Multiple sequence alignment - TraesCS5A01G424500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G424500 chr5A 100.000 2374 0 0 1 2374 609873399 609871026 0.000000e+00 4385
1 TraesCS5A01G424500 chr5D 94.804 1655 44 15 589 2232 488864723 488863100 0.000000e+00 2542
2 TraesCS5A01G424500 chr5D 96.178 157 5 1 2206 2362 488863095 488862940 3.030000e-64 255
3 TraesCS5A01G424500 chr5B 92.934 1670 66 25 566 2210 602251556 602249914 0.000000e+00 2383
4 TraesCS5A01G424500 chr5B 88.136 236 26 2 1 235 602255046 602254812 1.800000e-71 279
5 TraesCS5A01G424500 chr5B 82.427 239 35 7 1 236 170050392 170050626 4.000000e-48 202
6 TraesCS5A01G424500 chr5B 93.893 131 8 0 2231 2361 602249777 602249647 5.180000e-47 198
7 TraesCS5A01G424500 chr5B 82.051 234 38 4 1 232 465820738 465820507 1.860000e-46 196
8 TraesCS5A01G424500 chr5B 84.091 176 28 0 323 498 602254742 602254567 1.130000e-38 171
9 TraesCS5A01G424500 chr2A 77.252 444 80 15 985 1422 378850137 378850565 8.480000e-60 241
10 TraesCS5A01G424500 chr2D 84.896 192 29 0 1231 1422 301817385 301817576 6.700000e-46 195
11 TraesCS5A01G424500 chr2B 83.173 208 35 0 1231 1438 356594690 356594897 8.660000e-45 191
12 TraesCS5A01G424500 chr6D 82.063 223 31 8 1 219 85900637 85900854 5.210000e-42 182
13 TraesCS5A01G424500 chr6D 81.982 222 33 7 1 219 150656970 150657187 5.210000e-42 182
14 TraesCS5A01G424500 chr6D 81.858 226 32 8 1 222 274531076 274530856 5.210000e-42 182
15 TraesCS5A01G424500 chr6D 82.063 223 31 8 1 219 453785340 453785557 5.210000e-42 182
16 TraesCS5A01G424500 chrUn 81.013 237 34 10 1 232 332288484 332288254 6.740000e-41 178
17 TraesCS5A01G424500 chr7D 81.013 237 34 10 1 232 11346130 11346360 6.740000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G424500 chr5A 609871026 609873399 2373 True 4385.00 4385 100.0000 1 2374 1 chr5A.!!$R1 2373
1 TraesCS5A01G424500 chr5D 488862940 488864723 1783 True 1398.50 2542 95.4910 589 2362 2 chr5D.!!$R1 1773
2 TraesCS5A01G424500 chr5B 602249647 602255046 5399 True 757.75 2383 89.7635 1 2361 4 chr5B.!!$R2 2360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 3649 0.916086 TGTGCGGACCCAATAGGATT 59.084 50.0 4.04 0.0 39.89 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 5032 1.741706 GCACCACATCCATCTCTGTTG 59.258 52.381 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 3.256631 AGATGTGATTGACAAGTTTGCCC 59.743 43.478 0.00 0.00 38.36 5.36
51 53 1.358759 GACAAGTTTGCCCACCGTG 59.641 57.895 0.00 0.00 0.00 4.94
53 55 1.826054 CAAGTTTGCCCACCGTGGA 60.826 57.895 19.81 0.00 40.96 4.02
57 59 1.202952 AGTTTGCCCACCGTGGAATTA 60.203 47.619 19.81 0.00 40.96 1.40
60 62 2.223803 TGCCCACCGTGGAATTATTT 57.776 45.000 19.81 0.00 40.96 1.40
61 63 1.821753 TGCCCACCGTGGAATTATTTG 59.178 47.619 19.81 0.44 40.96 2.32
68 70 5.105957 CCACCGTGGAATTATTTGTCATCAA 60.106 40.000 12.68 0.00 40.96 2.57
70 72 7.201776 CCACCGTGGAATTATTTGTCATCAATA 60.202 37.037 12.68 0.00 40.96 1.90
96 98 8.791327 ATGTACACATCAATGATGAACAACTA 57.209 30.769 27.86 9.35 42.09 2.24
105 107 8.620116 TCAATGATGAACAACTAAGACATGAA 57.380 30.769 0.00 0.00 30.99 2.57
115 117 7.968246 ACAACTAAGACATGAATCTTGAATCG 58.032 34.615 0.00 0.00 39.33 3.34
118 120 6.820656 ACTAAGACATGAATCTTGAATCGCTT 59.179 34.615 0.00 0.00 39.33 4.68
119 121 7.981789 ACTAAGACATGAATCTTGAATCGCTTA 59.018 33.333 0.00 0.00 39.33 3.09
120 122 7.615582 AAGACATGAATCTTGAATCGCTTAA 57.384 32.000 0.00 0.00 37.54 1.85
149 151 9.676861 TCAATTATGAGAGATGTTGATTTGAGT 57.323 29.630 0.00 0.00 0.00 3.41
151 153 9.458727 AATTATGAGAGATGTTGATTTGAGTGT 57.541 29.630 0.00 0.00 0.00 3.55
156 158 3.434641 AGATGTTGATTTGAGTGTGAGCG 59.565 43.478 0.00 0.00 0.00 5.03
157 159 1.264020 TGTTGATTTGAGTGTGAGCGC 59.736 47.619 0.00 0.00 0.00 5.92
258 274 6.076981 TCTTGCATTCCACTTTTCTTCTTC 57.923 37.500 0.00 0.00 0.00 2.87
307 323 8.649973 ACCTCAATAAGACTTTACGATTGATC 57.350 34.615 10.22 0.00 0.00 2.92
308 324 8.258007 ACCTCAATAAGACTTTACGATTGATCA 58.742 33.333 10.22 0.00 0.00 2.92
309 325 9.098355 CCTCAATAAGACTTTACGATTGATCAA 57.902 33.333 11.26 11.26 0.00 2.57
310 326 9.907576 CTCAATAAGACTTTACGATTGATCAAC 57.092 33.333 11.07 4.22 0.00 3.18
311 327 8.879759 TCAATAAGACTTTACGATTGATCAACC 58.120 33.333 11.07 0.00 0.00 3.77
312 328 5.779806 AAGACTTTACGATTGATCAACCG 57.220 39.130 20.74 20.74 0.00 4.44
313 329 3.617263 AGACTTTACGATTGATCAACCGC 59.383 43.478 22.19 4.66 0.00 5.68
314 330 3.331150 ACTTTACGATTGATCAACCGCA 58.669 40.909 22.19 6.57 0.00 5.69
315 331 3.749088 ACTTTACGATTGATCAACCGCAA 59.251 39.130 22.19 13.10 0.00 4.85
316 332 4.214545 ACTTTACGATTGATCAACCGCAAA 59.785 37.500 22.19 19.62 0.00 3.68
317 333 4.750952 TTACGATTGATCAACCGCAAAA 57.249 36.364 22.19 11.14 0.00 2.44
318 334 3.634568 ACGATTGATCAACCGCAAAAA 57.365 38.095 22.19 0.00 0.00 1.94
319 335 4.173036 ACGATTGATCAACCGCAAAAAT 57.827 36.364 22.19 0.00 0.00 1.82
320 336 5.303747 ACGATTGATCAACCGCAAAAATA 57.696 34.783 22.19 0.00 0.00 1.40
321 337 5.704888 ACGATTGATCAACCGCAAAAATAA 58.295 33.333 22.19 0.00 0.00 1.40
352 368 7.780008 TTACGGTTGATAATGTAATGTGAGG 57.220 36.000 0.00 0.00 0.00 3.86
393 409 7.701539 ACTATGTCCTATTGCATGTTTTCAA 57.298 32.000 0.00 0.00 0.00 2.69
400 416 8.125448 GTCCTATTGCATGTTTTCAATACTCTC 58.875 37.037 0.00 0.00 34.95 3.20
403 419 3.689161 TGCATGTTTTCAATACTCTCCCG 59.311 43.478 0.00 0.00 0.00 5.14
409 425 6.703319 TGTTTTCAATACTCTCCCGTTGATA 58.297 36.000 0.00 0.00 31.39 2.15
418 434 4.524714 ACTCTCCCGTTGATACTATGGATG 59.475 45.833 0.00 0.00 0.00 3.51
420 436 5.333581 TCTCCCGTTGATACTATGGATGAT 58.666 41.667 0.00 0.00 0.00 2.45
429 445 6.241645 TGATACTATGGATGATGAGACTCGT 58.758 40.000 0.00 0.00 0.00 4.18
432 448 4.646945 ACTATGGATGATGAGACTCGTGTT 59.353 41.667 0.75 0.00 0.00 3.32
433 449 3.510388 TGGATGATGAGACTCGTGTTC 57.490 47.619 0.75 0.00 0.00 3.18
437 453 3.203161 TGATGAGACTCGTGTTCTTCG 57.797 47.619 0.75 0.00 0.00 3.79
440 456 3.917329 TGAGACTCGTGTTCTTCGATT 57.083 42.857 0.00 0.00 36.73 3.34
446 462 5.522460 AGACTCGTGTTCTTCGATTCAAAAA 59.478 36.000 7.98 0.00 38.70 1.94
471 487 1.227999 AATTCTGTCACGGTGGCACG 61.228 55.000 12.07 8.43 40.31 5.34
474 490 2.586635 TGTCACGGTGGCACGAAC 60.587 61.111 12.07 7.38 37.61 3.95
498 514 2.124570 GAGGATGTGTGCGGCCAT 60.125 61.111 2.24 0.00 0.00 4.40
499 515 2.438975 AGGATGTGTGCGGCCATG 60.439 61.111 2.24 0.00 0.00 3.66
516 3448 4.166888 GGCGGGCAGAGCAGATCA 62.167 66.667 0.00 0.00 36.08 2.92
526 3458 4.451150 GCAGATCACGCGGTGGGA 62.451 66.667 12.47 0.00 33.87 4.37
546 3478 3.733960 GTGGCCGGCCGAAAGTTC 61.734 66.667 39.00 18.81 39.42 3.01
578 3537 2.793946 GCCTAGCGTGCACATTGG 59.206 61.111 18.64 15.36 0.00 3.16
587 3546 2.316867 TGCACATTGGCTCGACGTG 61.317 57.895 0.00 0.00 34.04 4.49
614 3573 1.209504 CCAGTTCACACCCGTATCCAT 59.790 52.381 0.00 0.00 0.00 3.41
687 3649 0.916086 TGTGCGGACCCAATAGGATT 59.084 50.000 4.04 0.00 39.89 3.01
718 3681 5.047164 ACAATATGGTTGTGTAGTCGGTGTA 60.047 40.000 0.00 0.00 0.00 2.90
1159 4131 4.380444 GCCCGATCTGCAAACAAGAATTTA 60.380 41.667 0.00 0.00 0.00 1.40
1160 4132 5.095490 CCCGATCTGCAAACAAGAATTTAC 58.905 41.667 0.00 0.00 0.00 2.01
1161 4133 5.335583 CCCGATCTGCAAACAAGAATTTACA 60.336 40.000 0.00 0.00 0.00 2.41
1162 4134 5.796935 CCGATCTGCAAACAAGAATTTACAG 59.203 40.000 0.00 0.00 35.21 2.74
1163 4135 5.796935 CGATCTGCAAACAAGAATTTACAGG 59.203 40.000 0.00 0.00 34.82 4.00
1168 4140 5.221224 TGCAAACAAGAATTTACAGGGTGAG 60.221 40.000 0.00 0.00 0.00 3.51
1169 4141 5.009610 GCAAACAAGAATTTACAGGGTGAGA 59.990 40.000 0.00 0.00 0.00 3.27
1200 4172 2.849880 AACATACGTACGCGGTATGT 57.150 45.000 24.69 24.69 41.84 2.29
1207 4179 1.062440 CGTACGCGGTATGTACAGTGA 59.938 52.381 12.47 0.00 41.76 3.41
1241 4213 0.892755 ATCGGTGGCTTACGAAGACA 59.107 50.000 0.00 0.00 46.47 3.41
1319 4291 2.682494 AGGTACACCGGGATGCGT 60.682 61.111 6.32 0.00 42.08 5.24
1468 4440 2.359478 GCGGGTGTCCACGGAAAT 60.359 61.111 0.00 0.00 0.00 2.17
1507 4479 0.035152 TTGCATCCGTGGCTCTCAAT 60.035 50.000 0.00 0.00 0.00 2.57
1706 4678 4.273480 CCGATCGAGATGGTAAGCAAAATT 59.727 41.667 18.66 0.00 0.00 1.82
1723 4695 4.707210 AAATTTGCAACGTCGATTTTGG 57.293 36.364 0.00 0.00 0.00 3.28
1754 4726 0.042731 ACGGAGGGAGGAATGAAGGA 59.957 55.000 0.00 0.00 0.00 3.36
1755 4727 1.204146 CGGAGGGAGGAATGAAGGAA 58.796 55.000 0.00 0.00 0.00 3.36
1980 4952 0.469705 ACCTGCAAATCAAGCACCCA 60.470 50.000 0.00 0.00 37.02 4.51
2059 5032 1.134995 TGCATCGATCTGTCTGACACC 60.135 52.381 6.36 0.00 0.00 4.16
2320 5421 5.810587 TGCGTACTCTCCTGAATTAATCAAC 59.189 40.000 0.00 0.00 37.67 3.18
2362 5463 4.021894 AGCTCGAGAAACACAAGACATACT 60.022 41.667 18.75 0.00 0.00 2.12
2363 5464 4.324936 GCTCGAGAAACACAAGACATACTC 59.675 45.833 18.75 0.00 0.00 2.59
2364 5465 5.704888 CTCGAGAAACACAAGACATACTCT 58.295 41.667 6.58 0.00 0.00 3.24
2365 5466 5.461526 TCGAGAAACACAAGACATACTCTG 58.538 41.667 0.00 0.00 0.00 3.35
2366 5467 4.623167 CGAGAAACACAAGACATACTCTGG 59.377 45.833 0.00 0.00 0.00 3.86
2367 5468 5.542779 GAGAAACACAAGACATACTCTGGT 58.457 41.667 0.00 0.00 32.67 4.00
2368 5469 5.930135 AGAAACACAAGACATACTCTGGTT 58.070 37.500 0.00 0.00 29.49 3.67
2369 5470 6.357367 AGAAACACAAGACATACTCTGGTTT 58.643 36.000 0.00 0.00 29.49 3.27
2370 5471 6.483640 AGAAACACAAGACATACTCTGGTTTC 59.516 38.462 0.00 0.00 29.49 2.78
2371 5472 4.307432 ACACAAGACATACTCTGGTTTCG 58.693 43.478 0.00 0.00 29.49 3.46
2372 5473 3.123621 CACAAGACATACTCTGGTTTCGC 59.876 47.826 0.00 0.00 29.49 4.70
2373 5474 3.244078 ACAAGACATACTCTGGTTTCGCA 60.244 43.478 0.00 0.00 26.84 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.124693 CCACGGTGGGCAAACTTGT 61.125 57.895 19.63 0.00 32.67 3.16
45 47 5.559427 TGATGACAAATAATTCCACGGTG 57.441 39.130 0.00 0.00 0.00 4.94
60 62 9.393512 TCATTGATGTGTACATTATTGATGACA 57.606 29.630 0.00 0.00 39.15 3.58
70 72 8.114331 AGTTGTTCATCATTGATGTGTACATT 57.886 30.769 22.64 14.16 40.55 2.71
75 77 7.445096 TGTCTTAGTTGTTCATCATTGATGTGT 59.555 33.333 22.64 7.95 40.55 3.72
85 87 8.939929 TCAAGATTCATGTCTTAGTTGTTCATC 58.060 33.333 0.00 0.00 36.33 2.92
94 96 6.841443 AGCGATTCAAGATTCATGTCTTAG 57.159 37.500 0.00 0.00 36.33 2.18
96 98 7.615582 TTAAGCGATTCAAGATTCATGTCTT 57.384 32.000 0.00 0.00 38.95 3.01
149 151 5.487153 TTTAACTTTAAAGTGCGCTCACA 57.513 34.783 21.22 0.00 45.49 3.58
151 153 6.975772 ACAATTTTAACTTTAAAGTGCGCTCA 59.024 30.769 21.22 4.89 39.66 4.26
232 234 7.951347 AGAAGAAAAGTGGAATGCAAGATAT 57.049 32.000 0.00 0.00 0.00 1.63
235 237 5.593909 TGAAGAAGAAAAGTGGAATGCAAGA 59.406 36.000 0.00 0.00 0.00 3.02
283 299 8.648557 TGATCAATCGTAAAGTCTTATTGAGG 57.351 34.615 12.02 0.00 39.26 3.86
286 302 7.846107 CGGTTGATCAATCGTAAAGTCTTATTG 59.154 37.037 28.79 0.03 39.85 1.90
287 303 7.465513 GCGGTTGATCAATCGTAAAGTCTTATT 60.466 37.037 34.46 0.00 45.89 1.40
288 304 6.018994 GCGGTTGATCAATCGTAAAGTCTTAT 60.019 38.462 34.46 0.00 45.89 1.73
290 306 4.092968 GCGGTTGATCAATCGTAAAGTCTT 59.907 41.667 34.46 0.00 45.89 3.01
291 307 3.617263 GCGGTTGATCAATCGTAAAGTCT 59.383 43.478 34.46 0.00 45.89 3.24
292 308 3.369756 TGCGGTTGATCAATCGTAAAGTC 59.630 43.478 34.46 20.82 45.89 3.01
293 309 3.331150 TGCGGTTGATCAATCGTAAAGT 58.669 40.909 34.46 0.00 45.89 2.66
294 310 4.335082 TTGCGGTTGATCAATCGTAAAG 57.665 40.909 33.04 12.91 44.17 1.85
296 312 4.750952 TTTTGCGGTTGATCAATCGTAA 57.249 36.364 32.01 32.01 45.12 3.18
297 313 4.750952 TTTTTGCGGTTGATCAATCGTA 57.249 36.364 34.46 30.12 45.89 3.43
298 314 3.634568 TTTTTGCGGTTGATCAATCGT 57.365 38.095 34.46 0.00 45.89 3.73
299 315 6.624710 TTTATTTTTGCGGTTGATCAATCG 57.375 33.333 31.83 31.83 46.81 3.34
326 342 8.335356 CCTCACATTACATTATCAACCGTAAAG 58.665 37.037 0.00 0.00 0.00 1.85
331 347 6.128822 CGATCCTCACATTACATTATCAACCG 60.129 42.308 0.00 0.00 0.00 4.44
333 349 7.095607 GGACGATCCTCACATTACATTATCAAC 60.096 40.741 0.00 0.00 32.53 3.18
393 409 5.888901 TCCATAGTATCAACGGGAGAGTAT 58.111 41.667 0.00 0.00 34.45 2.12
400 416 5.185828 TCTCATCATCCATAGTATCAACGGG 59.814 44.000 0.00 0.00 0.00 5.28
403 419 7.026562 CGAGTCTCATCATCCATAGTATCAAC 58.973 42.308 0.00 0.00 0.00 3.18
409 425 4.211125 ACACGAGTCTCATCATCCATAGT 58.789 43.478 0.00 0.00 0.00 2.12
418 434 3.473093 TCGAAGAACACGAGTCTCATC 57.527 47.619 0.00 0.00 34.85 2.92
420 436 3.822996 GAATCGAAGAACACGAGTCTCA 58.177 45.455 0.00 0.00 46.32 3.27
450 466 0.605319 TGCCACCGTGACAGAATTCC 60.605 55.000 0.65 0.00 0.00 3.01
451 467 0.517316 GTGCCACCGTGACAGAATTC 59.483 55.000 0.00 0.00 0.00 2.17
471 487 2.158959 CACATCCTCGTCGCCGTTC 61.159 63.158 0.00 0.00 35.01 3.95
474 490 2.880879 CACACATCCTCGTCGCCG 60.881 66.667 0.00 0.00 0.00 6.46
477 493 2.880879 CCGCACACATCCTCGTCG 60.881 66.667 0.00 0.00 0.00 5.12
478 494 3.188786 GCCGCACACATCCTCGTC 61.189 66.667 0.00 0.00 0.00 4.20
498 514 4.166888 GATCTGCTCTGCCCGCCA 62.167 66.667 0.00 0.00 0.00 5.69
499 515 4.166888 TGATCTGCTCTGCCCGCC 62.167 66.667 0.00 0.00 0.00 6.13
510 3442 2.100631 GTTCCCACCGCGTGATCTG 61.101 63.158 4.92 0.00 35.23 2.90
512 3444 3.186047 CGTTCCCACCGCGTGATC 61.186 66.667 4.92 0.00 35.23 2.92
561 3493 2.793946 CCAATGTGCACGCTAGGC 59.206 61.111 13.13 0.00 0.00 3.93
563 3495 1.717937 GAGCCAATGTGCACGCTAG 59.282 57.895 15.62 4.85 0.00 3.42
564 3496 2.100031 CGAGCCAATGTGCACGCTA 61.100 57.895 15.62 0.00 38.41 4.26
568 3527 2.317609 ACGTCGAGCCAATGTGCAC 61.318 57.895 10.75 10.75 0.00 4.57
578 3537 3.119096 GGAAAGGGCACGTCGAGC 61.119 66.667 6.06 6.06 0.00 5.03
587 3546 1.179174 GGGTGTGAACTGGAAAGGGC 61.179 60.000 0.00 0.00 0.00 5.19
687 3649 7.279090 CGACTACACAACCATATTGTATTCCAA 59.721 37.037 0.00 0.00 37.49 3.53
702 3665 6.369615 ACCATATTTTACACCGACTACACAAC 59.630 38.462 0.00 0.00 0.00 3.32
703 3666 6.465948 ACCATATTTTACACCGACTACACAA 58.534 36.000 0.00 0.00 0.00 3.33
704 3667 6.040209 ACCATATTTTACACCGACTACACA 57.960 37.500 0.00 0.00 0.00 3.72
718 3681 4.201910 CGTCTCGCCATTTGACCATATTTT 60.202 41.667 0.00 0.00 0.00 1.82
749 3712 7.535489 AGTAGATAAATTTTGCGTACTGTCC 57.465 36.000 0.00 0.00 0.00 4.02
943 3915 2.559440 GAGGATGTAAGCAAGAGCCAG 58.441 52.381 0.00 0.00 43.56 4.85
955 3927 2.445845 CCCCCTGCCGAGGATGTA 60.446 66.667 0.00 0.00 42.93 2.29
1159 4131 1.701847 AGCACTGAATTCTCACCCTGT 59.298 47.619 7.05 0.00 0.00 4.00
1160 4132 2.486472 AGCACTGAATTCTCACCCTG 57.514 50.000 7.05 0.00 0.00 4.45
1161 4133 4.202461 TGTTTAGCACTGAATTCTCACCCT 60.202 41.667 7.05 0.00 0.00 4.34
1162 4134 4.072131 TGTTTAGCACTGAATTCTCACCC 58.928 43.478 7.05 0.00 0.00 4.61
1163 4135 5.886960 ATGTTTAGCACTGAATTCTCACC 57.113 39.130 7.05 0.00 0.00 4.02
1168 4140 6.400422 CGTACGTATGTTTAGCACTGAATTC 58.600 40.000 7.22 0.00 0.00 2.17
1169 4141 5.220340 GCGTACGTATGTTTAGCACTGAATT 60.220 40.000 17.90 0.00 0.00 2.17
1200 4172 1.968493 GACCCTTCACCAGTCACTGTA 59.032 52.381 3.56 0.00 0.00 2.74
1207 4179 1.605058 CCGATCGACCCTTCACCAGT 61.605 60.000 18.66 0.00 0.00 4.00
1468 4440 1.968704 AGATAGGCTGACATCGTCGA 58.031 50.000 0.00 0.00 34.95 4.20
1507 4479 5.645497 GCCATCTCTTCTTCTTAGCTTTGAA 59.355 40.000 0.00 0.00 0.00 2.69
1706 4678 3.850374 GCTTACCAAAATCGACGTTGCAA 60.850 43.478 0.00 0.00 0.00 4.08
1754 4726 2.147387 AGGTCAGTTCACCCGCCTT 61.147 57.895 0.00 0.00 37.09 4.35
1755 4727 2.526873 AGGTCAGTTCACCCGCCT 60.527 61.111 0.00 0.00 37.09 5.52
1980 4952 3.445518 ATGCGCCATGGACGACGAT 62.446 57.895 26.00 14.15 0.00 3.73
2004 4976 5.188434 TCTGAAGCTAATCATCTTGGTTGG 58.812 41.667 0.00 0.00 0.00 3.77
2059 5032 1.741706 GCACCACATCCATCTCTGTTG 59.258 52.381 0.00 0.00 0.00 3.33
2228 5213 6.152661 TCCTGTTAATCCAACCAATTCATGTC 59.847 38.462 0.00 0.00 36.20 3.06
2320 5421 2.872038 GCTAACTGAGACCCCTTGTGTG 60.872 54.545 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.