Multiple sequence alignment - TraesCS5A01G424300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G424300 chr5A 100.000 2919 0 0 1512 4430 609863391 609866309 0.000000e+00 5391.0
1 TraesCS5A01G424300 chr5A 100.000 1131 0 0 1 1131 609861880 609863010 0.000000e+00 2089.0
2 TraesCS5A01G424300 chr5A 85.496 131 11 4 366 494 332327455 332327579 3.600000e-26 130.0
3 TraesCS5A01G424300 chr5D 93.443 2379 97 27 2017 4379 488854162 488856497 0.000000e+00 3474.0
4 TraesCS5A01G424300 chr5D 94.118 374 7 4 695 1058 488853273 488853641 5.010000e-154 555.0
5 TraesCS5A01G424300 chr5D 89.160 369 16 5 1512 1867 488853739 488854096 5.260000e-119 438.0
6 TraesCS5A01G424300 chr5D 89.437 284 20 7 366 648 488852887 488853161 2.540000e-92 350.0
7 TraesCS5A01G424300 chr5B 92.797 1305 51 14 1512 2793 602242271 602243555 0.000000e+00 1849.0
8 TraesCS5A01G424300 chr5B 91.429 1120 49 10 3176 4291 602244468 602245544 0.000000e+00 1493.0
9 TraesCS5A01G424300 chr5B 91.304 322 19 8 2869 3186 602243745 602244061 8.800000e-117 431.0
10 TraesCS5A01G424300 chr5B 92.578 256 15 3 695 949 602241464 602241716 9.060000e-97 364.0
11 TraesCS5A01G424300 chr5B 86.774 310 32 8 366 671 602241097 602241401 1.970000e-88 337.0
12 TraesCS5A01G424300 chr5B 96.203 79 3 0 2778 2856 602243572 602243650 3.600000e-26 130.0
13 TraesCS5A01G424300 chr5B 78.771 179 27 4 366 544 282395567 282395734 4.680000e-20 110.0
14 TraesCS5A01G424300 chr5B 100.000 34 0 0 1098 1131 602242189 602242222 3.700000e-06 63.9
15 TraesCS5A01G424300 chr7A 84.967 153 18 4 428 576 714615185 714615034 2.760000e-32 150.0
16 TraesCS5A01G424300 chr2A 84.091 88 11 3 454 541 15946724 15946640 1.020000e-11 82.4
17 TraesCS5A01G424300 chr2D 84.416 77 8 2 454 530 13754713 13754641 6.150000e-09 73.1
18 TraesCS5A01G424300 chr1A 87.500 56 6 1 289 343 390690958 390690903 3.700000e-06 63.9
19 TraesCS5A01G424300 chr6A 83.077 65 7 3 6 70 564860450 564860390 6.190000e-04 56.5
20 TraesCS5A01G424300 chr7D 100.000 28 0 0 43 70 133317496 133317523 8.000000e-03 52.8
21 TraesCS5A01G424300 chr3D 100.000 28 0 0 456 483 500653553 500653526 8.000000e-03 52.8
22 TraesCS5A01G424300 chr3B 100.000 28 0 0 456 483 661855849 661855822 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G424300 chr5A 609861880 609866309 4429 False 3740.000000 5391 100.000000 1 4430 2 chr5A.!!$F2 4429
1 TraesCS5A01G424300 chr5D 488852887 488856497 3610 False 1204.250000 3474 91.539500 366 4379 4 chr5D.!!$F1 4013
2 TraesCS5A01G424300 chr5B 602241097 602245544 4447 False 666.842857 1849 93.012143 366 4291 7 chr5B.!!$F2 3925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.032678 ATAGATGTGCTTCTCGCGGG 59.967 55.0 6.13 1.01 43.27 6.13 F
728 796 0.096454 GCCTCGCATGTAAAACGTCC 59.904 55.0 0.00 0.00 0.00 4.79 F
1895 2313 0.037303 ATTGCTGTCCAGTGTCCAGG 59.963 55.0 8.01 0.00 0.00 4.45 F
2560 2980 0.400213 ATACGGTGGTATGGGCATGG 59.600 55.0 0.00 0.00 37.94 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 1943 1.136961 TGAACATGGCCACCCACCTA 61.137 55.0 8.16 0.0 45.77 3.08 R
2137 2557 0.180406 AGGCCTCAACAACGTCACTT 59.820 50.0 0.00 0.0 0.00 3.16 R
2856 3308 0.179023 AAACCGGTTCCGCCAACTAA 60.179 50.0 22.53 0.0 36.97 2.24 R
4330 5302 0.102300 GCGTTTGGTTTGGTTGCTCT 59.898 50.0 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.817960 GTGCTTCTCGCGAAAACAA 57.182 47.368 11.33 0.00 43.27 2.83
21 22 2.099633 GTGCTTCTCGCGAAAACAAA 57.900 45.000 11.33 0.00 43.27 2.83
22 23 2.650608 GTGCTTCTCGCGAAAACAAAT 58.349 42.857 11.33 0.00 43.27 2.32
23 24 3.042887 GTGCTTCTCGCGAAAACAAATT 58.957 40.909 11.33 0.00 43.27 1.82
24 25 3.485743 GTGCTTCTCGCGAAAACAAATTT 59.514 39.130 11.33 0.00 43.27 1.82
25 26 3.485378 TGCTTCTCGCGAAAACAAATTTG 59.515 39.130 16.67 16.67 43.27 2.32
26 27 3.485743 GCTTCTCGCGAAAACAAATTTGT 59.514 39.130 18.13 18.13 44.72 2.83
27 28 4.673311 GCTTCTCGCGAAAACAAATTTGTA 59.327 37.500 23.53 5.93 41.31 2.41
28 29 5.342259 GCTTCTCGCGAAAACAAATTTGTAT 59.658 36.000 23.53 15.56 41.31 2.29
29 30 6.451183 GCTTCTCGCGAAAACAAATTTGTATC 60.451 38.462 23.53 21.20 41.31 2.24
30 31 6.236017 TCTCGCGAAAACAAATTTGTATCT 57.764 33.333 23.53 11.25 41.31 1.98
31 32 6.304126 TCTCGCGAAAACAAATTTGTATCTC 58.696 36.000 23.53 17.30 41.31 2.75
32 33 5.387279 TCGCGAAAACAAATTTGTATCTCC 58.613 37.500 23.53 15.45 41.31 3.71
33 34 5.049336 TCGCGAAAACAAATTTGTATCTCCA 60.049 36.000 23.53 7.14 41.31 3.86
34 35 5.059221 CGCGAAAACAAATTTGTATCTCCAC 59.941 40.000 23.53 12.27 41.31 4.02
35 36 5.059221 GCGAAAACAAATTTGTATCTCCACG 59.941 40.000 23.53 19.76 41.31 4.94
36 37 6.367421 CGAAAACAAATTTGTATCTCCACGA 58.633 36.000 23.53 0.00 41.31 4.35
37 38 6.519761 CGAAAACAAATTTGTATCTCCACGAG 59.480 38.462 23.53 7.56 41.31 4.18
38 39 7.504924 AAAACAAATTTGTATCTCCACGAGA 57.495 32.000 23.53 0.00 40.88 4.04
39 40 7.504924 AAACAAATTTGTATCTCCACGAGAA 57.495 32.000 23.53 0.00 40.37 2.87
40 41 6.727824 ACAAATTTGTATCTCCACGAGAAG 57.272 37.500 22.10 0.00 40.16 2.85
41 42 5.122396 ACAAATTTGTATCTCCACGAGAAGC 59.878 40.000 22.10 0.00 40.16 3.86
42 43 3.953712 TTTGTATCTCCACGAGAAGCA 57.046 42.857 0.00 0.00 42.27 3.91
43 44 3.953712 TTGTATCTCCACGAGAAGCAA 57.046 42.857 0.00 2.12 42.27 3.91
44 45 3.953712 TGTATCTCCACGAGAAGCAAA 57.046 42.857 0.00 0.00 42.27 3.68
45 46 3.585862 TGTATCTCCACGAGAAGCAAAC 58.414 45.455 0.00 0.00 42.27 2.93
46 47 2.839486 ATCTCCACGAGAAGCAAACA 57.161 45.000 0.00 0.00 42.27 2.83
47 48 2.613026 TCTCCACGAGAAGCAAACAA 57.387 45.000 0.00 0.00 35.59 2.83
48 49 2.912771 TCTCCACGAGAAGCAAACAAA 58.087 42.857 0.00 0.00 35.59 2.83
49 50 3.476552 TCTCCACGAGAAGCAAACAAAT 58.523 40.909 0.00 0.00 35.59 2.32
50 51 4.637276 TCTCCACGAGAAGCAAACAAATA 58.363 39.130 0.00 0.00 35.59 1.40
51 52 5.245531 TCTCCACGAGAAGCAAACAAATAT 58.754 37.500 0.00 0.00 35.59 1.28
52 53 5.122239 TCTCCACGAGAAGCAAACAAATATG 59.878 40.000 0.00 0.00 35.59 1.78
53 54 4.759693 TCCACGAGAAGCAAACAAATATGT 59.240 37.500 0.00 0.00 43.14 2.29
54 55 4.853196 CCACGAGAAGCAAACAAATATGTG 59.147 41.667 0.00 0.00 40.46 3.21
55 56 4.321745 CACGAGAAGCAAACAAATATGTGC 59.678 41.667 0.00 0.00 40.46 4.57
56 57 4.216257 ACGAGAAGCAAACAAATATGTGCT 59.784 37.500 0.00 0.00 39.67 4.40
57 58 5.156355 CGAGAAGCAAACAAATATGTGCTT 58.844 37.500 9.34 9.34 45.92 3.91
61 62 4.726416 AGCAAACAAATATGTGCTTCTCG 58.274 39.130 0.00 0.00 40.46 4.04
62 63 4.216257 AGCAAACAAATATGTGCTTCTCGT 59.784 37.500 0.00 0.00 40.46 4.18
63 64 4.321745 GCAAACAAATATGTGCTTCTCGTG 59.678 41.667 0.00 0.00 40.46 4.35
64 65 5.688823 CAAACAAATATGTGCTTCTCGTGA 58.311 37.500 0.00 0.00 40.46 4.35
65 66 5.940192 AACAAATATGTGCTTCTCGTGAA 57.060 34.783 0.00 0.00 40.46 3.18
66 67 5.940192 ACAAATATGTGCTTCTCGTGAAA 57.060 34.783 1.12 0.00 38.69 2.69
67 68 5.931532 ACAAATATGTGCTTCTCGTGAAAG 58.068 37.500 1.12 0.00 38.69 2.62
68 69 4.606457 AATATGTGCTTCTCGTGAAAGC 57.394 40.909 10.73 10.73 0.00 3.51
69 70 1.882912 ATGTGCTTCTCGTGAAAGCA 58.117 45.000 14.66 14.66 35.56 3.91
70 71 1.662517 TGTGCTTCTCGTGAAAGCAA 58.337 45.000 18.43 9.88 37.73 3.91
71 72 2.013400 TGTGCTTCTCGTGAAAGCAAA 58.987 42.857 18.43 13.16 37.73 3.68
72 73 2.421775 TGTGCTTCTCGTGAAAGCAAAA 59.578 40.909 18.43 10.59 37.73 2.44
73 74 3.119673 TGTGCTTCTCGTGAAAGCAAAAA 60.120 39.130 18.43 8.79 37.73 1.94
104 105 6.748333 TTTTTCTCAAGAGGCATAGATGTG 57.252 37.500 0.00 0.00 0.00 3.21
105 106 3.465742 TCTCAAGAGGCATAGATGTGC 57.534 47.619 0.00 0.00 44.31 4.57
106 107 3.036819 TCTCAAGAGGCATAGATGTGCT 58.963 45.455 1.52 0.00 44.45 4.40
107 108 3.453717 TCTCAAGAGGCATAGATGTGCTT 59.546 43.478 1.52 0.00 44.45 3.91
111 112 2.402305 GAGGCATAGATGTGCTTCTCG 58.598 52.381 6.46 0.00 44.85 4.04
112 113 0.864455 GGCATAGATGTGCTTCTCGC 59.136 55.000 1.52 0.00 44.45 5.03
113 114 0.506080 GCATAGATGTGCTTCTCGCG 59.494 55.000 0.00 0.00 43.27 5.87
114 115 1.135046 CATAGATGTGCTTCTCGCGG 58.865 55.000 6.13 0.00 43.27 6.46
115 116 0.032678 ATAGATGTGCTTCTCGCGGG 59.967 55.000 6.13 1.01 43.27 6.13
116 117 1.035385 TAGATGTGCTTCTCGCGGGA 61.035 55.000 3.45 3.45 43.27 5.14
117 118 1.880340 GATGTGCTTCTCGCGGGAG 60.880 63.158 22.60 22.60 43.27 4.30
118 119 2.564553 GATGTGCTTCTCGCGGGAGT 62.565 60.000 26.49 7.75 43.27 3.85
119 120 1.320344 ATGTGCTTCTCGCGGGAGTA 61.320 55.000 26.49 17.74 43.27 2.59
120 121 1.214589 GTGCTTCTCGCGGGAGTAA 59.785 57.895 26.49 18.13 43.27 2.24
121 122 0.389426 GTGCTTCTCGCGGGAGTAAA 60.389 55.000 26.49 14.92 43.27 2.01
122 123 0.535335 TGCTTCTCGCGGGAGTAAAT 59.465 50.000 26.49 0.00 43.27 1.40
123 124 1.209998 GCTTCTCGCGGGAGTAAATC 58.790 55.000 26.49 8.84 41.26 2.17
124 125 1.202428 GCTTCTCGCGGGAGTAAATCT 60.202 52.381 26.49 0.00 41.26 2.40
125 126 2.464865 CTTCTCGCGGGAGTAAATCTG 58.535 52.381 26.49 3.93 41.26 2.90
126 127 1.471119 TCTCGCGGGAGTAAATCTGT 58.529 50.000 26.49 0.00 41.26 3.41
127 128 1.134367 TCTCGCGGGAGTAAATCTGTG 59.866 52.381 26.49 0.72 41.26 3.66
128 129 0.892755 TCGCGGGAGTAAATCTGTGT 59.107 50.000 6.13 0.00 0.00 3.72
129 130 1.135199 TCGCGGGAGTAAATCTGTGTC 60.135 52.381 6.13 0.00 0.00 3.67
130 131 1.135083 CGCGGGAGTAAATCTGTGTCT 60.135 52.381 0.00 0.00 0.00 3.41
131 132 2.541556 GCGGGAGTAAATCTGTGTCTC 58.458 52.381 0.00 0.00 0.00 3.36
132 133 2.738964 GCGGGAGTAAATCTGTGTCTCC 60.739 54.545 0.00 0.00 42.53 3.71
133 134 2.496070 CGGGAGTAAATCTGTGTCTCCA 59.504 50.000 10.88 0.00 44.33 3.86
134 135 3.133003 CGGGAGTAAATCTGTGTCTCCAT 59.867 47.826 10.88 0.00 44.33 3.41
135 136 4.698575 GGGAGTAAATCTGTGTCTCCATC 58.301 47.826 10.88 0.00 44.33 3.51
136 137 4.162320 GGGAGTAAATCTGTGTCTCCATCA 59.838 45.833 10.88 0.00 44.33 3.07
137 138 5.338381 GGGAGTAAATCTGTGTCTCCATCAA 60.338 44.000 10.88 0.00 44.33 2.57
138 139 6.173339 GGAGTAAATCTGTGTCTCCATCAAA 58.827 40.000 0.00 0.00 42.72 2.69
139 140 6.655003 GGAGTAAATCTGTGTCTCCATCAAAA 59.345 38.462 0.00 0.00 42.72 2.44
140 141 7.148340 GGAGTAAATCTGTGTCTCCATCAAAAG 60.148 40.741 0.00 0.00 42.72 2.27
141 142 5.382618 AAATCTGTGTCTCCATCAAAAGC 57.617 39.130 0.00 0.00 0.00 3.51
142 143 3.490439 TCTGTGTCTCCATCAAAAGCA 57.510 42.857 0.00 0.00 0.00 3.91
143 144 3.819368 TCTGTGTCTCCATCAAAAGCAA 58.181 40.909 0.00 0.00 0.00 3.91
144 145 4.206375 TCTGTGTCTCCATCAAAAGCAAA 58.794 39.130 0.00 0.00 0.00 3.68
145 146 4.828939 TCTGTGTCTCCATCAAAAGCAAAT 59.171 37.500 0.00 0.00 0.00 2.32
146 147 6.003326 TCTGTGTCTCCATCAAAAGCAAATA 58.997 36.000 0.00 0.00 0.00 1.40
147 148 6.660521 TCTGTGTCTCCATCAAAAGCAAATAT 59.339 34.615 0.00 0.00 0.00 1.28
148 149 6.623486 TGTGTCTCCATCAAAAGCAAATATG 58.377 36.000 0.00 0.00 0.00 1.78
149 150 6.209192 TGTGTCTCCATCAAAAGCAAATATGT 59.791 34.615 0.00 0.00 0.00 2.29
150 151 6.749118 GTGTCTCCATCAAAAGCAAATATGTC 59.251 38.462 0.00 0.00 0.00 3.06
151 152 6.433716 TGTCTCCATCAAAAGCAAATATGTCA 59.566 34.615 0.00 0.00 0.00 3.58
152 153 7.123098 TGTCTCCATCAAAAGCAAATATGTCAT 59.877 33.333 0.00 0.00 0.00 3.06
153 154 7.977853 GTCTCCATCAAAAGCAAATATGTCATT 59.022 33.333 0.00 0.00 0.00 2.57
154 155 9.187996 TCTCCATCAAAAGCAAATATGTCATTA 57.812 29.630 0.00 0.00 0.00 1.90
155 156 9.976511 CTCCATCAAAAGCAAATATGTCATTAT 57.023 29.630 0.00 0.00 0.00 1.28
160 161 8.871862 TCAAAAGCAAATATGTCATTATTGTGC 58.128 29.630 10.31 5.22 32.20 4.57
161 162 8.657729 CAAAAGCAAATATGTCATTATTGTGCA 58.342 29.630 10.31 0.00 33.22 4.57
162 163 8.774890 AAAGCAAATATGTCATTATTGTGCAA 57.225 26.923 0.00 0.00 33.22 4.08
163 164 7.997107 AGCAAATATGTCATTATTGTGCAAG 57.003 32.000 0.00 0.00 33.22 4.01
164 165 7.774134 AGCAAATATGTCATTATTGTGCAAGA 58.226 30.769 0.00 0.00 33.22 3.02
165 166 8.252417 AGCAAATATGTCATTATTGTGCAAGAA 58.748 29.630 0.00 0.00 33.22 2.52
166 167 8.871862 GCAAATATGTCATTATTGTGCAAGAAA 58.128 29.630 0.00 0.00 32.27 2.52
201 202 7.817418 TTTTACTATTTTTGAGAGGCACAGT 57.183 32.000 0.00 0.00 0.00 3.55
202 203 7.435068 TTTACTATTTTTGAGAGGCACAGTC 57.565 36.000 0.00 0.00 0.00 3.51
203 204 3.997021 ACTATTTTTGAGAGGCACAGTCG 59.003 43.478 0.00 0.00 0.00 4.18
204 205 2.325583 TTTTTGAGAGGCACAGTCGT 57.674 45.000 0.00 0.00 0.00 4.34
205 206 1.581934 TTTTGAGAGGCACAGTCGTG 58.418 50.000 0.00 0.00 46.56 4.35
206 207 0.249868 TTTGAGAGGCACAGTCGTGG 60.250 55.000 0.00 0.00 43.81 4.94
207 208 1.399744 TTGAGAGGCACAGTCGTGGT 61.400 55.000 0.00 0.00 43.81 4.16
208 209 1.367840 GAGAGGCACAGTCGTGGTT 59.632 57.895 0.00 0.00 43.81 3.67
209 210 0.667792 GAGAGGCACAGTCGTGGTTC 60.668 60.000 0.00 0.00 43.81 3.62
210 211 1.115930 AGAGGCACAGTCGTGGTTCT 61.116 55.000 0.00 0.00 43.81 3.01
211 212 0.667792 GAGGCACAGTCGTGGTTCTC 60.668 60.000 0.00 0.00 43.81 2.87
212 213 1.069090 GGCACAGTCGTGGTTCTCA 59.931 57.895 0.00 0.00 43.81 3.27
213 214 1.222115 GGCACAGTCGTGGTTCTCAC 61.222 60.000 0.00 0.00 43.81 3.51
228 229 5.315118 GTTCTCACGGAAGCAAATTTTTG 57.685 39.130 0.00 0.00 41.03 2.44
243 244 7.215696 CAAATTTTTGCTTCTCGTGTAAACA 57.784 32.000 0.00 0.00 0.00 2.83
244 245 7.670916 CAAATTTTTGCTTCTCGTGTAAACAA 58.329 30.769 0.00 0.00 0.00 2.83
245 246 7.820044 AATTTTTGCTTCTCGTGTAAACAAA 57.180 28.000 0.00 0.00 0.00 2.83
246 247 7.820044 ATTTTTGCTTCTCGTGTAAACAAAA 57.180 28.000 0.00 0.00 34.69 2.44
247 248 7.639162 TTTTTGCTTCTCGTGTAAACAAAAA 57.361 28.000 0.00 0.00 40.92 1.94
270 271 8.924511 AAAATACATGTCTTCTCCTTTTCTGA 57.075 30.769 0.00 0.00 0.00 3.27
271 272 8.558973 AAATACATGTCTTCTCCTTTTCTGAG 57.441 34.615 0.00 0.00 0.00 3.35
272 273 5.815233 ACATGTCTTCTCCTTTTCTGAGA 57.185 39.130 0.00 0.00 37.09 3.27
273 274 5.792741 ACATGTCTTCTCCTTTTCTGAGAG 58.207 41.667 0.00 0.00 39.84 3.20
274 275 4.881019 TGTCTTCTCCTTTTCTGAGAGG 57.119 45.455 3.50 3.50 39.84 3.69
275 276 3.007398 TGTCTTCTCCTTTTCTGAGAGGC 59.993 47.826 4.73 0.00 39.84 4.70
276 277 3.007398 GTCTTCTCCTTTTCTGAGAGGCA 59.993 47.826 4.73 0.00 39.84 4.75
277 278 3.007398 TCTTCTCCTTTTCTGAGAGGCAC 59.993 47.826 4.73 0.00 39.84 5.01
278 279 2.329267 TCTCCTTTTCTGAGAGGCACA 58.671 47.619 4.73 0.00 34.03 4.57
279 280 2.705658 TCTCCTTTTCTGAGAGGCACAA 59.294 45.455 4.73 0.00 34.03 3.33
280 281 2.810852 CTCCTTTTCTGAGAGGCACAAC 59.189 50.000 4.73 0.00 32.93 3.32
281 282 2.439507 TCCTTTTCTGAGAGGCACAACT 59.560 45.455 4.73 0.00 32.93 3.16
282 283 3.646162 TCCTTTTCTGAGAGGCACAACTA 59.354 43.478 4.73 0.00 32.93 2.24
283 284 4.287067 TCCTTTTCTGAGAGGCACAACTAT 59.713 41.667 4.73 0.00 32.93 2.12
284 285 4.394300 CCTTTTCTGAGAGGCACAACTATG 59.606 45.833 0.00 0.00 0.00 2.23
285 286 4.623932 TTTCTGAGAGGCACAACTATGT 57.376 40.909 0.00 0.00 41.61 2.29
286 287 4.623932 TTCTGAGAGGCACAACTATGTT 57.376 40.909 0.00 0.00 37.82 2.71
287 288 4.623932 TCTGAGAGGCACAACTATGTTT 57.376 40.909 0.00 0.00 37.82 2.83
288 289 4.569943 TCTGAGAGGCACAACTATGTTTC 58.430 43.478 0.00 0.00 37.82 2.78
289 290 4.284490 TCTGAGAGGCACAACTATGTTTCT 59.716 41.667 0.00 0.00 37.82 2.52
290 291 4.569943 TGAGAGGCACAACTATGTTTCTC 58.430 43.478 0.00 0.00 37.82 2.87
291 292 3.589988 AGAGGCACAACTATGTTTCTCG 58.410 45.455 0.00 0.00 39.29 4.04
292 293 2.076863 AGGCACAACTATGTTTCTCGC 58.923 47.619 0.00 0.00 37.82 5.03
293 294 1.201921 GGCACAACTATGTTTCTCGCG 60.202 52.381 0.00 0.00 37.82 5.87
294 295 1.786928 GCACAACTATGTTTCTCGCGC 60.787 52.381 0.00 0.00 37.82 6.86
295 296 1.459209 CACAACTATGTTTCTCGCGCA 59.541 47.619 8.75 0.00 37.82 6.09
296 297 2.096466 CACAACTATGTTTCTCGCGCAA 60.096 45.455 8.75 0.00 37.82 4.85
297 298 2.157668 ACAACTATGTTTCTCGCGCAAG 59.842 45.455 8.75 0.00 35.91 4.01
333 334 9.971922 GCTTCCATGATAAGCAAATATTTACTT 57.028 29.630 21.12 16.10 46.85 2.24
337 338 9.817365 CCATGATAAGCAAATATTTACTTCTCG 57.183 33.333 15.45 5.96 0.00 4.04
340 341 8.335356 TGATAAGCAAATATTTACTTCTCGTGC 58.665 33.333 15.45 5.99 0.00 5.34
341 342 6.494893 AAGCAAATATTTACTTCTCGTGCA 57.505 33.333 7.71 0.00 31.95 4.57
342 343 6.494893 AGCAAATATTTACTTCTCGTGCAA 57.505 33.333 0.00 0.00 31.95 4.08
343 344 6.908825 AGCAAATATTTACTTCTCGTGCAAA 58.091 32.000 0.00 0.00 31.95 3.68
344 345 7.367285 AGCAAATATTTACTTCTCGTGCAAAA 58.633 30.769 0.00 0.00 31.95 2.44
345 346 7.865385 AGCAAATATTTACTTCTCGTGCAAAAA 59.135 29.630 0.00 0.00 31.95 1.94
399 400 8.314751 CACTATATATCCTTTTTCTGTCCGGAT 58.685 37.037 7.81 0.00 38.07 4.18
402 403 1.702957 TCCTTTTTCTGTCCGGATGGT 59.297 47.619 7.81 0.00 36.30 3.55
411 412 2.227757 TCCGGATGGTGGAAAGCCA 61.228 57.895 0.00 0.00 43.47 4.75
516 519 6.769512 TCCTCAAGTGCTGTAGTCTATTTTT 58.230 36.000 0.00 0.00 0.00 1.94
517 520 6.874134 TCCTCAAGTGCTGTAGTCTATTTTTC 59.126 38.462 0.00 0.00 0.00 2.29
518 521 6.876257 CCTCAAGTGCTGTAGTCTATTTTTCT 59.124 38.462 0.00 0.00 0.00 2.52
523 526 9.952188 AAGTGCTGTAGTCTATTTTTCTTTTTC 57.048 29.630 0.00 0.00 0.00 2.29
604 607 1.597663 CCAATAGTTGCGGACCGATTC 59.402 52.381 20.50 6.29 0.00 2.52
625 629 2.549754 CCGGGCAATATCATGTCTGTTC 59.450 50.000 0.00 0.00 29.04 3.18
630 634 6.268566 GGGCAATATCATGTCTGTTCTTTTC 58.731 40.000 0.00 0.00 0.00 2.29
634 638 9.362539 GCAATATCATGTCTGTTCTTTTCAAAT 57.637 29.630 0.00 0.00 0.00 2.32
672 700 4.115199 GGCGTTGGAGGAGCCCAT 62.115 66.667 0.00 0.00 44.80 4.00
673 701 2.514824 GCGTTGGAGGAGCCCATC 60.515 66.667 0.00 0.00 35.87 3.51
674 702 2.989639 CGTTGGAGGAGCCCATCA 59.010 61.111 0.00 0.00 35.87 3.07
675 703 1.299648 CGTTGGAGGAGCCCATCAA 59.700 57.895 0.00 0.00 35.87 2.57
677 732 1.886222 CGTTGGAGGAGCCCATCAAAA 60.886 52.381 0.00 0.00 35.87 2.44
680 735 1.640149 TGGAGGAGCCCATCAAAATGA 59.360 47.619 0.00 0.00 32.40 2.57
693 748 6.278363 CCATCAAAATGACCTGAATGATTCC 58.722 40.000 2.26 0.00 34.61 3.01
695 750 4.107622 CAAAATGACCTGAATGATTCCGC 58.892 43.478 2.26 0.00 0.00 5.54
728 796 0.096454 GCCTCGCATGTAAAACGTCC 59.904 55.000 0.00 0.00 0.00 4.79
847 915 1.982958 ACTGGAACCAGAACGGGTATT 59.017 47.619 25.03 0.00 46.30 1.89
1020 1098 4.070552 GCAGGTTCGTCGCCTCCT 62.071 66.667 0.00 0.00 33.31 3.69
1059 1137 4.825679 CCACCCTCCCCTCCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
1060 1138 4.825679 CACCCTCCCCTCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
1064 1142 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1096 1174 4.412199 TCCCCGGATTACTTTTCTGATGAT 59.588 41.667 0.73 0.00 0.00 2.45
1546 1943 3.328931 TCCGATCGATTAGGTAGGGTAGT 59.671 47.826 18.66 0.00 0.00 2.73
1547 1944 4.532126 TCCGATCGATTAGGTAGGGTAGTA 59.468 45.833 18.66 0.00 0.00 1.82
1548 1945 4.874966 CCGATCGATTAGGTAGGGTAGTAG 59.125 50.000 18.66 0.00 0.00 2.57
1558 1955 2.372890 GGGTAGTAGGTGGGTGGCC 61.373 68.421 0.00 0.00 0.00 5.36
1657 2066 5.669477 AGTTGAGATGGCTCTGAGTATTTC 58.331 41.667 6.53 7.00 41.84 2.17
1765 2183 8.218488 AGGTGTTTAGAACTTTAGATGGTTTCT 58.782 33.333 0.00 0.00 38.57 2.52
1811 2229 8.246871 GGTTAACTGATACTAGTTCCTAAACGT 58.753 37.037 0.00 0.00 41.01 3.99
1819 2237 9.362539 GATACTAGTTCCTAAACGTTTTCATGA 57.637 33.333 20.19 7.98 40.48 3.07
1834 2252 1.022735 CATGACTGGCTGCAATCTCC 58.977 55.000 0.50 0.00 0.00 3.71
1893 2311 1.059098 AGATTGCTGTCCAGTGTCCA 58.941 50.000 0.00 0.00 0.00 4.02
1895 2313 0.037303 ATTGCTGTCCAGTGTCCAGG 59.963 55.000 8.01 0.00 0.00 4.45
1929 2347 5.957771 AGCATGGTTCCTCATAGTTAGAA 57.042 39.130 0.00 0.00 0.00 2.10
1983 2403 2.277969 CCAGCTCAGATTGCTACAGTG 58.722 52.381 0.00 0.00 38.92 3.66
1988 2408 2.671888 CTCAGATTGCTACAGTGTGCAG 59.328 50.000 16.32 4.89 40.46 4.41
2001 2421 6.187125 ACAGTGTGCAGATAAAATCATGTC 57.813 37.500 0.00 0.00 0.00 3.06
2080 2500 0.831288 CACCACCAAAGCCATGGGAA 60.831 55.000 15.13 0.00 45.18 3.97
2137 2557 2.672908 CCATCTGGAGGCAGCACA 59.327 61.111 0.00 0.00 37.39 4.57
2225 2645 2.721090 GCTGCTTTCAACGTGAACAATC 59.279 45.455 0.00 0.00 35.89 2.67
2350 2770 5.574443 GCTCTTTGTGGCTTGAAATGATAAC 59.426 40.000 0.00 0.00 0.00 1.89
2427 2847 1.541889 GGTGGGGCTTATAGTAACGGC 60.542 57.143 0.00 0.00 0.00 5.68
2436 2856 4.202090 GCTTATAGTAACGGCGGGCTATAT 60.202 45.833 13.24 5.55 0.00 0.86
2538 2958 7.446013 TCAATGTATAATAACGGGATGGGAAAC 59.554 37.037 0.00 0.00 0.00 2.78
2560 2980 0.400213 ATACGGTGGTATGGGCATGG 59.600 55.000 0.00 0.00 37.94 3.66
2633 3053 2.370849 GTTTCTGGGTGTCCTTCCTACA 59.629 50.000 0.00 0.00 0.00 2.74
2725 3145 2.921754 GTTGAGCATGATTCAGCTTTGC 59.078 45.455 0.00 6.89 42.04 3.68
2870 3404 6.854778 TGTATAAAAATTAGTTGGCGGAACC 58.145 36.000 0.00 0.00 34.80 3.62
2914 3449 8.430801 AAATCTATGATCTAAATCTATGGCGC 57.569 34.615 0.00 0.00 32.75 6.53
3026 3563 7.545965 ACAACAATCTATTTACTCTGGTTCTCG 59.454 37.037 0.00 0.00 0.00 4.04
3159 3696 1.200020 GACGAGTGCCTTTCCATTTGG 59.800 52.381 0.00 0.00 0.00 3.28
3207 4161 7.627298 AGTTCTTCTGAATTCTGATCCAATG 57.373 36.000 14.89 3.75 34.40 2.82
3380 4334 1.606668 CGTTGAGGCACCAAAAGCTAA 59.393 47.619 0.00 0.00 0.00 3.09
3399 4353 5.045286 AGCTAACAAGAACTCATGGGAGAAT 60.045 40.000 0.00 0.00 44.26 2.40
3407 4361 3.184628 ACTCATGGGAGAATGTCTGGAA 58.815 45.455 0.00 0.00 44.26 3.53
3439 4393 4.989875 AAGGGAATGTGAGCTGCTATAT 57.010 40.909 0.15 0.00 0.00 0.86
3440 4394 6.351371 GCTAAGGGAATGTGAGCTGCTATATA 60.351 42.308 0.15 0.00 0.00 0.86
3441 4395 6.633325 AAGGGAATGTGAGCTGCTATATAT 57.367 37.500 0.15 0.00 0.00 0.86
3562 4516 1.945819 GCCATTTGAACCAGAGCGAGA 60.946 52.381 0.00 0.00 0.00 4.04
3603 4557 4.996344 TGCTCGTTGTATTTACCGTGATA 58.004 39.130 0.00 0.00 0.00 2.15
3617 4571 4.770795 ACCGTGATATCTTTTCTTCCCTG 58.229 43.478 3.98 0.00 0.00 4.45
3641 4595 3.554259 TCTGTGTAGTGCTGTTACGAG 57.446 47.619 0.00 0.00 0.00 4.18
3758 4713 6.402875 GGTCCACAATATTACTGTTTTCCGTC 60.403 42.308 0.00 0.00 0.00 4.79
3834 4790 1.437986 GCTCCTCGTGATAACGGCT 59.562 57.895 1.94 0.00 0.00 5.52
4041 4997 3.091499 ATGCGCCCTGAGCTCTGAG 62.091 63.158 21.10 9.94 40.39 3.35
4072 5028 3.751698 GCGTTGTTTCTTATCCTCCTTGT 59.248 43.478 0.00 0.00 0.00 3.16
4110 5078 3.070476 TGCAGAGCATGATTTGTACCA 57.930 42.857 3.25 0.00 31.71 3.25
4111 5079 3.623703 TGCAGAGCATGATTTGTACCAT 58.376 40.909 3.25 0.00 31.71 3.55
4112 5080 4.779696 TGCAGAGCATGATTTGTACCATA 58.220 39.130 3.25 0.00 31.71 2.74
4113 5081 4.818005 TGCAGAGCATGATTTGTACCATAG 59.182 41.667 3.25 0.00 31.71 2.23
4153 5121 5.900339 TTGAAAACTGTATGACACGAGAC 57.100 39.130 0.00 0.00 0.00 3.36
4184 5156 2.625737 CATGTGATGTCCTGTGTCTCC 58.374 52.381 0.00 0.00 0.00 3.71
4193 5165 0.038159 CCTGTGTCTCCGACCAAGAC 60.038 60.000 0.00 0.00 42.83 3.01
4264 5236 2.344025 GGTGTATCAGGTTCGTTCACC 58.656 52.381 0.00 0.00 37.33 4.02
4266 5238 1.887854 TGTATCAGGTTCGTTCACCGA 59.112 47.619 0.00 0.00 45.66 4.69
4287 5259 4.560716 CGAGTCCTTAAGTGAACATGGTCA 60.561 45.833 10.05 10.05 0.00 4.02
4301 5273 1.275666 TGGTCACTGGTCCCTGTATG 58.724 55.000 0.00 0.00 0.00 2.39
4305 5277 2.167900 GTCACTGGTCCCTGTATGTACC 59.832 54.545 0.00 0.00 0.00 3.34
4309 5281 1.010294 TGGTCCCTGTATGTACCCCAT 59.990 52.381 0.00 0.00 37.58 4.00
4330 5302 0.981183 ATCGCCAAACAGTCCCACTA 59.019 50.000 0.00 0.00 0.00 2.74
4349 5321 0.102300 AGAGCAACCAAACCAAACGC 59.898 50.000 0.00 0.00 0.00 4.84
4350 5322 0.179124 GAGCAACCAAACCAAACGCA 60.179 50.000 0.00 0.00 0.00 5.24
4366 5338 6.426937 ACCAAACGCACCATATATCAAGATAC 59.573 38.462 0.00 0.00 0.00 2.24
4420 5392 9.036671 ACAGTACCATAAAATTTTCAAAAACCG 57.963 29.630 6.72 0.00 0.00 4.44
4421 5393 9.036671 CAGTACCATAAAATTTTCAAAAACCGT 57.963 29.630 6.72 0.00 0.00 4.83
4425 5397 9.990360 ACCATAAAATTTTCAAAAACCGTAGAT 57.010 25.926 6.72 0.00 0.00 1.98
4429 5401 6.779115 AATTTTCAAAAACCGTAGATTGGC 57.221 33.333 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.954058 ACAAATTTGTTTTCGCGAGAAGCAC 61.954 40.000 18.13 2.57 41.36 4.40
3 4 4.967454 ACAAATTTGTTTTCGCGAGAAGCA 60.967 37.500 18.13 13.21 41.36 3.91
4 5 3.485743 ACAAATTTGTTTTCGCGAGAAGC 59.514 39.130 18.13 10.90 41.36 3.86
5 6 6.797033 AGATACAAATTTGTTTTCGCGAGAAG 59.203 34.615 27.66 1.79 45.77 2.85
6 7 6.664515 AGATACAAATTTGTTTTCGCGAGAA 58.335 32.000 27.66 8.82 44.62 2.87
7 8 6.236017 AGATACAAATTTGTTTTCGCGAGA 57.764 33.333 27.66 0.43 42.35 4.04
8 9 5.508224 GGAGATACAAATTTGTTTTCGCGAG 59.492 40.000 27.66 0.00 42.35 5.03
9 10 5.049336 TGGAGATACAAATTTGTTTTCGCGA 60.049 36.000 27.66 19.21 42.35 5.87
10 11 5.059221 GTGGAGATACAAATTTGTTTTCGCG 59.941 40.000 27.66 0.00 42.35 5.87
11 12 5.059221 CGTGGAGATACAAATTTGTTTTCGC 59.941 40.000 27.66 22.93 42.35 4.70
12 13 6.367421 TCGTGGAGATACAAATTTGTTTTCG 58.633 36.000 27.66 19.94 42.35 3.46
13 14 7.581476 TCTCGTGGAGATACAAATTTGTTTTC 58.419 34.615 27.66 22.50 36.89 2.29
14 15 7.504924 TCTCGTGGAGATACAAATTTGTTTT 57.495 32.000 27.66 16.19 36.89 2.43
15 16 7.504924 TTCTCGTGGAGATACAAATTTGTTT 57.495 32.000 27.66 20.31 38.56 2.83
16 17 6.348540 GCTTCTCGTGGAGATACAAATTTGTT 60.349 38.462 27.66 15.71 38.56 2.83
17 18 5.122396 GCTTCTCGTGGAGATACAAATTTGT 59.878 40.000 25.99 25.99 38.56 2.83
18 19 5.122239 TGCTTCTCGTGGAGATACAAATTTG 59.878 40.000 16.67 16.67 38.56 2.32
19 20 5.245531 TGCTTCTCGTGGAGATACAAATTT 58.754 37.500 0.00 0.00 38.56 1.82
20 21 4.832248 TGCTTCTCGTGGAGATACAAATT 58.168 39.130 0.00 0.00 38.56 1.82
21 22 4.471904 TGCTTCTCGTGGAGATACAAAT 57.528 40.909 0.00 0.00 38.56 2.32
22 23 3.953712 TGCTTCTCGTGGAGATACAAA 57.046 42.857 0.00 0.00 38.56 2.83
23 24 3.953712 TTGCTTCTCGTGGAGATACAA 57.046 42.857 0.00 2.19 38.56 2.41
24 25 3.006430 TGTTTGCTTCTCGTGGAGATACA 59.994 43.478 0.00 0.00 38.56 2.29
25 26 3.585862 TGTTTGCTTCTCGTGGAGATAC 58.414 45.455 0.00 0.00 38.56 2.24
26 27 3.953712 TGTTTGCTTCTCGTGGAGATA 57.046 42.857 0.00 0.00 38.56 1.98
27 28 2.839486 TGTTTGCTTCTCGTGGAGAT 57.161 45.000 0.00 0.00 38.56 2.75
28 29 2.613026 TTGTTTGCTTCTCGTGGAGA 57.387 45.000 0.00 0.00 36.86 3.71
29 30 3.904136 ATTTGTTTGCTTCTCGTGGAG 57.096 42.857 0.00 0.00 0.00 3.86
30 31 4.759693 ACATATTTGTTTGCTTCTCGTGGA 59.240 37.500 0.00 0.00 29.55 4.02
31 32 4.853196 CACATATTTGTTTGCTTCTCGTGG 59.147 41.667 0.00 0.00 32.34 4.94
32 33 4.321745 GCACATATTTGTTTGCTTCTCGTG 59.678 41.667 0.00 0.00 32.34 4.35
33 34 4.216257 AGCACATATTTGTTTGCTTCTCGT 59.784 37.500 0.00 0.00 32.77 4.18
34 35 4.726416 AGCACATATTTGTTTGCTTCTCG 58.274 39.130 0.00 0.00 32.77 4.04
38 39 5.156355 CGAGAAGCACATATTTGTTTGCTT 58.844 37.500 11.89 11.89 43.74 3.91
39 40 4.216257 ACGAGAAGCACATATTTGTTTGCT 59.784 37.500 0.00 0.00 36.85 3.91
40 41 4.321745 CACGAGAAGCACATATTTGTTTGC 59.678 41.667 0.00 0.00 32.34 3.68
41 42 5.688823 TCACGAGAAGCACATATTTGTTTG 58.311 37.500 0.00 0.00 32.34 2.93
42 43 5.940192 TCACGAGAAGCACATATTTGTTT 57.060 34.783 0.00 0.00 32.34 2.83
43 44 5.940192 TTCACGAGAAGCACATATTTGTT 57.060 34.783 0.00 0.00 32.34 2.83
44 45 5.617751 GCTTTCACGAGAAGCACATATTTGT 60.618 40.000 14.12 0.00 34.71 2.83
45 46 4.790140 GCTTTCACGAGAAGCACATATTTG 59.210 41.667 14.12 0.00 34.71 2.32
46 47 4.455533 TGCTTTCACGAGAAGCACATATTT 59.544 37.500 16.57 0.00 34.92 1.40
47 48 4.002982 TGCTTTCACGAGAAGCACATATT 58.997 39.130 16.57 0.00 34.92 1.28
48 49 3.599343 TGCTTTCACGAGAAGCACATAT 58.401 40.909 16.57 0.00 34.92 1.78
49 50 3.038788 TGCTTTCACGAGAAGCACATA 57.961 42.857 16.57 0.40 34.92 2.29
50 51 1.882912 TGCTTTCACGAGAAGCACAT 58.117 45.000 16.57 0.00 34.92 3.21
51 52 1.662517 TTGCTTTCACGAGAAGCACA 58.337 45.000 18.97 7.11 37.51 4.57
52 53 2.755836 TTTGCTTTCACGAGAAGCAC 57.244 45.000 18.97 4.99 37.51 4.40
53 54 3.773860 TTTTTGCTTTCACGAGAAGCA 57.226 38.095 16.57 16.57 36.67 3.91
81 82 5.124457 GCACATCTATGCCTCTTGAGAAAAA 59.876 40.000 0.00 0.00 39.86 1.94
82 83 4.637534 GCACATCTATGCCTCTTGAGAAAA 59.362 41.667 0.00 0.00 39.86 2.29
83 84 4.194640 GCACATCTATGCCTCTTGAGAAA 58.805 43.478 0.00 0.00 39.86 2.52
84 85 3.801698 GCACATCTATGCCTCTTGAGAA 58.198 45.455 0.00 0.00 39.86 2.87
85 86 3.465742 GCACATCTATGCCTCTTGAGA 57.534 47.619 0.00 0.00 39.86 3.27
86 87 4.443175 AGAAGCACATCTATGCCTCTTGAG 60.443 45.833 0.00 0.00 42.52 3.02
87 88 3.453717 AGAAGCACATCTATGCCTCTTGA 59.546 43.478 0.00 0.00 42.52 3.02
88 89 3.806380 AGAAGCACATCTATGCCTCTTG 58.194 45.455 0.00 0.00 42.52 3.02
89 90 3.492309 CGAGAAGCACATCTATGCCTCTT 60.492 47.826 0.72 0.00 44.61 2.85
90 91 2.035704 CGAGAAGCACATCTATGCCTCT 59.964 50.000 0.00 0.00 46.72 3.69
104 105 1.202428 AGATTTACTCCCGCGAGAAGC 60.202 52.381 8.23 0.00 38.52 3.86
105 106 2.159226 ACAGATTTACTCCCGCGAGAAG 60.159 50.000 8.23 3.99 38.52 2.85
106 107 1.822990 ACAGATTTACTCCCGCGAGAA 59.177 47.619 8.23 0.00 38.52 2.87
107 108 1.134367 CACAGATTTACTCCCGCGAGA 59.866 52.381 8.23 0.00 38.52 4.04
108 109 1.135083 ACACAGATTTACTCCCGCGAG 60.135 52.381 8.23 0.00 42.32 5.03
109 110 0.892755 ACACAGATTTACTCCCGCGA 59.107 50.000 8.23 0.00 0.00 5.87
110 111 1.135083 AGACACAGATTTACTCCCGCG 60.135 52.381 0.00 0.00 0.00 6.46
111 112 2.541556 GAGACACAGATTTACTCCCGC 58.458 52.381 0.00 0.00 0.00 6.13
112 113 2.496070 TGGAGACACAGATTTACTCCCG 59.504 50.000 0.00 0.00 44.29 5.14
127 128 6.855836 TGACATATTTGCTTTTGATGGAGAC 58.144 36.000 0.00 0.00 0.00 3.36
128 129 7.649533 ATGACATATTTGCTTTTGATGGAGA 57.350 32.000 0.00 0.00 0.00 3.71
129 130 9.976511 ATAATGACATATTTGCTTTTGATGGAG 57.023 29.630 0.00 0.00 0.00 3.86
134 135 8.871862 GCACAATAATGACATATTTGCTTTTGA 58.128 29.630 9.18 0.00 32.60 2.69
135 136 8.657729 TGCACAATAATGACATATTTGCTTTTG 58.342 29.630 9.18 3.66 34.30 2.44
136 137 8.774890 TGCACAATAATGACATATTTGCTTTT 57.225 26.923 9.18 0.00 34.30 2.27
137 138 8.774890 TTGCACAATAATGACATATTTGCTTT 57.225 26.923 9.18 0.00 34.30 3.51
138 139 8.252417 TCTTGCACAATAATGACATATTTGCTT 58.748 29.630 9.18 0.00 34.30 3.91
139 140 7.774134 TCTTGCACAATAATGACATATTTGCT 58.226 30.769 9.18 0.00 34.30 3.91
140 141 7.990541 TCTTGCACAATAATGACATATTTGC 57.009 32.000 9.18 5.52 34.07 3.68
176 177 8.232913 ACTGTGCCTCTCAAAAATAGTAAAAA 57.767 30.769 0.00 0.00 0.00 1.94
177 178 7.307751 CGACTGTGCCTCTCAAAAATAGTAAAA 60.308 37.037 0.00 0.00 0.00 1.52
178 179 6.147164 CGACTGTGCCTCTCAAAAATAGTAAA 59.853 38.462 0.00 0.00 0.00 2.01
179 180 5.637810 CGACTGTGCCTCTCAAAAATAGTAA 59.362 40.000 0.00 0.00 0.00 2.24
180 181 5.168569 CGACTGTGCCTCTCAAAAATAGTA 58.831 41.667 0.00 0.00 0.00 1.82
181 182 3.997021 CGACTGTGCCTCTCAAAAATAGT 59.003 43.478 0.00 0.00 0.00 2.12
182 183 3.997021 ACGACTGTGCCTCTCAAAAATAG 59.003 43.478 0.00 0.00 0.00 1.73
183 184 3.745975 CACGACTGTGCCTCTCAAAAATA 59.254 43.478 0.00 0.00 39.67 1.40
184 185 2.549754 CACGACTGTGCCTCTCAAAAAT 59.450 45.455 0.00 0.00 39.67 1.82
185 186 1.939934 CACGACTGTGCCTCTCAAAAA 59.060 47.619 0.00 0.00 39.67 1.94
186 187 1.581934 CACGACTGTGCCTCTCAAAA 58.418 50.000 0.00 0.00 39.67 2.44
187 188 0.249868 CCACGACTGTGCCTCTCAAA 60.250 55.000 0.00 0.00 45.04 2.69
188 189 1.367471 CCACGACTGTGCCTCTCAA 59.633 57.895 0.00 0.00 45.04 3.02
189 190 1.399744 AACCACGACTGTGCCTCTCA 61.400 55.000 0.00 0.00 45.04 3.27
190 191 0.667792 GAACCACGACTGTGCCTCTC 60.668 60.000 0.00 0.00 45.04 3.20
191 192 1.115930 AGAACCACGACTGTGCCTCT 61.116 55.000 0.00 0.00 45.04 3.69
192 193 0.667792 GAGAACCACGACTGTGCCTC 60.668 60.000 0.00 0.00 45.04 4.70
193 194 1.367840 GAGAACCACGACTGTGCCT 59.632 57.895 0.00 0.00 45.04 4.75
194 195 1.069090 TGAGAACCACGACTGTGCC 59.931 57.895 0.00 0.00 45.04 5.01
195 196 2.226269 GTGAGAACCACGACTGTGC 58.774 57.895 0.00 0.00 45.04 4.57
203 204 1.305201 TTTGCTTCCGTGAGAACCAC 58.695 50.000 0.00 0.00 42.30 4.16
204 205 2.270352 ATTTGCTTCCGTGAGAACCA 57.730 45.000 0.00 0.00 0.00 3.67
205 206 3.643159 AAATTTGCTTCCGTGAGAACC 57.357 42.857 0.00 0.00 0.00 3.62
206 207 5.315118 CAAAAATTTGCTTCCGTGAGAAC 57.685 39.130 0.00 0.00 0.00 3.01
219 220 7.215696 TGTTTACACGAGAAGCAAAAATTTG 57.784 32.000 1.52 1.52 41.03 2.32
220 221 7.820044 TTGTTTACACGAGAAGCAAAAATTT 57.180 28.000 0.00 0.00 0.00 1.82
221 222 7.820044 TTTGTTTACACGAGAAGCAAAAATT 57.180 28.000 0.00 0.00 35.09 1.82
222 223 7.820044 TTTTGTTTACACGAGAAGCAAAAAT 57.180 28.000 15.19 0.00 41.20 1.82
223 224 7.639162 TTTTTGTTTACACGAGAAGCAAAAA 57.361 28.000 20.32 20.32 45.98 1.94
244 245 9.354673 TCAGAAAAGGAGAAGACATGTATTTTT 57.645 29.630 7.23 3.49 0.00 1.94
245 246 8.924511 TCAGAAAAGGAGAAGACATGTATTTT 57.075 30.769 7.23 0.90 0.00 1.82
246 247 8.378565 TCTCAGAAAAGGAGAAGACATGTATTT 58.621 33.333 7.23 0.74 38.40 1.40
247 248 7.911651 TCTCAGAAAAGGAGAAGACATGTATT 58.088 34.615 5.18 5.18 38.40 1.89
248 249 7.364585 CCTCTCAGAAAAGGAGAAGACATGTAT 60.365 40.741 0.00 0.00 40.64 2.29
249 250 6.071108 CCTCTCAGAAAAGGAGAAGACATGTA 60.071 42.308 0.00 0.00 40.64 2.29
250 251 5.279910 CCTCTCAGAAAAGGAGAAGACATGT 60.280 44.000 0.00 0.00 40.64 3.21
251 252 5.177326 CCTCTCAGAAAAGGAGAAGACATG 58.823 45.833 0.00 0.00 40.64 3.21
252 253 4.323409 GCCTCTCAGAAAAGGAGAAGACAT 60.323 45.833 3.10 0.00 40.64 3.06
253 254 3.007398 GCCTCTCAGAAAAGGAGAAGACA 59.993 47.826 3.10 0.00 40.64 3.41
254 255 3.007398 TGCCTCTCAGAAAAGGAGAAGAC 59.993 47.826 3.10 0.00 40.64 3.01
255 256 3.007398 GTGCCTCTCAGAAAAGGAGAAGA 59.993 47.826 3.10 0.00 40.64 2.87
256 257 3.244353 TGTGCCTCTCAGAAAAGGAGAAG 60.244 47.826 3.10 0.00 40.64 2.85
257 258 2.705658 TGTGCCTCTCAGAAAAGGAGAA 59.294 45.455 3.10 0.00 40.64 2.87
258 259 2.329267 TGTGCCTCTCAGAAAAGGAGA 58.671 47.619 3.10 0.00 39.01 3.71
259 260 2.810852 GTTGTGCCTCTCAGAAAAGGAG 59.189 50.000 3.10 0.00 34.35 3.69
260 261 2.439507 AGTTGTGCCTCTCAGAAAAGGA 59.560 45.455 3.10 0.00 34.35 3.36
261 262 2.856222 AGTTGTGCCTCTCAGAAAAGG 58.144 47.619 0.00 0.00 35.65 3.11
262 263 4.999950 ACATAGTTGTGCCTCTCAGAAAAG 59.000 41.667 0.00 0.00 33.85 2.27
263 264 4.973168 ACATAGTTGTGCCTCTCAGAAAA 58.027 39.130 0.00 0.00 33.85 2.29
264 265 4.623932 ACATAGTTGTGCCTCTCAGAAA 57.376 40.909 0.00 0.00 33.85 2.52
265 266 4.623932 AACATAGTTGTGCCTCTCAGAA 57.376 40.909 0.00 0.00 35.83 3.02
266 267 4.284490 AGAAACATAGTTGTGCCTCTCAGA 59.716 41.667 0.00 0.00 35.83 3.27
267 268 4.573900 AGAAACATAGTTGTGCCTCTCAG 58.426 43.478 0.00 0.00 35.83 3.35
268 269 4.569943 GAGAAACATAGTTGTGCCTCTCA 58.430 43.478 0.00 0.00 37.12 3.27
269 270 3.614616 CGAGAAACATAGTTGTGCCTCTC 59.385 47.826 0.00 0.00 35.83 3.20
270 271 3.589988 CGAGAAACATAGTTGTGCCTCT 58.410 45.455 0.00 0.00 35.83 3.69
271 272 2.094417 GCGAGAAACATAGTTGTGCCTC 59.906 50.000 0.00 0.00 35.83 4.70
272 273 2.076863 GCGAGAAACATAGTTGTGCCT 58.923 47.619 0.00 0.00 35.83 4.75
273 274 1.201921 CGCGAGAAACATAGTTGTGCC 60.202 52.381 0.00 0.00 35.83 5.01
274 275 1.786928 GCGCGAGAAACATAGTTGTGC 60.787 52.381 12.10 0.00 35.83 4.57
275 276 1.459209 TGCGCGAGAAACATAGTTGTG 59.541 47.619 12.10 0.00 35.83 3.33
276 277 1.790755 TGCGCGAGAAACATAGTTGT 58.209 45.000 12.10 0.00 37.82 3.32
277 278 2.762472 CTTGCGCGAGAAACATAGTTG 58.238 47.619 20.57 0.00 0.00 3.16
278 279 1.128692 GCTTGCGCGAGAAACATAGTT 59.871 47.619 29.00 0.00 0.00 2.24
279 280 0.721718 GCTTGCGCGAGAAACATAGT 59.278 50.000 29.00 0.00 0.00 2.12
280 281 0.721154 TGCTTGCGCGAGAAACATAG 59.279 50.000 29.00 0.00 39.65 2.23
281 282 1.152510 TTGCTTGCGCGAGAAACATA 58.847 45.000 29.00 0.00 39.65 2.29
282 283 0.310543 TTTGCTTGCGCGAGAAACAT 59.689 45.000 29.00 0.00 39.65 2.71
283 284 0.310543 ATTTGCTTGCGCGAGAAACA 59.689 45.000 29.00 13.86 39.65 2.83
284 285 2.241259 TATTTGCTTGCGCGAGAAAC 57.759 45.000 29.00 11.23 39.65 2.78
285 286 2.161410 ACATATTTGCTTGCGCGAGAAA 59.839 40.909 29.00 22.01 39.65 2.52
286 287 1.737236 ACATATTTGCTTGCGCGAGAA 59.263 42.857 29.00 16.37 39.65 2.87
287 288 1.062440 CACATATTTGCTTGCGCGAGA 59.938 47.619 29.00 8.00 39.65 4.04
288 289 1.459756 CACATATTTGCTTGCGCGAG 58.540 50.000 20.86 20.86 39.65 5.03
289 290 0.523125 GCACATATTTGCTTGCGCGA 60.523 50.000 12.10 0.00 39.59 5.87
290 291 1.912281 GCACATATTTGCTTGCGCG 59.088 52.632 0.00 0.00 39.59 6.86
297 298 5.632347 GCTTATCATGGAAGCACATATTTGC 59.368 40.000 21.43 5.69 46.97 3.68
311 312 9.817365 CGAGAAGTAAATATTTGCTTATCATGG 57.183 33.333 33.32 22.31 45.26 3.66
314 315 8.335356 GCACGAGAAGTAAATATTTGCTTATCA 58.665 33.333 33.32 7.28 45.26 2.15
315 316 8.335356 TGCACGAGAAGTAAATATTTGCTTATC 58.665 33.333 29.00 29.00 43.17 1.75
316 317 8.208718 TGCACGAGAAGTAAATATTTGCTTAT 57.791 30.769 25.49 23.39 41.99 1.73
317 318 7.603963 TGCACGAGAAGTAAATATTTGCTTA 57.396 32.000 25.49 10.32 41.99 3.09
318 319 6.494893 TGCACGAGAAGTAAATATTTGCTT 57.505 33.333 25.66 25.66 44.07 3.91
319 320 6.494893 TTGCACGAGAAGTAAATATTTGCT 57.505 33.333 12.47 12.47 34.50 3.91
320 321 7.561237 TTTTGCACGAGAAGTAAATATTTGC 57.439 32.000 11.05 9.53 0.00 3.68
363 364 8.697507 AAAAGGATATATAGTGGCTTTGGAAG 57.302 34.615 0.00 0.00 0.00 3.46
364 365 9.131791 GAAAAAGGATATATAGTGGCTTTGGAA 57.868 33.333 0.00 0.00 0.00 3.53
375 376 7.766278 CCATCCGGACAGAAAAAGGATATATAG 59.234 40.741 6.12 0.00 39.47 1.31
378 379 5.368523 ACCATCCGGACAGAAAAAGGATATA 59.631 40.000 6.12 0.00 39.47 0.86
386 387 1.060729 TCCACCATCCGGACAGAAAA 58.939 50.000 6.12 0.00 35.59 2.29
490 493 6.360370 AATAGACTACAGCACTTGAGGAAA 57.640 37.500 0.00 0.00 0.00 3.13
494 497 7.897575 AGAAAAATAGACTACAGCACTTGAG 57.102 36.000 0.00 0.00 0.00 3.02
504 507 9.952188 AGCACTTGAAAAAGAAAAATAGACTAC 57.048 29.630 0.00 0.00 0.00 2.73
516 519 3.378112 CCACTGTGAGCACTTGAAAAAGA 59.622 43.478 9.86 0.00 0.00 2.52
517 520 3.699067 CCACTGTGAGCACTTGAAAAAG 58.301 45.455 9.86 0.00 0.00 2.27
518 521 2.159254 GCCACTGTGAGCACTTGAAAAA 60.159 45.455 9.86 0.00 0.00 1.94
523 526 2.610694 CCGCCACTGTGAGCACTTG 61.611 63.158 9.86 0.00 0.00 3.16
557 560 1.401539 GCCTTTCGCCATTGTGACTTC 60.402 52.381 0.00 0.00 0.00 3.01
604 607 2.260844 ACAGACATGATATTGCCCGG 57.739 50.000 0.00 0.00 0.00 5.73
614 618 6.485313 ACGGTATTTGAAAAGAACAGACATGA 59.515 34.615 0.00 0.00 0.00 3.07
616 620 6.262273 ACACGGTATTTGAAAAGAACAGACAT 59.738 34.615 0.00 0.00 0.00 3.06
625 629 4.477302 AACGGACACGGTATTTGAAAAG 57.523 40.909 0.00 0.00 46.48 2.27
630 634 2.350007 CCACAAACGGACACGGTATTTG 60.350 50.000 0.00 0.00 40.63 2.32
634 638 1.069427 CCCACAAACGGACACGGTA 59.931 57.895 0.00 0.00 40.63 4.02
635 639 2.203098 CCCACAAACGGACACGGT 60.203 61.111 0.00 0.00 45.80 4.83
666 694 2.905415 TCAGGTCATTTTGATGGGCT 57.095 45.000 0.00 0.00 0.00 5.19
671 699 5.450965 GCGGAATCATTCAGGTCATTTTGAT 60.451 40.000 0.00 0.00 0.00 2.57
672 700 4.142403 GCGGAATCATTCAGGTCATTTTGA 60.142 41.667 0.00 0.00 0.00 2.69
673 701 4.107622 GCGGAATCATTCAGGTCATTTTG 58.892 43.478 0.00 0.00 0.00 2.44
674 702 3.131046 GGCGGAATCATTCAGGTCATTTT 59.869 43.478 0.00 0.00 0.00 1.82
675 703 2.689983 GGCGGAATCATTCAGGTCATTT 59.310 45.455 0.00 0.00 0.00 2.32
677 732 1.477558 GGGCGGAATCATTCAGGTCAT 60.478 52.381 0.00 0.00 0.00 3.06
680 735 1.153168 CGGGCGGAATCATTCAGGT 60.153 57.895 0.00 0.00 0.00 4.00
693 748 2.820037 GCCTTTTCTCCTCGGGCG 60.820 66.667 0.00 0.00 33.30 6.13
695 750 1.222113 GAGGCCTTTTCTCCTCGGG 59.778 63.158 6.77 0.00 39.43 5.14
728 796 4.760047 CTCGTGGGCCTCCGTTGG 62.760 72.222 4.53 0.00 35.24 3.77
847 915 1.304713 GTCTAGGGTGACGGGTGGA 60.305 63.158 0.00 0.00 0.00 4.02
958 1031 2.109126 GCTAGTTCTGCGGCCCTTG 61.109 63.158 0.00 0.00 0.00 3.61
1047 1125 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1052 1130 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1057 1135 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1080 1158 7.012704 CGATCCAACCATCATCAGAAAAGTAAT 59.987 37.037 0.00 0.00 0.00 1.89
1096 1174 1.674519 CCAACACGATCGATCCAACCA 60.675 52.381 24.34 0.00 0.00 3.67
1546 1943 1.136961 TGAACATGGCCACCCACCTA 61.137 55.000 8.16 0.00 45.77 3.08
1547 1944 2.430704 CTGAACATGGCCACCCACCT 62.431 60.000 8.16 0.00 45.77 4.00
1548 1945 1.978617 CTGAACATGGCCACCCACC 60.979 63.158 8.16 0.00 45.77 4.61
1558 1955 2.157668 CCGAAAGACGTTCCTGAACATG 59.842 50.000 10.38 0.00 41.20 3.21
1657 2066 8.993121 GGTTTGACATATAATACCTCACATGAG 58.007 37.037 0.00 1.63 41.71 2.90
1750 2168 5.241728 GTGCAGGAAAGAAACCATCTAAAGT 59.758 40.000 0.00 0.00 37.42 2.66
1751 2169 5.241506 TGTGCAGGAAAGAAACCATCTAAAG 59.758 40.000 0.00 0.00 37.42 1.85
1752 2170 5.136828 TGTGCAGGAAAGAAACCATCTAAA 58.863 37.500 0.00 0.00 37.42 1.85
1753 2171 4.724399 TGTGCAGGAAAGAAACCATCTAA 58.276 39.130 0.00 0.00 37.42 2.10
1811 2229 3.159472 AGATTGCAGCCAGTCATGAAAA 58.841 40.909 0.00 0.00 30.73 2.29
1819 2237 2.437359 GCGGAGATTGCAGCCAGT 60.437 61.111 0.00 0.00 0.00 4.00
1893 2311 2.110011 ACCATGCTTTTACTTCCACCCT 59.890 45.455 0.00 0.00 0.00 4.34
1895 2313 3.056821 GGAACCATGCTTTTACTTCCACC 60.057 47.826 0.00 0.00 0.00 4.61
1929 2347 7.597743 GTGACTGAATGAAATGAAGAAATTGCT 59.402 33.333 0.00 0.00 0.00 3.91
1983 2403 7.312657 TGAAGAGACATGATTTTATCTGCAC 57.687 36.000 0.00 0.00 0.00 4.57
2001 2421 8.260818 TGAAGGGATTGTTCTAACTATGAAGAG 58.739 37.037 0.00 0.00 0.00 2.85
2137 2557 0.180406 AGGCCTCAACAACGTCACTT 59.820 50.000 0.00 0.00 0.00 3.16
2225 2645 2.987547 CACAGGCCCTGCAACTGG 60.988 66.667 11.63 2.95 36.57 4.00
2350 2770 7.388500 ACCATAACCTGCATTTTGATTGAAAAG 59.612 33.333 0.00 0.00 36.97 2.27
2427 2847 8.506168 ACATGTTATTATTTCCATATAGCCCG 57.494 34.615 0.00 0.00 0.00 6.13
2560 2980 1.840635 AGGACCCTGATTGTAAGGAGC 59.159 52.381 0.00 0.00 36.91 4.70
2685 3105 8.352201 TGCTCAACTGTATGGATTATAAATTGC 58.648 33.333 0.00 0.00 0.00 3.56
2725 3145 5.415389 TCACCATATGAAGGACACAATTGTG 59.585 40.000 32.03 32.03 42.39 3.33
2856 3308 0.179023 AAACCGGTTCCGCCAACTAA 60.179 50.000 22.53 0.00 36.97 2.24
2864 3316 0.309612 CAAACCTGAAACCGGTTCCG 59.690 55.000 22.53 11.65 43.66 4.30
2870 3404 2.178912 TCTAGCCAAACCTGAAACCG 57.821 50.000 0.00 0.00 0.00 4.44
2914 3449 1.295357 TGTGCGTTGGACAATAGCCG 61.295 55.000 11.11 1.95 0.00 5.52
3006 3543 5.594725 TCAGCGAGAACCAGAGTAAATAGAT 59.405 40.000 0.00 0.00 0.00 1.98
3159 3696 7.279758 ACTTAAGAAGCATGCTTGAATAGAGTC 59.720 37.037 36.48 18.81 32.56 3.36
3380 4334 4.288105 AGACATTCTCCCATGAGTTCTTGT 59.712 41.667 0.00 0.00 39.75 3.16
3399 4353 1.600511 TAGCATCGCCGTTCCAGACA 61.601 55.000 0.00 0.00 0.00 3.41
3407 4361 0.532862 CATTCCCTTAGCATCGCCGT 60.533 55.000 0.00 0.00 0.00 5.68
3439 4393 4.306600 CTGTCACTGTAACTGCACACATA 58.693 43.478 0.00 0.00 0.00 2.29
3440 4394 3.133691 CTGTCACTGTAACTGCACACAT 58.866 45.455 0.00 0.00 0.00 3.21
3441 4395 2.549926 CTGTCACTGTAACTGCACACA 58.450 47.619 0.00 0.00 0.00 3.72
3562 4516 5.357032 CGAGCAATAGGGATTACTTGGTTTT 59.643 40.000 0.00 0.00 30.17 2.43
3603 4557 5.251700 ACACAGATACCAGGGAAGAAAAGAT 59.748 40.000 0.00 0.00 0.00 2.40
3617 4571 4.103357 CGTAACAGCACTACACAGATACC 58.897 47.826 0.00 0.00 0.00 2.73
3641 4595 1.597742 TTCTCACAGCAGCAAACTCC 58.402 50.000 0.00 0.00 0.00 3.85
3799 4755 2.228059 GAGCGCCAGTATACTCCTGTA 58.772 52.381 2.29 0.00 0.00 2.74
3834 4790 7.568349 ACTGTGAGAGCAGATAATAATTCCAA 58.432 34.615 0.00 0.00 39.62 3.53
3939 4895 0.767375 TCTGCAAGAGCCCAAGAACT 59.233 50.000 0.00 0.00 38.67 3.01
4041 4997 1.725973 GAAACAACGCGCTTCAGCC 60.726 57.895 5.73 0.00 37.91 4.85
4072 5028 1.804151 GCATAAACGACAGTCAGGCAA 59.196 47.619 0.41 0.00 0.00 4.52
4108 5076 3.350833 AGGCAAAAGTTCAGAGCTATGG 58.649 45.455 8.78 0.00 0.00 2.74
4109 5077 5.382618 AAAGGCAAAAGTTCAGAGCTATG 57.617 39.130 0.69 0.69 0.00 2.23
4110 5078 5.536161 TCAAAAGGCAAAAGTTCAGAGCTAT 59.464 36.000 0.00 0.00 0.00 2.97
4111 5079 4.887071 TCAAAAGGCAAAAGTTCAGAGCTA 59.113 37.500 0.00 0.00 0.00 3.32
4112 5080 3.701040 TCAAAAGGCAAAAGTTCAGAGCT 59.299 39.130 0.00 0.00 0.00 4.09
4113 5081 4.045636 TCAAAAGGCAAAAGTTCAGAGC 57.954 40.909 0.00 0.00 0.00 4.09
4153 5121 4.361451 GACATCACATGGCCTTTACAAG 57.639 45.455 3.32 0.00 29.82 3.16
4184 5156 0.108615 AATCTGCTCCGTCTTGGTCG 60.109 55.000 0.00 0.00 39.52 4.79
4226 5198 2.320587 CCACAAGACCTGCGTCAGC 61.321 63.158 1.84 0.00 41.87 4.26
4264 5236 3.926616 ACCATGTTCACTTAAGGACTCG 58.073 45.455 7.53 0.00 0.00 4.18
4266 5238 4.642429 GTGACCATGTTCACTTAAGGACT 58.358 43.478 15.53 0.00 42.36 3.85
4287 5259 1.624391 GGGGTACATACAGGGACCAGT 60.624 57.143 0.00 0.00 33.33 4.00
4301 5273 2.616842 CTGTTTGGCGATAATGGGGTAC 59.383 50.000 0.00 0.00 0.00 3.34
4305 5277 1.676006 GGACTGTTTGGCGATAATGGG 59.324 52.381 0.00 0.00 0.00 4.00
4309 5281 1.349688 AGTGGGACTGTTTGGCGATAA 59.650 47.619 0.00 0.00 0.00 1.75
4330 5302 0.102300 GCGTTTGGTTTGGTTGCTCT 59.898 50.000 0.00 0.00 0.00 4.09
4394 5366 9.036671 CGGTTTTTGAAAATTTTATGGTACTGT 57.963 29.630 2.75 0.00 0.00 3.55
4395 5367 9.036671 ACGGTTTTTGAAAATTTTATGGTACTG 57.963 29.630 2.75 7.60 0.00 2.74
4399 5371 9.990360 ATCTACGGTTTTTGAAAATTTTATGGT 57.010 25.926 2.75 0.00 0.00 3.55
4403 5375 8.766151 GCCAATCTACGGTTTTTGAAAATTTTA 58.234 29.630 2.75 0.00 0.00 1.52
4404 5376 7.635423 GCCAATCTACGGTTTTTGAAAATTTT 58.365 30.769 2.28 2.28 0.00 1.82
4405 5377 7.184800 GCCAATCTACGGTTTTTGAAAATTT 57.815 32.000 0.00 0.00 0.00 1.82
4406 5378 6.779115 GCCAATCTACGGTTTTTGAAAATT 57.221 33.333 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.