Multiple sequence alignment - TraesCS5A01G424000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G424000 chr5A 100.000 2496 0 0 1 2496 609788773 609791268 0.000000e+00 4610.0
1 TraesCS5A01G424000 chr5A 84.688 849 93 22 919 1738 609812833 609813673 0.000000e+00 813.0
2 TraesCS5A01G424000 chr5A 100.000 54 0 0 2772 2825 609791544 609791597 1.790000e-17 100.0
3 TraesCS5A01G424000 chr5A 84.091 88 6 5 1977 2056 609813881 609813968 8.390000e-11 78.7
4 TraesCS5A01G424000 chr5D 88.614 1133 53 35 672 1756 488783306 488784410 0.000000e+00 1308.0
5 TraesCS5A01G424000 chr5D 86.420 810 71 22 941 1719 488837675 488838476 0.000000e+00 850.0
6 TraesCS5A01G424000 chr5D 92.188 512 23 6 1988 2496 488784610 488785107 0.000000e+00 708.0
7 TraesCS5A01G424000 chr5D 91.844 282 23 0 180 461 488781943 488782224 7.340000e-106 394.0
8 TraesCS5A01G424000 chr5D 92.975 242 9 4 450 686 488783046 488783284 2.080000e-91 346.0
9 TraesCS5A01G424000 chr5D 89.610 154 15 1 1769 1921 434565361 434565514 7.990000e-46 195.0
10 TraesCS5A01G424000 chr5B 92.457 875 31 11 915 1756 602066813 602067685 0.000000e+00 1218.0
11 TraesCS5A01G424000 chr5B 89.536 927 59 22 1 915 602065885 602066785 0.000000e+00 1140.0
12 TraesCS5A01G424000 chr5B 87.329 805 68 19 941 1719 602137955 602138751 0.000000e+00 891.0
13 TraesCS5A01G424000 chr3D 78.940 679 109 20 1071 1719 482501344 482502018 5.590000e-117 431.0
14 TraesCS5A01G424000 chr3D 90.260 154 14 1 1765 1917 312750020 312750173 1.720000e-47 200.0
15 TraesCS5A01G424000 chr3D 89.333 150 15 1 1769 1917 61601047 61601196 1.340000e-43 187.0
16 TraesCS5A01G424000 chr3D 75.563 311 53 17 2192 2490 43655168 43655467 6.350000e-27 132.0
17 TraesCS5A01G424000 chr6D 89.542 153 15 1 1769 1920 2899005 2899157 2.870000e-45 193.0
18 TraesCS5A01G424000 chr6D 88.889 153 16 1 1769 1920 224523 224675 1.340000e-43 187.0
19 TraesCS5A01G424000 chr4D 89.032 155 15 2 1769 1922 133609196 133609043 1.030000e-44 191.0
20 TraesCS5A01G424000 chr1A 88.961 154 15 1 1769 1920 34890859 34890706 3.720000e-44 189.0
21 TraesCS5A01G424000 chr2B 88.387 155 15 3 1769 1920 84795138 84794984 1.730000e-42 183.0
22 TraesCS5A01G424000 chr2B 81.731 208 32 5 2217 2420 229511024 229511229 4.840000e-38 169.0
23 TraesCS5A01G424000 chr7D 88.079 151 17 1 1769 1918 14255436 14255286 8.040000e-41 178.0
24 TraesCS5A01G424000 chr1D 77.083 336 55 17 2172 2496 423304689 423305013 1.040000e-39 174.0
25 TraesCS5A01G424000 chr2A 81.250 208 33 5 2217 2420 181804992 181805197 2.250000e-36 163.0
26 TraesCS5A01G424000 chr3B 76.292 329 52 21 2177 2496 679529336 679529647 4.870000e-33 152.0
27 TraesCS5A01G424000 chr1B 75.988 329 57 16 2176 2496 572882522 572882836 1.750000e-32 150.0
28 TraesCS5A01G424000 chr7B 77.778 252 41 12 2248 2496 99139382 99139143 1.060000e-29 141.0
29 TraesCS5A01G424000 chr2D 77.132 258 45 10 2243 2496 646351899 646352146 1.360000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G424000 chr5A 609788773 609791597 2824 False 2355.00 4610 100.00000 1 2825 2 chr5A.!!$F1 2824
1 TraesCS5A01G424000 chr5A 609812833 609813968 1135 False 445.85 813 84.38950 919 2056 2 chr5A.!!$F2 1137
2 TraesCS5A01G424000 chr5D 488837675 488838476 801 False 850.00 850 86.42000 941 1719 1 chr5D.!!$F2 778
3 TraesCS5A01G424000 chr5D 488781943 488785107 3164 False 689.00 1308 91.40525 180 2496 4 chr5D.!!$F3 2316
4 TraesCS5A01G424000 chr5B 602065885 602067685 1800 False 1179.00 1218 90.99650 1 1756 2 chr5B.!!$F2 1755
5 TraesCS5A01G424000 chr5B 602137955 602138751 796 False 891.00 891 87.32900 941 1719 1 chr5B.!!$F1 778
6 TraesCS5A01G424000 chr3D 482501344 482502018 674 False 431.00 431 78.94000 1071 1719 1 chr3D.!!$F4 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.031515 ACCTCCATCACCGGGTATCA 60.032 55.0 6.32 0.00 0.00 2.15 F
266 267 0.530650 AAGTCACTGACGTGCACTGG 60.531 55.0 16.19 2.33 40.99 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 2859 0.685097 AGCCAGACATTGTACACCGT 59.315 50.0 0.00 0.0 0.0 4.83 R
1969 3017 0.740149 ACGTCACAAGTACACGACCA 59.260 50.0 9.37 0.0 37.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.883678 TCATCATGGAGGCAGGAAGA 58.116 50.000 0.00 0.00 0.00 2.87
34 35 4.716794 AGGCAGGAAGATTGATGAAGATC 58.283 43.478 0.00 0.00 0.00 2.75
35 36 3.819902 GGCAGGAAGATTGATGAAGATCC 59.180 47.826 0.00 0.00 0.00 3.36
37 38 4.396522 CAGGAAGATTGATGAAGATCCCC 58.603 47.826 0.00 0.00 0.00 4.81
62 63 1.215655 GATGGATTTCCGCTCCGACG 61.216 60.000 0.00 0.00 39.43 5.12
92 93 2.760650 TGCCACTCTTCGTGATCTACAT 59.239 45.455 0.00 0.00 46.81 2.29
97 98 4.800993 CACTCTTCGTGATCTACATGAACC 59.199 45.833 0.00 0.00 45.81 3.62
135 136 1.880027 GTAACCTTGGCCACAACTGAG 59.120 52.381 3.88 0.00 32.14 3.35
144 145 2.622942 GGCCACAACTGAGAATTGTTCA 59.377 45.455 0.00 0.00 38.22 3.18
153 154 6.319048 ACTGAGAATTGTTCATACCTCCAT 57.681 37.500 0.00 0.00 0.00 3.41
157 158 5.440610 AGAATTGTTCATACCTCCATCACC 58.559 41.667 0.00 0.00 0.00 4.02
165 166 0.031515 ACCTCCATCACCGGGTATCA 60.032 55.000 6.32 0.00 0.00 2.15
211 212 2.349590 CAGCACACATTGAAGATCGGA 58.650 47.619 0.00 0.00 0.00 4.55
221 222 1.066143 TGAAGATCGGAGTTGGCTTCC 60.066 52.381 0.00 0.00 35.34 3.46
256 257 3.296854 AGACTACCACACAAGTCACTGA 58.703 45.455 5.38 0.00 43.74 3.41
266 267 0.530650 AAGTCACTGACGTGCACTGG 60.531 55.000 16.19 2.33 40.99 4.00
271 272 0.810031 ACTGACGTGCACTGGTGAAC 60.810 55.000 16.19 3.28 35.76 3.18
304 305 4.175337 GCCACCATGCTCCGCCTA 62.175 66.667 0.00 0.00 0.00 3.93
305 306 2.203070 CCACCATGCTCCGCCTAC 60.203 66.667 0.00 0.00 0.00 3.18
333 336 5.875359 TCGAGCTAGATCGCTATCTGATTAA 59.125 40.000 24.94 0.59 42.60 1.40
347 350 1.158434 GATTAAACAACCACCGCCGA 58.842 50.000 0.00 0.00 0.00 5.54
369 372 1.141881 CAGTCGTGCGGGCTATTCT 59.858 57.895 0.00 0.00 0.00 2.40
540 1385 1.734388 GCGCAAAGACCCTGGTTTGT 61.734 55.000 0.30 0.00 36.27 2.83
674 1524 1.191535 TTCCACCTGATCGAACGGAT 58.808 50.000 2.58 0.00 38.35 4.18
730 1616 3.513912 TCACCACGTATCACATCTTTCCT 59.486 43.478 0.00 0.00 0.00 3.36
827 1744 4.147322 GCGGATTGTGCGTGACGG 62.147 66.667 7.25 0.00 32.35 4.79
829 1746 2.024868 CGGATTGTGCGTGACGGAA 61.025 57.895 7.25 0.00 0.00 4.30
830 1747 1.787847 GGATTGTGCGTGACGGAAG 59.212 57.895 7.25 0.00 0.00 3.46
831 1748 1.132640 GATTGTGCGTGACGGAAGC 59.867 57.895 7.25 0.00 0.00 3.86
832 1749 2.548587 GATTGTGCGTGACGGAAGCG 62.549 60.000 7.25 0.00 0.00 4.68
837 1754 3.103911 CGTGACGGAAGCGGTGAC 61.104 66.667 0.00 0.00 0.00 3.67
838 1755 2.028484 GTGACGGAAGCGGTGACA 59.972 61.111 0.00 0.00 0.00 3.58
839 1756 2.028484 TGACGGAAGCGGTGACAC 59.972 61.111 0.00 0.00 0.00 3.67
840 1757 2.028484 GACGGAAGCGGTGACACA 59.972 61.111 8.08 0.00 0.00 3.72
841 1758 2.279918 ACGGAAGCGGTGACACAC 60.280 61.111 8.08 0.00 0.00 3.82
842 1759 3.403057 CGGAAGCGGTGACACACG 61.403 66.667 8.08 9.72 34.83 4.49
843 1760 3.041940 GGAAGCGGTGACACACGG 61.042 66.667 8.08 5.55 37.67 4.94
844 1761 2.028484 GAAGCGGTGACACACGGA 59.972 61.111 8.08 0.00 36.94 4.69
845 1762 2.279918 AAGCGGTGACACACGGAC 60.280 61.111 8.08 5.21 36.94 4.79
846 1763 4.640855 AGCGGTGACACACGGACG 62.641 66.667 8.08 2.36 36.94 4.79
850 1767 4.936823 GTGACACACGGACGCGGT 62.937 66.667 12.47 0.00 0.00 5.68
851 1768 4.210093 TGACACACGGACGCGGTT 62.210 61.111 12.47 0.00 0.00 4.44
852 1769 2.963320 GACACACGGACGCGGTTT 60.963 61.111 12.47 0.00 0.00 3.27
853 1770 3.218209 GACACACGGACGCGGTTTG 62.218 63.158 12.47 4.74 0.00 2.93
854 1771 4.659874 CACACGGACGCGGTTTGC 62.660 66.667 12.47 0.00 41.47 3.68
859 1776 3.723348 GGACGCGGTTTGCCTGAC 61.723 66.667 12.47 0.00 42.08 3.51
860 1777 2.970324 GACGCGGTTTGCCTGACA 60.970 61.111 12.47 0.00 42.08 3.58
861 1778 3.236618 GACGCGGTTTGCCTGACAC 62.237 63.158 12.47 0.00 42.08 3.67
1721 2767 2.126580 GCACGGCGTCGAGTAAGT 60.127 61.111 20.03 0.00 40.11 2.24
1756 2804 3.491267 CGGAGAAGCAATAAGTTCGATCC 59.509 47.826 0.00 0.00 0.00 3.36
1757 2805 4.442706 GGAGAAGCAATAAGTTCGATCCA 58.557 43.478 0.00 0.00 0.00 3.41
1758 2806 4.271291 GGAGAAGCAATAAGTTCGATCCAC 59.729 45.833 0.00 0.00 0.00 4.02
1761 2809 4.471904 AGCAATAAGTTCGATCCACTGA 57.528 40.909 0.00 0.00 0.00 3.41
1764 2812 5.705441 AGCAATAAGTTCGATCCACTGAAAA 59.295 36.000 0.00 0.00 0.00 2.29
1765 2813 6.206634 AGCAATAAGTTCGATCCACTGAAAAA 59.793 34.615 0.00 0.00 0.00 1.94
1797 2845 4.932200 GCGCTATAGCCTATTGAGAATTGT 59.068 41.667 19.00 0.00 37.91 2.71
1798 2846 5.062809 GCGCTATAGCCTATTGAGAATTGTC 59.937 44.000 19.00 0.00 37.91 3.18
1800 2848 6.529829 CGCTATAGCCTATTGAGAATTGTCTC 59.470 42.308 19.00 0.00 43.51 3.36
1801 2849 6.529829 GCTATAGCCTATTGAGAATTGTCTCG 59.470 42.308 14.13 0.00 43.39 4.04
1825 2873 8.137828 CGTTAAATAAAACGGTGTACAATGTC 57.862 34.615 0.00 0.00 46.47 3.06
1827 2875 9.109533 GTTAAATAAAACGGTGTACAATGTCTG 57.890 33.333 0.00 0.00 0.00 3.51
1828 2876 5.873179 ATAAAACGGTGTACAATGTCTGG 57.127 39.130 0.00 0.00 0.00 3.86
1829 2877 1.519408 AACGGTGTACAATGTCTGGC 58.481 50.000 0.00 0.00 0.00 4.85
1830 2878 0.685097 ACGGTGTACAATGTCTGGCT 59.315 50.000 0.00 0.00 0.00 4.75
1831 2879 1.897133 ACGGTGTACAATGTCTGGCTA 59.103 47.619 0.00 0.00 0.00 3.93
1832 2880 2.300723 ACGGTGTACAATGTCTGGCTAA 59.699 45.455 0.00 0.00 0.00 3.09
1833 2881 3.055385 ACGGTGTACAATGTCTGGCTAAT 60.055 43.478 0.00 0.00 0.00 1.73
1834 2882 4.160814 ACGGTGTACAATGTCTGGCTAATA 59.839 41.667 0.00 0.00 0.00 0.98
1835 2883 4.745125 CGGTGTACAATGTCTGGCTAATAG 59.255 45.833 0.00 0.00 0.00 1.73
1837 2885 5.116180 GTGTACAATGTCTGGCTAATAGCA 58.884 41.667 14.76 0.00 44.75 3.49
1838 2886 5.006746 GTGTACAATGTCTGGCTAATAGCAC 59.993 44.000 14.76 4.51 44.75 4.40
1839 2887 3.198068 ACAATGTCTGGCTAATAGCACG 58.802 45.455 14.76 4.26 44.75 5.34
1840 2888 1.871080 ATGTCTGGCTAATAGCACGC 58.129 50.000 14.76 1.97 44.75 5.34
1841 2889 0.824109 TGTCTGGCTAATAGCACGCT 59.176 50.000 14.76 0.00 44.75 5.07
1842 2890 2.028876 TGTCTGGCTAATAGCACGCTA 58.971 47.619 14.76 0.39 44.75 4.26
1843 2891 2.628178 TGTCTGGCTAATAGCACGCTAT 59.372 45.455 14.76 5.72 44.75 2.97
1844 2892 3.824443 TGTCTGGCTAATAGCACGCTATA 59.176 43.478 14.76 1.16 44.75 1.31
1845 2893 4.082733 TGTCTGGCTAATAGCACGCTATAG 60.083 45.833 14.76 10.32 44.75 1.31
1846 2894 3.119459 TCTGGCTAATAGCACGCTATAGC 60.119 47.826 15.09 15.09 44.75 2.97
1878 2926 7.891183 AGCACGCTAATAGTATATTTTGAGG 57.109 36.000 0.00 0.00 0.00 3.86
1879 2927 7.442656 AGCACGCTAATAGTATATTTTGAGGT 58.557 34.615 0.00 0.00 0.00 3.85
1880 2928 7.931948 AGCACGCTAATAGTATATTTTGAGGTT 59.068 33.333 0.00 0.00 0.00 3.50
1881 2929 8.009974 GCACGCTAATAGTATATTTTGAGGTTG 58.990 37.037 0.00 0.00 0.00 3.77
1882 2930 9.256477 CACGCTAATAGTATATTTTGAGGTTGA 57.744 33.333 0.00 0.00 0.00 3.18
1883 2931 9.998106 ACGCTAATAGTATATTTTGAGGTTGAT 57.002 29.630 0.00 0.00 0.00 2.57
1895 2943 8.767478 ATTTTGAGGTTGATGCTATTTTTCTG 57.233 30.769 0.00 0.00 0.00 3.02
1896 2944 6.899393 TTGAGGTTGATGCTATTTTTCTGT 57.101 33.333 0.00 0.00 0.00 3.41
1897 2945 7.994425 TTGAGGTTGATGCTATTTTTCTGTA 57.006 32.000 0.00 0.00 0.00 2.74
1898 2946 7.615582 TGAGGTTGATGCTATTTTTCTGTAG 57.384 36.000 0.00 0.00 0.00 2.74
1899 2947 6.094048 TGAGGTTGATGCTATTTTTCTGTAGC 59.906 38.462 0.00 0.00 42.77 3.58
1900 2948 5.065218 AGGTTGATGCTATTTTTCTGTAGCG 59.935 40.000 0.00 0.00 44.81 4.26
1901 2949 4.536364 TGATGCTATTTTTCTGTAGCGC 57.464 40.909 0.00 0.00 44.81 5.92
1902 2950 3.001228 TGATGCTATTTTTCTGTAGCGCG 59.999 43.478 0.00 0.00 44.81 6.86
1903 2951 1.062002 TGCTATTTTTCTGTAGCGCGC 59.938 47.619 26.66 26.66 44.81 6.86
1904 2952 1.327764 GCTATTTTTCTGTAGCGCGCT 59.672 47.619 38.01 38.01 34.60 5.92
1905 2953 2.538449 GCTATTTTTCTGTAGCGCGCTA 59.462 45.455 35.48 35.48 34.60 4.26
1906 2954 3.184581 GCTATTTTTCTGTAGCGCGCTAT 59.815 43.478 39.99 25.91 34.60 2.97
1907 2955 4.318831 GCTATTTTTCTGTAGCGCGCTATT 60.319 41.667 39.99 20.35 34.60 1.73
1908 2956 4.616181 ATTTTTCTGTAGCGCGCTATTT 57.384 36.364 39.99 19.95 0.00 1.40
1909 2957 4.413495 TTTTTCTGTAGCGCGCTATTTT 57.587 36.364 39.99 19.54 0.00 1.82
1910 2958 4.413495 TTTTCTGTAGCGCGCTATTTTT 57.587 36.364 39.99 18.75 0.00 1.94
1931 2979 3.579335 TCATTGGTTCGATCGTGTGTA 57.421 42.857 15.94 0.00 0.00 2.90
1932 2980 3.247442 TCATTGGTTCGATCGTGTGTAC 58.753 45.455 15.94 6.75 0.00 2.90
1947 2995 5.707411 GTGTGTACGATTATTGGTGGTAC 57.293 43.478 0.00 0.00 35.28 3.34
1950 2998 5.124617 TGTGTACGATTATTGGTGGTACGTA 59.875 40.000 0.00 0.00 37.00 3.57
1969 3017 5.821204 ACGTAGTACTGTAGTTGTTCGTTT 58.179 37.500 5.39 0.00 41.94 3.60
1973 3021 5.045872 AGTACTGTAGTTGTTCGTTTGGTC 58.954 41.667 0.00 0.00 0.00 4.02
1974 3022 2.861935 ACTGTAGTTGTTCGTTTGGTCG 59.138 45.455 0.00 0.00 0.00 4.79
1975 3023 2.861935 CTGTAGTTGTTCGTTTGGTCGT 59.138 45.455 0.00 0.00 0.00 4.34
1976 3024 2.604011 TGTAGTTGTTCGTTTGGTCGTG 59.396 45.455 0.00 0.00 0.00 4.35
1977 3025 1.729284 AGTTGTTCGTTTGGTCGTGT 58.271 45.000 0.00 0.00 0.00 4.49
1978 3026 2.891112 AGTTGTTCGTTTGGTCGTGTA 58.109 42.857 0.00 0.00 0.00 2.90
1979 3027 2.604462 AGTTGTTCGTTTGGTCGTGTAC 59.396 45.455 0.00 0.00 0.00 2.90
1980 3028 2.582728 TGTTCGTTTGGTCGTGTACT 57.417 45.000 0.00 0.00 0.00 2.73
1984 3032 2.195096 TCGTTTGGTCGTGTACTTGTG 58.805 47.619 0.00 0.00 0.00 3.33
1985 3033 2.159268 TCGTTTGGTCGTGTACTTGTGA 60.159 45.455 0.00 0.00 0.00 3.58
1986 3034 2.034339 CGTTTGGTCGTGTACTTGTGAC 60.034 50.000 0.00 0.00 0.00 3.67
2002 3065 1.003972 GTGACGTGTGTGTGTCAATGG 60.004 52.381 0.00 0.00 45.84 3.16
2057 3125 3.559069 CACCTGCCATTCTATTCCATGT 58.441 45.455 0.00 0.00 0.00 3.21
2067 3135 8.800332 GCCATTCTATTCCATGTGAAGAATAAT 58.200 33.333 8.59 3.17 35.20 1.28
2098 3166 6.749036 AGGGTATATTTGGACTTCTACTGG 57.251 41.667 0.00 0.00 0.00 4.00
2109 3177 4.319177 GACTTCTACTGGTGCTGACAATT 58.681 43.478 0.00 0.00 0.00 2.32
2118 3186 2.287788 GGTGCTGACAATTGGTTCTGTG 60.288 50.000 10.83 0.00 0.00 3.66
2133 3201 4.033932 GGTTCTGTGGCATTTTGTTTCAAC 59.966 41.667 0.00 0.00 0.00 3.18
2137 3205 5.879223 TCTGTGGCATTTTGTTTCAACATTT 59.121 32.000 0.00 0.00 38.95 2.32
2161 3229 2.750948 GAGCGCGGGATTACTTTATCA 58.249 47.619 8.83 0.00 0.00 2.15
2211 3279 0.388520 GGATTGGACCGTTTTGCTGC 60.389 55.000 0.00 0.00 0.00 5.25
2212 3280 0.388520 GATTGGACCGTTTTGCTGCC 60.389 55.000 0.00 0.00 0.00 4.85
2213 3281 1.815817 ATTGGACCGTTTTGCTGCCC 61.816 55.000 0.00 0.00 0.00 5.36
2214 3282 2.597510 GGACCGTTTTGCTGCCCT 60.598 61.111 0.00 0.00 0.00 5.19
2215 3283 2.626780 GGACCGTTTTGCTGCCCTC 61.627 63.158 0.00 0.00 0.00 4.30
2216 3284 2.966309 GACCGTTTTGCTGCCCTCG 61.966 63.158 0.00 0.00 0.00 4.63
2217 3285 2.978010 CCGTTTTGCTGCCCTCGT 60.978 61.111 0.00 0.00 0.00 4.18
2218 3286 2.252260 CGTTTTGCTGCCCTCGTG 59.748 61.111 0.00 0.00 0.00 4.35
2450 3518 4.143389 GGAGTTCGTATGTCAAAGTCAACG 60.143 45.833 0.00 0.00 0.00 4.10
2453 3521 5.521010 AGTTCGTATGTCAAAGTCAACGAAA 59.479 36.000 9.36 0.00 46.79 3.46
2456 3524 6.586751 TCGTATGTCAAAGTCAACGAAATTC 58.413 36.000 0.00 0.00 36.53 2.17
2811 3881 5.806654 ATAATGTGGTATTTTGATGGGGC 57.193 39.130 0.00 0.00 0.00 5.80
2812 3882 1.859302 TGTGGTATTTTGATGGGGCC 58.141 50.000 0.00 0.00 0.00 5.80
2813 3883 1.360852 TGTGGTATTTTGATGGGGCCT 59.639 47.619 0.84 0.00 0.00 5.19
2814 3884 2.225496 TGTGGTATTTTGATGGGGCCTT 60.225 45.455 0.84 0.00 0.00 4.35
2815 3885 2.837591 GTGGTATTTTGATGGGGCCTTT 59.162 45.455 0.84 0.00 0.00 3.11
2816 3886 3.103742 TGGTATTTTGATGGGGCCTTTC 58.896 45.455 0.84 0.90 0.00 2.62
2817 3887 2.100749 GGTATTTTGATGGGGCCTTTCG 59.899 50.000 0.84 0.00 0.00 3.46
2818 3888 0.536724 ATTTTGATGGGGCCTTTCGC 59.463 50.000 0.84 0.00 0.00 4.70
2819 3889 1.872197 TTTTGATGGGGCCTTTCGCG 61.872 55.000 0.84 0.00 38.94 5.87
2820 3890 4.794648 TGATGGGGCCTTTCGCGG 62.795 66.667 6.13 0.00 38.94 6.46
2821 3891 4.796495 GATGGGGCCTTTCGCGGT 62.796 66.667 6.13 0.00 38.94 5.68
2822 3892 3.394635 GATGGGGCCTTTCGCGGTA 62.395 63.158 6.13 0.00 38.94 4.02
2823 3893 2.676163 GATGGGGCCTTTCGCGGTAT 62.676 60.000 6.13 0.00 38.94 2.73
2824 3894 2.900337 GGGGCCTTTCGCGGTATG 60.900 66.667 6.13 0.00 38.94 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.148128 TCTTCATCAATCTTCCTGCCTC 57.852 45.455 0.00 0.00 0.00 4.70
16 17 4.314238 AGGGGATCTTCATCAATCTTCCT 58.686 43.478 0.00 0.00 0.00 3.36
22 23 2.105477 CACGGAGGGGATCTTCATCAAT 59.895 50.000 0.00 0.00 0.00 2.57
54 55 2.049063 AGAGTTGCACGTCGGAGC 60.049 61.111 0.00 0.58 0.00 4.70
92 93 4.825634 CCTAGTATATGGTGTCTCGGTTCA 59.174 45.833 0.00 0.00 0.00 3.18
97 98 6.002704 AGGTTACCTAGTATATGGTGTCTCG 58.997 44.000 0.15 0.00 37.74 4.04
135 136 4.273480 CGGTGATGGAGGTATGAACAATTC 59.727 45.833 0.00 0.00 0.00 2.17
144 145 2.158219 TGATACCCGGTGATGGAGGTAT 60.158 50.000 0.00 0.26 45.98 2.73
153 154 1.610967 TGTGGCTGATACCCGGTGA 60.611 57.895 0.00 0.00 0.00 4.02
157 158 2.203070 GGCTGTGGCTGATACCCG 60.203 66.667 0.00 0.00 38.73 5.28
256 257 1.089481 CAGTGTTCACCAGTGCACGT 61.089 55.000 12.01 0.63 37.67 4.49
266 267 2.542907 CCGGTGCCACAGTGTTCAC 61.543 63.158 14.13 14.13 0.00 3.18
304 305 2.627004 CGATCTAGCTCGACGCGT 59.373 61.111 13.85 13.85 45.59 6.01
305 306 2.793353 GCGATCTAGCTCGACGCG 60.793 66.667 19.55 3.53 45.59 6.01
309 310 3.320673 TCAGATAGCGATCTAGCTCGA 57.679 47.619 19.55 0.00 45.67 4.04
333 336 1.890510 GAAGTCGGCGGTGGTTGTT 60.891 57.895 7.21 0.00 0.00 2.83
347 350 1.605058 ATAGCCCGCACGACTGAAGT 61.605 55.000 0.00 0.00 0.00 3.01
369 372 0.614697 TCTCATCTTCGGAGCCACCA 60.615 55.000 0.00 0.00 38.90 4.17
540 1385 2.807472 CGGTACTACACAACCAGCCAAA 60.807 50.000 0.00 0.00 35.35 3.28
674 1524 4.152402 GCTTTGTTCTTGAAGATGAGCGTA 59.848 41.667 0.00 0.00 0.00 4.42
730 1616 3.781307 CCGGGGCTCGTGGATCAA 61.781 66.667 5.83 0.00 37.11 2.57
781 1669 2.997897 GGGGACGAGTGACTGGCT 60.998 66.667 0.00 0.00 0.00 4.75
787 1675 3.691342 CGCCAAGGGGACGAGTGA 61.691 66.667 0.00 0.00 36.29 3.41
827 1744 2.028484 TCCGTGTGTCACCGCTTC 59.972 61.111 0.00 0.00 0.00 3.86
829 1746 4.640855 CGTCCGTGTGTCACCGCT 62.641 66.667 0.00 0.00 0.00 5.52
833 1750 4.936823 ACCGCGTCCGTGTGTCAC 62.937 66.667 4.92 0.00 0.00 3.67
834 1751 3.719883 AAACCGCGTCCGTGTGTCA 62.720 57.895 4.92 0.00 0.00 3.58
835 1752 2.963320 AAACCGCGTCCGTGTGTC 60.963 61.111 4.92 0.00 0.00 3.67
836 1753 3.266376 CAAACCGCGTCCGTGTGT 61.266 61.111 4.92 0.00 0.00 3.72
837 1754 4.659874 GCAAACCGCGTCCGTGTG 62.660 66.667 4.92 2.18 0.00 3.82
842 1759 3.723348 GTCAGGCAAACCGCGTCC 61.723 66.667 4.92 0.00 43.84 4.79
843 1760 2.970324 TGTCAGGCAAACCGCGTC 60.970 61.111 4.92 0.00 43.84 5.19
844 1761 3.276846 GTGTCAGGCAAACCGCGT 61.277 61.111 4.92 0.00 43.84 6.01
845 1762 4.025401 GGTGTCAGGCAAACCGCG 62.025 66.667 0.00 0.00 43.84 6.46
848 1765 2.617274 GCTCGGTGTCAGGCAAACC 61.617 63.158 0.00 0.00 0.00 3.27
849 1766 2.946762 GCTCGGTGTCAGGCAAAC 59.053 61.111 0.00 0.00 0.00 2.93
850 1767 2.652382 TTCGCTCGGTGTCAGGCAAA 62.652 55.000 0.00 0.00 0.00 3.68
851 1768 3.158537 TTCGCTCGGTGTCAGGCAA 62.159 57.895 0.00 0.00 0.00 4.52
852 1769 3.611674 TTCGCTCGGTGTCAGGCA 61.612 61.111 0.00 0.00 0.00 4.75
853 1770 3.112709 GTTCGCTCGGTGTCAGGC 61.113 66.667 0.00 0.00 0.00 4.85
854 1771 2.742710 TTCGTTCGCTCGGTGTCAGG 62.743 60.000 0.00 0.00 0.00 3.86
855 1772 1.337817 CTTCGTTCGCTCGGTGTCAG 61.338 60.000 0.00 0.00 0.00 3.51
856 1773 1.371267 CTTCGTTCGCTCGGTGTCA 60.371 57.895 0.00 0.00 0.00 3.58
857 1774 2.717809 GCTTCGTTCGCTCGGTGTC 61.718 63.158 0.00 0.00 0.00 3.67
858 1775 2.733593 GCTTCGTTCGCTCGGTGT 60.734 61.111 0.00 0.00 0.00 4.16
859 1776 3.479269 GGCTTCGTTCGCTCGGTG 61.479 66.667 0.00 0.00 0.00 4.94
860 1777 4.736896 GGGCTTCGTTCGCTCGGT 62.737 66.667 0.00 0.00 0.00 4.69
1487 2494 4.771356 CGTCGCCGCCGAAGAAGA 62.771 66.667 0.00 0.00 46.34 2.87
1505 2512 2.646719 CGTCCACGAACCCGAAGA 59.353 61.111 0.00 0.00 43.02 2.87
1733 2779 3.861276 TCGAACTTATTGCTTCTCCGA 57.139 42.857 0.00 0.00 0.00 4.55
1774 2822 4.932200 ACAATTCTCAATAGGCTATAGCGC 59.068 41.667 18.30 11.30 43.26 5.92
1775 2823 6.393990 AGACAATTCTCAATAGGCTATAGCG 58.606 40.000 18.30 4.51 43.26 4.26
1776 2824 7.826260 GAGACAATTCTCAATAGGCTATAGC 57.174 40.000 16.78 16.78 46.84 2.97
1801 2849 9.109533 CAGACATTGTACACCGTTTTATTTAAC 57.890 33.333 0.00 0.00 0.00 2.01
1804 2852 6.674066 CCAGACATTGTACACCGTTTTATTT 58.326 36.000 0.00 0.00 0.00 1.40
1805 2853 5.335348 GCCAGACATTGTACACCGTTTTATT 60.335 40.000 0.00 0.00 0.00 1.40
1806 2854 4.155280 GCCAGACATTGTACACCGTTTTAT 59.845 41.667 0.00 0.00 0.00 1.40
1808 2856 2.292292 GCCAGACATTGTACACCGTTTT 59.708 45.455 0.00 0.00 0.00 2.43
1809 2857 1.877443 GCCAGACATTGTACACCGTTT 59.123 47.619 0.00 0.00 0.00 3.60
1810 2858 1.071699 AGCCAGACATTGTACACCGTT 59.928 47.619 0.00 0.00 0.00 4.44
1811 2859 0.685097 AGCCAGACATTGTACACCGT 59.315 50.000 0.00 0.00 0.00 4.83
1813 2861 4.511826 GCTATTAGCCAGACATTGTACACC 59.488 45.833 4.21 0.00 34.48 4.16
1814 2862 5.006746 GTGCTATTAGCCAGACATTGTACAC 59.993 44.000 13.01 0.00 41.51 2.90
1816 2864 4.209288 CGTGCTATTAGCCAGACATTGTAC 59.791 45.833 13.01 0.11 41.51 2.90
1818 2866 3.198068 CGTGCTATTAGCCAGACATTGT 58.802 45.455 13.01 0.00 41.51 2.71
1820 2868 2.158900 AGCGTGCTATTAGCCAGACATT 60.159 45.455 13.01 0.00 41.51 2.71
1821 2869 1.414181 AGCGTGCTATTAGCCAGACAT 59.586 47.619 13.01 0.00 41.51 3.06
1822 2870 0.824109 AGCGTGCTATTAGCCAGACA 59.176 50.000 13.01 0.00 41.51 3.41
1824 2872 3.119459 GCTATAGCGTGCTATTAGCCAGA 60.119 47.826 18.62 0.00 41.51 3.86
1825 2873 3.182967 GCTATAGCGTGCTATTAGCCAG 58.817 50.000 18.62 11.00 41.51 4.85
1852 2900 9.587772 CCTCAAAATATACTATTAGCGTGCTAT 57.412 33.333 1.86 0.00 0.00 2.97
1853 2901 8.582437 ACCTCAAAATATACTATTAGCGTGCTA 58.418 33.333 0.00 0.00 0.00 3.49
1854 2902 7.442656 ACCTCAAAATATACTATTAGCGTGCT 58.557 34.615 0.00 0.00 0.00 4.40
1855 2903 7.653767 ACCTCAAAATATACTATTAGCGTGC 57.346 36.000 0.00 0.00 0.00 5.34
1856 2904 9.256477 TCAACCTCAAAATATACTATTAGCGTG 57.744 33.333 0.00 0.00 0.00 5.34
1857 2905 9.998106 ATCAACCTCAAAATATACTATTAGCGT 57.002 29.630 0.00 0.00 0.00 5.07
1869 2917 9.859427 CAGAAAAATAGCATCAACCTCAAAATA 57.141 29.630 0.00 0.00 0.00 1.40
1870 2918 8.370182 ACAGAAAAATAGCATCAACCTCAAAAT 58.630 29.630 0.00 0.00 0.00 1.82
1871 2919 7.725251 ACAGAAAAATAGCATCAACCTCAAAA 58.275 30.769 0.00 0.00 0.00 2.44
1872 2920 7.288810 ACAGAAAAATAGCATCAACCTCAAA 57.711 32.000 0.00 0.00 0.00 2.69
1873 2921 6.899393 ACAGAAAAATAGCATCAACCTCAA 57.101 33.333 0.00 0.00 0.00 3.02
1874 2922 6.094048 GCTACAGAAAAATAGCATCAACCTCA 59.906 38.462 0.00 0.00 42.82 3.86
1875 2923 6.490534 GCTACAGAAAAATAGCATCAACCTC 58.509 40.000 0.00 0.00 42.82 3.85
1876 2924 5.065218 CGCTACAGAAAAATAGCATCAACCT 59.935 40.000 4.32 0.00 43.36 3.50
1877 2925 5.266242 CGCTACAGAAAAATAGCATCAACC 58.734 41.667 4.32 0.00 43.36 3.77
1878 2926 4.730521 GCGCTACAGAAAAATAGCATCAAC 59.269 41.667 0.00 0.00 43.36 3.18
1879 2927 4.494035 CGCGCTACAGAAAAATAGCATCAA 60.494 41.667 5.56 0.00 43.36 2.57
1880 2928 3.001228 CGCGCTACAGAAAAATAGCATCA 59.999 43.478 5.56 0.00 43.36 3.07
1881 2929 3.535860 CGCGCTACAGAAAAATAGCATC 58.464 45.455 5.56 0.00 43.36 3.91
1882 2930 2.286418 GCGCGCTACAGAAAAATAGCAT 60.286 45.455 26.67 0.00 43.36 3.79
1883 2931 1.062002 GCGCGCTACAGAAAAATAGCA 59.938 47.619 26.67 0.00 43.36 3.49
1884 2932 1.327764 AGCGCGCTACAGAAAAATAGC 59.672 47.619 35.79 0.00 40.40 2.97
1885 2933 4.974103 ATAGCGCGCTACAGAAAAATAG 57.026 40.909 40.42 0.00 0.00 1.73
1886 2934 5.728351 AAATAGCGCGCTACAGAAAAATA 57.272 34.783 40.42 19.14 0.00 1.40
1887 2935 4.616181 AAATAGCGCGCTACAGAAAAAT 57.384 36.364 40.42 22.12 0.00 1.82
1888 2936 4.413495 AAAATAGCGCGCTACAGAAAAA 57.587 36.364 40.42 20.74 0.00 1.94
1889 2937 4.413495 AAAAATAGCGCGCTACAGAAAA 57.587 36.364 40.42 21.55 0.00 2.29
1907 2955 4.035792 ACACACGATCGAACCAATGAAAAA 59.964 37.500 24.34 0.00 0.00 1.94
1908 2956 3.562141 ACACACGATCGAACCAATGAAAA 59.438 39.130 24.34 0.00 0.00 2.29
1909 2957 3.135225 ACACACGATCGAACCAATGAAA 58.865 40.909 24.34 0.00 0.00 2.69
1910 2958 2.761559 ACACACGATCGAACCAATGAA 58.238 42.857 24.34 0.00 0.00 2.57
1911 2959 2.448926 ACACACGATCGAACCAATGA 57.551 45.000 24.34 0.00 0.00 2.57
1912 2960 3.634730 GTACACACGATCGAACCAATG 57.365 47.619 24.34 10.95 0.00 2.82
1931 2979 4.989279 ACTACGTACCACCAATAATCGT 57.011 40.909 0.00 0.00 0.00 3.73
1932 2980 5.911280 CAGTACTACGTACCACCAATAATCG 59.089 44.000 0.00 0.00 39.58 3.34
1934 2982 6.780457 ACAGTACTACGTACCACCAATAAT 57.220 37.500 0.00 0.00 39.58 1.28
1937 2985 5.256474 ACTACAGTACTACGTACCACCAAT 58.744 41.667 0.00 0.00 39.58 3.16
1938 2986 4.651778 ACTACAGTACTACGTACCACCAA 58.348 43.478 0.00 0.00 39.58 3.67
1943 2991 5.107065 ACGAACAACTACAGTACTACGTACC 60.107 44.000 0.00 0.00 39.58 3.34
1946 2994 5.424121 AACGAACAACTACAGTACTACGT 57.576 39.130 0.00 0.00 0.00 3.57
1947 2995 5.116074 CCAAACGAACAACTACAGTACTACG 59.884 44.000 0.00 0.00 0.00 3.51
1950 2998 5.014808 ACCAAACGAACAACTACAGTACT 57.985 39.130 0.00 0.00 0.00 2.73
1952 3000 4.043750 CGACCAAACGAACAACTACAGTA 58.956 43.478 0.00 0.00 35.09 2.74
1954 3002 2.861935 ACGACCAAACGAACAACTACAG 59.138 45.455 0.00 0.00 37.03 2.74
1955 3003 2.604011 CACGACCAAACGAACAACTACA 59.396 45.455 0.00 0.00 37.03 2.74
1956 3004 2.604462 ACACGACCAAACGAACAACTAC 59.396 45.455 0.00 0.00 37.03 2.73
1957 3005 2.891112 ACACGACCAAACGAACAACTA 58.109 42.857 0.00 0.00 37.03 2.24
1958 3006 1.729284 ACACGACCAAACGAACAACT 58.271 45.000 0.00 0.00 37.03 3.16
1959 3007 2.604462 AGTACACGACCAAACGAACAAC 59.396 45.455 0.00 0.00 37.03 3.32
1960 3008 2.891112 AGTACACGACCAAACGAACAA 58.109 42.857 0.00 0.00 37.03 2.83
1961 3009 2.582728 AGTACACGACCAAACGAACA 57.417 45.000 0.00 0.00 37.03 3.18
1962 3010 2.604462 ACAAGTACACGACCAAACGAAC 59.396 45.455 0.00 0.00 37.03 3.95
1963 3011 2.604011 CACAAGTACACGACCAAACGAA 59.396 45.455 0.00 0.00 37.03 3.85
1965 3013 2.034339 GTCACAAGTACACGACCAAACG 60.034 50.000 0.00 0.00 39.31 3.60
1966 3014 2.034339 CGTCACAAGTACACGACCAAAC 60.034 50.000 0.00 0.00 35.49 2.93
1967 3015 2.195096 CGTCACAAGTACACGACCAAA 58.805 47.619 0.00 0.00 35.49 3.28
1969 3017 0.740149 ACGTCACAAGTACACGACCA 59.260 50.000 9.37 0.00 37.00 4.02
1973 3021 1.254313 CACACACGTCACAAGTACACG 59.746 52.381 0.00 0.00 39.48 4.49
1974 3022 2.028763 CACACACACGTCACAAGTACAC 59.971 50.000 0.00 0.00 0.00 2.90
1975 3023 2.263945 CACACACACGTCACAAGTACA 58.736 47.619 0.00 0.00 0.00 2.90
1976 3024 2.264813 ACACACACACGTCACAAGTAC 58.735 47.619 0.00 0.00 0.00 2.73
1977 3025 2.094649 TGACACACACACGTCACAAGTA 60.095 45.455 0.00 0.00 37.23 2.24
1978 3026 1.337354 TGACACACACACGTCACAAGT 60.337 47.619 0.00 0.00 37.23 3.16
1979 3027 1.355005 TGACACACACACGTCACAAG 58.645 50.000 0.00 0.00 37.23 3.16
1980 3028 1.797025 TTGACACACACACGTCACAA 58.203 45.000 0.00 0.00 41.67 3.33
1984 3032 1.295792 ACCATTGACACACACACGTC 58.704 50.000 0.00 0.00 0.00 4.34
1985 3033 2.159014 ACTACCATTGACACACACACGT 60.159 45.455 0.00 0.00 0.00 4.49
1986 3034 2.475111 GACTACCATTGACACACACACG 59.525 50.000 0.00 0.00 0.00 4.49
2002 3065 1.066071 GCCCCCACTGAAGAAGACTAC 60.066 57.143 0.00 0.00 0.00 2.73
2097 3165 1.956477 ACAGAACCAATTGTCAGCACC 59.044 47.619 4.43 0.00 0.00 5.01
2098 3166 2.287788 CCACAGAACCAATTGTCAGCAC 60.288 50.000 4.43 0.00 0.00 4.40
2109 3177 3.196469 TGAAACAAAATGCCACAGAACCA 59.804 39.130 0.00 0.00 0.00 3.67
2118 3186 5.006165 TCGTCAAATGTTGAAACAAAATGCC 59.994 36.000 0.00 0.00 43.03 4.40
2133 3201 1.705337 AATCCCGCGCTCGTCAAATG 61.705 55.000 5.56 0.00 0.00 2.32
2137 3205 1.940883 AAGTAATCCCGCGCTCGTCA 61.941 55.000 5.56 0.00 0.00 4.35
2181 3249 9.284968 CAAAACGGTCCAATCCTTCTATTATAT 57.715 33.333 0.00 0.00 0.00 0.86
2182 3250 7.227910 GCAAAACGGTCCAATCCTTCTATTATA 59.772 37.037 0.00 0.00 0.00 0.98
2211 3279 1.066454 GAAAACCCAACAACACGAGGG 59.934 52.381 0.00 0.00 46.96 4.30
2212 3280 1.746220 TGAAAACCCAACAACACGAGG 59.254 47.619 0.00 0.00 0.00 4.63
2213 3281 3.708563 ATGAAAACCCAACAACACGAG 57.291 42.857 0.00 0.00 0.00 4.18
2214 3282 4.200874 ACTATGAAAACCCAACAACACGA 58.799 39.130 0.00 0.00 0.00 4.35
2215 3283 4.274950 AGACTATGAAAACCCAACAACACG 59.725 41.667 0.00 0.00 0.00 4.49
2216 3284 5.767816 AGACTATGAAAACCCAACAACAC 57.232 39.130 0.00 0.00 0.00 3.32
2217 3285 8.472007 AAATAGACTATGAAAACCCAACAACA 57.528 30.769 0.00 0.00 0.00 3.33
2218 3286 9.836076 GTAAATAGACTATGAAAACCCAACAAC 57.164 33.333 0.00 0.00 0.00 3.32
2785 3855 8.374743 GCCCCATCAAAATACCACATTATAAAT 58.625 33.333 0.00 0.00 0.00 1.40
2786 3856 7.202047 GGCCCCATCAAAATACCACATTATAAA 60.202 37.037 0.00 0.00 0.00 1.40
2787 3857 6.268847 GGCCCCATCAAAATACCACATTATAA 59.731 38.462 0.00 0.00 0.00 0.98
2788 3858 5.777732 GGCCCCATCAAAATACCACATTATA 59.222 40.000 0.00 0.00 0.00 0.98
2789 3859 4.592778 GGCCCCATCAAAATACCACATTAT 59.407 41.667 0.00 0.00 0.00 1.28
2790 3860 3.964031 GGCCCCATCAAAATACCACATTA 59.036 43.478 0.00 0.00 0.00 1.90
2791 3861 2.771372 GGCCCCATCAAAATACCACATT 59.229 45.455 0.00 0.00 0.00 2.71
2792 3862 2.023113 AGGCCCCATCAAAATACCACAT 60.023 45.455 0.00 0.00 0.00 3.21
2793 3863 1.360852 AGGCCCCATCAAAATACCACA 59.639 47.619 0.00 0.00 0.00 4.17
2794 3864 2.159179 AGGCCCCATCAAAATACCAC 57.841 50.000 0.00 0.00 0.00 4.16
2795 3865 2.938428 AAGGCCCCATCAAAATACCA 57.062 45.000 0.00 0.00 0.00 3.25
2796 3866 2.100749 CGAAAGGCCCCATCAAAATACC 59.899 50.000 0.00 0.00 0.00 2.73
2797 3867 2.481276 GCGAAAGGCCCCATCAAAATAC 60.481 50.000 0.00 0.00 34.80 1.89
2798 3868 1.754226 GCGAAAGGCCCCATCAAAATA 59.246 47.619 0.00 0.00 34.80 1.40
2799 3869 0.536724 GCGAAAGGCCCCATCAAAAT 59.463 50.000 0.00 0.00 34.80 1.82
2800 3870 1.872197 CGCGAAAGGCCCCATCAAAA 61.872 55.000 0.00 0.00 38.94 2.44
2801 3871 2.339556 CGCGAAAGGCCCCATCAAA 61.340 57.895 0.00 0.00 38.94 2.69
2802 3872 2.749839 CGCGAAAGGCCCCATCAA 60.750 61.111 0.00 0.00 38.94 2.57
2803 3873 4.794648 CCGCGAAAGGCCCCATCA 62.795 66.667 8.23 0.00 38.94 3.07
2804 3874 2.676163 ATACCGCGAAAGGCCCCATC 62.676 60.000 8.23 0.00 38.94 3.51
2805 3875 2.752807 ATACCGCGAAAGGCCCCAT 61.753 57.895 8.23 0.00 38.94 4.00
2806 3876 3.404438 ATACCGCGAAAGGCCCCA 61.404 61.111 8.23 0.00 38.94 4.96
2807 3877 2.900337 CATACCGCGAAAGGCCCC 60.900 66.667 8.23 0.00 38.94 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.