ATGCATCTTCTCTACCCGGT 58.205 50.000 0.00 0.00 0.00 5.28
2629 3178 4.625742 CGGTCTAGGCAAATATTACATCCG 59.374 45.833 0.00 0.00 0.00 4.18
2633 3182 7.658575 GGTCTAGGCAAATATTACATCCGTTTA 59.341 37.037 0.00 0.00 0.00 2.01
2634 3183 9.216117 GTCTAGGCAAATATTACATCCGTTTAT 57.784 33.333 0.00 0.00 0.00 1.40
2901 3451 4.252570 TCTTTCCCAAACACTTAACCCA 57.747 40.909 0.00 0.00 0.00 4.51
2925 3475 7.561356 CCAAAAAGACCTTGGAATAGGATATGT 59.439 37.037 0.00 0.00 45.31 2.29
3081 3633 7.203255 AGGCATTTTACAGAGTGTCTTAAAC 57.797 36.000 0.00 0.00 0.00 2.01
3246 3801 2.957402 TGAGCTGGAACACCAATTCT 57.043 45.000 0.00 0.00 32.95 2.40
3408 3972 3.146066 GGCACACAAGAGTATGAAACCA 58.854 45.455 0.00 0.00 0.00 3.67
3500 4064 0.764271 TGGATTGCATCGCCTGGATA 59.236 50.000 0.00 0.00 32.85 2.59
3512 4076 2.486191 CGCCTGGATAAGATTCCTGCTT 60.486 50.000 0.00 0.00 36.68 3.91
3515 4079 4.688321 GCCTGGATAAGATTCCTGCTTTCT 60.688 45.833 0.00 0.00 36.68 2.52
3541 4105 6.510157 GCCTACAGTATGATGTTTGTCATTCG 60.510 42.308 0.00 0.00 39.69 3.34
3606 4170 2.680913 GCCTGTAGTGCACTTGCCG 61.681 63.158 27.06 14.14 41.18 5.69
3608 4172 1.005037 CTGTAGTGCACTTGCCGGA 60.005 57.895 27.06 1.88 41.18 5.14
3692 4256 1.379576 GCCTCCTCTGCCATTTGCT 60.380 57.895 0.00 0.00 42.00 3.91
3708 4272 3.349006 CTGCACTGAAAGCGCCGT 61.349 61.111 2.29 0.00 42.50 5.68
3709 4273 3.300667 CTGCACTGAAAGCGCCGTC 62.301 63.158 2.29 1.53 42.50 4.79
3710 4274 3.345808 GCACTGAAAGCGCCGTCA 61.346 61.111 2.29 7.17 35.57 4.35
3711 4275 2.856032 CACTGAAAGCGCCGTCAG 59.144 61.111 27.58 27.58 45.59 3.51
3713 4277 4.571250 CTGAAAGCGCCGTCAGTA 57.429 55.556 23.32 0.00 37.16 2.74
3755 4325 4.728110 TGCGCCTGCCATTGCTCT 62.728 61.111 4.18 0.00 41.78 4.09
3957 4527 6.151985 TGAGCCTGTTGTTTGAGTTTTCTTTA 59.848 34.615 0.00 0.00 0.00 1.85
4024 4594 0.251916 TCCATAACCAACCTCCAGCG 59.748 55.000 0.00 0.00 0.00 5.18
4193 4763 6.127479 CCCAAATTGGAGATTTCATTCCGTAA 60.127 38.462 14.62 0.00 40.96 3.18
4506 5076 3.772387 TCTGGACATTTTATGCCCAACA 58.228 40.909 0.00 0.00 42.43 3.33
4540 5114 4.582240 TCTTTGATTACATGGTTGTGTGCA 59.418 37.500 0.00 0.00 36.53 4.57
4582 5156 1.635844 TATGCTGCGGACTTGTTACG 58.364 50.000 0.00 0.00 0.00 3.18
4588 5162 2.150424 CGGACTTGTTACGCTGTGG 58.850 57.895 0.00 0.00 0.00 4.17
4589 5163 0.319211 CGGACTTGTTACGCTGTGGA 60.319 55.000 0.00 0.00 0.00 4.02
4590 5164 1.671850 CGGACTTGTTACGCTGTGGAT 60.672 52.381 0.00 0.00 0.00 3.41
4906 5490 8.450964 TGCAGTTATGAGTTAAGATTTAGTTGC 58.549 33.333 0.00 0.00 0.00 4.17
5020 5604 7.227512 GGGTTCAACTCAATTATTCTCGATCAT 59.772 37.037 0.00 0.00 0.00 2.45
5090 5674 1.405391 CGGATATGCATGGCCGACATA 60.405 52.381 27.90 12.85 46.29 2.29
5202 5786 3.118261 TCTTTCATGGTATCTGGAGCACC 60.118 47.826 0.00 0.00 0.00 5.01
5340 5990 7.553881 TTGTTGCCTATGTAGCTCTTTATTC 57.446 36.000 0.00 0.00 0.00 1.75
5440 6090 9.905713 TTCCTATATGCAGTAGATCTTTTTGTT 57.094 29.630 0.00 0.00 0.00 2.83
5548 6201 4.513442 TGATATTCCTTGTTCCCTTCACG 58.487 43.478 0.00 0.00 0.00 4.35
5730 6383 1.133823 ACTGCAAGGTGGTTCATCACA 60.134 47.619 0.00 0.00 39.30 3.58
5734 6387 3.505680 TGCAAGGTGGTTCATCACAATAC 59.494 43.478 0.00 0.00 39.27 1.89
5763 6416 0.470268 GCTACCCCCACCAACCAAAA 60.470 55.000 0.00 0.00 0.00 2.44
5797 6450 2.818432 CTCTTCAGGCTGCTTCAAATGT 59.182 45.455 10.34 0.00 0.00 2.71
5837 6490 1.373570 GAAGGACTGCCCGAATCAAG 58.626 55.000 0.00 0.00 40.87 3.02
6142 6795 2.023041 GTACGCTCTCTCGCCGAC 59.977 66.667 0.00 0.00 0.00 4.79
6188 6841 3.149005 AGTTCCAGCAAACGGGATTTA 57.851 42.857 0.00 0.00 40.09 1.40
6356 7009 7.066766 AGCTCCATGTTCATGTTATCTCTTTTC 59.933 37.037 11.13 0.00 0.00 2.29
6508 7175 0.252284 ACCCTGGACCCTGTACTCTG 60.252 60.000 0.00 0.00 0.00 3.35
6524 7191 9.250624 CCTGTACTCTGCAACTAAATAATACTC 57.749 37.037 0.00 0.00 0.00 2.59
6526 7193 8.464404 TGTACTCTGCAACTAAATAATACTCGT 58.536 33.333 0.00 0.00 0.00 4.18
6527 7194 9.941664 GTACTCTGCAACTAAATAATACTCGTA 57.058 33.333 0.00 0.00 0.00 3.43
6528 7195 8.853469 ACTCTGCAACTAAATAATACTCGTAC 57.147 34.615 0.00 0.00 0.00 3.67
6529 7196 8.684520 ACTCTGCAACTAAATAATACTCGTACT 58.315 33.333 0.00 0.00 0.00 2.73
6700 7368 7.037586 AGGATAGGAACAAATTAAGACTGACCA 60.038 37.037 0.00 0.00 0.00 4.02
6701 7369 7.610305 GGATAGGAACAAATTAAGACTGACCAA 59.390 37.037 0.00 0.00 0.00 3.67
6702 7370 9.178758 GATAGGAACAAATTAAGACTGACCAAT 57.821 33.333 0.00 0.00 0.00 3.16
6703 7371 7.839680 AGGAACAAATTAAGACTGACCAATT 57.160 32.000 0.00 0.00 0.00 2.32
6704 7372 7.661040 AGGAACAAATTAAGACTGACCAATTG 58.339 34.615 0.00 0.00 0.00 2.32
6705 7373 7.505585 AGGAACAAATTAAGACTGACCAATTGA 59.494 33.333 7.12 0.00 0.00 2.57
6706 7374 8.141268 GGAACAAATTAAGACTGACCAATTGAA 58.859 33.333 7.12 0.00 0.00 2.69
6707 7375 8.871686 AACAAATTAAGACTGACCAATTGAAC 57.128 30.769 7.12 0.91 0.00 3.18
6708 7376 7.138736 ACAAATTAAGACTGACCAATTGAACG 58.861 34.615 7.12 0.00 0.00 3.95
6709 7377 4.742438 TTAAGACTGACCAATTGAACGC 57.258 40.909 7.12 0.00 0.00 4.84
6710 7378 1.523758 AGACTGACCAATTGAACGCC 58.476 50.000 7.12 0.00 0.00 5.68
6711 7379 0.521735 GACTGACCAATTGAACGCCC 59.478 55.000 7.12 0.00 0.00 6.13
6712 7380 0.893727 ACTGACCAATTGAACGCCCC 60.894 55.000 7.12 0.00 0.00 5.80
6713 7381 0.893270 CTGACCAATTGAACGCCCCA 60.893 55.000 7.12 0.00 0.00 4.96
6714 7382 1.175983 TGACCAATTGAACGCCCCAC 61.176 55.000 7.12 0.00 0.00 4.61
6715 7383 1.873270 GACCAATTGAACGCCCCACC 61.873 60.000 7.12 0.00 0.00 4.61
6716 7384 2.645192 CCAATTGAACGCCCCACCC 61.645 63.158 7.12 0.00 0.00 4.61
6717 7385 1.606313 CAATTGAACGCCCCACCCT 60.606 57.895 0.00 0.00 0.00 4.34
6718 7386 0.322997 CAATTGAACGCCCCACCCTA 60.323 55.000 0.00 0.00 0.00 3.53
6719 7387 0.034477 AATTGAACGCCCCACCCTAG 60.034 55.000 0.00 0.00 0.00 3.02
6720 7388 1.921869 ATTGAACGCCCCACCCTAGG 61.922 60.000 0.06 0.06 0.00 3.02
6776 7450 3.198409 TGGTTCCTATATGCAGCAGTG 57.802 47.619 0.00 0.00 0.00 3.66
6857 7531 4.803426 CGCGGCTGTCCTGTCCTC 62.803 72.222 0.00 0.00 0.00 3.71
6863 7539 3.655810 CTGTCCTGTCCTCTGGCGC 62.656 68.421 0.00 0.00 33.50 6.53
6983 7659 1.153329 TTTGGCCGGCCATAGTACG 60.153 57.895 46.94 0.00 46.64 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.510349 GGAACCGTAGAACTTCTAACAACCT 60.510 44.000 0.00 0.00 29.58 3.50
1 2 4.687948 GGAACCGTAGAACTTCTAACAACC 59.312 45.833 0.00 0.00 29.58 3.77
2 3 5.176406 GTGGAACCGTAGAACTTCTAACAAC 59.824 44.000 0.00 0.00 29.58 3.32
3 4 5.069516 AGTGGAACCGTAGAACTTCTAACAA 59.930 40.000 0.00 0.00 37.80 2.83
4 5 4.586001 AGTGGAACCGTAGAACTTCTAACA 59.414 41.667 0.00 0.00 37.80 2.41
5 6 5.131594 AGTGGAACCGTAGAACTTCTAAC 57.868 43.478 0.00 0.00 37.80 2.34
6 7 5.796424 AAGTGGAACCGTAGAACTTCTAA 57.204 39.130 0.00 0.00 37.80 2.10
7 8 8.627403 CATATAAGTGGAACCGTAGAACTTCTA 58.373 37.037 0.00 0.00 37.80 2.10
8 9 5.997384 ATAAGTGGAACCGTAGAACTTCT 57.003 39.130 0.00 0.00 37.80 2.85
9 10 6.700520 CCATATAAGTGGAACCGTAGAACTTC 59.299 42.308 0.00 0.00 42.02 3.01
10 11 6.381994 TCCATATAAGTGGAACCGTAGAACTT 59.618 38.462 0.00 0.00 45.03 2.66
11 12 5.895534 TCCATATAAGTGGAACCGTAGAACT 59.104 40.000 0.00 0.00 45.03 3.01
12 13 6.152932 TCCATATAAGTGGAACCGTAGAAC 57.847 41.667 0.00 0.00 45.03 3.01
22 23 7.733773 TCTTGTCTCTTTCCATATAAGTGGA 57.266 36.000 0.00 0.00 46.28 4.02
23 24 8.970859 AATCTTGTCTCTTTCCATATAAGTGG 57.029 34.615 0.00 0.00 40.76 4.00
24 25 9.605275 TGAATCTTGTCTCTTTCCATATAAGTG 57.395 33.333 0.00 0.00 0.00 3.16
29 30 9.558396 GAAGATGAATCTTGTCTCTTTCCATAT 57.442 33.333 10.23 0.00 46.47 1.78
30 31 8.542926 TGAAGATGAATCTTGTCTCTTTCCATA 58.457 33.333 10.23 0.00 46.47 2.74
31 32 7.400439 TGAAGATGAATCTTGTCTCTTTCCAT 58.600 34.615 10.23 0.00 46.47 3.41
32 33 6.772605 TGAAGATGAATCTTGTCTCTTTCCA 58.227 36.000 10.23 0.00 46.47 3.53
33 34 7.862512 ATGAAGATGAATCTTGTCTCTTTCC 57.137 36.000 10.23 0.00 46.47 3.13
34 35 7.697291 GCAATGAAGATGAATCTTGTCTCTTTC 59.303 37.037 10.23 0.00 46.47 2.62
35 36 7.393796 AGCAATGAAGATGAATCTTGTCTCTTT 59.606 33.333 10.23 0.00 46.47 2.52
36 37 6.885376 AGCAATGAAGATGAATCTTGTCTCTT 59.115 34.615 10.23 0.00 46.47 2.85
37 38 6.416415 AGCAATGAAGATGAATCTTGTCTCT 58.584 36.000 10.23 0.00 46.47 3.10
38 39 6.680874 AGCAATGAAGATGAATCTTGTCTC 57.319 37.500 10.23 0.00 46.47 3.36
39 40 6.433404 ACAAGCAATGAAGATGAATCTTGTCT 59.567 34.615 10.23 0.00 46.47 3.41
40 41 6.618811 ACAAGCAATGAAGATGAATCTTGTC 58.381 36.000 10.23 0.00 46.47 3.18
41 42 6.208007 TGACAAGCAATGAAGATGAATCTTGT 59.792 34.615 10.23 4.25 46.47 3.16
42 43 6.527023 GTGACAAGCAATGAAGATGAATCTTG 59.473 38.462 10.23 0.00 46.47 3.02
44 45 5.163784 CGTGACAAGCAATGAAGATGAATCT 60.164 40.000 0.00 0.00 39.22 2.40
45 46 5.026462 CGTGACAAGCAATGAAGATGAATC 58.974 41.667 0.00 0.00 0.00 2.52
46 47 4.142534 CCGTGACAAGCAATGAAGATGAAT 60.143 41.667 0.00 0.00 0.00 2.57
47 48 3.189080 CCGTGACAAGCAATGAAGATGAA 59.811 43.478 0.00 0.00 0.00 2.57
48 49 2.743664 CCGTGACAAGCAATGAAGATGA 59.256 45.455 0.00 0.00 0.00 2.92
49 50 2.743664 TCCGTGACAAGCAATGAAGATG 59.256 45.455 0.00 0.00 0.00 2.90
50 51 3.057969 TCCGTGACAAGCAATGAAGAT 57.942 42.857 0.00 0.00 0.00 2.40
51 52 2.542020 TCCGTGACAAGCAATGAAGA 57.458 45.000 0.00 0.00 0.00 2.87
52 53 3.837213 AATCCGTGACAAGCAATGAAG 57.163 42.857 0.00 0.00 0.00 3.02
53 54 3.364864 CGAAATCCGTGACAAGCAATGAA 60.365 43.478 0.00 0.00 0.00 2.57
54 55 2.159430 CGAAATCCGTGACAAGCAATGA 59.841 45.455 0.00 0.00 0.00 2.57
55 56 2.159430 TCGAAATCCGTGACAAGCAATG 59.841 45.455 0.00 0.00 39.75 2.82
56 57 2.422597 TCGAAATCCGTGACAAGCAAT 58.577 42.857 0.00 0.00 39.75 3.56
57 58 1.872388 TCGAAATCCGTGACAAGCAA 58.128 45.000 0.00 0.00 39.75 3.91
58 59 2.093306 ATCGAAATCCGTGACAAGCA 57.907 45.000 0.00 0.00 39.75 3.91
59 60 2.673368 AGAATCGAAATCCGTGACAAGC 59.327 45.455 0.00 0.00 39.75 4.01
60 61 4.388773 TGAAGAATCGAAATCCGTGACAAG 59.611 41.667 0.00 0.00 39.75 3.16
61 62 4.151689 GTGAAGAATCGAAATCCGTGACAA 59.848 41.667 0.00 0.00 39.75 3.18
62 63 3.678072 GTGAAGAATCGAAATCCGTGACA 59.322 43.478 0.00 0.00 39.75 3.58
63 64 3.678072 TGTGAAGAATCGAAATCCGTGAC 59.322 43.478 0.00 0.00 39.75 3.67
64 65 3.920446 TGTGAAGAATCGAAATCCGTGA 58.080 40.909 0.00 0.00 39.75 4.35
65 66 4.864916 ATGTGAAGAATCGAAATCCGTG 57.135 40.909 0.00 0.00 39.75 4.94
66 67 6.978343 TTTATGTGAAGAATCGAAATCCGT 57.022 33.333 0.00 0.00 39.75 4.69
67 68 7.464358 AGTTTTATGTGAAGAATCGAAATCCG 58.536 34.615 0.00 0.00 40.25 4.18
68 69 9.626045 AAAGTTTTATGTGAAGAATCGAAATCC 57.374 29.630 0.00 0.00 0.00 3.01
71 72 9.445786 GTCAAAGTTTTATGTGAAGAATCGAAA 57.554 29.630 0.00 0.00 0.00 3.46
72 73 8.073768 GGTCAAAGTTTTATGTGAAGAATCGAA 58.926 33.333 0.00 0.00 0.00 3.71
73 74 7.227711 TGGTCAAAGTTTTATGTGAAGAATCGA 59.772 33.333 0.00 0.00 0.00 3.59
74 75 7.359595 TGGTCAAAGTTTTATGTGAAGAATCG 58.640 34.615 0.00 0.00 0.00 3.34
75 76 9.528018 TTTGGTCAAAGTTTTATGTGAAGAATC 57.472 29.630 0.00 0.00 0.00 2.52
76 77 9.533253 CTTTGGTCAAAGTTTTATGTGAAGAAT 57.467 29.630 13.58 0.00 42.02 2.40
77 78 8.744652 TCTTTGGTCAAAGTTTTATGTGAAGAA 58.255 29.630 19.13 0.00 45.88 2.52
78 79 8.287439 TCTTTGGTCAAAGTTTTATGTGAAGA 57.713 30.769 19.13 0.00 45.88 2.87
79 80 7.168135 GCTCTTTGGTCAAAGTTTTATGTGAAG 59.832 37.037 19.13 9.15 45.88 3.02
80 81 6.978080 GCTCTTTGGTCAAAGTTTTATGTGAA 59.022 34.615 19.13 0.46 45.88 3.18
81 82 6.321181 AGCTCTTTGGTCAAAGTTTTATGTGA 59.679 34.615 19.13 1.28 45.88 3.58
82 83 6.507023 AGCTCTTTGGTCAAAGTTTTATGTG 58.493 36.000 19.13 6.04 45.88 3.21
83 84 6.715347 AGCTCTTTGGTCAAAGTTTTATGT 57.285 33.333 19.13 1.40 45.88 2.29
95 96 3.170791 TCATCGATGAGCTCTTTGGTC 57.829 47.619 23.99 4.66 43.03 4.02
96 97 3.118482 ACATCATCGATGAGCTCTTTGGT 60.118 43.478 30.11 15.48 42.09 3.67
97 98 3.247886 CACATCATCGATGAGCTCTTTGG 59.752 47.826 30.11 13.85 42.09 3.28
98 99 3.869832 ACACATCATCGATGAGCTCTTTG 59.130 43.478 30.11 23.74 42.09 2.77
99 100 3.869832 CACACATCATCGATGAGCTCTTT 59.130 43.478 30.11 12.23 42.09 2.52
100 101 3.455327 CACACATCATCGATGAGCTCTT 58.545 45.455 30.11 12.95 42.09 2.85
101 102 2.802415 GCACACATCATCGATGAGCTCT 60.802 50.000 30.11 13.32 42.09 4.09
102 103 1.526041 GCACACATCATCGATGAGCTC 59.474 52.381 30.11 6.82 42.09 4.09
103 104 1.134610 TGCACACATCATCGATGAGCT 60.135 47.619 30.11 16.38 42.09 4.09
104 105 1.292992 TGCACACATCATCGATGAGC 58.707 50.000 30.11 26.08 42.09 4.26
105 106 2.870411 ACATGCACACATCATCGATGAG 59.130 45.455 30.11 23.20 42.09 2.90
106 107 2.610374 CACATGCACACATCATCGATGA 59.390 45.455 29.09 29.09 42.09 2.92
107 108 2.853281 GCACATGCACACATCATCGATG 60.853 50.000 19.61 19.61 42.12 3.84
108 109 1.332686 GCACATGCACACATCATCGAT 59.667 47.619 0.00 0.00 41.59 3.59
109 110 0.728542 GCACATGCACACATCATCGA 59.271 50.000 0.00 0.00 41.59 3.59
110 111 0.730840 AGCACATGCACACATCATCG 59.269 50.000 6.64 0.00 45.16 3.84
111 112 3.127376 TGTTAGCACATGCACACATCATC 59.873 43.478 6.64 0.00 45.16 2.92
112 113 3.083293 TGTTAGCACATGCACACATCAT 58.917 40.909 6.64 0.00 45.16 2.45
113 114 2.502295 TGTTAGCACATGCACACATCA 58.498 42.857 6.64 0.00 45.16 3.07
114 115 3.557577 TTGTTAGCACATGCACACATC 57.442 42.857 6.64 0.00 45.16 3.06
115 116 4.300803 CTTTTGTTAGCACATGCACACAT 58.699 39.130 6.64 0.00 45.16 3.21
116 117 3.490590 CCTTTTGTTAGCACATGCACACA 60.491 43.478 6.64 5.40 45.16 3.72
117 118 3.052036 CCTTTTGTTAGCACATGCACAC 58.948 45.455 6.64 2.73 45.16 3.82
118 119 2.692557 ACCTTTTGTTAGCACATGCACA 59.307 40.909 6.64 0.00 45.16 4.57
119 120 3.052036 CACCTTTTGTTAGCACATGCAC 58.948 45.455 6.64 0.00 45.16 4.57
120 121 2.954989 TCACCTTTTGTTAGCACATGCA 59.045 40.909 6.64 0.00 45.16 3.96
121 122 3.641437 TCACCTTTTGTTAGCACATGC 57.359 42.857 0.00 0.00 42.49 4.06
122 123 4.930963 TGTTCACCTTTTGTTAGCACATG 58.069 39.130 0.00 0.00 31.06 3.21
123 124 5.590530 TTGTTCACCTTTTGTTAGCACAT 57.409 34.783 0.00 0.00 31.06 3.21
124 125 5.392767 TTTGTTCACCTTTTGTTAGCACA 57.607 34.783 0.00 0.00 0.00 4.57
125 126 4.267690 GCTTTGTTCACCTTTTGTTAGCAC 59.732 41.667 0.00 0.00 0.00 4.40
126 127 4.081972 TGCTTTGTTCACCTTTTGTTAGCA 60.082 37.500 0.00 0.00 33.03 3.49
127 128 4.429108 TGCTTTGTTCACCTTTTGTTAGC 58.571 39.130 0.00 0.00 0.00 3.09
128 129 6.099341 AGTTGCTTTGTTCACCTTTTGTTAG 58.901 36.000 0.00 0.00 0.00 2.34
129 130 6.031751 AGTTGCTTTGTTCACCTTTTGTTA 57.968 33.333 0.00 0.00 0.00 2.41
130 131 4.893608 AGTTGCTTTGTTCACCTTTTGTT 58.106 34.783 0.00 0.00 0.00 2.83
131 132 4.535526 AGTTGCTTTGTTCACCTTTTGT 57.464 36.364 0.00 0.00 0.00 2.83
132 133 4.928615 TCAAGTTGCTTTGTTCACCTTTTG 59.071 37.500 0.00 0.00 0.00 2.44
133 134 5.146010 TCAAGTTGCTTTGTTCACCTTTT 57.854 34.783 0.00 0.00 0.00 2.27
134 135 4.799564 TCAAGTTGCTTTGTTCACCTTT 57.200 36.364 0.00 0.00 0.00 3.11
135 136 4.799564 TTCAAGTTGCTTTGTTCACCTT 57.200 36.364 0.00 0.00 0.00 3.50
136 137 4.441913 CCATTCAAGTTGCTTTGTTCACCT 60.442 41.667 0.00 0.00 0.00 4.00
137 138 3.803778 CCATTCAAGTTGCTTTGTTCACC 59.196 43.478 0.00 0.00 0.00 4.02
138 139 3.803778 CCCATTCAAGTTGCTTTGTTCAC 59.196 43.478 0.00 0.00 0.00 3.18
139 140 3.740764 GCCCATTCAAGTTGCTTTGTTCA 60.741 43.478 0.00 0.00 0.00 3.18
140 141 2.802247 GCCCATTCAAGTTGCTTTGTTC 59.198 45.455 0.00 0.00 0.00 3.18
141 142 2.802774 CGCCCATTCAAGTTGCTTTGTT 60.803 45.455 0.00 0.00 0.00 2.83
142 143 1.269726 CGCCCATTCAAGTTGCTTTGT 60.270 47.619 0.00 0.00 0.00 2.83
143 144 1.421382 CGCCCATTCAAGTTGCTTTG 58.579 50.000 0.00 0.00 0.00 2.77
144 145 0.318120 CCGCCCATTCAAGTTGCTTT 59.682 50.000 0.00 0.00 0.00 3.51
145 146 0.539438 TCCGCCCATTCAAGTTGCTT 60.539 50.000 0.00 0.00 0.00 3.91
146 147 0.962356 CTCCGCCCATTCAAGTTGCT 60.962 55.000 0.00 0.00 0.00 3.91
147 148 0.960364 TCTCCGCCCATTCAAGTTGC 60.960 55.000 0.00 0.00 0.00 4.17
148 149 0.804989 GTCTCCGCCCATTCAAGTTG 59.195 55.000 0.00 0.00 0.00 3.16
149 150 0.400213 TGTCTCCGCCCATTCAAGTT 59.600 50.000 0.00 0.00 0.00 2.66
150 151 0.620556 ATGTCTCCGCCCATTCAAGT 59.379 50.000 0.00 0.00 0.00 3.16
151 152 2.213499 GTATGTCTCCGCCCATTCAAG 58.787 52.381 0.00 0.00 0.00 3.02
152 153 1.134220 GGTATGTCTCCGCCCATTCAA 60.134 52.381 0.00 0.00 0.00 2.69
153 154 0.468226 GGTATGTCTCCGCCCATTCA 59.532 55.000 0.00 0.00 0.00 2.57
154 155 0.250338 GGGTATGTCTCCGCCCATTC 60.250 60.000 0.00 0.00 40.76 2.67
155 156 1.837090 GGGTATGTCTCCGCCCATT 59.163 57.895 0.00 0.00 40.76 3.16
156 157 2.507854 CGGGTATGTCTCCGCCCAT 61.508 63.158 0.00 0.00 41.11 4.00
157 158 3.151710 CGGGTATGTCTCCGCCCA 61.152 66.667 0.00 0.00 41.11 5.36
158 159 3.925090 CCGGGTATGTCTCCGCCC 61.925 72.222 0.00 0.00 44.45 6.13
159 160 4.603946 GCCGGGTATGTCTCCGCC 62.604 72.222 2.18 0.00 44.45 6.13
160 161 3.845259 TGCCGGGTATGTCTCCGC 61.845 66.667 2.18 0.00 44.45 5.54
161 162 2.106332 GTGCCGGGTATGTCTCCG 59.894 66.667 2.18 0.00 45.29 4.63
162 163 2.504519 GGTGCCGGGTATGTCTCC 59.495 66.667 2.18 0.00 0.00 3.71
163 164 2.106332 CGGTGCCGGGTATGTCTC 59.894 66.667 2.18 0.00 35.56 3.36
164 165 4.157120 GCGGTGCCGGGTATGTCT 62.157 66.667 12.82 0.00 40.19 3.41
165 166 4.460683 TGCGGTGCCGGGTATGTC 62.461 66.667 12.82 0.00 40.19 3.06
166 167 4.467084 CTGCGGTGCCGGGTATGT 62.467 66.667 12.82 0.00 40.19 2.29
167 168 4.155733 TCTGCGGTGCCGGGTATG 62.156 66.667 12.82 0.00 40.19 2.39
168 169 3.849951 CTCTGCGGTGCCGGGTAT 61.850 66.667 12.82 0.00 40.19 2.73
169 170 3.942377 TACTCTGCGGTGCCGGGTA 62.942 63.158 12.82 0.00 40.19 3.69
171 172 4.077184 TTACTCTGCGGTGCCGGG 62.077 66.667 12.82 0.00 40.19 5.73
172 173 2.813908 GTTACTCTGCGGTGCCGG 60.814 66.667 12.82 0.00 40.19 6.13
173 174 2.813908 GGTTACTCTGCGGTGCCG 60.814 66.667 6.22 6.22 43.09 5.69
174 175 2.033194 GTGGTTACTCTGCGGTGCC 61.033 63.158 0.00 0.00 0.00 5.01
175 176 1.004918 AGTGGTTACTCTGCGGTGC 60.005 57.895 0.00 0.00 28.79 5.01
184 185 0.037232 GCGCCTCTTGAGTGGTTACT 60.037 55.000 0.00 0.00 40.66 2.24
185 186 0.320421 TGCGCCTCTTGAGTGGTTAC 60.320 55.000 4.18 0.00 0.00 2.50
186 187 0.320421 GTGCGCCTCTTGAGTGGTTA 60.320 55.000 4.18 0.00 0.00 2.85
187 188 1.598130 GTGCGCCTCTTGAGTGGTT 60.598 57.895 4.18 0.00 0.00 3.67
188 189 2.031163 GTGCGCCTCTTGAGTGGT 59.969 61.111 4.18 0.00 0.00 4.16
189 190 2.743928 GGTGCGCCTCTTGAGTGG 60.744 66.667 9.68 0.00 0.00 4.00
190 191 2.031012 TGGTGCGCCTCTTGAGTG 59.969 61.111 18.96 0.00 35.27 3.51
191 192 2.345244 CTGGTGCGCCTCTTGAGT 59.655 61.111 18.96 0.00 35.27 3.41
192 193 2.435586 CCTGGTGCGCCTCTTGAG 60.436 66.667 18.96 5.69 35.27 3.02
193 194 4.020617 CCCTGGTGCGCCTCTTGA 62.021 66.667 18.96 0.00 35.27 3.02
194 195 4.335647 ACCCTGGTGCGCCTCTTG 62.336 66.667 18.96 6.02 35.27 3.02
195 196 4.335647 CACCCTGGTGCGCCTCTT 62.336 66.667 18.96 0.00 39.39 2.85
210 211 4.814294 CTAGTGGTCGGGGCGCAC 62.814 72.222 10.83 4.83 0.00 5.34
211 212 3.942377 TACTAGTGGTCGGGGCGCA 62.942 63.158 10.83 0.00 0.00 6.09
212 213 3.142838 TACTAGTGGTCGGGGCGC 61.143 66.667 5.39 0.00 0.00 6.53
213 214 2.048023 TGTACTAGTGGTCGGGGCG 61.048 63.158 5.39 0.00 0.00 6.13
214 215 1.514553 GTGTACTAGTGGTCGGGGC 59.485 63.158 5.39 0.00 0.00 5.80
215 216 0.962356 ACGTGTACTAGTGGTCGGGG 60.962 60.000 5.39 0.00 0.00 5.73
216 217 0.883833 AACGTGTACTAGTGGTCGGG 59.116 55.000 5.39 0.00 0.00 5.14
217 218 1.536766 TGAACGTGTACTAGTGGTCGG 59.463 52.381 5.39 0.00 0.00 4.79
218 219 2.975410 TGAACGTGTACTAGTGGTCG 57.025 50.000 5.39 9.45 0.00 4.79
219 220 3.968649 TGTTGAACGTGTACTAGTGGTC 58.031 45.455 5.39 0.00 0.00 4.02
220 221 4.595762 ATGTTGAACGTGTACTAGTGGT 57.404 40.909 5.39 0.00 0.00 4.16
221 222 4.377022 GCAATGTTGAACGTGTACTAGTGG 60.377 45.833 5.39 0.00 0.00 4.00
222 223 4.663140 CGCAATGTTGAACGTGTACTAGTG 60.663 45.833 5.39 0.00 0.00 2.74
223 224 3.427528 CGCAATGTTGAACGTGTACTAGT 59.572 43.478 0.00 0.00 0.00 2.57
224 225 3.427528 ACGCAATGTTGAACGTGTACTAG 59.572 43.478 0.00 0.00 37.37 2.57
225 226 3.382855 ACGCAATGTTGAACGTGTACTA 58.617 40.909 0.00 0.00 37.37 1.82
226 227 2.206750 ACGCAATGTTGAACGTGTACT 58.793 42.857 0.00 0.00 37.37 2.73
227 228 2.656192 ACGCAATGTTGAACGTGTAC 57.344 45.000 0.00 0.00 37.37 2.90
244 245 6.141527 TGAAAAATGTTGAAATAGCGTTCACG 59.858 34.615 0.00 0.00 37.24 4.35
245 246 7.388290 TGAAAAATGTTGAAATAGCGTTCAC 57.612 32.000 0.70 0.00 37.24 3.18
445 622 9.737427 TGCTGAAAAAGTATTTAAAAATGTCGA 57.263 25.926 0.00 0.00 37.28 4.20
467 644 9.791820 TGTTGAATGAGTATATGAAAAATGCTG 57.208 29.630 0.00 0.00 0.00 4.41
784 1046 3.474570 GAGACAGGGGGATGCGCT 61.475 66.667 9.73 0.00 0.00 5.92
792 1054 0.172803 CGAGTAAACCGAGACAGGGG 59.827 60.000 0.00 0.00 35.02 4.79
794 1056 0.526662 AGCGAGTAAACCGAGACAGG 59.473 55.000 0.00 0.00 37.30 4.00
799 1061 3.636404 GCTTTAAGCGAGTAAACCGAG 57.364 47.619 0.00 0.00 0.00 4.63
920 1184 2.861006 GTGCGGGAGTTTTCGAGC 59.139 61.111 0.00 0.00 0.00 5.03
942 1206 1.357761 GGTTTGAGGATTTGGGGAGGA 59.642 52.381 0.00 0.00 0.00 3.71
969 1233 2.601299 GGTTGGGTATGGGGAGGC 59.399 66.667 0.00 0.00 0.00 4.70
1259 1750 2.401766 GCGCCCTTGGTGATCTGTG 61.402 63.158 0.00 0.00 34.74 3.66
1302 1793 2.640302 GCACTCTCTCGCCCAGTGA 61.640 63.158 2.48 0.00 40.07 3.41
1352 1843 3.925090 CTACACCGCCCCCGATCC 61.925 72.222 0.00 0.00 36.29 3.36
1353 1844 3.925090 CCTACACCGCCCCCGATC 61.925 72.222 0.00 0.00 36.29 3.69
1354 1845 4.468769 TCCTACACCGCCCCCGAT 62.469 66.667 0.00 0.00 36.29 4.18
1365 1874 2.792947 GCCGATTCCGCCTCCTACA 61.793 63.158 0.00 0.00 0.00 2.74
1549 2058 3.244875 TGCACAAGGTAACAGGATGATGT 60.245 43.478 0.00 0.00 39.69 3.06
1627 2136 1.000896 TTTTGGGCTAGCTCAGGGC 60.001 57.895 18.50 0.00 42.19 5.19
1710 2219 9.709495 ATACATGCACTTGATTTTGTAACAAAT 57.291 25.926 0.00 0.00 0.00 2.32
1727 2236 1.271934 TGCACCAAACCATACATGCAC 59.728 47.619 0.00 0.00 38.11 4.57
1770 2279 5.414789 TGGTTAAACTATCAGCTGCAGTA 57.585 39.130 16.64 1.48 0.00 2.74
1771 2280 4.286297 TGGTTAAACTATCAGCTGCAGT 57.714 40.909 16.64 11.83 0.00 4.40
1772 2281 5.824904 AATGGTTAAACTATCAGCTGCAG 57.175 39.130 10.11 10.11 0.00 4.41
1773 2282 6.588719 AAAATGGTTAAACTATCAGCTGCA 57.411 33.333 9.47 0.00 0.00 4.41
1774 2283 7.090173 TGAAAAATGGTTAAACTATCAGCTGC 58.910 34.615 9.47 0.00 0.00 5.25
1788 2297 5.069516 AGCACATCAGAACTGAAAAATGGTT 59.930 36.000 8.59 0.00 43.58 3.67
1795 2304 5.698089 CAGAGTAAGCACATCAGAACTGAAA 59.302 40.000 8.59 0.00 43.58 2.69
1796 2305 5.233225 CAGAGTAAGCACATCAGAACTGAA 58.767 41.667 8.59 0.00 43.58 3.02
1800 2309 3.929610 GACCAGAGTAAGCACATCAGAAC 59.070 47.826 0.00 0.00 0.00 3.01
1804 2313 1.204704 CGGACCAGAGTAAGCACATCA 59.795 52.381 0.00 0.00 0.00 3.07
1814 2323 0.468585 TGGTACACACGGACCAGAGT 60.469 55.000 0.00 0.00 40.87 3.24
1815 2324 2.347630 TGGTACACACGGACCAGAG 58.652 57.895 0.00 0.00 40.87 3.35
1816 2325 4.603052 TGGTACACACGGACCAGA 57.397 55.556 0.00 0.00 40.87 3.86
1841 2350 4.160252 GGCAGGAGAAATAAAGATTTGCCA 59.840 41.667 6.78 0.00 41.03 4.92
1844 2353 7.490402 GTCAATGGCAGGAGAAATAAAGATTTG 59.510 37.037 0.00 0.00 35.33 2.32
1854 2363 3.795688 AGAAGTCAATGGCAGGAGAAA 57.204 42.857 0.00 0.00 0.00 2.52
1864 2373 4.391216 CAGTGGTGAAGCTAGAAGTCAATG 59.609 45.833 0.00 0.00 0.00 2.82
1907 2416 5.557891 TTCTTAGTAAGTACGAGACAGGC 57.442 43.478 9.71 0.00 0.00 4.85
1962 2479 8.442632 CAGCATGGAGAAATTCTTGTAGAATA 57.557 34.615 0.00 0.00 43.67 1.75
1995 2512 6.920758 CACACTGCCAGAATACTACTATCTTC 59.079 42.308 0.00 0.00 0.00 2.87
2025 2542 7.066284 TCCAAATTCTATAAGAAGCAACTCAGC 59.934 37.037 0.00 0.00 37.69 4.26
2199 2721 3.428534 GCCACCGAAATTGAATGAAACAC 59.571 43.478 0.00 0.00 0.00 3.32
2499 3021 9.461312 AAATACTTGGCTCACATAATAGACAAA 57.539 29.630 0.00 0.00 40.16 2.83
2598 3147 0.627451 TTGCCTAGACCGGGTAGAGA 59.373 55.000 6.32 0.00 0.00 3.10
2634 3183 9.706691 CAGACAAACTTGAAGACTAAGGTAATA 57.293 33.333 0.00 0.00 0.00 0.98
2774 3324 6.037610 GTCAGATATCAGGTGAAAATGGTGTC 59.962 42.308 5.32 0.00 0.00 3.67
2823 3373 9.884465 GCACCAGTAACAAATATAGATCAAATC 57.116 33.333 0.00 0.00 0.00 2.17
2925 3475 8.027189 CCGGAATCGTTCAGATATCACTTATTA 58.973 37.037 5.32 0.00 38.98 0.98
2959 3511 0.615331 CTAAGGCAGAGACAAGGGCA 59.385 55.000 0.00 0.00 0.00 5.36
3028 3580 3.300388 CTGGATGCTAGAGTTAGGGACA 58.700 50.000 0.00 0.00 0.00 4.02
3246 3801 5.121611 CGTTTGTTGTGCCTGAGTGATAATA 59.878 40.000 0.00 0.00 0.00 0.98
3344 3908 3.749064 GACCTCGCTGCTGTCGGA 61.749 66.667 0.00 0.00 0.00 4.55
3408 3972 9.073475 TGTGTTTGCTAGACTTAATTTTACCAT 57.927 29.630 0.00 0.00 0.00 3.55
3457 4021 7.121759 CCACCTATTTTGATCTGACAAATGAGT 59.878 37.037 0.00 0.00 39.09 3.41
3463 4027 6.127647 GCAATCCACCTATTTTGATCTGACAA 60.128 38.462 0.00 0.00 0.00 3.18
3478 4042 1.452651 CAGGCGATGCAATCCACCT 60.453 57.895 0.00 0.00 44.71 4.00
3512 4076 5.804639 ACAAACATCATACTGTAGGCAGAA 58.195 37.500 1.30 0.00 45.28 3.02
3515 4079 5.159273 TGACAAACATCATACTGTAGGCA 57.841 39.130 0.00 0.00 0.00 4.75
3541 4105 1.860484 GAAAGCTGCAGTGGACTGGC 61.860 60.000 16.64 4.67 43.94 4.85
3606 4170 0.389757 GCTGGGTCTATTCCTCGTCC 59.610 60.000 0.00 0.00 0.00 4.79
3608 4172 1.404843 GAGCTGGGTCTATTCCTCGT 58.595 55.000 0.00 0.00 0.00 4.18
3708 4272 7.056635 GGGGATCTCTTGAAAATCAATACTGA 58.943 38.462 0.00 0.00 35.59 3.41
3709 4273 6.830324 TGGGGATCTCTTGAAAATCAATACTG 59.170 38.462 0.00 0.00 35.59 2.74
3710 4274 6.973642 TGGGGATCTCTTGAAAATCAATACT 58.026 36.000 0.00 0.00 35.59 2.12
3711 4275 7.040132 GGATGGGGATCTCTTGAAAATCAATAC 60.040 40.741 0.00 0.00 35.59 1.89
3712 4276 7.006509 GGATGGGGATCTCTTGAAAATCAATA 58.993 38.462 0.00 0.00 35.59 1.90
3713 4277 5.837438 GGATGGGGATCTCTTGAAAATCAAT 59.163 40.000 0.00 0.00 35.59 2.57
3755 4325 0.036732 GATCAGGGACAGTGCAACCA 59.963 55.000 0.00 0.00 37.80 3.67
3977 4547 3.066064 GGCAACAGACACACATTACACAA 59.934 43.478 0.00 0.00 0.00 3.33
4024 4594 4.909880 GGCAAACAAACATACTCGAGAAAC 59.090 41.667 21.68 0.00 0.00 2.78
4193 4763 7.887495 AGACAAGAAATAGCCTTCTTTCTTCAT 59.113 33.333 10.19 4.51 45.32 2.57
4582 5156 4.644103 AGCATGACATTAAATCCACAGC 57.356 40.909 0.00 0.00 0.00 4.40
4583 5157 9.241317 GATAAAAGCATGACATTAAATCCACAG 57.759 33.333 0.00 0.00 0.00 3.66
4584 5158 8.970020 AGATAAAAGCATGACATTAAATCCACA 58.030 29.630 0.00 0.00 0.00 4.17
4906 5490 4.552166 AAACGTGAATCTGTTCTGTTGG 57.448 40.909 0.00 0.00 35.40 3.77
5020 5604 3.042682 TGGTACAGAAACCACTTCCTCA 58.957 45.455 0.00 0.00 44.68 3.86
5090 5674 4.884668 TCCAGATACCACGAAAGAAAGT 57.115 40.909 0.00 0.00 0.00 2.66
5202 5786 1.171308 CATGACAGGCTGTGGAAAGG 58.829 55.000 27.45 5.69 0.00 3.11
5340 5990 7.598869 TCGGGTAATTTCGAATCATGAGAATAG 59.401 37.037 0.00 0.00 32.11 1.73
5580 6233 1.112113 TGCCCGAGTTATCAGGAGTC 58.888 55.000 0.00 0.00 0.00 3.36
5743 6396 1.656092 TTTGGTTGGTGGGGGTAGCA 61.656 55.000 0.00 0.00 0.00 3.49
5782 6435 1.538687 GCCCACATTTGAAGCAGCCT 61.539 55.000 0.00 0.00 0.00 4.58
5797 6450 1.455849 CCAGTGGTTCTCTTGCCCA 59.544 57.895 0.00 0.00 0.00 5.36
5837 6490 2.029290 TGTCAGAGTAAGGAACCGAAGC 60.029 50.000 0.00 0.00 0.00 3.86
5844 6497 2.289444 CCGCCTTTGTCAGAGTAAGGAA 60.289 50.000 12.76 0.00 40.71 3.36
6188 6841 6.703607 CAGGATAGACGCAAGATATCAAAAGT 59.296 38.462 5.32 0.00 39.57 2.66
6370 7028 5.240623 AGGAAACAGCAACATAAACATCGAA 59.759 36.000 0.00 0.00 0.00 3.71
6487 7151 0.976590 GAGTACAGGGTCCAGGGTCC 60.977 65.000 0.00 0.00 0.00 4.46
6528 7195 9.835389 GGTGGGACTGTATATATACTACTCTAG 57.165 40.741 20.80 12.41 34.41 2.43
6529 7196 9.571823 AGGTGGGACTGTATATATACTACTCTA 57.428 37.037 20.80 6.63 34.41 2.43
6530 7197 8.465798 AGGTGGGACTGTATATATACTACTCT 57.534 38.462 20.80 7.50 34.41 3.24
6535 7202 8.621073 TGTCATAGGTGGGACTGTATATATACT 58.379 37.037 20.80 4.64 35.11 2.12
6536 7203 8.818622 TGTCATAGGTGGGACTGTATATATAC 57.181 38.462 14.86 14.86 35.11 1.47
6537 7204 8.059461 CCTGTCATAGGTGGGACTGTATATATA 58.941 40.741 0.00 0.00 42.00 0.86
6538 7205 6.897966 CCTGTCATAGGTGGGACTGTATATAT 59.102 42.308 0.00 0.00 42.00 0.86
6539 7206 6.253758 CCTGTCATAGGTGGGACTGTATATA 58.746 44.000 0.00 0.00 42.00 0.86
6540 7207 5.087323 CCTGTCATAGGTGGGACTGTATAT 58.913 45.833 0.00 0.00 42.00 0.86
6588 7255 3.140814 GTCCCGCCCCTTTCATGC 61.141 66.667 0.00 0.00 0.00 4.06
6693 7361 0.893727 GGGGCGTTCAATTGGTCAGT 60.894 55.000 5.42 0.00 0.00 3.41
6700 7368 0.034477 CTAGGGTGGGGCGTTCAATT 60.034 55.000 0.00 0.00 0.00 2.32
6701 7369 1.607612 CTAGGGTGGGGCGTTCAAT 59.392 57.895 0.00 0.00 0.00 2.57
6702 7370 2.598787 CCTAGGGTGGGGCGTTCAA 61.599 63.158 0.00 0.00 0.00 2.69
6703 7371 3.006728 CCTAGGGTGGGGCGTTCA 61.007 66.667 0.00 0.00 0.00 3.18
6704 7372 3.793888 CCCTAGGGTGGGGCGTTC 61.794 72.222 20.88 0.00 43.45 3.95
6711 7379 1.534235 ATAGCGCTCCCTAGGGTGG 60.534 63.158 27.58 20.84 37.95 4.61
6712 7380 1.536943 GGATAGCGCTCCCTAGGGTG 61.537 65.000 27.58 25.32 37.95 4.61
6713 7381 1.228925 GGATAGCGCTCCCTAGGGT 60.229 63.158 27.58 10.49 37.95 4.34
6714 7382 2.344203 CGGATAGCGCTCCCTAGGG 61.344 68.421 23.22 23.22 38.66 3.53
6715 7383 2.995872 GCGGATAGCGCTCCCTAGG 61.996 68.421 16.34 0.06 35.41 3.02
6716 7384 2.569134 GCGGATAGCGCTCCCTAG 59.431 66.667 16.34 6.24 35.41 3.02
6776 7450 2.099831 CGTCGACCAGCTCGTACC 59.900 66.667 10.58 0.00 43.45 3.34
6825 7499 1.605710 GCCGCGATTACTACTCCTGTA 59.394 52.381 8.23 0.00 0.00 2.74
6983 7659 2.401351 GAAACCGACCTGTAGTGTCAC 58.599 52.381 0.00 0.00 32.91 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.