Multiple sequence alignment - TraesCS5A01G423300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G423300 chr5A 100.000 8146 0 0 1 8146 609203414 609211559 0.000000e+00 15043
1 TraesCS5A01G423300 chr5A 96.232 1380 49 2 5582 6961 609229010 609230386 0.000000e+00 2257
2 TraesCS5A01G423300 chr5A 94.703 774 18 7 4697 5447 609228236 609229009 0.000000e+00 1181
3 TraesCS5A01G423300 chr5A 87.433 374 34 2 6972 7345 609239699 609240059 1.260000e-112 418
4 TraesCS5A01G423300 chr5A 82.573 241 5 18 7942 8146 609240571 609240810 2.340000e-40 178
5 TraesCS5A01G423300 chr5B 92.393 4601 239 48 2991 7537 601332529 601337072 0.000000e+00 6455
6 TraesCS5A01G423300 chr5B 91.566 2893 124 49 1 2829 601329646 601332482 0.000000e+00 3880
7 TraesCS5A01G423300 chr5B 81.590 239 6 10 7941 8145 601344236 601344470 6.540000e-36 163
8 TraesCS5A01G423300 chr5B 81.435 237 5 14 7944 8145 601337405 601337637 3.040000e-34 158
9 TraesCS5A01G423300 chr5D 93.676 3558 173 33 1547 5087 488348798 488352320 0.000000e+00 5276
10 TraesCS5A01G423300 chr5D 91.477 2417 98 14 5067 7437 488352495 488354849 0.000000e+00 3223
11 TraesCS5A01G423300 chr5D 86.494 770 41 25 846 1597 488348075 488348799 0.000000e+00 787
12 TraesCS5A01G423300 chr5D 83.307 623 37 32 194 801 488347508 488348078 5.640000e-141 512
13 TraesCS5A01G423300 chr5D 95.858 169 6 1 7516 7683 488354869 488355037 1.040000e-68 272
14 TraesCS5A01G423300 chr5D 88.412 233 13 6 38 261 537938844 537938617 1.350000e-67 268
15 TraesCS5A01G423300 chr5D 86.486 185 13 5 7745 7921 488355166 488355346 8.340000e-45 193
16 TraesCS5A01G423300 chr5D 92.381 105 2 3 8044 8146 488355479 488355579 2.370000e-30 145
17 TraesCS5A01G423300 chr5D 88.525 122 3 4 7932 8042 488355329 488355450 3.960000e-28 137
18 TraesCS5A01G423300 chr5D 91.026 78 5 2 7672 7749 488355053 488355128 4.020000e-18 104
19 TraesCS5A01G423300 chr1D 94.882 254 9 1 319 572 239784705 239784456 2.130000e-105 394
20 TraesCS5A01G423300 chr1D 86.695 233 17 7 38 261 239784927 239784700 6.310000e-61 246
21 TraesCS5A01G423300 chr7B 92.913 254 14 1 319 572 625272339 625272090 4.650000e-97 366
22 TraesCS5A01G423300 chr3B 92.913 254 14 1 319 572 62349721 62349472 4.650000e-97 366
23 TraesCS5A01G423300 chr3A 92.913 254 14 1 319 572 611009626 611009377 4.650000e-97 366
24 TraesCS5A01G423300 chr2D 92.913 254 14 1 319 572 200393695 200393446 4.650000e-97 366
25 TraesCS5A01G423300 chr2D 87.124 233 16 6 38 261 42604082 42603855 1.360000e-62 252
26 TraesCS5A01G423300 chr2D 85.408 233 19 8 38 261 200393916 200393690 2.290000e-55 228
27 TraesCS5A01G423300 chr4D 92.913 254 13 2 319 572 153051492 153051244 1.670000e-96 364
28 TraesCS5A01G423300 chr4D 87.983 233 14 6 38 261 153051714 153051487 6.270000e-66 263
29 TraesCS5A01G423300 chr4D 100.000 61 0 0 7499 7559 123320943 123321003 6.680000e-21 113
30 TraesCS5A01G423300 chr2B 92.857 252 13 2 319 570 346735860 346735614 2.160000e-95 361
31 TraesCS5A01G423300 chr2B 92.520 254 15 1 319 572 736604775 736605024 2.160000e-95 361
32 TraesCS5A01G423300 chr7A 87.983 233 14 6 38 261 151359740 151359513 6.270000e-66 263
33 TraesCS5A01G423300 chr7A 87.391 230 15 6 38 258 578331615 578331839 1.360000e-62 252
34 TraesCS5A01G423300 chr1B 86.522 230 17 6 38 258 632856812 632857036 2.940000e-59 241
35 TraesCS5A01G423300 chrUn 100.000 61 0 0 7499 7559 86516598 86516658 6.680000e-21 113
36 TraesCS5A01G423300 chrUn 100.000 61 0 0 7499 7559 206784116 206784176 6.680000e-21 113
37 TraesCS5A01G423300 chrUn 100.000 61 0 0 7499 7559 345389182 345389122 6.680000e-21 113
38 TraesCS5A01G423300 chr7D 100.000 61 0 0 7499 7559 203485458 203485518 6.680000e-21 113
39 TraesCS5A01G423300 chr3D 100.000 61 0 0 7499 7559 213395602 213395662 6.680000e-21 113
40 TraesCS5A01G423300 chr3D 100.000 61 0 0 7499 7559 523768808 523768868 6.680000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G423300 chr5A 609203414 609211559 8145 False 15043.000000 15043 100.000000 1 8146 1 chr5A.!!$F1 8145
1 TraesCS5A01G423300 chr5A 609228236 609230386 2150 False 1719.000000 2257 95.467500 4697 6961 2 chr5A.!!$F2 2264
2 TraesCS5A01G423300 chr5A 609239699 609240810 1111 False 298.000000 418 85.003000 6972 8146 2 chr5A.!!$F3 1174
3 TraesCS5A01G423300 chr5B 601329646 601337637 7991 False 3497.666667 6455 88.464667 1 8145 3 chr5B.!!$F2 8144
4 TraesCS5A01G423300 chr5D 488347508 488355579 8071 False 1183.222222 5276 89.914444 194 8146 9 chr5D.!!$F1 7952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 84 0.253044 ACCTTCCCACGTGGATGATG 59.747 55.000 36.07 23.81 44.66 3.07 F
72 87 0.255604 TTCCCACGTGGATGATGCAT 59.744 50.000 36.07 0.00 44.66 3.96 F
620 663 0.321671 TTCGAGTTGGAGAGCTTGGG 59.678 55.000 0.00 0.00 0.00 4.12 F
1504 1599 0.744414 AATCTGCGGAACATGGGACG 60.744 55.000 0.00 0.00 0.00 4.79 F
1567 1715 0.249447 GGTTGGTGTTTGCTGCCTTC 60.249 55.000 0.00 0.00 0.00 3.46 F
2995 3152 0.260230 TGTCAGTTTTGGAAGGCCCA 59.740 50.000 0.00 0.00 44.93 5.36 F
3577 3737 1.376553 GCAGCTCCTTGACAGTCCC 60.377 63.158 0.00 0.00 0.00 4.46 F
4577 4743 0.389948 GTACTCTGTTCGCACCCCAG 60.390 60.000 0.00 0.00 0.00 4.45 F
4794 4963 1.977854 TGCACATGCTATACCTAGGGG 59.022 52.381 14.81 1.36 42.66 4.79 F
6582 7014 1.529244 AGCAAGTCCACCAACAGGC 60.529 57.895 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1537 0.311790 GGTGTGTGTGCAGGTTCATG 59.688 55.000 0.00 0.00 0.00 3.07 R
1544 1640 0.313987 GCAGCAAACACCAACCTACC 59.686 55.000 0.00 0.00 0.00 3.18 R
1550 1646 0.749818 TCGAAGGCAGCAAACACCAA 60.750 50.000 0.00 0.00 0.00 3.67 R
3368 3527 1.011451 GTCACTGCTTGCCTCGAGAC 61.011 60.000 15.71 1.72 0.00 3.36 R
3394 3553 3.747529 CCAATCAAATGAAACCAACTGGC 59.252 43.478 0.00 0.00 39.32 4.85 R
3977 4138 0.700564 AGATGCTGCCAGAGGGAAAA 59.299 50.000 0.00 0.00 35.59 2.29 R
5150 5511 0.179215 GAAAACTCGTGCTGCATCCG 60.179 55.000 5.27 5.90 0.00 4.18 R
5542 5925 3.584848 AGGAACAGCATCTAAGGTGAAGT 59.415 43.478 0.00 0.00 40.11 3.01 R
6588 7020 1.614317 CCTCCGGCTCCTTTTGTGATT 60.614 52.381 0.00 0.00 0.00 2.57 R
7940 8565 1.065126 CGATCTGCTTTCTCCCCCTTT 60.065 52.381 0.00 0.00 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.323629 TTCACCCAAACCTCCTAGCG 59.676 55.000 0.00 0.00 0.00 4.26
38 39 0.543410 TCACCCAAACCTCCTAGCGA 60.543 55.000 0.00 0.00 0.00 4.93
39 40 0.541863 CACCCAAACCTCCTAGCGAT 59.458 55.000 0.00 0.00 0.00 4.58
40 41 0.831307 ACCCAAACCTCCTAGCGATC 59.169 55.000 0.00 0.00 0.00 3.69
54 69 4.876107 CCTAGCGATCAACACAATTACCTT 59.124 41.667 0.00 0.00 0.00 3.50
55 70 4.946784 AGCGATCAACACAATTACCTTC 57.053 40.909 0.00 0.00 0.00 3.46
60 75 3.142951 TCAACACAATTACCTTCCCACG 58.857 45.455 0.00 0.00 0.00 4.94
67 82 1.646912 TTACCTTCCCACGTGGATGA 58.353 50.000 36.07 22.13 44.66 2.92
68 83 1.874129 TACCTTCCCACGTGGATGAT 58.126 50.000 36.07 18.27 44.66 2.45
69 84 0.253044 ACCTTCCCACGTGGATGATG 59.747 55.000 36.07 23.81 44.66 3.07
72 87 0.255604 TTCCCACGTGGATGATGCAT 59.744 50.000 36.07 0.00 44.66 3.96
94 109 3.999229 GCTATGCAGCGTATACCAATC 57.001 47.619 0.00 0.00 38.22 2.67
95 110 3.325870 GCTATGCAGCGTATACCAATCA 58.674 45.455 0.00 0.00 38.22 2.57
100 115 5.574891 TGCAGCGTATACCAATCAAAAAT 57.425 34.783 0.00 0.00 0.00 1.82
101 116 6.685527 TGCAGCGTATACCAATCAAAAATA 57.314 33.333 0.00 0.00 0.00 1.40
124 139 3.013921 ACTCAAAACAGAACTCGCCAAA 58.986 40.909 0.00 0.00 0.00 3.28
172 187 0.637195 TTTCACCCCAAACCTCCCAA 59.363 50.000 0.00 0.00 0.00 4.12
182 197 0.550914 AACCTCCCAAGCTTCACACA 59.449 50.000 0.00 0.00 0.00 3.72
183 198 0.773644 ACCTCCCAAGCTTCACACAT 59.226 50.000 0.00 0.00 0.00 3.21
609 652 3.423154 GGTGGGCGCTTCGAGTTG 61.423 66.667 7.64 0.00 0.00 3.16
616 659 1.214062 CGCTTCGAGTTGGAGAGCT 59.786 57.895 1.92 0.00 0.00 4.09
617 660 0.389166 CGCTTCGAGTTGGAGAGCTT 60.389 55.000 1.92 0.00 0.00 3.74
618 661 1.074752 GCTTCGAGTTGGAGAGCTTG 58.925 55.000 0.00 0.00 0.00 4.01
619 662 1.719600 CTTCGAGTTGGAGAGCTTGG 58.280 55.000 0.00 0.00 0.00 3.61
620 663 0.321671 TTCGAGTTGGAGAGCTTGGG 59.678 55.000 0.00 0.00 0.00 4.12
658 706 2.482374 GGCTGATGCGTTGTGCTC 59.518 61.111 0.00 0.00 46.63 4.26
761 823 4.324991 GCGAGGTTGGGGTCGGTT 62.325 66.667 0.00 0.00 36.67 4.44
863 925 1.412710 CTAGGCCCATGAAGCGTAAGA 59.587 52.381 0.00 0.00 43.02 2.10
892 954 4.864704 TTTTTGGGCTTGTAGCTTAAGG 57.135 40.909 4.29 0.00 41.99 2.69
893 955 3.799432 TTTGGGCTTGTAGCTTAAGGA 57.201 42.857 4.29 0.00 41.99 3.36
894 956 3.799432 TTGGGCTTGTAGCTTAAGGAA 57.201 42.857 4.29 0.00 41.99 3.36
911 976 7.698550 GCTTAAGGAATTTCTAAGTTAAGCTGC 59.301 37.037 22.17 0.00 44.50 5.25
912 977 8.863872 TTAAGGAATTTCTAAGTTAAGCTGCT 57.136 30.769 0.00 0.00 0.00 4.24
913 978 9.953565 TTAAGGAATTTCTAAGTTAAGCTGCTA 57.046 29.630 0.90 0.00 0.00 3.49
914 979 7.851387 AGGAATTTCTAAGTTAAGCTGCTAC 57.149 36.000 0.90 0.00 0.00 3.58
915 980 6.535508 AGGAATTTCTAAGTTAAGCTGCTACG 59.464 38.462 0.90 0.00 0.00 3.51
918 983 3.770666 TCTAAGTTAAGCTGCTACGCTG 58.229 45.455 0.90 0.00 40.79 5.18
937 1002 1.820010 GCAAAGGAACTGGGCCTTGG 61.820 60.000 4.53 0.00 44.72 3.61
1388 1478 8.251721 GCTCCTTCAACTGAACTAGAGTATTTA 58.748 37.037 0.00 0.00 0.00 1.40
1408 1498 2.338140 GCCAGTTGCTTGCTTACTTC 57.662 50.000 0.00 0.00 36.87 3.01
1413 1503 4.044426 CAGTTGCTTGCTTACTTCAAACC 58.956 43.478 0.00 0.00 0.00 3.27
1420 1510 6.072508 TGCTTGCTTACTTCAAACCTAGAATG 60.073 38.462 0.00 0.00 0.00 2.67
1445 1537 1.659098 CGCACTCCGTTTCTATTGTCC 59.341 52.381 0.00 0.00 0.00 4.02
1455 1547 4.437390 CGTTTCTATTGTCCATGAACCTGC 60.437 45.833 0.00 0.00 0.00 4.85
1456 1548 3.998913 TCTATTGTCCATGAACCTGCA 57.001 42.857 0.00 0.00 0.00 4.41
1457 1549 3.609853 TCTATTGTCCATGAACCTGCAC 58.390 45.455 0.00 0.00 0.00 4.57
1458 1550 2.291209 ATTGTCCATGAACCTGCACA 57.709 45.000 0.00 0.00 0.00 4.57
1502 1597 2.849942 CATAATCTGCGGAACATGGGA 58.150 47.619 0.00 0.00 0.00 4.37
1503 1598 2.325583 TAATCTGCGGAACATGGGAC 57.674 50.000 0.00 0.00 0.00 4.46
1504 1599 0.744414 AATCTGCGGAACATGGGACG 60.744 55.000 0.00 0.00 0.00 4.79
1509 1604 1.219664 CGGAACATGGGACGGCTTA 59.780 57.895 0.00 0.00 0.00 3.09
1512 1608 1.339727 GGAACATGGGACGGCTTAAGT 60.340 52.381 4.02 0.00 0.00 2.24
1544 1640 4.624882 GTCTAACTGACATGAAGAGCACTG 59.375 45.833 0.00 0.00 44.73 3.66
1550 1646 2.234908 GACATGAAGAGCACTGGTAGGT 59.765 50.000 0.00 0.00 0.00 3.08
1555 1703 0.687354 AGAGCACTGGTAGGTTGGTG 59.313 55.000 0.00 0.00 0.00 4.17
1567 1715 0.249447 GGTTGGTGTTTGCTGCCTTC 60.249 55.000 0.00 0.00 0.00 3.46
1576 1724 1.825090 TTGCTGCCTTCGATGTGAAT 58.175 45.000 0.00 0.00 35.63 2.57
1579 1727 1.470098 GCTGCCTTCGATGTGAATTGT 59.530 47.619 0.00 0.00 35.63 2.71
1599 1747 9.210426 GAATTGTCACTTAACAATAGCATAACG 57.790 33.333 2.94 0.00 46.49 3.18
1600 1748 7.892778 TTGTCACTTAACAATAGCATAACGA 57.107 32.000 0.00 0.00 34.31 3.85
1617 1765 6.741358 GCATAACGAAAATTCTACCAGTGTTC 59.259 38.462 0.00 0.00 0.00 3.18
1619 1767 6.541111 AACGAAAATTCTACCAGTGTTCTC 57.459 37.500 0.00 0.00 0.00 2.87
1623 1771 4.884668 AATTCTACCAGTGTTCTCGGAA 57.115 40.909 0.00 0.00 0.00 4.30
1626 1774 4.884668 TCTACCAGTGTTCTCGGAAATT 57.115 40.909 0.00 0.00 0.00 1.82
1636 1784 8.338259 CAGTGTTCTCGGAAATTATTGGAATAG 58.662 37.037 0.00 0.00 0.00 1.73
1665 1813 9.561069 TTGATAATAAGAAGCCAAAGAGGATAC 57.439 33.333 0.00 0.00 41.22 2.24
1700 1848 5.311844 AGAAGAGGAAGCAAAGTTTAGGT 57.688 39.130 0.00 0.00 0.00 3.08
1701 1849 5.696030 AGAAGAGGAAGCAAAGTTTAGGTT 58.304 37.500 0.00 0.00 0.00 3.50
1702 1850 6.129874 AGAAGAGGAAGCAAAGTTTAGGTTT 58.870 36.000 0.00 0.00 0.00 3.27
1768 1916 3.509442 TCTGTTTGAGCCCATTTGGATT 58.491 40.909 0.00 0.00 37.39 3.01
1778 1926 1.493022 CCATTTGGATTCCCCGGACTA 59.507 52.381 0.73 0.00 37.93 2.59
1798 1946 9.991388 CGGACTAGAGTTATACTTATATGCTTC 57.009 37.037 0.00 0.00 0.00 3.86
1853 2001 1.153549 CCGCTCCTTGGTAGCTCAC 60.154 63.158 0.00 0.00 37.85 3.51
1858 2006 2.551071 GCTCCTTGGTAGCTCACTGTTT 60.551 50.000 0.00 0.00 37.01 2.83
1891 2039 0.677731 CTTGGTCCATGGCACGTGAT 60.678 55.000 22.23 0.90 0.00 3.06
1898 2046 1.401409 CCATGGCACGTGATTTCACAC 60.401 52.381 22.23 0.00 46.75 3.82
1914 2062 1.741706 CACACATTCTGGCTGTCCATC 59.258 52.381 0.00 0.00 42.51 3.51
1930 2079 6.483640 GCTGTCCATCGGATATATTTATTCCC 59.516 42.308 0.00 0.00 32.73 3.97
2037 2186 4.458989 GCTGGTGGAATGTTTGAGAATACA 59.541 41.667 0.00 0.00 0.00 2.29
2068 2217 5.827797 TCTAATGGGTCCTGATTATTGTTGC 59.172 40.000 0.00 0.00 0.00 4.17
2097 2246 6.455647 TGGGCTATTTCAGTATAACGATGAG 58.544 40.000 0.00 0.00 0.00 2.90
2118 2267 2.163412 GCACAGAGACGAGACAGAAGAT 59.837 50.000 0.00 0.00 0.00 2.40
2185 2334 5.786264 ATGGCAAGGAAATGAGATCATTC 57.214 39.130 8.45 3.29 45.06 2.67
2257 2406 3.604582 AGTCAAGAGGTCAAGCTTATGC 58.395 45.455 0.00 0.00 40.05 3.14
2333 2483 3.737559 ACCATCTGAAAAGGGCATGTA 57.262 42.857 0.00 0.00 0.00 2.29
2389 2539 0.390472 GCTGCCACCTCAGTCTGTAC 60.390 60.000 0.00 0.00 36.49 2.90
2509 2659 4.287067 ACTCCATGGTTCTCTTTTCAGCTA 59.713 41.667 12.58 0.00 0.00 3.32
2600 2751 6.975196 TGCCTATATTTGCACCAATGTAAT 57.025 33.333 0.00 0.00 29.85 1.89
2618 2770 9.694520 CAATGTAATGACTCTGTTATTTTCTCG 57.305 33.333 0.00 0.00 0.00 4.04
2810 2962 1.200020 GAGGACAATCCCTTGCAAACG 59.800 52.381 0.00 0.00 37.19 3.60
2856 3008 4.032786 GTGTTTTGGCACAGCTTTTTAGTG 59.967 41.667 0.00 0.00 42.39 2.74
2885 3037 3.650942 ACCCTCACTTTCATGGACAGTTA 59.349 43.478 0.00 0.00 0.00 2.24
2886 3038 4.289672 ACCCTCACTTTCATGGACAGTTAT 59.710 41.667 0.00 0.00 0.00 1.89
2887 3039 5.487488 ACCCTCACTTTCATGGACAGTTATA 59.513 40.000 0.00 0.00 0.00 0.98
2888 3040 5.817816 CCCTCACTTTCATGGACAGTTATAC 59.182 44.000 0.00 0.00 0.00 1.47
2889 3041 6.352222 CCCTCACTTTCATGGACAGTTATACT 60.352 42.308 0.00 0.00 0.00 2.12
2890 3042 6.758886 CCTCACTTTCATGGACAGTTATACTC 59.241 42.308 0.00 0.00 0.00 2.59
2940 3093 9.047947 ACTCACTGTTTTAAGATTATACTCCCT 57.952 33.333 0.00 0.00 0.00 4.20
2964 3121 6.843752 TCCCTTTAGGTTTGTTACATCTCAA 58.156 36.000 0.00 0.00 36.75 3.02
2995 3152 0.260230 TGTCAGTTTTGGAAGGCCCA 59.740 50.000 0.00 0.00 44.93 5.36
3066 3224 9.219603 CTGTCTAAATTTAGTTCTCAATGTGGA 57.780 33.333 21.69 0.00 32.61 4.02
3078 3236 9.793259 AGTTCTCAATGTGGAATTTAGTTCTAA 57.207 29.630 0.00 0.00 37.01 2.10
3152 3310 6.502863 ACTTAATTAGGTCCTCCTTGGTTACA 59.497 38.462 0.00 0.00 42.12 2.41
3196 3355 9.260002 CAAATGGATTAAGCTTAAACTTTGTGT 57.740 29.630 22.13 3.77 0.00 3.72
3273 3432 9.582223 GTAAGTTCTCTTCGAAGTGTTAAAATG 57.418 33.333 23.85 5.59 35.49 2.32
3336 3495 4.207955 ACTCTCAGACCTGCGACATAATA 58.792 43.478 0.00 0.00 0.00 0.98
3368 3527 3.628942 TGATGCATTCTCCAAGAATTCCG 59.371 43.478 0.00 0.00 41.90 4.30
3394 3553 1.656441 GCAAGCAGTGACCAACCAG 59.344 57.895 0.00 0.00 0.00 4.00
3467 3626 7.093945 ACCGTATCCTAAATTTTCATGTTGCTT 60.094 33.333 0.00 0.00 0.00 3.91
3489 3648 4.074259 TGTGTTGCTGAGATTTGCTATGT 58.926 39.130 0.00 0.00 0.00 2.29
3577 3737 1.376553 GCAGCTCCTTGACAGTCCC 60.377 63.158 0.00 0.00 0.00 4.46
3639 3799 6.065976 TGATCATTAGGTGACAGGTGAATT 57.934 37.500 0.00 0.00 40.28 2.17
3704 3864 4.691326 ACTATTGCTTAAGTAGGCCCTC 57.309 45.455 0.00 0.00 0.00 4.30
3762 3922 4.401202 TGTTTCTCCCTTTGTGTTTTCTCC 59.599 41.667 0.00 0.00 0.00 3.71
3782 3942 3.119388 TCCCGTGTTTACTTCATAGGTCG 60.119 47.826 0.00 0.00 0.00 4.79
3791 3951 3.926616 ACTTCATAGGTCGTGGAAGTTG 58.073 45.455 0.00 0.00 45.52 3.16
3827 3987 8.734386 GGTTGATTTGATCCATAGCTAATAAGG 58.266 37.037 0.00 0.00 0.00 2.69
3931 4092 8.424274 AATTTCTGAAATTTGGTGAACTTGTC 57.576 30.769 19.79 0.00 37.84 3.18
3969 4130 3.294038 TTCTTCCTACCCTACCGAGAG 57.706 52.381 0.00 0.00 0.00 3.20
3972 4133 3.390639 TCTTCCTACCCTACCGAGAGTAG 59.609 52.174 0.00 0.00 46.99 2.57
3977 4138 3.666345 ACCCTACCGAGAGTAGTTGAT 57.334 47.619 0.00 0.00 46.15 2.57
4048 4210 6.752285 TCACTAACTTTGTAGGGTTAGGTT 57.248 37.500 14.53 0.00 45.15 3.50
4125 4287 6.719370 AGTGGCCTAATTCAAGAATGTTTGTA 59.281 34.615 3.32 0.00 0.00 2.41
4166 4328 4.604843 ACAACTATCAATCATGCACGTG 57.395 40.909 12.28 12.28 0.00 4.49
4195 4358 7.237255 TGCATGGTTCCCATAATATACATTCA 58.763 34.615 0.00 0.00 43.15 2.57
4384 4550 3.312421 GCCGTAAGCATGCAATTAAGAGA 59.688 43.478 21.98 0.00 42.97 3.10
4448 4614 9.759259 CTATTAATATGATGTATGCACGGTTTG 57.241 33.333 0.00 0.00 0.00 2.93
4570 4736 9.841880 TCTAATATTCATATGTACTCTGTTCGC 57.158 33.333 1.90 0.00 0.00 4.70
4577 4743 0.389948 GTACTCTGTTCGCACCCCAG 60.390 60.000 0.00 0.00 0.00 4.45
4588 4754 2.113986 ACCCCAGCTCAGCACAAC 59.886 61.111 0.00 0.00 0.00 3.32
4617 4783 6.420913 TTGCCTCTTCTACTCTTACAAGTT 57.579 37.500 0.00 0.00 0.00 2.66
4618 4784 7.534723 TTGCCTCTTCTACTCTTACAAGTTA 57.465 36.000 0.00 0.00 0.00 2.24
4619 4785 6.921914 TGCCTCTTCTACTCTTACAAGTTAC 58.078 40.000 0.00 0.00 0.00 2.50
4620 4786 6.492429 TGCCTCTTCTACTCTTACAAGTTACA 59.508 38.462 0.00 0.00 0.00 2.41
4621 4787 7.014905 TGCCTCTTCTACTCTTACAAGTTACAA 59.985 37.037 0.00 0.00 0.00 2.41
4622 4788 7.542824 GCCTCTTCTACTCTTACAAGTTACAAG 59.457 40.741 0.00 0.00 0.00 3.16
4623 4789 8.578151 CCTCTTCTACTCTTACAAGTTACAAGT 58.422 37.037 0.00 0.00 0.00 3.16
4794 4963 1.977854 TGCACATGCTATACCTAGGGG 59.022 52.381 14.81 1.36 42.66 4.79
5036 5207 8.921670 GTTACCAAAAATGTTATCACCATTCAC 58.078 33.333 0.00 0.00 31.49 3.18
5214 5597 8.920665 CCTAAGCATTTAATCTACAGATTCTCG 58.079 37.037 7.72 0.00 43.17 4.04
5462 5845 9.574516 AATTTTATTCCTCAAGTACTGTGAGTT 57.425 29.630 22.48 14.54 40.83 3.01
5465 5848 9.653287 TTTATTCCTCAAGTACTGTGAGTTATG 57.347 33.333 22.48 13.49 40.83 1.90
5466 5849 6.665992 TTCCTCAAGTACTGTGAGTTATGT 57.334 37.500 22.48 0.00 40.83 2.29
5467 5850 6.665992 TCCTCAAGTACTGTGAGTTATGTT 57.334 37.500 22.48 0.00 40.83 2.71
5468 5851 6.688578 TCCTCAAGTACTGTGAGTTATGTTC 58.311 40.000 22.48 0.00 40.83 3.18
5469 5852 5.869888 CCTCAAGTACTGTGAGTTATGTTCC 59.130 44.000 22.48 0.00 40.83 3.62
5470 5853 6.295349 CCTCAAGTACTGTGAGTTATGTTCCT 60.295 42.308 22.48 0.00 40.83 3.36
5471 5854 6.688578 TCAAGTACTGTGAGTTATGTTCCTC 58.311 40.000 0.00 0.00 0.00 3.71
5472 5855 6.266786 TCAAGTACTGTGAGTTATGTTCCTCA 59.733 38.462 0.00 0.00 35.42 3.86
5473 5856 6.665992 AGTACTGTGAGTTATGTTCCTCAA 57.334 37.500 0.00 0.00 39.29 3.02
5474 5857 6.692486 AGTACTGTGAGTTATGTTCCTCAAG 58.308 40.000 0.00 0.00 39.29 3.02
5475 5858 5.552870 ACTGTGAGTTATGTTCCTCAAGT 57.447 39.130 0.00 0.00 39.29 3.16
5476 5859 6.665992 ACTGTGAGTTATGTTCCTCAAGTA 57.334 37.500 0.00 0.00 39.29 2.24
5477 5860 6.456501 ACTGTGAGTTATGTTCCTCAAGTAC 58.543 40.000 0.00 0.00 39.29 2.73
5478 5861 6.267928 ACTGTGAGTTATGTTCCTCAAGTACT 59.732 38.462 0.00 0.00 39.29 2.73
5479 5862 6.455647 TGTGAGTTATGTTCCTCAAGTACTG 58.544 40.000 0.00 0.00 39.29 2.74
5495 5878 5.065704 AGTACTGTGAGTTATGTGAGCAG 57.934 43.478 0.00 0.00 0.00 4.24
5498 5881 5.157940 ACTGTGAGTTATGTGAGCAGAAT 57.842 39.130 0.00 0.00 0.00 2.40
5542 5925 9.539825 GAATGCTTTCTTACATCTCAGAGAATA 57.460 33.333 3.63 0.00 0.00 1.75
5557 5940 6.810911 TCAGAGAATACTTCACCTTAGATGC 58.189 40.000 0.00 0.00 0.00 3.91
5572 5975 5.710099 CCTTAGATGCTGTTCCTGGTTTTTA 59.290 40.000 0.00 0.00 0.00 1.52
5573 5976 6.208599 CCTTAGATGCTGTTCCTGGTTTTTAA 59.791 38.462 0.00 0.00 0.00 1.52
5574 5977 7.255801 CCTTAGATGCTGTTCCTGGTTTTTAAA 60.256 37.037 0.00 0.00 0.00 1.52
5575 5978 6.670695 AGATGCTGTTCCTGGTTTTTAAAT 57.329 33.333 0.00 0.00 0.00 1.40
5576 5979 7.775053 AGATGCTGTTCCTGGTTTTTAAATA 57.225 32.000 0.00 0.00 0.00 1.40
5577 5980 8.189119 AGATGCTGTTCCTGGTTTTTAAATAA 57.811 30.769 0.00 0.00 0.00 1.40
5578 5981 8.306761 AGATGCTGTTCCTGGTTTTTAAATAAG 58.693 33.333 0.00 0.00 0.00 1.73
5579 5982 7.589958 TGCTGTTCCTGGTTTTTAAATAAGA 57.410 32.000 0.00 0.00 0.00 2.10
5580 5983 8.012957 TGCTGTTCCTGGTTTTTAAATAAGAA 57.987 30.769 0.00 0.00 0.00 2.52
5581 5984 8.478877 TGCTGTTCCTGGTTTTTAAATAAGAAA 58.521 29.630 0.00 0.00 0.00 2.52
5582 5985 9.489084 GCTGTTCCTGGTTTTTAAATAAGAAAT 57.511 29.630 0.00 0.00 0.00 2.17
5604 6007 9.443283 GAAATATGTTACTCTTGCATAAGCTTG 57.557 33.333 9.86 0.00 42.74 4.01
5613 6016 4.221262 TCTTGCATAAGCTTGCCTTGAATT 59.779 37.500 9.86 0.00 42.06 2.17
5815 6218 7.441017 AGCAGTATTTTAGTTTGAAAATGGCA 58.559 30.769 0.00 0.00 38.98 4.92
5861 6264 5.237996 TGCTCTGTTTCATCTCTCTTGTTTG 59.762 40.000 0.00 0.00 0.00 2.93
6074 6477 5.080337 ACACAGTTCAGATAGGAAGAGACA 58.920 41.667 0.00 0.00 0.00 3.41
6204 6609 4.767000 AGTAGACATGGGGATGGAGATA 57.233 45.455 0.00 0.00 0.00 1.98
6288 6693 5.482006 TCATGAAATATGGGCATACTCGAG 58.518 41.667 11.84 11.84 0.00 4.04
6582 7014 1.529244 AGCAAGTCCACCAACAGGC 60.529 57.895 0.00 0.00 0.00 4.85
6588 7020 1.423541 AGTCCACCAACAGGCACAATA 59.576 47.619 0.00 0.00 0.00 1.90
6601 7033 5.047802 ACAGGCACAATAATCACAAAAGGAG 60.048 40.000 0.00 0.00 0.00 3.69
6645 7077 2.291540 CCCAATCTTGAAAGGGGCTACA 60.292 50.000 0.00 0.00 37.66 2.74
6673 7105 2.460669 GGGCAAATCATCAGGGAAAGT 58.539 47.619 0.00 0.00 0.00 2.66
6882 7314 4.599041 TGGTAAAGGTGGAAGGAATGATG 58.401 43.478 0.00 0.00 0.00 3.07
6968 7400 0.392729 AGGATGACAAGAGCAGCAGC 60.393 55.000 0.00 0.00 42.56 5.25
6970 7402 0.727970 GATGACAAGAGCAGCAGCAG 59.272 55.000 3.17 0.00 45.49 4.24
7003 7435 4.142730 GCATCACAGTGAAATCAGGAAGAC 60.143 45.833 7.50 0.00 0.00 3.01
7060 7492 3.026694 ACATTAGGGATTTGAGCTTGCC 58.973 45.455 0.00 0.00 0.00 4.52
7112 7544 2.553028 GGAGGGTCTCTCATTGCACAAA 60.553 50.000 1.23 0.00 44.19 2.83
7124 7556 2.626780 GCACAAACGGAGGAAGGGC 61.627 63.158 0.00 0.00 0.00 5.19
7182 7614 7.904558 ATCTGATCATTTGGTCACTAGACTA 57.095 36.000 0.00 0.00 44.36 2.59
7197 7629 5.517054 CACTAGACTAGCGACTTTGGATTTC 59.483 44.000 9.52 0.00 0.00 2.17
7209 7646 6.178239 ACTTTGGATTTCGGACGATAAAAG 57.822 37.500 0.00 4.83 0.00 2.27
7210 7647 5.935789 ACTTTGGATTTCGGACGATAAAAGA 59.064 36.000 15.39 0.00 0.00 2.52
7211 7648 6.428771 ACTTTGGATTTCGGACGATAAAAGAA 59.571 34.615 15.39 1.29 0.00 2.52
7212 7649 6.804770 TTGGATTTCGGACGATAAAAGAAA 57.195 33.333 0.00 0.00 35.64 2.52
7213 7650 6.804770 TGGATTTCGGACGATAAAAGAAAA 57.195 33.333 0.00 0.00 34.97 2.29
7215 7652 7.247728 TGGATTTCGGACGATAAAAGAAAATG 58.752 34.615 0.00 0.00 34.97 2.32
7216 7653 7.094549 TGGATTTCGGACGATAAAAGAAAATGT 60.095 33.333 0.00 0.00 34.97 2.71
7217 7654 7.218204 GGATTTCGGACGATAAAAGAAAATGTG 59.782 37.037 0.00 0.00 34.97 3.21
7218 7655 6.788684 TTCGGACGATAAAAGAAAATGTGA 57.211 33.333 0.00 0.00 0.00 3.58
7219 7656 6.978343 TCGGACGATAAAAGAAAATGTGAT 57.022 33.333 0.00 0.00 0.00 3.06
7220 7657 8.481974 TTCGGACGATAAAAGAAAATGTGATA 57.518 30.769 0.00 0.00 0.00 2.15
7221 7658 8.657074 TCGGACGATAAAAGAAAATGTGATAT 57.343 30.769 0.00 0.00 0.00 1.63
7222 7659 9.104965 TCGGACGATAAAAGAAAATGTGATATT 57.895 29.630 0.00 0.00 0.00 1.28
7292 7729 6.183360 TGCTTTCTTCTCCTTTTCTTGTCTTG 60.183 38.462 0.00 0.00 0.00 3.02
7318 7756 5.335504 CCTCTTTGCTGATGAGGTTCTTTTC 60.336 44.000 11.81 0.00 42.17 2.29
7368 7823 9.546909 CAGTGCTAATTTAGAGTTGTTTACATG 57.453 33.333 7.63 0.00 0.00 3.21
7405 7860 2.514803 CCTGGAATTCCACCGACTTTT 58.485 47.619 23.63 0.00 42.01 2.27
7448 7906 5.775686 TGAATGAAAAGGCACATCTTCAAG 58.224 37.500 0.00 0.00 31.94 3.02
7511 8056 2.031682 CGATCCTCCGGAAATGCAATTC 60.032 50.000 5.23 5.92 33.67 2.17
7563 8108 1.617755 CTTCGCTCGCTCGCTTTCAA 61.618 55.000 0.00 0.00 0.00 2.69
7623 8168 2.828520 CAGTCAGTAGCTTCCTTCTCCA 59.171 50.000 0.00 0.00 0.00 3.86
7630 8175 3.133141 AGCTTCCTTCTCCACAAGTTC 57.867 47.619 0.00 0.00 0.00 3.01
7650 8195 7.181569 AGTTCCCTTTTCACAAGAATTTGAA 57.818 32.000 0.00 0.00 37.73 2.69
7670 8215 6.419980 TGAAAAACTTCCATTGCACTTTTG 57.580 33.333 0.00 0.00 0.00 2.44
7676 8247 5.486526 ACTTCCATTGCACTTTTGTTTTGA 58.513 33.333 0.00 0.00 0.00 2.69
7679 8250 5.728471 TCCATTGCACTTTTGTTTTGAGAA 58.272 33.333 0.00 0.00 0.00 2.87
7681 8252 6.822676 TCCATTGCACTTTTGTTTTGAGAAAT 59.177 30.769 0.00 0.00 0.00 2.17
7749 8320 1.465200 GCTAGCTACTAGGCGGGCTT 61.465 60.000 10.13 0.00 34.88 4.35
7751 8322 0.185416 TAGCTACTAGGCGGGCTTCT 59.815 55.000 10.13 2.69 36.40 2.85
7752 8323 1.068250 GCTACTAGGCGGGCTTCTG 59.932 63.158 10.13 3.44 0.00 3.02
7796 8409 1.887707 GCGTGGCATACCTACCTGC 60.888 63.158 0.00 0.00 36.63 4.85
7920 8545 0.250727 CGAGAGCAAACAAAGGGGGA 60.251 55.000 0.00 0.00 0.00 4.81
7921 8546 1.614317 CGAGAGCAAACAAAGGGGGAT 60.614 52.381 0.00 0.00 0.00 3.85
7922 8547 2.095461 GAGAGCAAACAAAGGGGGATC 58.905 52.381 0.00 0.00 0.00 3.36
7923 8548 1.186200 GAGCAAACAAAGGGGGATCC 58.814 55.000 1.92 1.92 0.00 3.36
7988 8613 3.172575 CGACTGCGCTGGTACGTG 61.173 66.667 18.98 0.00 34.88 4.49
8036 8672 2.563471 AGATACGTTTGAGAGGACGC 57.437 50.000 0.00 0.00 42.67 5.19
8042 8678 0.319641 GTTTGAGAGGACGCGGTTCT 60.320 55.000 12.47 10.20 0.00 3.01
8043 8679 0.038526 TTTGAGAGGACGCGGTTCTC 60.039 55.000 22.08 22.08 38.39 2.87
8044 8680 1.874345 TTGAGAGGACGCGGTTCTCC 61.874 60.000 24.33 16.91 38.87 3.71
8115 8785 1.522580 GTCTCTGGCCGATTCCTGC 60.523 63.158 0.00 0.00 0.00 4.85
8128 8798 0.315251 TTCCTGCGCAGATAGATCCG 59.685 55.000 38.06 18.60 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.876581 AGGAGGTTTGGGTGAAATGAC 58.123 47.619 0.00 0.00 0.00 3.06
37 38 4.142687 CGTGGGAAGGTAATTGTGTTGATC 60.143 45.833 0.00 0.00 0.00 2.92
38 39 3.756434 CGTGGGAAGGTAATTGTGTTGAT 59.244 43.478 0.00 0.00 0.00 2.57
39 40 3.142951 CGTGGGAAGGTAATTGTGTTGA 58.857 45.455 0.00 0.00 0.00 3.18
40 41 2.882137 ACGTGGGAAGGTAATTGTGTTG 59.118 45.455 0.00 0.00 0.00 3.33
55 70 1.516161 CTATGCATCATCCACGTGGG 58.484 55.000 33.40 19.06 35.41 4.61
88 103 9.883142 TCTGTTTTGAGTTTATTTTTGATTGGT 57.117 25.926 0.00 0.00 0.00 3.67
94 109 8.050170 GCGAGTTCTGTTTTGAGTTTATTTTTG 58.950 33.333 0.00 0.00 0.00 2.44
95 110 7.222031 GGCGAGTTCTGTTTTGAGTTTATTTTT 59.778 33.333 0.00 0.00 0.00 1.94
100 115 4.193090 TGGCGAGTTCTGTTTTGAGTTTA 58.807 39.130 0.00 0.00 0.00 2.01
101 116 3.013921 TGGCGAGTTCTGTTTTGAGTTT 58.986 40.909 0.00 0.00 0.00 2.66
118 133 1.740296 AACCGGATCGAGTTTGGCG 60.740 57.895 9.46 0.00 0.00 5.69
124 139 3.611766 AAATTCTCAACCGGATCGAGT 57.388 42.857 9.46 0.00 0.00 4.18
172 187 3.472652 TGGTTTCGTTATGTGTGAAGCT 58.527 40.909 0.00 0.00 0.00 3.74
182 197 2.361789 CGGGGACATTGGTTTCGTTAT 58.638 47.619 0.00 0.00 0.00 1.89
183 198 1.611148 CCGGGGACATTGGTTTCGTTA 60.611 52.381 0.00 0.00 0.00 3.18
484 499 2.721231 GTCGCCAAACAGCAGCAA 59.279 55.556 0.00 0.00 0.00 3.91
609 652 1.303643 CACCCAACCCAAGCTCTCC 60.304 63.158 0.00 0.00 0.00 3.71
616 659 4.939368 CGACGCCACCCAACCCAA 62.939 66.667 0.00 0.00 0.00 4.12
672 727 0.594602 CACAAGGCATCACCACACAG 59.405 55.000 0.00 0.00 43.14 3.66
675 730 3.762293 GCACAAGGCATCACCACA 58.238 55.556 0.00 0.00 43.14 4.17
761 823 2.204136 AGGCCCATCACAGGACCA 60.204 61.111 0.00 0.00 29.74 4.02
788 850 4.514577 CCCGAGCCTGCTACCGTG 62.515 72.222 0.00 0.00 0.00 4.94
807 869 5.048364 CCAAGTTGTTTCATTCCATTCCGTA 60.048 40.000 1.45 0.00 0.00 4.02
874 936 3.799432 TTCCTTAAGCTACAAGCCCAA 57.201 42.857 0.00 0.00 43.77 4.12
875 937 4.316025 AATTCCTTAAGCTACAAGCCCA 57.684 40.909 0.00 0.00 43.77 5.36
891 953 6.706746 CGTAGCAGCTTAACTTAGAAATTCC 58.293 40.000 0.00 0.00 0.00 3.01
911 976 0.798776 CCAGTTCCTTTGCAGCGTAG 59.201 55.000 0.00 0.00 0.00 3.51
912 977 0.605319 CCCAGTTCCTTTGCAGCGTA 60.605 55.000 0.00 0.00 0.00 4.42
913 978 1.898574 CCCAGTTCCTTTGCAGCGT 60.899 57.895 0.00 0.00 0.00 5.07
914 979 2.956987 CCCAGTTCCTTTGCAGCG 59.043 61.111 0.00 0.00 0.00 5.18
915 980 2.653115 GCCCAGTTCCTTTGCAGC 59.347 61.111 0.00 0.00 0.00 5.25
918 983 1.667722 CAAGGCCCAGTTCCTTTGC 59.332 57.895 0.00 0.00 41.73 3.68
937 1002 5.517322 TTTCTAGGGCTTTCTCTATCGAC 57.483 43.478 0.00 0.00 0.00 4.20
1280 1366 2.510238 CCTCTTCTTCCGCAGCCG 60.510 66.667 0.00 0.00 0.00 5.52
1281 1367 2.821810 GCCTCTTCTTCCGCAGCC 60.822 66.667 0.00 0.00 0.00 4.85
1282 1368 3.191539 CGCCTCTTCTTCCGCAGC 61.192 66.667 0.00 0.00 0.00 5.25
1283 1369 1.518133 CTCGCCTCTTCTTCCGCAG 60.518 63.158 0.00 0.00 0.00 5.18
1284 1370 2.573869 CTCGCCTCTTCTTCCGCA 59.426 61.111 0.00 0.00 0.00 5.69
1285 1371 2.202810 CCTCGCCTCTTCTTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
1286 1372 2.496817 CCCTCGCCTCTTCTTCCG 59.503 66.667 0.00 0.00 0.00 4.30
1287 1373 2.188207 GCCCTCGCCTCTTCTTCC 59.812 66.667 0.00 0.00 0.00 3.46
1404 1494 5.116882 GCGTATCCATTCTAGGTTTGAAGT 58.883 41.667 0.00 0.00 0.00 3.01
1408 1498 4.442706 AGTGCGTATCCATTCTAGGTTTG 58.557 43.478 0.00 0.00 0.00 2.93
1413 1503 2.293677 ACGGAGTGCGTATCCATTCTAG 59.706 50.000 8.33 0.00 42.51 2.43
1420 1510 2.857592 TAGAAACGGAGTGCGTATCC 57.142 50.000 11.01 2.64 45.00 2.59
1445 1537 0.311790 GGTGTGTGTGCAGGTTCATG 59.688 55.000 0.00 0.00 0.00 3.07
1455 1547 6.474819 TTATTACGAAATCAGGTGTGTGTG 57.525 37.500 0.00 0.00 0.00 3.82
1456 1548 7.011109 GCTATTATTACGAAATCAGGTGTGTGT 59.989 37.037 0.00 0.00 0.00 3.72
1457 1549 7.011016 TGCTATTATTACGAAATCAGGTGTGTG 59.989 37.037 0.00 0.00 0.00 3.82
1458 1550 7.045416 TGCTATTATTACGAAATCAGGTGTGT 58.955 34.615 0.00 0.00 0.00 3.72
1492 1587 1.339727 ACTTAAGCCGTCCCATGTTCC 60.340 52.381 1.29 0.00 0.00 3.62
1498 1593 2.303600 ACATACAACTTAAGCCGTCCCA 59.696 45.455 1.29 0.00 0.00 4.37
1499 1594 2.981898 ACATACAACTTAAGCCGTCCC 58.018 47.619 1.29 0.00 0.00 4.46
1502 1597 4.638304 AGACAACATACAACTTAAGCCGT 58.362 39.130 1.29 2.42 0.00 5.68
1503 1598 6.367969 AGTTAGACAACATACAACTTAAGCCG 59.632 38.462 1.29 0.00 37.10 5.52
1504 1599 7.386848 TCAGTTAGACAACATACAACTTAAGCC 59.613 37.037 1.29 0.00 37.10 4.35
1537 1633 0.396811 ACACCAACCTACCAGTGCTC 59.603 55.000 0.00 0.00 33.46 4.26
1544 1640 0.313987 GCAGCAAACACCAACCTACC 59.686 55.000 0.00 0.00 0.00 3.18
1550 1646 0.749818 TCGAAGGCAGCAAACACCAA 60.750 50.000 0.00 0.00 0.00 3.67
1555 1703 0.874390 TCACATCGAAGGCAGCAAAC 59.126 50.000 0.00 0.00 0.00 2.93
1576 1724 7.892778 TCGTTATGCTATTGTTAAGTGACAA 57.107 32.000 0.00 0.00 43.08 3.18
1598 1746 4.091509 CCGAGAACACTGGTAGAATTTTCG 59.908 45.833 0.00 0.00 0.00 3.46
1599 1747 5.235516 TCCGAGAACACTGGTAGAATTTTC 58.764 41.667 0.00 0.00 0.00 2.29
1600 1748 5.223449 TCCGAGAACACTGGTAGAATTTT 57.777 39.130 0.00 0.00 0.00 1.82
1606 1754 6.037172 CCAATAATTTCCGAGAACACTGGTAG 59.963 42.308 0.00 0.00 0.00 3.18
1617 1765 8.621532 TCAATCCTATTCCAATAATTTCCGAG 57.378 34.615 0.00 0.00 0.00 4.63
1636 1784 7.721399 TCCTCTTTGGCTTCTTATTATCAATCC 59.279 37.037 0.00 0.00 35.26 3.01
1665 1813 6.048509 GCTTCCTCTTCTTCTTCCTGATTAG 58.951 44.000 0.00 0.00 0.00 1.73
1682 1830 8.936070 TTTTTAAACCTAAACTTTGCTTCCTC 57.064 30.769 0.00 0.00 0.00 3.71
1683 1831 9.542462 GATTTTTAAACCTAAACTTTGCTTCCT 57.458 29.630 0.00 0.00 0.00 3.36
1684 1832 8.770828 GGATTTTTAAACCTAAACTTTGCTTCC 58.229 33.333 0.00 0.00 0.00 3.46
1702 1850 9.775854 TCTTTTTCATCAATGCTTGGATTTTTA 57.224 25.926 0.00 0.00 0.00 1.52
1726 1874 1.425066 TGGCAAGGACAATGGTCTTCT 59.575 47.619 0.00 0.00 43.77 2.85
1732 1880 1.843368 ACAGATGGCAAGGACAATGG 58.157 50.000 0.00 0.00 0.00 3.16
1768 1916 4.803329 AAGTATAACTCTAGTCCGGGGA 57.197 45.455 0.00 0.00 0.00 4.81
1778 1926 9.935241 CATGTGGAAGCATATAAGTATAACTCT 57.065 33.333 0.00 0.00 0.00 3.24
1798 1946 1.830279 AGGTGAACAGCATCATGTGG 58.170 50.000 6.76 0.00 32.52 4.17
1799 1947 3.127548 GGTAAGGTGAACAGCATCATGTG 59.872 47.826 6.76 0.00 32.52 3.21
1800 1948 3.347216 GGTAAGGTGAACAGCATCATGT 58.653 45.455 6.76 0.00 33.96 3.21
1853 2001 4.083110 CCAAGCATGAGTGTCCTTAAACAG 60.083 45.833 0.00 0.00 0.00 3.16
1858 2006 2.027192 GGACCAAGCATGAGTGTCCTTA 60.027 50.000 13.66 0.00 41.77 2.69
1891 2039 2.229792 GGACAGCCAGAATGTGTGAAA 58.770 47.619 0.00 0.00 0.00 2.69
1914 2062 8.486210 TCAAGAGGATGGGAATAAATATATCCG 58.514 37.037 0.00 0.00 39.18 4.18
1930 2079 7.924947 ACGCATATATGATGTATCAAGAGGATG 59.075 37.037 17.10 1.37 40.69 3.51
2037 2186 5.888982 ATCAGGACCCATTAGAACGTAAT 57.111 39.130 0.00 0.00 0.00 1.89
2068 2217 6.984474 TCGTTATACTGAAATAGCCCAAGAAG 59.016 38.462 0.00 0.00 0.00 2.85
2097 2246 1.537638 TCTTCTGTCTCGTCTCTGTGC 59.462 52.381 0.00 0.00 0.00 4.57
2118 2267 2.787956 ACATACTCCCATTCCCCATCA 58.212 47.619 0.00 0.00 0.00 3.07
2216 2365 5.187186 TGACTTAGTGGTTTATCCTCTGTCC 59.813 44.000 0.00 0.00 39.91 4.02
2257 2406 9.573133 AAAGAGACAACAAAACTTTATCACAAG 57.427 29.630 0.00 0.00 0.00 3.16
2333 2483 3.326006 TCTCTCTTCCTGCAAGACATTGT 59.674 43.478 0.00 0.00 36.08 2.71
2389 2539 1.898472 TCTCCTCTGAGAAGCAACAGG 59.102 52.381 6.17 0.00 44.62 4.00
2509 2659 4.067944 AGAAGTACATCCTTCCCTGTCT 57.932 45.455 0.00 0.00 41.45 3.41
2578 2729 6.863126 GTCATTACATTGGTGCAAATATAGGC 59.137 38.462 0.00 0.00 0.00 3.93
2600 2751 5.713389 TCCTACCGAGAAAATAACAGAGTCA 59.287 40.000 0.00 0.00 0.00 3.41
2618 2770 1.911057 GCAATGGGCCTTATCCTACC 58.089 55.000 4.53 0.00 36.11 3.18
2810 2962 7.770897 ACACAGAATAGTTCAGGATACCAATTC 59.229 37.037 0.00 0.00 37.17 2.17
2846 2998 4.097286 TGAGGGTGAACAACACTAAAAAGC 59.903 41.667 0.00 0.00 44.98 3.51
2856 3008 3.004734 CCATGAAAGTGAGGGTGAACAAC 59.995 47.826 0.00 0.00 0.00 3.32
2866 3018 7.323420 TGAGTATAACTGTCCATGAAAGTGAG 58.677 38.462 0.00 0.00 29.54 3.51
2895 3047 9.132923 CAGTGAGTAGGTCAGGAATAAGTATTA 57.867 37.037 0.00 0.00 35.13 0.98
2935 3088 3.808834 AACAAACCTAAAGGGAGGGAG 57.191 47.619 0.20 0.00 41.36 4.30
2937 3090 4.376225 TGTAACAAACCTAAAGGGAGGG 57.624 45.455 0.20 0.00 41.36 4.30
2940 3093 6.442541 TGAGATGTAACAAACCTAAAGGGA 57.557 37.500 0.20 0.00 40.27 4.20
3052 3210 9.793259 TTAGAACTAAATTCCACATTGAGAACT 57.207 29.630 0.00 0.00 38.16 3.01
3077 3235 8.729805 TGCATGGTTTTTCAAGAACTAAATTT 57.270 26.923 0.00 0.00 0.00 1.82
3078 3236 8.776470 CATGCATGGTTTTTCAAGAACTAAATT 58.224 29.630 19.40 0.00 0.00 1.82
3081 3239 5.695816 GCATGCATGGTTTTTCAAGAACTAA 59.304 36.000 27.34 0.00 0.00 2.24
3082 3240 5.010922 AGCATGCATGGTTTTTCAAGAACTA 59.989 36.000 25.20 0.00 34.35 2.24
3085 3243 4.059511 CAGCATGCATGGTTTTTCAAGAA 58.940 39.130 28.02 0.00 36.17 2.52
3086 3244 3.655486 CAGCATGCATGGTTTTTCAAGA 58.345 40.909 28.02 0.00 36.17 3.02
3196 3355 7.681679 TCTACCTATGGTTGTTCATTGTACAA 58.318 34.615 11.41 11.41 37.09 2.41
3260 3419 4.209080 GCAACAGGCACATTTTAACACTTC 59.791 41.667 0.00 0.00 43.97 3.01
3336 3495 4.707934 TGGAGAATGCATCAATGAACATGT 59.292 37.500 0.00 0.00 0.00 3.21
3368 3527 1.011451 GTCACTGCTTGCCTCGAGAC 61.011 60.000 15.71 1.72 0.00 3.36
3394 3553 3.747529 CCAATCAAATGAAACCAACTGGC 59.252 43.478 0.00 0.00 39.32 4.85
3467 3626 4.074259 ACATAGCAAATCTCAGCAACACA 58.926 39.130 0.00 0.00 0.00 3.72
3539 3699 6.039493 AGCTGCTTCATCAATAATTCTCAAGG 59.961 38.462 0.00 0.00 0.00 3.61
3762 3922 3.611113 CACGACCTATGAAGTAAACACGG 59.389 47.826 0.00 0.00 0.00 4.94
3782 3942 2.362077 ACCATTCAACTGCAACTTCCAC 59.638 45.455 0.00 0.00 0.00 4.02
3791 3951 4.866486 GGATCAAATCAACCATTCAACTGC 59.134 41.667 0.00 0.00 0.00 4.40
3834 3995 4.863131 CGTCTGTAAACTGGAGGATGTTAC 59.137 45.833 0.00 0.00 0.00 2.50
3892 4053 1.873591 AGAAATTCTGTGTGCACGTCC 59.126 47.619 13.13 3.09 0.00 4.79
3969 4130 3.686016 TGCCAGAGGGAAAATCAACTAC 58.314 45.455 0.00 0.00 35.59 2.73
3972 4133 1.203287 GCTGCCAGAGGGAAAATCAAC 59.797 52.381 0.00 0.00 35.59 3.18
3977 4138 0.700564 AGATGCTGCCAGAGGGAAAA 59.299 50.000 0.00 0.00 35.59 2.29
4037 4198 8.915813 ACTAATAACCAACTAACCTAACCCTA 57.084 34.615 0.00 0.00 0.00 3.53
4048 4210 7.622081 TCATCCTTGGAGACTAATAACCAACTA 59.378 37.037 0.00 0.00 37.46 2.24
4099 4261 6.719370 ACAAACATTCTTGAATTAGGCCACTA 59.281 34.615 5.01 0.00 0.00 2.74
4125 4287 6.428771 AGTTGTAGCAAACACATAACGGTAAT 59.571 34.615 0.00 0.00 38.00 1.89
4133 4295 8.785329 TGATTGATAGTTGTAGCAAACACATA 57.215 30.769 0.00 0.00 38.04 2.29
4195 4358 7.551262 TGTTAGTACACTTCACAAGTTCACATT 59.449 33.333 0.00 0.00 40.46 2.71
4198 4361 6.897259 TGTTAGTACACTTCACAAGTTCAC 57.103 37.500 0.00 0.00 40.46 3.18
4308 4472 9.476202 CTCACGATTTAACATATGTAATCTCCA 57.524 33.333 21.06 9.49 0.00 3.86
4350 4516 5.733091 GCATGCTTACGGCTCATGATTTAAA 60.733 40.000 11.37 0.00 39.80 1.52
4384 4550 8.993424 AGTCTCCTAATCACCAACACTAATAAT 58.007 33.333 0.00 0.00 0.00 1.28
4393 4559 6.258947 GCAGAATTAGTCTCCTAATCACCAAC 59.741 42.308 0.00 0.00 41.91 3.77
4435 4601 1.803334 TCAGTCCAAACCGTGCATAC 58.197 50.000 0.00 0.00 0.00 2.39
4448 4614 3.314357 GTGGTGTTGGTTACTTTCAGTCC 59.686 47.826 0.00 0.00 0.00 3.85
4469 4635 4.130118 GTTTGTCCTGATTGACTCACAGT 58.870 43.478 0.00 0.00 36.21 3.55
4564 4730 3.535629 CTGAGCTGGGGTGCGAACA 62.536 63.158 0.00 0.00 38.13 3.18
4570 4736 2.113774 TTGTGCTGAGCTGGGGTG 59.886 61.111 5.83 0.00 0.00 4.61
4577 4743 1.415374 CAATGCTTGTTGTGCTGAGC 58.585 50.000 0.00 0.00 35.74 4.26
4588 4754 3.871485 AGAGTAGAAGAGGCAATGCTTG 58.129 45.455 4.82 0.00 0.00 4.01
4670 4836 9.722317 ATTAGAGAGCCAGCCTAATAATACTAT 57.278 33.333 0.00 0.00 32.97 2.12
4680 4846 7.509318 TGAGTAAATTATTAGAGAGCCAGCCTA 59.491 37.037 0.00 0.00 0.00 3.93
4685 4851 8.090788 ACCTTGAGTAAATTATTAGAGAGCCA 57.909 34.615 0.00 0.00 0.00 4.75
4794 4963 1.456923 GCAAGTCCGCATTTGAAAAGC 59.543 47.619 0.00 0.00 0.00 3.51
4826 4995 4.446371 CATATTGAACTGGAGGTGAGGTC 58.554 47.826 0.00 0.00 0.00 3.85
5036 5207 2.568090 GCGCAATGGAACCACTGG 59.432 61.111 0.30 0.00 0.00 4.00
5150 5511 0.179215 GAAAACTCGTGCTGCATCCG 60.179 55.000 5.27 5.90 0.00 4.18
5335 5718 2.905075 TGCACATAGACATTTCCTCGG 58.095 47.619 0.00 0.00 0.00 4.63
5457 5840 6.266786 TCACAGTACTTGAGGAACATAACTCA 59.733 38.462 0.00 0.00 41.63 3.41
5458 5841 6.688578 TCACAGTACTTGAGGAACATAACTC 58.311 40.000 0.00 0.00 0.00 3.01
5459 5842 6.267928 ACTCACAGTACTTGAGGAACATAACT 59.732 38.462 25.51 9.65 44.19 2.24
5460 5843 6.456501 ACTCACAGTACTTGAGGAACATAAC 58.543 40.000 25.51 0.00 44.19 1.89
5461 5844 6.665992 ACTCACAGTACTTGAGGAACATAA 57.334 37.500 25.51 1.30 44.19 1.90
5462 5845 6.665992 AACTCACAGTACTTGAGGAACATA 57.334 37.500 25.51 1.79 44.19 2.29
5463 5846 5.552870 AACTCACAGTACTTGAGGAACAT 57.447 39.130 25.51 11.53 44.19 2.71
5464 5847 6.041637 ACATAACTCACAGTACTTGAGGAACA 59.958 38.462 25.51 14.81 44.19 3.18
5465 5848 6.366332 CACATAACTCACAGTACTTGAGGAAC 59.634 42.308 25.51 0.00 44.19 3.62
5466 5849 6.266786 TCACATAACTCACAGTACTTGAGGAA 59.733 38.462 25.51 18.11 44.19 3.36
5467 5850 5.773176 TCACATAACTCACAGTACTTGAGGA 59.227 40.000 25.51 18.25 44.19 3.71
5468 5851 6.025749 TCACATAACTCACAGTACTTGAGG 57.974 41.667 25.51 16.32 44.19 3.86
5469 5852 5.574830 GCTCACATAACTCACAGTACTTGAG 59.425 44.000 22.70 22.70 45.21 3.02
5470 5853 5.010617 TGCTCACATAACTCACAGTACTTGA 59.989 40.000 0.00 0.10 0.00 3.02
5471 5854 5.230182 TGCTCACATAACTCACAGTACTTG 58.770 41.667 0.00 0.00 0.00 3.16
5472 5855 5.243954 TCTGCTCACATAACTCACAGTACTT 59.756 40.000 0.00 0.00 0.00 2.24
5473 5856 4.767409 TCTGCTCACATAACTCACAGTACT 59.233 41.667 0.00 0.00 0.00 2.73
5474 5857 5.060662 TCTGCTCACATAACTCACAGTAC 57.939 43.478 0.00 0.00 0.00 2.73
5475 5858 5.722021 TTCTGCTCACATAACTCACAGTA 57.278 39.130 0.00 0.00 0.00 2.74
5476 5859 4.607293 TTCTGCTCACATAACTCACAGT 57.393 40.909 0.00 0.00 0.00 3.55
5477 5860 5.673068 GCAATTCTGCTCACATAACTCACAG 60.673 44.000 0.00 0.00 45.74 3.66
5478 5861 4.154737 GCAATTCTGCTCACATAACTCACA 59.845 41.667 0.00 0.00 45.74 3.58
5479 5862 4.656041 GCAATTCTGCTCACATAACTCAC 58.344 43.478 0.00 0.00 45.74 3.51
5495 5878 7.854916 GCATTCACAAGAATACTCTAGCAATTC 59.145 37.037 0.00 4.33 42.46 2.17
5498 5881 6.409704 AGCATTCACAAGAATACTCTAGCAA 58.590 36.000 0.00 0.00 42.46 3.91
5542 5925 3.584848 AGGAACAGCATCTAAGGTGAAGT 59.415 43.478 0.00 0.00 40.11 3.01
5576 5979 9.401058 AGCTTATGCAAGAGTAACATATTTCTT 57.599 29.630 3.16 0.00 42.74 2.52
5577 5980 8.970859 AGCTTATGCAAGAGTAACATATTTCT 57.029 30.769 3.16 0.00 42.74 2.52
5578 5981 9.443283 CAAGCTTATGCAAGAGTAACATATTTC 57.557 33.333 0.00 0.00 42.74 2.17
5579 5982 7.917505 GCAAGCTTATGCAAGAGTAACATATTT 59.082 33.333 5.50 0.00 45.70 1.40
5580 5983 7.420800 GCAAGCTTATGCAAGAGTAACATATT 58.579 34.615 5.50 0.00 45.70 1.28
5581 5984 6.963796 GCAAGCTTATGCAAGAGTAACATAT 58.036 36.000 5.50 0.00 45.70 1.78
5582 5985 6.363577 GCAAGCTTATGCAAGAGTAACATA 57.636 37.500 5.50 0.00 45.70 2.29
5583 5986 5.240713 GCAAGCTTATGCAAGAGTAACAT 57.759 39.130 5.50 0.00 45.70 2.71
5584 5987 4.685169 GCAAGCTTATGCAAGAGTAACA 57.315 40.909 5.50 0.00 45.70 2.41
5786 6189 8.629986 CATTTTCAAACTAAAATACTGCTCACG 58.370 33.333 0.00 0.00 37.03 4.35
5832 6235 5.659463 AGAGAGATGAAACAGAGCACATAC 58.341 41.667 0.00 0.00 0.00 2.39
6074 6477 5.080337 TGTACCTGTCATCAGAACTTCTCT 58.920 41.667 0.00 0.00 43.76 3.10
6204 6609 4.699735 TCTTGATGAATGCCGTTTATGTGT 59.300 37.500 0.00 0.00 0.00 3.72
6288 6693 4.057432 GCTGCAGATGGTTCTCTTCTATC 58.943 47.826 20.43 0.00 0.00 2.08
6582 7014 4.414852 CGGCTCCTTTTGTGATTATTGTG 58.585 43.478 0.00 0.00 0.00 3.33
6588 7020 1.614317 CCTCCGGCTCCTTTTGTGATT 60.614 52.381 0.00 0.00 0.00 2.57
6655 7087 2.231964 TGCACTTTCCCTGATGATTTGC 59.768 45.455 0.00 0.00 0.00 3.68
6968 7400 2.027377 ACTGTGATGCTTCTTCCTCCTG 60.027 50.000 0.88 0.00 0.00 3.86
6970 7402 2.027745 TCACTGTGATGCTTCTTCCTCC 60.028 50.000 6.36 0.00 0.00 4.30
7003 7435 1.280886 GCCATCATCGCTGTCGCTAG 61.281 60.000 0.00 0.00 35.26 3.42
7060 7492 3.343788 GACCGACTCCTCCACGCAG 62.344 68.421 0.00 0.00 0.00 5.18
7124 7556 2.525248 CGAATCATGACCACGGCGG 61.525 63.158 13.24 0.00 42.50 6.13
7182 7614 1.439679 GTCCGAAATCCAAAGTCGCT 58.560 50.000 0.00 0.00 33.46 4.93
7209 7646 8.436200 GCATCTACGGAGTAATATCACATTTTC 58.564 37.037 0.00 0.00 45.13 2.29
7210 7647 7.387948 GGCATCTACGGAGTAATATCACATTTT 59.612 37.037 0.00 0.00 45.13 1.82
7211 7648 6.874134 GGCATCTACGGAGTAATATCACATTT 59.126 38.462 0.00 0.00 45.13 2.32
7212 7649 6.014584 TGGCATCTACGGAGTAATATCACATT 60.015 38.462 0.00 0.00 45.13 2.71
7213 7650 5.480422 TGGCATCTACGGAGTAATATCACAT 59.520 40.000 0.00 0.00 45.13 3.21
7215 7652 5.047943 AGTGGCATCTACGGAGTAATATCAC 60.048 44.000 0.00 0.00 45.13 3.06
7216 7653 5.077564 AGTGGCATCTACGGAGTAATATCA 58.922 41.667 0.00 0.00 45.13 2.15
7217 7654 5.646577 AGTGGCATCTACGGAGTAATATC 57.353 43.478 0.00 0.00 45.13 1.63
7218 7655 5.125739 GCTAGTGGCATCTACGGAGTAATAT 59.874 44.000 0.00 0.00 41.29 1.28
7219 7656 4.458295 GCTAGTGGCATCTACGGAGTAATA 59.542 45.833 0.00 0.00 41.29 0.98
7220 7657 3.256136 GCTAGTGGCATCTACGGAGTAAT 59.744 47.826 0.00 0.00 41.29 1.89
7221 7658 2.621998 GCTAGTGGCATCTACGGAGTAA 59.378 50.000 0.00 0.00 41.29 2.24
7222 7659 2.158652 AGCTAGTGGCATCTACGGAGTA 60.159 50.000 0.00 0.00 43.06 2.59
7223 7660 1.033574 GCTAGTGGCATCTACGGAGT 58.966 55.000 0.00 0.00 42.86 3.85
7224 7661 1.268352 GAGCTAGTGGCATCTACGGAG 59.732 57.143 0.00 0.00 44.79 4.63
7225 7662 1.319541 GAGCTAGTGGCATCTACGGA 58.680 55.000 0.00 0.00 44.79 4.69
7226 7663 1.032794 TGAGCTAGTGGCATCTACGG 58.967 55.000 0.00 0.00 44.79 4.02
7227 7664 2.670479 CATGAGCTAGTGGCATCTACG 58.330 52.381 0.00 0.00 44.79 3.51
7318 7756 3.475566 TGCAAGAAATCTCTATCCGGG 57.524 47.619 0.00 0.00 0.00 5.73
7368 7823 2.034221 GGCTGGACCAAGGGTGAC 59.966 66.667 0.00 0.00 35.25 3.67
7405 7860 3.069289 CAGTAGCAAGTGTGATGAGCAA 58.931 45.455 0.00 0.00 0.00 3.91
7454 7912 2.358258 TCAGTTGGAGGGAAGGGAAAT 58.642 47.619 0.00 0.00 0.00 2.17
7511 8056 3.083997 CCCCTTCCCTCACCCGAG 61.084 72.222 0.00 0.00 39.16 4.63
7623 8168 7.310361 TCAAATTCTTGTGAAAAGGGAACTTGT 60.310 33.333 0.00 0.00 40.81 3.16
7650 8195 6.816134 AAACAAAAGTGCAATGGAAGTTTT 57.184 29.167 0.00 0.00 35.90 2.43
7670 8215 9.076596 GTGCAATGGAAGTATATTTCTCAAAAC 57.923 33.333 7.79 0.00 0.00 2.43
7679 8250 9.420118 TGGAATAAAGTGCAATGGAAGTATATT 57.580 29.630 0.00 0.00 0.00 1.28
7681 8252 8.815565 TTGGAATAAAGTGCAATGGAAGTATA 57.184 30.769 0.00 0.00 0.00 1.47
7749 8320 2.877097 TACAGAAATTGGGCTGCAGA 57.123 45.000 20.43 0.00 35.57 4.26
7751 8322 2.101783 CCATACAGAAATTGGGCTGCA 58.898 47.619 0.50 0.00 35.57 4.41
7752 8323 1.202452 GCCATACAGAAATTGGGCTGC 60.202 52.381 0.00 0.00 38.37 5.25
7829 8450 7.504924 TTTTTGAGGTGACTTGTTATACAGG 57.495 36.000 0.00 0.00 44.43 4.00
7934 8559 3.111484 TGCTTTCTCCCCCTTTGTTTTT 58.889 40.909 0.00 0.00 0.00 1.94
7935 8560 2.700371 CTGCTTTCTCCCCCTTTGTTTT 59.300 45.455 0.00 0.00 0.00 2.43
7936 8561 2.091333 TCTGCTTTCTCCCCCTTTGTTT 60.091 45.455 0.00 0.00 0.00 2.83
7937 8562 1.499007 TCTGCTTTCTCCCCCTTTGTT 59.501 47.619 0.00 0.00 0.00 2.83
7938 8563 1.149101 TCTGCTTTCTCCCCCTTTGT 58.851 50.000 0.00 0.00 0.00 2.83
7939 8564 2.373224 GATCTGCTTTCTCCCCCTTTG 58.627 52.381 0.00 0.00 0.00 2.77
7940 8565 1.065126 CGATCTGCTTTCTCCCCCTTT 60.065 52.381 0.00 0.00 0.00 3.11
7988 8613 2.476873 TCGAAGAGATAGAAGCACGC 57.523 50.000 0.00 0.00 0.00 5.34
7990 8615 5.009610 AGAGGAATCGAAGAGATAGAAGCAC 59.990 44.000 0.00 0.00 43.63 4.40
7991 8616 5.009510 CAGAGGAATCGAAGAGATAGAAGCA 59.990 44.000 0.00 0.00 43.63 3.91
7992 8617 5.009610 ACAGAGGAATCGAAGAGATAGAAGC 59.990 44.000 0.00 0.00 43.63 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.