Multiple sequence alignment - TraesCS5A01G424000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5A01G424000
chr5A
100.000
2496
0
0
1
2496
609788773
609791268
0.000000e+00
4610.0
1
TraesCS5A01G424000
chr5A
84.688
849
93
22
919
1738
609812833
609813673
0.000000e+00
813.0
2
TraesCS5A01G424000
chr5A
100.000
54
0
0
2772
2825
609791544
609791597
1.790000e-17
100.0
3
TraesCS5A01G424000
chr5A
84.091
88
6
5
1977
2056
609813881
609813968
8.390000e-11
78.7
4
TraesCS5A01G424000
chr5D
88.614
1133
53
35
672
1756
488783306
488784410
0.000000e+00
1308.0
5
TraesCS5A01G424000
chr5D
86.420
810
71
22
941
1719
488837675
488838476
0.000000e+00
850.0
6
TraesCS5A01G424000
chr5D
92.188
512
23
6
1988
2496
488784610
488785107
0.000000e+00
708.0
7
TraesCS5A01G424000
chr5D
91.844
282
23
0
180
461
488781943
488782224
7.340000e-106
394.0
8
TraesCS5A01G424000
chr5D
92.975
242
9
4
450
686
488783046
488783284
2.080000e-91
346.0
9
TraesCS5A01G424000
chr5D
89.610
154
15
1
1769
1921
434565361
434565514
7.990000e-46
195.0
10
TraesCS5A01G424000
chr5B
92.457
875
31
11
915
1756
602066813
602067685
0.000000e+00
1218.0
11
TraesCS5A01G424000
chr5B
89.536
927
59
22
1
915
602065885
602066785
0.000000e+00
1140.0
12
TraesCS5A01G424000
chr5B
87.329
805
68
19
941
1719
602137955
602138751
0.000000e+00
891.0
13
TraesCS5A01G424000
chr3D
78.940
679
109
20
1071
1719
482501344
482502018
5.590000e-117
431.0
14
TraesCS5A01G424000
chr3D
90.260
154
14
1
1765
1917
312750020
312750173
1.720000e-47
200.0
15
TraesCS5A01G424000
chr3D
89.333
150
15
1
1769
1917
61601047
61601196
1.340000e-43
187.0
16
TraesCS5A01G424000
chr3D
75.563
311
53
17
2192
2490
43655168
43655467
6.350000e-27
132.0
17
TraesCS5A01G424000
chr6D
89.542
153
15
1
1769
1920
2899005
2899157
2.870000e-45
193.0
18
TraesCS5A01G424000
chr6D
88.889
153
16
1
1769
1920
224523
224675
1.340000e-43
187.0
19
TraesCS5A01G424000
chr4D
89.032
155
15
2
1769
1922
133609196
133609043
1.030000e-44
191.0
20
TraesCS5A01G424000
chr1A
88.961
154
15
1
1769
1920
34890859
34890706
3.720000e-44
189.0
21
TraesCS5A01G424000
chr2B
88.387
155
15
3
1769
1920
84795138
84794984
1.730000e-42
183.0
22
TraesCS5A01G424000
chr2B
81.731
208
32
5
2217
2420
229511024
229511229
4.840000e-38
169.0
23
TraesCS5A01G424000
chr7D
88.079
151
17
1
1769
1918
14255436
14255286
8.040000e-41
178.0
24
TraesCS5A01G424000
chr1D
77.083
336
55
17
2172
2496
423304689
423305013
1.040000e-39
174.0
25
TraesCS5A01G424000
chr2A
81.250
208
33
5
2217
2420
181804992
181805197
2.250000e-36
163.0
26
TraesCS5A01G424000
chr3B
76.292
329
52
21
2177
2496
679529336
679529647
4.870000e-33
152.0
27
TraesCS5A01G424000
chr1B
75.988
329
57
16
2176
2496
572882522
572882836
1.750000e-32
150.0
28
TraesCS5A01G424000
chr7B
77.778
252
41
12
2248
2496
99139382
99139143
1.060000e-29
141.0
29
TraesCS5A01G424000
chr2D
77.132
258
45
10
2243
2496
646351899
646352146
1.360000e-28
137.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5A01G424000
chr5A
609788773
609791597
2824
False
2355.00
4610
100.00000
1
2825
2
chr5A.!!$F1
2824
1
TraesCS5A01G424000
chr5A
609812833
609813968
1135
False
445.85
813
84.38950
919
2056
2
chr5A.!!$F2
1137
2
TraesCS5A01G424000
chr5D
488837675
488838476
801
False
850.00
850
86.42000
941
1719
1
chr5D.!!$F2
778
3
TraesCS5A01G424000
chr5D
488781943
488785107
3164
False
689.00
1308
91.40525
180
2496
4
chr5D.!!$F3
2316
4
TraesCS5A01G424000
chr5B
602065885
602067685
1800
False
1179.00
1218
90.99650
1
1756
2
chr5B.!!$F2
1755
5
TraesCS5A01G424000
chr5B
602137955
602138751
796
False
891.00
891
87.32900
941
1719
1
chr5B.!!$F1
778
6
TraesCS5A01G424000
chr3D
482501344
482502018
674
False
431.00
431
78.94000
1071
1719
1
chr3D.!!$F4
648
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
165
166
0.031515
ACCTCCATCACCGGGTATCA
60.032
55.0
6.32
0.00
0.00
2.15
F
266
267
0.530650
AAGTCACTGACGTGCACTGG
60.531
55.0
16.19
2.33
40.99
4.00
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1811
2859
0.685097
AGCCAGACATTGTACACCGT
59.315
50.0
0.00
0.0
0.0
4.83
R
1969
3017
0.740149
ACGTCACAAGTACACGACCA
59.260
50.0
9.37
0.0
37.0
4.02
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
22
23
1.883678
TCATCATGGAGGCAGGAAGA
58.116
50.000
0.00
0.00
0.00
2.87
34
35
4.716794
AGGCAGGAAGATTGATGAAGATC
58.283
43.478
0.00
0.00
0.00
2.75
35
36
3.819902
GGCAGGAAGATTGATGAAGATCC
59.180
47.826
0.00
0.00
0.00
3.36
37
38
4.396522
CAGGAAGATTGATGAAGATCCCC
58.603
47.826
0.00
0.00
0.00
4.81
62
63
1.215655
GATGGATTTCCGCTCCGACG
61.216
60.000
0.00
0.00
39.43
5.12
92
93
2.760650
TGCCACTCTTCGTGATCTACAT
59.239
45.455
0.00
0.00
46.81
2.29
97
98
4.800993
CACTCTTCGTGATCTACATGAACC
59.199
45.833
0.00
0.00
45.81
3.62
135
136
1.880027
GTAACCTTGGCCACAACTGAG
59.120
52.381
3.88
0.00
32.14
3.35
144
145
2.622942
GGCCACAACTGAGAATTGTTCA
59.377
45.455
0.00
0.00
38.22
3.18
153
154
6.319048
ACTGAGAATTGTTCATACCTCCAT
57.681
37.500
0.00
0.00
0.00
3.41
157
158
5.440610
AGAATTGTTCATACCTCCATCACC
58.559
41.667
0.00
0.00
0.00
4.02
165
166
0.031515
ACCTCCATCACCGGGTATCA
60.032
55.000
6.32
0.00
0.00
2.15
211
212
2.349590
CAGCACACATTGAAGATCGGA
58.650
47.619
0.00
0.00
0.00
4.55
221
222
1.066143
TGAAGATCGGAGTTGGCTTCC
60.066
52.381
0.00
0.00
35.34
3.46
256
257
3.296854
AGACTACCACACAAGTCACTGA
58.703
45.455
5.38
0.00
43.74
3.41
266
267
0.530650
AAGTCACTGACGTGCACTGG
60.531
55.000
16.19
2.33
40.99
4.00
271
272
0.810031
ACTGACGTGCACTGGTGAAC
60.810
55.000
16.19
3.28
35.76
3.18
304
305
4.175337
GCCACCATGCTCCGCCTA
62.175
66.667
0.00
0.00
0.00
3.93
305
306
2.203070
CCACCATGCTCCGCCTAC
60.203
66.667
0.00
0.00
0.00
3.18
333
336
5.875359
TCGAGCTAGATCGCTATCTGATTAA
59.125
40.000
24.94
0.59
42.60
1.40
347
350
1.158434
GATTAAACAACCACCGCCGA
58.842
50.000
0.00
0.00
0.00
5.54
369
372
1.141881
CAGTCGTGCGGGCTATTCT
59.858
57.895
0.00
0.00
0.00
2.40
540
1385
1.734388
GCGCAAAGACCCTGGTTTGT
61.734
55.000
0.30
0.00
36.27
2.83
674
1524
1.191535
TTCCACCTGATCGAACGGAT
58.808
50.000
2.58
0.00
38.35
4.18
730
1616
3.513912
TCACCACGTATCACATCTTTCCT
59.486
43.478
0.00
0.00
0.00
3.36
827
1744
4.147322
GCGGATTGTGCGTGACGG
62.147
66.667
7.25
0.00
32.35
4.79
829
1746
2.024868
CGGATTGTGCGTGACGGAA
61.025
57.895
7.25
0.00
0.00
4.30
830
1747
1.787847
GGATTGTGCGTGACGGAAG
59.212
57.895
7.25
0.00
0.00
3.46
831
1748
1.132640
GATTGTGCGTGACGGAAGC
59.867
57.895
7.25
0.00
0.00
3.86
832
1749
2.548587
GATTGTGCGTGACGGAAGCG
62.549
60.000
7.25
0.00
0.00
4.68
837
1754
3.103911
CGTGACGGAAGCGGTGAC
61.104
66.667
0.00
0.00
0.00
3.67
838
1755
2.028484
GTGACGGAAGCGGTGACA
59.972
61.111
0.00
0.00
0.00
3.58
839
1756
2.028484
TGACGGAAGCGGTGACAC
59.972
61.111
0.00
0.00
0.00
3.67
840
1757
2.028484
GACGGAAGCGGTGACACA
59.972
61.111
8.08
0.00
0.00
3.72
841
1758
2.279918
ACGGAAGCGGTGACACAC
60.280
61.111
8.08
0.00
0.00
3.82
842
1759
3.403057
CGGAAGCGGTGACACACG
61.403
66.667
8.08
9.72
34.83
4.49
843
1760
3.041940
GGAAGCGGTGACACACGG
61.042
66.667
8.08
5.55
37.67
4.94
844
1761
2.028484
GAAGCGGTGACACACGGA
59.972
61.111
8.08
0.00
36.94
4.69
845
1762
2.279918
AAGCGGTGACACACGGAC
60.280
61.111
8.08
5.21
36.94
4.79
846
1763
4.640855
AGCGGTGACACACGGACG
62.641
66.667
8.08
2.36
36.94
4.79
850
1767
4.936823
GTGACACACGGACGCGGT
62.937
66.667
12.47
0.00
0.00
5.68
851
1768
4.210093
TGACACACGGACGCGGTT
62.210
61.111
12.47
0.00
0.00
4.44
852
1769
2.963320
GACACACGGACGCGGTTT
60.963
61.111
12.47
0.00
0.00
3.27
853
1770
3.218209
GACACACGGACGCGGTTTG
62.218
63.158
12.47
4.74
0.00
2.93
854
1771
4.659874
CACACGGACGCGGTTTGC
62.660
66.667
12.47
0.00
41.47
3.68
859
1776
3.723348
GGACGCGGTTTGCCTGAC
61.723
66.667
12.47
0.00
42.08
3.51
860
1777
2.970324
GACGCGGTTTGCCTGACA
60.970
61.111
12.47
0.00
42.08
3.58
861
1778
3.236618
GACGCGGTTTGCCTGACAC
62.237
63.158
12.47
0.00
42.08
3.67
1721
2767
2.126580
GCACGGCGTCGAGTAAGT
60.127
61.111
20.03
0.00
40.11
2.24
1756
2804
3.491267
CGGAGAAGCAATAAGTTCGATCC
59.509
47.826
0.00
0.00
0.00
3.36
1757
2805
4.442706
GGAGAAGCAATAAGTTCGATCCA
58.557
43.478
0.00
0.00
0.00
3.41
1758
2806
4.271291
GGAGAAGCAATAAGTTCGATCCAC
59.729
45.833
0.00
0.00
0.00
4.02
1761
2809
4.471904
AGCAATAAGTTCGATCCACTGA
57.528
40.909
0.00
0.00
0.00
3.41
1764
2812
5.705441
AGCAATAAGTTCGATCCACTGAAAA
59.295
36.000
0.00
0.00
0.00
2.29
1765
2813
6.206634
AGCAATAAGTTCGATCCACTGAAAAA
59.793
34.615
0.00
0.00
0.00
1.94
1797
2845
4.932200
GCGCTATAGCCTATTGAGAATTGT
59.068
41.667
19.00
0.00
37.91
2.71
1798
2846
5.062809
GCGCTATAGCCTATTGAGAATTGTC
59.937
44.000
19.00
0.00
37.91
3.18
1800
2848
6.529829
CGCTATAGCCTATTGAGAATTGTCTC
59.470
42.308
19.00
0.00
43.51
3.36
1801
2849
6.529829
GCTATAGCCTATTGAGAATTGTCTCG
59.470
42.308
14.13
0.00
43.39
4.04
1825
2873
8.137828
CGTTAAATAAAACGGTGTACAATGTC
57.862
34.615
0.00
0.00
46.47
3.06
1827
2875
9.109533
GTTAAATAAAACGGTGTACAATGTCTG
57.890
33.333
0.00
0.00
0.00
3.51
1828
2876
5.873179
ATAAAACGGTGTACAATGTCTGG
57.127
39.130
0.00
0.00
0.00
3.86
1829
2877
1.519408
AACGGTGTACAATGTCTGGC
58.481
50.000
0.00
0.00
0.00
4.85
1830
2878
0.685097
ACGGTGTACAATGTCTGGCT
59.315
50.000
0.00
0.00
0.00
4.75
1831
2879
1.897133
ACGGTGTACAATGTCTGGCTA
59.103
47.619
0.00
0.00
0.00
3.93
1832
2880
2.300723
ACGGTGTACAATGTCTGGCTAA
59.699
45.455
0.00
0.00
0.00
3.09
1833
2881
3.055385
ACGGTGTACAATGTCTGGCTAAT
60.055
43.478
0.00
0.00
0.00
1.73
1834
2882
4.160814
ACGGTGTACAATGTCTGGCTAATA
59.839
41.667
0.00
0.00
0.00
0.98
1835
2883
4.745125
CGGTGTACAATGTCTGGCTAATAG
59.255
45.833
0.00
0.00
0.00
1.73
1837
2885
5.116180
GTGTACAATGTCTGGCTAATAGCA
58.884
41.667
14.76
0.00
44.75
3.49
1838
2886
5.006746
GTGTACAATGTCTGGCTAATAGCAC
59.993
44.000
14.76
4.51
44.75
4.40
1839
2887
3.198068
ACAATGTCTGGCTAATAGCACG
58.802
45.455
14.76
4.26
44.75
5.34
1840
2888
1.871080
ATGTCTGGCTAATAGCACGC
58.129
50.000
14.76
1.97
44.75
5.34
1841
2889
0.824109
TGTCTGGCTAATAGCACGCT
59.176
50.000
14.76
0.00
44.75
5.07
1842
2890
2.028876
TGTCTGGCTAATAGCACGCTA
58.971
47.619
14.76
0.39
44.75
4.26
1843
2891
2.628178
TGTCTGGCTAATAGCACGCTAT
59.372
45.455
14.76
5.72
44.75
2.97
1844
2892
3.824443
TGTCTGGCTAATAGCACGCTATA
59.176
43.478
14.76
1.16
44.75
1.31
1845
2893
4.082733
TGTCTGGCTAATAGCACGCTATAG
60.083
45.833
14.76
10.32
44.75
1.31
1846
2894
3.119459
TCTGGCTAATAGCACGCTATAGC
60.119
47.826
15.09
15.09
44.75
2.97
1878
2926
7.891183
AGCACGCTAATAGTATATTTTGAGG
57.109
36.000
0.00
0.00
0.00
3.86
1879
2927
7.442656
AGCACGCTAATAGTATATTTTGAGGT
58.557
34.615
0.00
0.00
0.00
3.85
1880
2928
7.931948
AGCACGCTAATAGTATATTTTGAGGTT
59.068
33.333
0.00
0.00
0.00
3.50
1881
2929
8.009974
GCACGCTAATAGTATATTTTGAGGTTG
58.990
37.037
0.00
0.00
0.00
3.77
1882
2930
9.256477
CACGCTAATAGTATATTTTGAGGTTGA
57.744
33.333
0.00
0.00
0.00
3.18
1883
2931
9.998106
ACGCTAATAGTATATTTTGAGGTTGAT
57.002
29.630
0.00
0.00
0.00
2.57
1895
2943
8.767478
ATTTTGAGGTTGATGCTATTTTTCTG
57.233
30.769
0.00
0.00
0.00
3.02
1896
2944
6.899393
TTGAGGTTGATGCTATTTTTCTGT
57.101
33.333
0.00
0.00
0.00
3.41
1897
2945
7.994425
TTGAGGTTGATGCTATTTTTCTGTA
57.006
32.000
0.00
0.00
0.00
2.74
1898
2946
7.615582
TGAGGTTGATGCTATTTTTCTGTAG
57.384
36.000
0.00
0.00
0.00
2.74
1899
2947
6.094048
TGAGGTTGATGCTATTTTTCTGTAGC
59.906
38.462
0.00
0.00
42.77
3.58
1900
2948
5.065218
AGGTTGATGCTATTTTTCTGTAGCG
59.935
40.000
0.00
0.00
44.81
4.26
1901
2949
4.536364
TGATGCTATTTTTCTGTAGCGC
57.464
40.909
0.00
0.00
44.81
5.92
1902
2950
3.001228
TGATGCTATTTTTCTGTAGCGCG
59.999
43.478
0.00
0.00
44.81
6.86
1903
2951
1.062002
TGCTATTTTTCTGTAGCGCGC
59.938
47.619
26.66
26.66
44.81
6.86
1904
2952
1.327764
GCTATTTTTCTGTAGCGCGCT
59.672
47.619
38.01
38.01
34.60
5.92
1905
2953
2.538449
GCTATTTTTCTGTAGCGCGCTA
59.462
45.455
35.48
35.48
34.60
4.26
1906
2954
3.184581
GCTATTTTTCTGTAGCGCGCTAT
59.815
43.478
39.99
25.91
34.60
2.97
1907
2955
4.318831
GCTATTTTTCTGTAGCGCGCTATT
60.319
41.667
39.99
20.35
34.60
1.73
1908
2956
4.616181
ATTTTTCTGTAGCGCGCTATTT
57.384
36.364
39.99
19.95
0.00
1.40
1909
2957
4.413495
TTTTTCTGTAGCGCGCTATTTT
57.587
36.364
39.99
19.54
0.00
1.82
1910
2958
4.413495
TTTTCTGTAGCGCGCTATTTTT
57.587
36.364
39.99
18.75
0.00
1.94
1931
2979
3.579335
TCATTGGTTCGATCGTGTGTA
57.421
42.857
15.94
0.00
0.00
2.90
1932
2980
3.247442
TCATTGGTTCGATCGTGTGTAC
58.753
45.455
15.94
6.75
0.00
2.90
1947
2995
5.707411
GTGTGTACGATTATTGGTGGTAC
57.293
43.478
0.00
0.00
35.28
3.34
1950
2998
5.124617
TGTGTACGATTATTGGTGGTACGTA
59.875
40.000
0.00
0.00
37.00
3.57
1969
3017
5.821204
ACGTAGTACTGTAGTTGTTCGTTT
58.179
37.500
5.39
0.00
41.94
3.60
1973
3021
5.045872
AGTACTGTAGTTGTTCGTTTGGTC
58.954
41.667
0.00
0.00
0.00
4.02
1974
3022
2.861935
ACTGTAGTTGTTCGTTTGGTCG
59.138
45.455
0.00
0.00
0.00
4.79
1975
3023
2.861935
CTGTAGTTGTTCGTTTGGTCGT
59.138
45.455
0.00
0.00
0.00
4.34
1976
3024
2.604011
TGTAGTTGTTCGTTTGGTCGTG
59.396
45.455
0.00
0.00
0.00
4.35
1977
3025
1.729284
AGTTGTTCGTTTGGTCGTGT
58.271
45.000
0.00
0.00
0.00
4.49
1978
3026
2.891112
AGTTGTTCGTTTGGTCGTGTA
58.109
42.857
0.00
0.00
0.00
2.90
1979
3027
2.604462
AGTTGTTCGTTTGGTCGTGTAC
59.396
45.455
0.00
0.00
0.00
2.90
1980
3028
2.582728
TGTTCGTTTGGTCGTGTACT
57.417
45.000
0.00
0.00
0.00
2.73
1984
3032
2.195096
TCGTTTGGTCGTGTACTTGTG
58.805
47.619
0.00
0.00
0.00
3.33
1985
3033
2.159268
TCGTTTGGTCGTGTACTTGTGA
60.159
45.455
0.00
0.00
0.00
3.58
1986
3034
2.034339
CGTTTGGTCGTGTACTTGTGAC
60.034
50.000
0.00
0.00
0.00
3.67
2002
3065
1.003972
GTGACGTGTGTGTGTCAATGG
60.004
52.381
0.00
0.00
45.84
3.16
2057
3125
3.559069
CACCTGCCATTCTATTCCATGT
58.441
45.455
0.00
0.00
0.00
3.21
2067
3135
8.800332
GCCATTCTATTCCATGTGAAGAATAAT
58.200
33.333
8.59
3.17
35.20
1.28
2098
3166
6.749036
AGGGTATATTTGGACTTCTACTGG
57.251
41.667
0.00
0.00
0.00
4.00
2109
3177
4.319177
GACTTCTACTGGTGCTGACAATT
58.681
43.478
0.00
0.00
0.00
2.32
2118
3186
2.287788
GGTGCTGACAATTGGTTCTGTG
60.288
50.000
10.83
0.00
0.00
3.66
2133
3201
4.033932
GGTTCTGTGGCATTTTGTTTCAAC
59.966
41.667
0.00
0.00
0.00
3.18
2137
3205
5.879223
TCTGTGGCATTTTGTTTCAACATTT
59.121
32.000
0.00
0.00
38.95
2.32
2161
3229
2.750948
GAGCGCGGGATTACTTTATCA
58.249
47.619
8.83
0.00
0.00
2.15
2211
3279
0.388520
GGATTGGACCGTTTTGCTGC
60.389
55.000
0.00
0.00
0.00
5.25
2212
3280
0.388520
GATTGGACCGTTTTGCTGCC
60.389
55.000
0.00
0.00
0.00
4.85
2213
3281
1.815817
ATTGGACCGTTTTGCTGCCC
61.816
55.000
0.00
0.00
0.00
5.36
2214
3282
2.597510
GGACCGTTTTGCTGCCCT
60.598
61.111
0.00
0.00
0.00
5.19
2215
3283
2.626780
GGACCGTTTTGCTGCCCTC
61.627
63.158
0.00
0.00
0.00
4.30
2216
3284
2.966309
GACCGTTTTGCTGCCCTCG
61.966
63.158
0.00
0.00
0.00
4.63
2217
3285
2.978010
CCGTTTTGCTGCCCTCGT
60.978
61.111
0.00
0.00
0.00
4.18
2218
3286
2.252260
CGTTTTGCTGCCCTCGTG
59.748
61.111
0.00
0.00
0.00
4.35
2450
3518
4.143389
GGAGTTCGTATGTCAAAGTCAACG
60.143
45.833
0.00
0.00
0.00
4.10
2453
3521
5.521010
AGTTCGTATGTCAAAGTCAACGAAA
59.479
36.000
9.36
0.00
46.79
3.46
2456
3524
6.586751
TCGTATGTCAAAGTCAACGAAATTC
58.413
36.000
0.00
0.00
36.53
2.17
2811
3881
5.806654
ATAATGTGGTATTTTGATGGGGC
57.193
39.130
0.00
0.00
0.00
5.80
2812
3882
1.859302
TGTGGTATTTTGATGGGGCC
58.141
50.000
0.00
0.00
0.00
5.80
2813
3883
1.360852
TGTGGTATTTTGATGGGGCCT
59.639
47.619
0.84
0.00
0.00
5.19
2814
3884
2.225496
TGTGGTATTTTGATGGGGCCTT
60.225
45.455
0.84
0.00
0.00
4.35
2815
3885
2.837591
GTGGTATTTTGATGGGGCCTTT
59.162
45.455
0.84
0.00
0.00
3.11
2816
3886
3.103742
TGGTATTTTGATGGGGCCTTTC
58.896
45.455
0.84
0.90
0.00
2.62
2817
3887
2.100749
GGTATTTTGATGGGGCCTTTCG
59.899
50.000
0.84
0.00
0.00
3.46
2818
3888
0.536724
ATTTTGATGGGGCCTTTCGC
59.463
50.000
0.84
0.00
0.00
4.70
2819
3889
1.872197
TTTTGATGGGGCCTTTCGCG
61.872
55.000
0.84
0.00
38.94
5.87
2820
3890
4.794648
TGATGGGGCCTTTCGCGG
62.795
66.667
6.13
0.00
38.94
6.46
2821
3891
4.796495
GATGGGGCCTTTCGCGGT
62.796
66.667
6.13
0.00
38.94
5.68
2822
3892
3.394635
GATGGGGCCTTTCGCGGTA
62.395
63.158
6.13
0.00
38.94
4.02
2823
3893
2.676163
GATGGGGCCTTTCGCGGTAT
62.676
60.000
6.13
0.00
38.94
2.73
2824
3894
2.900337
GGGGCCTTTCGCGGTATG
60.900
66.667
6.13
0.00
38.94
2.39
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
11
12
4.148128
TCTTCATCAATCTTCCTGCCTC
57.852
45.455
0.00
0.00
0.00
4.70
16
17
4.314238
AGGGGATCTTCATCAATCTTCCT
58.686
43.478
0.00
0.00
0.00
3.36
22
23
2.105477
CACGGAGGGGATCTTCATCAAT
59.895
50.000
0.00
0.00
0.00
2.57
54
55
2.049063
AGAGTTGCACGTCGGAGC
60.049
61.111
0.00
0.58
0.00
4.70
92
93
4.825634
CCTAGTATATGGTGTCTCGGTTCA
59.174
45.833
0.00
0.00
0.00
3.18
97
98
6.002704
AGGTTACCTAGTATATGGTGTCTCG
58.997
44.000
0.15
0.00
37.74
4.04
135
136
4.273480
CGGTGATGGAGGTATGAACAATTC
59.727
45.833
0.00
0.00
0.00
2.17
144
145
2.158219
TGATACCCGGTGATGGAGGTAT
60.158
50.000
0.00
0.26
45.98
2.73
153
154
1.610967
TGTGGCTGATACCCGGTGA
60.611
57.895
0.00
0.00
0.00
4.02
157
158
2.203070
GGCTGTGGCTGATACCCG
60.203
66.667
0.00
0.00
38.73
5.28
256
257
1.089481
CAGTGTTCACCAGTGCACGT
61.089
55.000
12.01
0.63
37.67
4.49
266
267
2.542907
CCGGTGCCACAGTGTTCAC
61.543
63.158
14.13
14.13
0.00
3.18
304
305
2.627004
CGATCTAGCTCGACGCGT
59.373
61.111
13.85
13.85
45.59
6.01
305
306
2.793353
GCGATCTAGCTCGACGCG
60.793
66.667
19.55
3.53
45.59
6.01
309
310
3.320673
TCAGATAGCGATCTAGCTCGA
57.679
47.619
19.55
0.00
45.67
4.04
333
336
1.890510
GAAGTCGGCGGTGGTTGTT
60.891
57.895
7.21
0.00
0.00
2.83
347
350
1.605058
ATAGCCCGCACGACTGAAGT
61.605
55.000
0.00
0.00
0.00
3.01
369
372
0.614697
TCTCATCTTCGGAGCCACCA
60.615
55.000
0.00
0.00
38.90
4.17
540
1385
2.807472
CGGTACTACACAACCAGCCAAA
60.807
50.000
0.00
0.00
35.35
3.28
674
1524
4.152402
GCTTTGTTCTTGAAGATGAGCGTA
59.848
41.667
0.00
0.00
0.00
4.42
730
1616
3.781307
CCGGGGCTCGTGGATCAA
61.781
66.667
5.83
0.00
37.11
2.57
781
1669
2.997897
GGGGACGAGTGACTGGCT
60.998
66.667
0.00
0.00
0.00
4.75
787
1675
3.691342
CGCCAAGGGGACGAGTGA
61.691
66.667
0.00
0.00
36.29
3.41
827
1744
2.028484
TCCGTGTGTCACCGCTTC
59.972
61.111
0.00
0.00
0.00
3.86
829
1746
4.640855
CGTCCGTGTGTCACCGCT
62.641
66.667
0.00
0.00
0.00
5.52
833
1750
4.936823
ACCGCGTCCGTGTGTCAC
62.937
66.667
4.92
0.00
0.00
3.67
834
1751
3.719883
AAACCGCGTCCGTGTGTCA
62.720
57.895
4.92
0.00
0.00
3.58
835
1752
2.963320
AAACCGCGTCCGTGTGTC
60.963
61.111
4.92
0.00
0.00
3.67
836
1753
3.266376
CAAACCGCGTCCGTGTGT
61.266
61.111
4.92
0.00
0.00
3.72
837
1754
4.659874
GCAAACCGCGTCCGTGTG
62.660
66.667
4.92
2.18
0.00
3.82
842
1759
3.723348
GTCAGGCAAACCGCGTCC
61.723
66.667
4.92
0.00
43.84
4.79
843
1760
2.970324
TGTCAGGCAAACCGCGTC
60.970
61.111
4.92
0.00
43.84
5.19
844
1761
3.276846
GTGTCAGGCAAACCGCGT
61.277
61.111
4.92
0.00
43.84
6.01
845
1762
4.025401
GGTGTCAGGCAAACCGCG
62.025
66.667
0.00
0.00
43.84
6.46
848
1765
2.617274
GCTCGGTGTCAGGCAAACC
61.617
63.158
0.00
0.00
0.00
3.27
849
1766
2.946762
GCTCGGTGTCAGGCAAAC
59.053
61.111
0.00
0.00
0.00
2.93
850
1767
2.652382
TTCGCTCGGTGTCAGGCAAA
62.652
55.000
0.00
0.00
0.00
3.68
851
1768
3.158537
TTCGCTCGGTGTCAGGCAA
62.159
57.895
0.00
0.00
0.00
4.52
852
1769
3.611674
TTCGCTCGGTGTCAGGCA
61.612
61.111
0.00
0.00
0.00
4.75
853
1770
3.112709
GTTCGCTCGGTGTCAGGC
61.113
66.667
0.00
0.00
0.00
4.85
854
1771
2.742710
TTCGTTCGCTCGGTGTCAGG
62.743
60.000
0.00
0.00
0.00
3.86
855
1772
1.337817
CTTCGTTCGCTCGGTGTCAG
61.338
60.000
0.00
0.00
0.00
3.51
856
1773
1.371267
CTTCGTTCGCTCGGTGTCA
60.371
57.895
0.00
0.00
0.00
3.58
857
1774
2.717809
GCTTCGTTCGCTCGGTGTC
61.718
63.158
0.00
0.00
0.00
3.67
858
1775
2.733593
GCTTCGTTCGCTCGGTGT
60.734
61.111
0.00
0.00
0.00
4.16
859
1776
3.479269
GGCTTCGTTCGCTCGGTG
61.479
66.667
0.00
0.00
0.00
4.94
860
1777
4.736896
GGGCTTCGTTCGCTCGGT
62.737
66.667
0.00
0.00
0.00
4.69
1487
2494
4.771356
CGTCGCCGCCGAAGAAGA
62.771
66.667
0.00
0.00
46.34
2.87
1505
2512
2.646719
CGTCCACGAACCCGAAGA
59.353
61.111
0.00
0.00
43.02
2.87
1733
2779
3.861276
TCGAACTTATTGCTTCTCCGA
57.139
42.857
0.00
0.00
0.00
4.55
1774
2822
4.932200
ACAATTCTCAATAGGCTATAGCGC
59.068
41.667
18.30
11.30
43.26
5.92
1775
2823
6.393990
AGACAATTCTCAATAGGCTATAGCG
58.606
40.000
18.30
4.51
43.26
4.26
1776
2824
7.826260
GAGACAATTCTCAATAGGCTATAGC
57.174
40.000
16.78
16.78
46.84
2.97
1801
2849
9.109533
CAGACATTGTACACCGTTTTATTTAAC
57.890
33.333
0.00
0.00
0.00
2.01
1804
2852
6.674066
CCAGACATTGTACACCGTTTTATTT
58.326
36.000
0.00
0.00
0.00
1.40
1805
2853
5.335348
GCCAGACATTGTACACCGTTTTATT
60.335
40.000
0.00
0.00
0.00
1.40
1806
2854
4.155280
GCCAGACATTGTACACCGTTTTAT
59.845
41.667
0.00
0.00
0.00
1.40
1808
2856
2.292292
GCCAGACATTGTACACCGTTTT
59.708
45.455
0.00
0.00
0.00
2.43
1809
2857
1.877443
GCCAGACATTGTACACCGTTT
59.123
47.619
0.00
0.00
0.00
3.60
1810
2858
1.071699
AGCCAGACATTGTACACCGTT
59.928
47.619
0.00
0.00
0.00
4.44
1811
2859
0.685097
AGCCAGACATTGTACACCGT
59.315
50.000
0.00
0.00
0.00
4.83
1813
2861
4.511826
GCTATTAGCCAGACATTGTACACC
59.488
45.833
4.21
0.00
34.48
4.16
1814
2862
5.006746
GTGCTATTAGCCAGACATTGTACAC
59.993
44.000
13.01
0.00
41.51
2.90
1816
2864
4.209288
CGTGCTATTAGCCAGACATTGTAC
59.791
45.833
13.01
0.11
41.51
2.90
1818
2866
3.198068
CGTGCTATTAGCCAGACATTGT
58.802
45.455
13.01
0.00
41.51
2.71
1820
2868
2.158900
AGCGTGCTATTAGCCAGACATT
60.159
45.455
13.01
0.00
41.51
2.71
1821
2869
1.414181
AGCGTGCTATTAGCCAGACAT
59.586
47.619
13.01
0.00
41.51
3.06
1822
2870
0.824109
AGCGTGCTATTAGCCAGACA
59.176
50.000
13.01
0.00
41.51
3.41
1824
2872
3.119459
GCTATAGCGTGCTATTAGCCAGA
60.119
47.826
18.62
0.00
41.51
3.86
1825
2873
3.182967
GCTATAGCGTGCTATTAGCCAG
58.817
50.000
18.62
11.00
41.51
4.85
1852
2900
9.587772
CCTCAAAATATACTATTAGCGTGCTAT
57.412
33.333
1.86
0.00
0.00
2.97
1853
2901
8.582437
ACCTCAAAATATACTATTAGCGTGCTA
58.418
33.333
0.00
0.00
0.00
3.49
1854
2902
7.442656
ACCTCAAAATATACTATTAGCGTGCT
58.557
34.615
0.00
0.00
0.00
4.40
1855
2903
7.653767
ACCTCAAAATATACTATTAGCGTGC
57.346
36.000
0.00
0.00
0.00
5.34
1856
2904
9.256477
TCAACCTCAAAATATACTATTAGCGTG
57.744
33.333
0.00
0.00
0.00
5.34
1857
2905
9.998106
ATCAACCTCAAAATATACTATTAGCGT
57.002
29.630
0.00
0.00
0.00
5.07
1869
2917
9.859427
CAGAAAAATAGCATCAACCTCAAAATA
57.141
29.630
0.00
0.00
0.00
1.40
1870
2918
8.370182
ACAGAAAAATAGCATCAACCTCAAAAT
58.630
29.630
0.00
0.00
0.00
1.82
1871
2919
7.725251
ACAGAAAAATAGCATCAACCTCAAAA
58.275
30.769
0.00
0.00
0.00
2.44
1872
2920
7.288810
ACAGAAAAATAGCATCAACCTCAAA
57.711
32.000
0.00
0.00
0.00
2.69
1873
2921
6.899393
ACAGAAAAATAGCATCAACCTCAA
57.101
33.333
0.00
0.00
0.00
3.02
1874
2922
6.094048
GCTACAGAAAAATAGCATCAACCTCA
59.906
38.462
0.00
0.00
42.82
3.86
1875
2923
6.490534
GCTACAGAAAAATAGCATCAACCTC
58.509
40.000
0.00
0.00
42.82
3.85
1876
2924
5.065218
CGCTACAGAAAAATAGCATCAACCT
59.935
40.000
4.32
0.00
43.36
3.50
1877
2925
5.266242
CGCTACAGAAAAATAGCATCAACC
58.734
41.667
4.32
0.00
43.36
3.77
1878
2926
4.730521
GCGCTACAGAAAAATAGCATCAAC
59.269
41.667
0.00
0.00
43.36
3.18
1879
2927
4.494035
CGCGCTACAGAAAAATAGCATCAA
60.494
41.667
5.56
0.00
43.36
2.57
1880
2928
3.001228
CGCGCTACAGAAAAATAGCATCA
59.999
43.478
5.56
0.00
43.36
3.07
1881
2929
3.535860
CGCGCTACAGAAAAATAGCATC
58.464
45.455
5.56
0.00
43.36
3.91
1882
2930
2.286418
GCGCGCTACAGAAAAATAGCAT
60.286
45.455
26.67
0.00
43.36
3.79
1883
2931
1.062002
GCGCGCTACAGAAAAATAGCA
59.938
47.619
26.67
0.00
43.36
3.49
1884
2932
1.327764
AGCGCGCTACAGAAAAATAGC
59.672
47.619
35.79
0.00
40.40
2.97
1885
2933
4.974103
ATAGCGCGCTACAGAAAAATAG
57.026
40.909
40.42
0.00
0.00
1.73
1886
2934
5.728351
AAATAGCGCGCTACAGAAAAATA
57.272
34.783
40.42
19.14
0.00
1.40
1887
2935
4.616181
AAATAGCGCGCTACAGAAAAAT
57.384
36.364
40.42
22.12
0.00
1.82
1888
2936
4.413495
AAAATAGCGCGCTACAGAAAAA
57.587
36.364
40.42
20.74
0.00
1.94
1889
2937
4.413495
AAAAATAGCGCGCTACAGAAAA
57.587
36.364
40.42
21.55
0.00
2.29
1907
2955
4.035792
ACACACGATCGAACCAATGAAAAA
59.964
37.500
24.34
0.00
0.00
1.94
1908
2956
3.562141
ACACACGATCGAACCAATGAAAA
59.438
39.130
24.34
0.00
0.00
2.29
1909
2957
3.135225
ACACACGATCGAACCAATGAAA
58.865
40.909
24.34
0.00
0.00
2.69
1910
2958
2.761559
ACACACGATCGAACCAATGAA
58.238
42.857
24.34
0.00
0.00
2.57
1911
2959
2.448926
ACACACGATCGAACCAATGA
57.551
45.000
24.34
0.00
0.00
2.57
1912
2960
3.634730
GTACACACGATCGAACCAATG
57.365
47.619
24.34
10.95
0.00
2.82
1931
2979
4.989279
ACTACGTACCACCAATAATCGT
57.011
40.909
0.00
0.00
0.00
3.73
1932
2980
5.911280
CAGTACTACGTACCACCAATAATCG
59.089
44.000
0.00
0.00
39.58
3.34
1934
2982
6.780457
ACAGTACTACGTACCACCAATAAT
57.220
37.500
0.00
0.00
39.58
1.28
1937
2985
5.256474
ACTACAGTACTACGTACCACCAAT
58.744
41.667
0.00
0.00
39.58
3.16
1938
2986
4.651778
ACTACAGTACTACGTACCACCAA
58.348
43.478
0.00
0.00
39.58
3.67
1943
2991
5.107065
ACGAACAACTACAGTACTACGTACC
60.107
44.000
0.00
0.00
39.58
3.34
1946
2994
5.424121
AACGAACAACTACAGTACTACGT
57.576
39.130
0.00
0.00
0.00
3.57
1947
2995
5.116074
CCAAACGAACAACTACAGTACTACG
59.884
44.000
0.00
0.00
0.00
3.51
1950
2998
5.014808
ACCAAACGAACAACTACAGTACT
57.985
39.130
0.00
0.00
0.00
2.73
1952
3000
4.043750
CGACCAAACGAACAACTACAGTA
58.956
43.478
0.00
0.00
35.09
2.74
1954
3002
2.861935
ACGACCAAACGAACAACTACAG
59.138
45.455
0.00
0.00
37.03
2.74
1955
3003
2.604011
CACGACCAAACGAACAACTACA
59.396
45.455
0.00
0.00
37.03
2.74
1956
3004
2.604462
ACACGACCAAACGAACAACTAC
59.396
45.455
0.00
0.00
37.03
2.73
1957
3005
2.891112
ACACGACCAAACGAACAACTA
58.109
42.857
0.00
0.00
37.03
2.24
1958
3006
1.729284
ACACGACCAAACGAACAACT
58.271
45.000
0.00
0.00
37.03
3.16
1959
3007
2.604462
AGTACACGACCAAACGAACAAC
59.396
45.455
0.00
0.00
37.03
3.32
1960
3008
2.891112
AGTACACGACCAAACGAACAA
58.109
42.857
0.00
0.00
37.03
2.83
1961
3009
2.582728
AGTACACGACCAAACGAACA
57.417
45.000
0.00
0.00
37.03
3.18
1962
3010
2.604462
ACAAGTACACGACCAAACGAAC
59.396
45.455
0.00
0.00
37.03
3.95
1963
3011
2.604011
CACAAGTACACGACCAAACGAA
59.396
45.455
0.00
0.00
37.03
3.85
1965
3013
2.034339
GTCACAAGTACACGACCAAACG
60.034
50.000
0.00
0.00
39.31
3.60
1966
3014
2.034339
CGTCACAAGTACACGACCAAAC
60.034
50.000
0.00
0.00
35.49
2.93
1967
3015
2.195096
CGTCACAAGTACACGACCAAA
58.805
47.619
0.00
0.00
35.49
3.28
1969
3017
0.740149
ACGTCACAAGTACACGACCA
59.260
50.000
9.37
0.00
37.00
4.02
1973
3021
1.254313
CACACACGTCACAAGTACACG
59.746
52.381
0.00
0.00
39.48
4.49
1974
3022
2.028763
CACACACACGTCACAAGTACAC
59.971
50.000
0.00
0.00
0.00
2.90
1975
3023
2.263945
CACACACACGTCACAAGTACA
58.736
47.619
0.00
0.00
0.00
2.90
1976
3024
2.264813
ACACACACACGTCACAAGTAC
58.735
47.619
0.00
0.00
0.00
2.73
1977
3025
2.094649
TGACACACACACGTCACAAGTA
60.095
45.455
0.00
0.00
37.23
2.24
1978
3026
1.337354
TGACACACACACGTCACAAGT
60.337
47.619
0.00
0.00
37.23
3.16
1979
3027
1.355005
TGACACACACACGTCACAAG
58.645
50.000
0.00
0.00
37.23
3.16
1980
3028
1.797025
TTGACACACACACGTCACAA
58.203
45.000
0.00
0.00
41.67
3.33
1984
3032
1.295792
ACCATTGACACACACACGTC
58.704
50.000
0.00
0.00
0.00
4.34
1985
3033
2.159014
ACTACCATTGACACACACACGT
60.159
45.455
0.00
0.00
0.00
4.49
1986
3034
2.475111
GACTACCATTGACACACACACG
59.525
50.000
0.00
0.00
0.00
4.49
2002
3065
1.066071
GCCCCCACTGAAGAAGACTAC
60.066
57.143
0.00
0.00
0.00
2.73
2097
3165
1.956477
ACAGAACCAATTGTCAGCACC
59.044
47.619
4.43
0.00
0.00
5.01
2098
3166
2.287788
CCACAGAACCAATTGTCAGCAC
60.288
50.000
4.43
0.00
0.00
4.40
2109
3177
3.196469
TGAAACAAAATGCCACAGAACCA
59.804
39.130
0.00
0.00
0.00
3.67
2118
3186
5.006165
TCGTCAAATGTTGAAACAAAATGCC
59.994
36.000
0.00
0.00
43.03
4.40
2133
3201
1.705337
AATCCCGCGCTCGTCAAATG
61.705
55.000
5.56
0.00
0.00
2.32
2137
3205
1.940883
AAGTAATCCCGCGCTCGTCA
61.941
55.000
5.56
0.00
0.00
4.35
2181
3249
9.284968
CAAAACGGTCCAATCCTTCTATTATAT
57.715
33.333
0.00
0.00
0.00
0.86
2182
3250
7.227910
GCAAAACGGTCCAATCCTTCTATTATA
59.772
37.037
0.00
0.00
0.00
0.98
2211
3279
1.066454
GAAAACCCAACAACACGAGGG
59.934
52.381
0.00
0.00
46.96
4.30
2212
3280
1.746220
TGAAAACCCAACAACACGAGG
59.254
47.619
0.00
0.00
0.00
4.63
2213
3281
3.708563
ATGAAAACCCAACAACACGAG
57.291
42.857
0.00
0.00
0.00
4.18
2214
3282
4.200874
ACTATGAAAACCCAACAACACGA
58.799
39.130
0.00
0.00
0.00
4.35
2215
3283
4.274950
AGACTATGAAAACCCAACAACACG
59.725
41.667
0.00
0.00
0.00
4.49
2216
3284
5.767816
AGACTATGAAAACCCAACAACAC
57.232
39.130
0.00
0.00
0.00
3.32
2217
3285
8.472007
AAATAGACTATGAAAACCCAACAACA
57.528
30.769
0.00
0.00
0.00
3.33
2218
3286
9.836076
GTAAATAGACTATGAAAACCCAACAAC
57.164
33.333
0.00
0.00
0.00
3.32
2785
3855
8.374743
GCCCCATCAAAATACCACATTATAAAT
58.625
33.333
0.00
0.00
0.00
1.40
2786
3856
7.202047
GGCCCCATCAAAATACCACATTATAAA
60.202
37.037
0.00
0.00
0.00
1.40
2787
3857
6.268847
GGCCCCATCAAAATACCACATTATAA
59.731
38.462
0.00
0.00
0.00
0.98
2788
3858
5.777732
GGCCCCATCAAAATACCACATTATA
59.222
40.000
0.00
0.00
0.00
0.98
2789
3859
4.592778
GGCCCCATCAAAATACCACATTAT
59.407
41.667
0.00
0.00
0.00
1.28
2790
3860
3.964031
GGCCCCATCAAAATACCACATTA
59.036
43.478
0.00
0.00
0.00
1.90
2791
3861
2.771372
GGCCCCATCAAAATACCACATT
59.229
45.455
0.00
0.00
0.00
2.71
2792
3862
2.023113
AGGCCCCATCAAAATACCACAT
60.023
45.455
0.00
0.00
0.00
3.21
2793
3863
1.360852
AGGCCCCATCAAAATACCACA
59.639
47.619
0.00
0.00
0.00
4.17
2794
3864
2.159179
AGGCCCCATCAAAATACCAC
57.841
50.000
0.00
0.00
0.00
4.16
2795
3865
2.938428
AAGGCCCCATCAAAATACCA
57.062
45.000
0.00
0.00
0.00
3.25
2796
3866
2.100749
CGAAAGGCCCCATCAAAATACC
59.899
50.000
0.00
0.00
0.00
2.73
2797
3867
2.481276
GCGAAAGGCCCCATCAAAATAC
60.481
50.000
0.00
0.00
34.80
1.89
2798
3868
1.754226
GCGAAAGGCCCCATCAAAATA
59.246
47.619
0.00
0.00
34.80
1.40
2799
3869
0.536724
GCGAAAGGCCCCATCAAAAT
59.463
50.000
0.00
0.00
34.80
1.82
2800
3870
1.872197
CGCGAAAGGCCCCATCAAAA
61.872
55.000
0.00
0.00
38.94
2.44
2801
3871
2.339556
CGCGAAAGGCCCCATCAAA
61.340
57.895
0.00
0.00
38.94
2.69
2802
3872
2.749839
CGCGAAAGGCCCCATCAA
60.750
61.111
0.00
0.00
38.94
2.57
2803
3873
4.794648
CCGCGAAAGGCCCCATCA
62.795
66.667
8.23
0.00
38.94
3.07
2804
3874
2.676163
ATACCGCGAAAGGCCCCATC
62.676
60.000
8.23
0.00
38.94
3.51
2805
3875
2.752807
ATACCGCGAAAGGCCCCAT
61.753
57.895
8.23
0.00
38.94
4.00
2806
3876
3.404438
ATACCGCGAAAGGCCCCA
61.404
61.111
8.23
0.00
38.94
4.96
2807
3877
2.900337
CATACCGCGAAAGGCCCC
60.900
66.667
8.23
0.00
38.94
5.80
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.