Multiple sequence alignment - TraesCS5A01G422400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G422400 chr5A 100.000 6271 0 0 1 6271 608607254 608613524 0.000000e+00 11581.0
1 TraesCS5A01G422400 chr5A 95.455 154 7 0 6118 6271 608618901 608619054 4.860000e-61 246.0
2 TraesCS5A01G422400 chr5A 97.959 49 1 0 5113 5161 379978658 379978706 1.120000e-12 86.1
3 TraesCS5A01G422400 chr5B 94.802 3578 110 24 1530 5088 600493185 600496705 0.000000e+00 5507.0
4 TraesCS5A01G422400 chr5B 90.399 1552 79 36 1 1534 600491658 600493157 0.000000e+00 1977.0
5 TraesCS5A01G422400 chr5B 87.590 556 33 15 5148 5670 600496782 600497334 4.160000e-171 612.0
6 TraesCS5A01G422400 chr5B 81.588 277 28 10 5670 5942 600497395 600497652 2.290000e-49 207.0
7 TraesCS5A01G422400 chr5B 83.333 156 20 6 6118 6271 607880188 607880037 8.480000e-29 139.0
8 TraesCS5A01G422400 chr5B 78.481 158 26 8 6118 6271 10167392 10167545 5.170000e-16 97.1
9 TraesCS5A01G422400 chr5B 95.918 49 2 0 5116 5164 518467688 518467640 5.210000e-11 80.5
10 TraesCS5A01G422400 chr5D 95.680 2338 66 16 1525 3855 487884998 487887307 0.000000e+00 3725.0
11 TraesCS5A01G422400 chr5D 91.658 1846 63 42 3856 5667 487887506 487889294 0.000000e+00 2471.0
12 TraesCS5A01G422400 chr5D 92.104 1545 73 23 1 1534 487883467 487884973 0.000000e+00 2132.0
13 TraesCS5A01G422400 chr5D 85.533 394 24 17 5724 6103 487890452 487890826 1.280000e-101 381.0
14 TraesCS5A01G422400 chr4B 86.525 282 25 9 1625 1900 517972721 517972995 1.320000e-76 298.0
15 TraesCS5A01G422400 chr4B 94.340 53 3 0 5113 5165 169047583 169047531 1.450000e-11 82.4
16 TraesCS5A01G422400 chr2B 87.742 155 16 3 6118 6271 318176234 318176386 1.800000e-40 178.0
17 TraesCS5A01G422400 chr2B 91.667 60 5 0 5113 5172 54683989 54684048 4.030000e-12 84.2
18 TraesCS5A01G422400 chr6D 82.166 157 25 3 6117 6271 356730218 356730373 1.420000e-26 132.0
19 TraesCS5A01G422400 chrUn 81.935 155 25 3 6118 6271 112296989 112296837 1.830000e-25 128.0
20 TraesCS5A01G422400 chr4D 81.761 159 22 6 6117 6271 32023966 32024121 6.600000e-25 126.0
21 TraesCS5A01G422400 chr3B 79.245 159 24 9 6117 6271 169654967 169654814 1.110000e-17 102.0
22 TraesCS5A01G422400 chr3B 79.114 158 24 9 6118 6271 169649400 169649248 4.000000e-17 100.0
23 TraesCS5A01G422400 chr4A 92.308 65 3 2 5116 5180 357086151 357086089 2.410000e-14 91.6
24 TraesCS5A01G422400 chr1A 98.039 51 1 0 5116 5166 231964580 231964530 8.660000e-14 89.8
25 TraesCS5A01G422400 chr7D 96.078 51 2 0 5113 5163 546535940 546535890 4.030000e-12 84.2
26 TraesCS5A01G422400 chr7A 94.444 54 3 0 5113 5166 632345167 632345220 4.030000e-12 84.2
27 TraesCS5A01G422400 chr6A 94.545 55 0 3 5113 5167 238930016 238929965 1.450000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G422400 chr5A 608607254 608613524 6270 False 11581.00 11581 100.00000 1 6271 1 chr5A.!!$F2 6270
1 TraesCS5A01G422400 chr5B 600491658 600497652 5994 False 2075.75 5507 88.59475 1 5942 4 chr5B.!!$F2 5941
2 TraesCS5A01G422400 chr5D 487883467 487890826 7359 False 2177.25 3725 91.24375 1 6103 4 chr5D.!!$F1 6102

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 415 0.250901 AGCAACAGAGCCCGATTTGT 60.251 50.000 0.00 0.0 34.23 2.83 F
659 690 0.458543 AATCCACTAGCGCGTCACTG 60.459 55.000 8.43 0.0 0.00 3.66 F
835 868 1.933853 CGCTTCGTAGGGGAGAATTTG 59.066 52.381 0.00 0.0 0.00 2.32 F
2094 2166 2.037144 TCCTAGTTTCCTACCATCCGC 58.963 52.381 0.00 0.0 0.00 5.54 F
3175 3257 2.093306 TGCGTTCTCAATGTGGTAGG 57.907 50.000 0.00 0.0 0.00 3.18 F
5096 5420 0.095935 GCACACACGATGATCTGCAC 59.904 55.000 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1483 1.969923 TCCTTGGCCAGATTGGTTTTG 59.030 47.619 5.11 0.00 40.46 2.44 R
2094 2166 2.363711 TAGCGTATGGGCCTGCTTCG 62.364 60.000 15.97 9.72 38.82 3.79 R
2334 2406 2.710377 TCCAAACGAAGCTGCATACAT 58.290 42.857 1.02 0.00 0.00 2.29 R
4059 4344 0.035881 CAGAAAGCACAGGGAGAGCA 59.964 55.000 0.00 0.00 36.17 4.26 R
5168 5492 1.201965 CGAAGGCAGAAAAGTCGATGC 60.202 52.381 0.00 0.00 37.95 3.91 R
6131 7613 0.169009 GAAATTCAGCGACAGCCACC 59.831 55.000 0.00 0.00 46.67 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
401 415 0.250901 AGCAACAGAGCCCGATTTGT 60.251 50.000 0.00 0.00 34.23 2.83
404 418 2.545742 GCAACAGAGCCCGATTTGTTTT 60.546 45.455 0.00 0.00 31.84 2.43
405 419 3.308530 CAACAGAGCCCGATTTGTTTTC 58.691 45.455 0.00 0.00 31.84 2.29
406 420 2.863809 ACAGAGCCCGATTTGTTTTCT 58.136 42.857 0.00 0.00 0.00 2.52
417 431 4.672409 GATTTGTTTTCTAAGATGGGCCG 58.328 43.478 0.00 0.00 0.00 6.13
418 432 2.871096 TGTTTTCTAAGATGGGCCGT 57.129 45.000 0.00 0.00 0.00 5.68
419 433 3.985019 TGTTTTCTAAGATGGGCCGTA 57.015 42.857 0.00 0.00 0.00 4.02
420 434 4.289238 TGTTTTCTAAGATGGGCCGTAA 57.711 40.909 0.00 0.00 0.00 3.18
421 435 4.850680 TGTTTTCTAAGATGGGCCGTAAT 58.149 39.130 0.00 0.00 0.00 1.89
422 436 5.991861 TGTTTTCTAAGATGGGCCGTAATA 58.008 37.500 0.00 0.00 0.00 0.98
423 437 6.053005 TGTTTTCTAAGATGGGCCGTAATAG 58.947 40.000 0.00 4.57 0.00 1.73
424 438 3.955650 TCTAAGATGGGCCGTAATAGC 57.044 47.619 0.00 0.00 0.00 2.97
457 471 4.024984 TCTAGGGCTGGGCTGGGT 62.025 66.667 0.00 0.00 0.00 4.51
536 561 0.666374 GTTGGGTTTCGGTTCTGGTG 59.334 55.000 0.00 0.00 0.00 4.17
553 578 3.063084 GTCTCCGACCTGCTCCGT 61.063 66.667 0.00 0.00 0.00 4.69
554 579 2.750637 TCTCCGACCTGCTCCGTC 60.751 66.667 0.00 0.00 0.00 4.79
555 580 2.752238 CTCCGACCTGCTCCGTCT 60.752 66.667 0.00 0.00 0.00 4.18
556 581 2.750637 TCCGACCTGCTCCGTCTC 60.751 66.667 0.00 0.00 0.00 3.36
557 582 3.827898 CCGACCTGCTCCGTCTCC 61.828 72.222 0.00 0.00 0.00 3.71
558 583 4.180946 CGACCTGCTCCGTCTCCG 62.181 72.222 0.00 0.00 0.00 4.63
653 684 1.064296 AGACGAATCCACTAGCGCG 59.936 57.895 0.00 0.00 0.00 6.86
659 690 0.458543 AATCCACTAGCGCGTCACTG 60.459 55.000 8.43 0.00 0.00 3.66
736 767 3.908712 ATCTGGGGGAGGGTTGCCA 62.909 63.158 0.00 0.00 36.32 4.92
835 868 1.933853 CGCTTCGTAGGGGAGAATTTG 59.066 52.381 0.00 0.00 0.00 2.32
838 871 3.118519 GCTTCGTAGGGGAGAATTTGGTA 60.119 47.826 0.00 0.00 0.00 3.25
840 873 2.767960 TCGTAGGGGAGAATTTGGTACC 59.232 50.000 4.43 4.43 0.00 3.34
887 920 3.888583 CCGTCTTCTTAGGACTAGGAGT 58.111 50.000 0.00 0.00 0.00 3.85
895 928 4.463186 TCTTAGGACTAGGAGTGCTTGTTC 59.537 45.833 5.94 0.00 44.90 3.18
918 951 3.609853 TGGAGAATTCCCGTCAAATCTG 58.390 45.455 0.65 0.00 43.33 2.90
1140 1173 5.357742 TGTTCTCTGCTAATGGATGCTTA 57.642 39.130 0.00 0.00 0.00 3.09
1156 1189 7.098477 TGGATGCTTATGTTTTTGGAGATTTG 58.902 34.615 0.00 0.00 0.00 2.32
1179 1212 3.429207 TGTTTAATTCGCGTCATCGTTGA 59.571 39.130 5.77 0.00 39.49 3.18
1183 1216 7.167801 TGTTTAATTCGCGTCATCGTTGATATA 59.832 33.333 5.77 0.00 39.49 0.86
1290 1323 2.344741 GCATCAGGTACGTTTCGTTCTC 59.655 50.000 0.00 0.00 41.54 2.87
1308 1341 5.176958 CGTTCTCGTTGACCTTTTCTTGTAT 59.823 40.000 0.00 0.00 0.00 2.29
1309 1342 6.363473 GTTCTCGTTGACCTTTTCTTGTATG 58.637 40.000 0.00 0.00 0.00 2.39
1376 1412 6.987992 CCATTCTTCCCCAACATTTATGATTG 59.012 38.462 0.00 0.00 0.00 2.67
1402 1438 2.445427 TGTGTTGGGAATATGCCTGTG 58.555 47.619 0.00 0.00 0.00 3.66
1412 1448 5.104193 GGGAATATGCCTGTGGATGATAGAT 60.104 44.000 0.00 0.00 0.00 1.98
1602 1672 9.771534 ATAGTTTTATTTGCTTTGTTTTGGCTA 57.228 25.926 0.00 0.00 0.00 3.93
1787 1858 5.782893 TTTGTACAAGGTTCCATTTGGAG 57.217 39.130 8.56 0.00 46.36 3.86
1910 1982 7.701539 TGAGGTTGACTTGCATACAAATATT 57.298 32.000 0.00 0.00 34.74 1.28
1936 2008 7.815383 TGGAAGGTACCATCTGATATCAAAAT 58.185 34.615 15.94 0.82 34.77 1.82
2094 2166 2.037144 TCCTAGTTTCCTACCATCCGC 58.963 52.381 0.00 0.00 0.00 5.54
2334 2406 4.473444 ACTTTGCATCCTCCTTTTTCTGA 58.527 39.130 0.00 0.00 0.00 3.27
2367 2439 4.431416 TCGTTTGGATAAGTATGGCCAT 57.569 40.909 24.45 24.45 0.00 4.40
2522 2601 7.173907 AGTCTCCTTTTCAATCCATATTATGCG 59.826 37.037 0.00 0.00 0.00 4.73
2554 2633 4.210537 CCTCACTATATAAAAACCGTGGCG 59.789 45.833 0.00 0.00 0.00 5.69
2748 2828 8.464770 ACAACAACATTGATTAATTTGATCGG 57.535 30.769 0.00 0.00 0.00 4.18
2794 2874 7.798596 AATTTTATTTGTTGCCAACACATGA 57.201 28.000 17.26 8.07 41.97 3.07
2833 2913 4.813161 AGAATATTCGATGTGTGCTGGAAG 59.187 41.667 9.78 0.00 0.00 3.46
2934 3014 8.328758 ACTGGAAAGATCAAAGATATACCAACA 58.671 33.333 0.00 0.00 0.00 3.33
2967 3047 7.499321 AATGATTTCTGCAATGATCTCTCTC 57.501 36.000 0.00 0.00 0.00 3.20
2968 3048 6.236558 TGATTTCTGCAATGATCTCTCTCT 57.763 37.500 0.00 0.00 0.00 3.10
2978 3058 6.015180 GCAATGATCTCTCTCTCTCAGGTTAT 60.015 42.308 0.00 0.00 0.00 1.89
3013 3093 3.878778 AGGGCATCAGACATAGTTTCAC 58.121 45.455 0.00 0.00 0.00 3.18
3017 3097 4.093998 GGCATCAGACATAGTTTCACACAG 59.906 45.833 0.00 0.00 0.00 3.66
3040 3120 3.290710 ACCAAAATGAGCAGTCAACTGT 58.709 40.909 11.55 0.00 45.45 3.55
3049 3129 2.135933 GCAGTCAACTGTGTCCTGTAC 58.864 52.381 11.55 0.00 45.45 2.90
3090 3170 4.454504 TCGGCTTACTTCTTTGTTCATTCC 59.545 41.667 0.00 0.00 0.00 3.01
3091 3171 4.669197 CGGCTTACTTCTTTGTTCATTCCG 60.669 45.833 0.00 0.00 0.00 4.30
3092 3172 4.454504 GGCTTACTTCTTTGTTCATTCCGA 59.545 41.667 0.00 0.00 0.00 4.55
3093 3173 5.123979 GGCTTACTTCTTTGTTCATTCCGAT 59.876 40.000 0.00 0.00 0.00 4.18
3094 3174 6.349363 GGCTTACTTCTTTGTTCATTCCGATT 60.349 38.462 0.00 0.00 0.00 3.34
3095 3175 7.084486 GCTTACTTCTTTGTTCATTCCGATTT 58.916 34.615 0.00 0.00 0.00 2.17
3096 3176 7.595130 GCTTACTTCTTTGTTCATTCCGATTTT 59.405 33.333 0.00 0.00 0.00 1.82
3097 3177 8.795786 TTACTTCTTTGTTCATTCCGATTTTG 57.204 30.769 0.00 0.00 0.00 2.44
3175 3257 2.093306 TGCGTTCTCAATGTGGTAGG 57.907 50.000 0.00 0.00 0.00 3.18
3377 3460 4.815846 GTCAAACTTGCAATGGAAAATGGT 59.184 37.500 0.00 0.00 0.00 3.55
3874 4157 5.072055 CCAGTGGCATCATATGGTATTTCA 58.928 41.667 2.13 0.00 31.70 2.69
3928 4212 9.273016 TGATAAGTTAGAATGGATCGATTTTCC 57.727 33.333 4.32 0.00 0.00 3.13
4059 4344 5.247110 TCTCTTAAGTCTTGGTGCTGAGAAT 59.753 40.000 1.63 0.00 0.00 2.40
4369 4654 6.524239 CCATTGTTGTCAATAATGTTCAGACG 59.476 38.462 24.80 10.66 41.66 4.18
4372 4657 3.669536 TGTCAATAATGTTCAGACGGCA 58.330 40.909 0.00 0.00 32.08 5.69
4379 4664 1.159713 TGTTCAGACGGCAGCTTGTG 61.160 55.000 0.00 0.00 0.00 3.33
4419 4704 5.780282 GGAAATAATAAATAAGGCCCCTGCT 59.220 40.000 0.00 0.00 37.74 4.24
4431 4716 2.639839 GGCCCCTGCTGAAGAGAATATA 59.360 50.000 0.00 0.00 37.74 0.86
4432 4717 3.265479 GGCCCCTGCTGAAGAGAATATAT 59.735 47.826 0.00 0.00 37.74 0.86
4433 4718 4.512484 GCCCCTGCTGAAGAGAATATATC 58.488 47.826 0.00 0.00 33.53 1.63
4434 4719 4.753233 CCCCTGCTGAAGAGAATATATCG 58.247 47.826 0.00 0.00 0.00 2.92
4496 4781 0.600057 CAGCAGGCCAAAAGGAAGTC 59.400 55.000 5.01 0.00 0.00 3.01
4548 4834 4.074259 TGGTTGACTGGATCTGATTTGTG 58.926 43.478 0.00 0.00 0.00 3.33
4565 4851 2.293170 TGTGCACCAGATCAACGAAAA 58.707 42.857 15.69 0.00 0.00 2.29
4566 4852 2.290367 TGTGCACCAGATCAACGAAAAG 59.710 45.455 15.69 0.00 0.00 2.27
4657 4943 6.379133 AGACAATGTTGCCATCTGTTATTCAT 59.621 34.615 0.00 0.00 0.00 2.57
4739 5025 2.794350 GCCAACAAATCAGTTTTCCGTG 59.206 45.455 0.00 0.00 0.00 4.94
4821 5111 3.181471 CCATCTTGCTCTCGAAGTATGGT 60.181 47.826 0.00 0.00 30.93 3.55
4841 5131 3.565902 GGTATGCTCATCTGGTTTTAGGC 59.434 47.826 0.00 0.00 0.00 3.93
4922 5212 3.574396 TCACCATCAGAGAAGAAAGACGT 59.426 43.478 0.00 0.00 0.00 4.34
5061 5351 3.552294 GGCTTCAGTAATACTTCTGTCGC 59.448 47.826 0.00 0.00 33.89 5.19
5096 5420 0.095935 GCACACACGATGATCTGCAC 59.904 55.000 0.00 0.00 0.00 4.57
5110 5434 4.513318 TGATCTGCACGTTACATGAACAAA 59.487 37.500 0.00 0.00 37.99 2.83
5114 5438 2.719046 GCACGTTACATGAACAAACAGC 59.281 45.455 0.00 2.39 37.99 4.40
5117 5441 4.795795 CACGTTACATGAACAAACAGCAAA 59.204 37.500 0.00 0.00 37.99 3.68
5118 5442 5.287274 CACGTTACATGAACAAACAGCAAAA 59.713 36.000 0.00 0.00 37.99 2.44
5121 5445 6.840292 CGTTACATGAACAAACAGCAAAATTG 59.160 34.615 0.00 0.00 37.99 2.32
5122 5446 5.738118 ACATGAACAAACAGCAAAATTGG 57.262 34.783 0.00 0.00 0.00 3.16
5123 5447 4.035441 ACATGAACAAACAGCAAAATTGGC 59.965 37.500 0.00 0.00 0.00 4.52
5124 5448 3.603532 TGAACAAACAGCAAAATTGGCA 58.396 36.364 0.00 0.00 0.00 4.92
5125 5449 4.005650 TGAACAAACAGCAAAATTGGCAA 58.994 34.783 0.68 0.68 0.00 4.52
5126 5450 4.456911 TGAACAAACAGCAAAATTGGCAAA 59.543 33.333 3.01 0.00 0.00 3.68
5127 5451 5.048504 TGAACAAACAGCAAAATTGGCAAAA 60.049 32.000 3.01 0.00 0.00 2.44
5128 5452 5.579564 ACAAACAGCAAAATTGGCAAAAT 57.420 30.435 3.01 0.00 0.00 1.82
5130 5454 5.357596 ACAAACAGCAAAATTGGCAAAATCT 59.642 32.000 3.01 0.00 0.00 2.40
5131 5455 6.541641 ACAAACAGCAAAATTGGCAAAATCTA 59.458 30.769 3.01 0.00 0.00 1.98
5132 5456 6.790285 AACAGCAAAATTGGCAAAATCTAG 57.210 33.333 3.01 0.00 0.00 2.43
5133 5457 6.100404 ACAGCAAAATTGGCAAAATCTAGA 57.900 33.333 3.01 0.00 0.00 2.43
5134 5458 6.161381 ACAGCAAAATTGGCAAAATCTAGAG 58.839 36.000 3.01 0.00 0.00 2.43
5135 5459 6.161381 CAGCAAAATTGGCAAAATCTAGAGT 58.839 36.000 3.01 0.00 0.00 3.24
5136 5460 6.090358 CAGCAAAATTGGCAAAATCTAGAGTG 59.910 38.462 3.01 0.00 0.00 3.51
5137 5461 5.349543 GCAAAATTGGCAAAATCTAGAGTGG 59.650 40.000 3.01 0.00 0.00 4.00
5138 5462 4.725790 AATTGGCAAAATCTAGAGTGGC 57.274 40.909 3.01 16.21 37.09 5.01
5139 5463 2.877097 TGGCAAAATCTAGAGTGGCA 57.123 45.000 19.84 19.84 43.41 4.92
5140 5464 3.153369 TGGCAAAATCTAGAGTGGCAA 57.847 42.857 20.86 8.40 42.78 4.52
5141 5465 3.495331 TGGCAAAATCTAGAGTGGCAAA 58.505 40.909 20.86 7.34 42.78 3.68
5142 5466 3.894427 TGGCAAAATCTAGAGTGGCAAAA 59.106 39.130 20.86 5.26 42.78 2.44
5143 5467 4.343526 TGGCAAAATCTAGAGTGGCAAAAA 59.656 37.500 20.86 4.99 42.78 1.94
5144 5468 4.686091 GGCAAAATCTAGAGTGGCAAAAAC 59.314 41.667 17.47 0.63 36.61 2.43
5145 5469 5.288804 GCAAAATCTAGAGTGGCAAAAACA 58.711 37.500 11.01 0.00 0.00 2.83
5146 5470 5.752955 GCAAAATCTAGAGTGGCAAAAACAA 59.247 36.000 11.01 0.00 0.00 2.83
5147 5471 6.257630 GCAAAATCTAGAGTGGCAAAAACAAA 59.742 34.615 11.01 0.00 0.00 2.83
5148 5472 7.517259 GCAAAATCTAGAGTGGCAAAAACAAAG 60.517 37.037 11.01 0.00 0.00 2.77
5149 5473 6.715347 AATCTAGAGTGGCAAAAACAAAGT 57.285 33.333 0.00 0.00 0.00 2.66
5150 5474 6.715347 ATCTAGAGTGGCAAAAACAAAGTT 57.285 33.333 0.00 0.00 0.00 2.66
5151 5475 6.524101 TCTAGAGTGGCAAAAACAAAGTTT 57.476 33.333 0.00 0.00 0.00 2.66
5152 5476 6.930731 TCTAGAGTGGCAAAAACAAAGTTTT 58.069 32.000 2.26 2.26 0.00 2.43
5153 5477 7.033185 TCTAGAGTGGCAAAAACAAAGTTTTC 58.967 34.615 8.16 0.00 0.00 2.29
5154 5478 4.935205 AGAGTGGCAAAAACAAAGTTTTCC 59.065 37.500 8.16 7.10 0.00 3.13
5155 5479 4.006989 AGTGGCAAAAACAAAGTTTTCCC 58.993 39.130 8.16 11.39 0.00 3.97
5168 5492 7.726216 ACAAAGTTTTCCCTTCTTCTAATTGG 58.274 34.615 0.00 0.00 0.00 3.16
5261 5585 3.339141 GAGCTCAAAACCTAGAAGTGGG 58.661 50.000 9.40 0.00 0.00 4.61
5313 5641 1.330655 GCTACTAGCCAGCCTGGTGA 61.331 60.000 13.35 0.00 40.46 4.02
5493 5821 7.816640 AGTGGCAAGTATACAGTTTTGTTATG 58.183 34.615 5.50 0.00 38.76 1.90
5505 5833 6.363088 ACAGTTTTGTTATGAATGATGCAACG 59.637 34.615 0.00 0.00 32.28 4.10
5524 5852 2.434185 GAGGCGCCAACGATGTCA 60.434 61.111 31.54 0.00 43.93 3.58
5528 5856 1.087202 GGCGCCAACGATGTCATGTA 61.087 55.000 24.80 0.00 43.93 2.29
5532 5860 2.009774 GCCAACGATGTCATGTAGCTT 58.990 47.619 0.00 0.00 0.00 3.74
5533 5861 2.223112 GCCAACGATGTCATGTAGCTTG 60.223 50.000 0.00 0.00 0.00 4.01
5534 5862 3.002791 CCAACGATGTCATGTAGCTTGT 58.997 45.455 0.00 0.00 0.00 3.16
5535 5863 4.180817 CCAACGATGTCATGTAGCTTGTA 58.819 43.478 0.00 0.00 0.00 2.41
5536 5864 4.032900 CCAACGATGTCATGTAGCTTGTAC 59.967 45.833 0.00 0.00 0.00 2.90
5537 5865 4.720649 ACGATGTCATGTAGCTTGTACT 57.279 40.909 0.00 0.00 0.00 2.73
5538 5866 5.073311 ACGATGTCATGTAGCTTGTACTT 57.927 39.130 0.00 0.00 0.00 2.24
5540 5868 6.034591 ACGATGTCATGTAGCTTGTACTTAC 58.965 40.000 0.00 0.00 0.00 2.34
5541 5869 5.459107 CGATGTCATGTAGCTTGTACTTACC 59.541 44.000 0.00 0.00 0.00 2.85
5542 5870 5.731957 TGTCATGTAGCTTGTACTTACCA 57.268 39.130 0.00 0.00 0.00 3.25
5625 5981 5.454520 AGGGAATTAAAAGCGTAAACGTTG 58.545 37.500 0.00 0.00 42.22 4.10
5651 6007 3.325870 TGTATTGCTGTGTACTGACTGC 58.674 45.455 7.89 7.89 40.26 4.40
5697 6115 1.809133 TGGTGGTTGGTCTAGGTCAA 58.191 50.000 0.00 0.00 0.00 3.18
5721 6139 7.589574 AGTGGTTTTTGTTTCATTGTGTAAC 57.410 32.000 0.00 0.00 37.35 2.50
5738 7207 0.110486 AACACTAACACCCTGGCCTG 59.890 55.000 3.32 2.54 0.00 4.85
5753 7222 2.028130 CCTGAATCCGCTTGATGCC 58.972 57.895 0.00 0.00 38.78 4.40
5754 7223 1.450531 CCTGAATCCGCTTGATGCCC 61.451 60.000 0.00 0.00 38.78 5.36
5755 7224 0.749091 CTGAATCCGCTTGATGCCCA 60.749 55.000 0.00 0.00 38.78 5.36
5756 7225 0.323269 TGAATCCGCTTGATGCCCAA 60.323 50.000 0.00 0.00 38.78 4.12
5790 7259 1.593006 GAGCGAATACCACATGGAACG 59.407 52.381 4.53 5.81 38.94 3.95
5793 7262 1.021968 GAATACCACATGGAACGCCC 58.978 55.000 4.53 0.00 38.94 6.13
5795 7264 0.180406 ATACCACATGGAACGCCCTC 59.820 55.000 4.53 0.00 38.94 4.30
5847 7326 5.768752 TGTGGGTGGTACATAGTATCTGTA 58.231 41.667 0.00 0.00 44.52 2.74
5883 7365 1.067776 CGCTTGTAGAAGGGTCGACTT 60.068 52.381 16.46 2.10 37.36 3.01
5948 7430 7.323656 CACACGATTTTAGGTCTTCAATTTGAC 59.676 37.037 0.00 0.00 0.00 3.18
5951 7433 8.718734 ACGATTTTAGGTCTTCAATTTGACTAC 58.281 33.333 0.00 0.57 34.01 2.73
6016 7498 6.785191 TCATCGTCAAATGAAATTTCTAGCC 58.215 36.000 18.64 2.29 44.81 3.93
6022 7504 8.397906 CGTCAAATGAAATTTCTAGCCATAGAA 58.602 33.333 18.64 0.00 44.81 2.10
6079 7561 6.001460 AGTCAAATCGAAGACATAAAACCCA 58.999 36.000 15.44 0.00 42.51 4.51
6084 7566 4.331968 TCGAAGACATAAAACCCATTGCT 58.668 39.130 0.00 0.00 0.00 3.91
6093 7575 6.096846 ACATAAAACCCATTGCTTGACCTATC 59.903 38.462 0.00 0.00 0.00 2.08
6094 7576 4.322057 AAACCCATTGCTTGACCTATCT 57.678 40.909 0.00 0.00 0.00 1.98
6096 7578 5.450818 AACCCATTGCTTGACCTATCTAA 57.549 39.130 0.00 0.00 0.00 2.10
6097 7579 5.450818 ACCCATTGCTTGACCTATCTAAA 57.549 39.130 0.00 0.00 0.00 1.85
6099 7581 4.580580 CCCATTGCTTGACCTATCTAAACC 59.419 45.833 0.00 0.00 0.00 3.27
6100 7582 4.580580 CCATTGCTTGACCTATCTAAACCC 59.419 45.833 0.00 0.00 0.00 4.11
6101 7583 4.919774 TTGCTTGACCTATCTAAACCCA 57.080 40.909 0.00 0.00 0.00 4.51
6102 7584 4.919774 TGCTTGACCTATCTAAACCCAA 57.080 40.909 0.00 0.00 0.00 4.12
6103 7585 5.249780 TGCTTGACCTATCTAAACCCAAA 57.750 39.130 0.00 0.00 0.00 3.28
6104 7586 5.636123 TGCTTGACCTATCTAAACCCAAAA 58.364 37.500 0.00 0.00 0.00 2.44
6105 7587 5.710099 TGCTTGACCTATCTAAACCCAAAAG 59.290 40.000 0.00 0.00 0.00 2.27
6106 7588 5.125578 GCTTGACCTATCTAAACCCAAAAGG 59.874 44.000 0.00 0.00 43.78 3.11
6107 7589 6.457159 TTGACCTATCTAAACCCAAAAGGA 57.543 37.500 0.00 0.00 39.89 3.36
6108 7590 6.062258 TGACCTATCTAAACCCAAAAGGAG 57.938 41.667 0.00 0.00 39.89 3.69
6109 7591 5.045140 TGACCTATCTAAACCCAAAAGGAGG 60.045 44.000 0.00 0.00 39.89 4.30
6118 7600 1.609208 CCAAAAGGAGGGAGTGTGTG 58.391 55.000 0.00 0.00 0.00 3.82
6119 7601 1.142870 CCAAAAGGAGGGAGTGTGTGA 59.857 52.381 0.00 0.00 0.00 3.58
6120 7602 2.222027 CAAAAGGAGGGAGTGTGTGAC 58.778 52.381 0.00 0.00 0.00 3.67
6121 7603 1.507140 AAAGGAGGGAGTGTGTGACA 58.493 50.000 0.00 0.00 0.00 3.58
6122 7604 1.051812 AAGGAGGGAGTGTGTGACAG 58.948 55.000 0.00 0.00 0.00 3.51
6123 7605 0.833834 AGGAGGGAGTGTGTGACAGG 60.834 60.000 0.00 0.00 0.00 4.00
6124 7606 1.004440 GAGGGAGTGTGTGACAGGC 60.004 63.158 0.00 0.00 0.00 4.85
6125 7607 2.032681 GGGAGTGTGTGACAGGCC 59.967 66.667 0.00 0.00 0.00 5.19
6126 7608 2.032681 GGAGTGTGTGACAGGCCC 59.967 66.667 0.00 0.00 0.00 5.80
6127 7609 2.520536 GGAGTGTGTGACAGGCCCT 61.521 63.158 0.00 0.00 0.00 5.19
6128 7610 1.192146 GGAGTGTGTGACAGGCCCTA 61.192 60.000 0.00 0.00 0.00 3.53
6129 7611 0.247736 GAGTGTGTGACAGGCCCTAG 59.752 60.000 0.00 0.00 0.00 3.02
6130 7612 0.178932 AGTGTGTGACAGGCCCTAGA 60.179 55.000 0.00 0.00 0.00 2.43
6131 7613 0.247736 GTGTGTGACAGGCCCTAGAG 59.752 60.000 0.00 0.00 0.00 2.43
6132 7614 0.904865 TGTGTGACAGGCCCTAGAGG 60.905 60.000 0.00 0.00 39.47 3.69
6133 7615 0.905337 GTGTGACAGGCCCTAGAGGT 60.905 60.000 0.00 0.00 38.26 3.85
6134 7616 0.904865 TGTGACAGGCCCTAGAGGTG 60.905 60.000 0.00 0.00 38.26 4.00
6135 7617 1.306141 TGACAGGCCCTAGAGGTGG 60.306 63.158 0.00 0.00 38.26 4.61
6140 7622 2.904131 GCCCTAGAGGTGGCTGTC 59.096 66.667 0.84 0.00 44.46 3.51
6141 7623 3.082579 GCCCTAGAGGTGGCTGTCG 62.083 68.421 0.84 0.00 44.46 4.35
6142 7624 2.496817 CCTAGAGGTGGCTGTCGC 59.503 66.667 0.00 0.00 0.00 5.19
6143 7625 2.055042 CCTAGAGGTGGCTGTCGCT 61.055 63.158 0.00 0.00 36.09 4.93
6144 7626 1.140589 CTAGAGGTGGCTGTCGCTG 59.859 63.158 0.00 0.00 36.09 5.18
6145 7627 1.304134 TAGAGGTGGCTGTCGCTGA 60.304 57.895 0.00 0.00 36.09 4.26
6146 7628 0.898326 TAGAGGTGGCTGTCGCTGAA 60.898 55.000 0.00 0.00 36.09 3.02
6147 7629 1.078848 GAGGTGGCTGTCGCTGAAT 60.079 57.895 0.00 0.00 36.09 2.57
6148 7630 0.674895 GAGGTGGCTGTCGCTGAATT 60.675 55.000 0.00 0.00 36.09 2.17
6149 7631 0.250901 AGGTGGCTGTCGCTGAATTT 60.251 50.000 0.00 0.00 36.09 1.82
6150 7632 0.169009 GGTGGCTGTCGCTGAATTTC 59.831 55.000 0.00 0.00 36.09 2.17
6151 7633 1.160137 GTGGCTGTCGCTGAATTTCT 58.840 50.000 0.00 0.00 36.09 2.52
6152 7634 1.129437 GTGGCTGTCGCTGAATTTCTC 59.871 52.381 0.00 0.00 36.09 2.87
6153 7635 1.270785 TGGCTGTCGCTGAATTTCTCA 60.271 47.619 0.00 0.00 36.09 3.27
6154 7636 1.129437 GGCTGTCGCTGAATTTCTCAC 59.871 52.381 0.00 0.00 36.09 3.51
6155 7637 1.800586 GCTGTCGCTGAATTTCTCACA 59.199 47.619 0.00 0.00 0.00 3.58
6156 7638 2.417933 GCTGTCGCTGAATTTCTCACAT 59.582 45.455 0.00 0.00 0.00 3.21
6157 7639 3.727079 GCTGTCGCTGAATTTCTCACATG 60.727 47.826 0.00 0.00 0.00 3.21
6158 7640 3.663025 TGTCGCTGAATTTCTCACATGA 58.337 40.909 0.00 0.00 0.00 3.07
6159 7641 4.064388 TGTCGCTGAATTTCTCACATGAA 58.936 39.130 0.00 0.00 0.00 2.57
6160 7642 4.083855 TGTCGCTGAATTTCTCACATGAAC 60.084 41.667 0.00 0.00 0.00 3.18
6161 7643 4.064388 TCGCTGAATTTCTCACATGAACA 58.936 39.130 0.00 0.00 0.00 3.18
6162 7644 4.152938 TCGCTGAATTTCTCACATGAACAG 59.847 41.667 0.00 0.00 0.00 3.16
6163 7645 4.152938 CGCTGAATTTCTCACATGAACAGA 59.847 41.667 0.00 0.00 0.00 3.41
6164 7646 5.629097 GCTGAATTTCTCACATGAACAGAG 58.371 41.667 0.00 1.30 0.00 3.35
6165 7647 5.391736 GCTGAATTTCTCACATGAACAGAGG 60.392 44.000 0.00 0.00 0.00 3.69
6166 7648 5.868454 TGAATTTCTCACATGAACAGAGGA 58.132 37.500 0.00 0.00 0.00 3.71
6167 7649 6.298361 TGAATTTCTCACATGAACAGAGGAA 58.702 36.000 0.00 2.69 31.85 3.36
6168 7650 6.772233 TGAATTTCTCACATGAACAGAGGAAA 59.228 34.615 0.00 1.06 31.13 3.13
6169 7651 7.285172 TGAATTTCTCACATGAACAGAGGAAAA 59.715 33.333 0.00 0.18 31.13 2.29
6170 7652 6.377327 TTTCTCACATGAACAGAGGAAAAC 57.623 37.500 0.00 0.00 0.00 2.43
6171 7653 5.034852 TCTCACATGAACAGAGGAAAACA 57.965 39.130 0.00 0.00 0.00 2.83
6172 7654 5.059161 TCTCACATGAACAGAGGAAAACAG 58.941 41.667 0.00 0.00 0.00 3.16
6173 7655 5.034852 TCACATGAACAGAGGAAAACAGA 57.965 39.130 0.00 0.00 0.00 3.41
6174 7656 4.816385 TCACATGAACAGAGGAAAACAGAC 59.184 41.667 0.00 0.00 0.00 3.51
6175 7657 4.576053 CACATGAACAGAGGAAAACAGACA 59.424 41.667 0.00 0.00 0.00 3.41
6176 7658 5.066375 CACATGAACAGAGGAAAACAGACAA 59.934 40.000 0.00 0.00 0.00 3.18
6177 7659 5.829924 ACATGAACAGAGGAAAACAGACAAT 59.170 36.000 0.00 0.00 0.00 2.71
6178 7660 6.322201 ACATGAACAGAGGAAAACAGACAATT 59.678 34.615 0.00 0.00 0.00 2.32
6179 7661 6.773976 TGAACAGAGGAAAACAGACAATTT 57.226 33.333 0.00 0.00 0.00 1.82
6180 7662 6.563422 TGAACAGAGGAAAACAGACAATTTG 58.437 36.000 0.00 0.00 0.00 2.32
6181 7663 6.152661 TGAACAGAGGAAAACAGACAATTTGT 59.847 34.615 0.63 0.63 0.00 2.83
6182 7664 5.894807 ACAGAGGAAAACAGACAATTTGTG 58.105 37.500 6.80 0.00 0.00 3.33
6183 7665 5.418840 ACAGAGGAAAACAGACAATTTGTGT 59.581 36.000 6.80 0.00 45.74 3.72
6184 7666 5.745294 CAGAGGAAAACAGACAATTTGTGTG 59.255 40.000 21.34 21.34 45.86 3.82
6185 7667 5.009854 AGGAAAACAGACAATTTGTGTGG 57.990 39.130 25.11 11.39 44.84 4.17
6186 7668 4.709397 AGGAAAACAGACAATTTGTGTGGA 59.291 37.500 25.11 0.00 44.84 4.02
6187 7669 5.186797 AGGAAAACAGACAATTTGTGTGGAA 59.813 36.000 25.11 0.00 44.84 3.53
6188 7670 6.048509 GGAAAACAGACAATTTGTGTGGAAT 58.951 36.000 25.11 13.43 44.84 3.01
6189 7671 6.538381 GGAAAACAGACAATTTGTGTGGAATT 59.462 34.615 25.11 17.64 44.84 2.17
6190 7672 7.065683 GGAAAACAGACAATTTGTGTGGAATTT 59.934 33.333 25.11 21.33 44.84 1.82
6191 7673 7.920160 AAACAGACAATTTGTGTGGAATTTT 57.080 28.000 25.11 15.65 44.84 1.82
6192 7674 6.907206 ACAGACAATTTGTGTGGAATTTTG 57.093 33.333 25.11 3.87 44.84 2.44
6193 7675 6.638610 ACAGACAATTTGTGTGGAATTTTGA 58.361 32.000 25.11 0.00 44.84 2.69
6194 7676 6.757947 ACAGACAATTTGTGTGGAATTTTGAG 59.242 34.615 25.11 2.65 44.84 3.02
6195 7677 6.979817 CAGACAATTTGTGTGGAATTTTGAGA 59.020 34.615 16.69 0.00 41.96 3.27
6196 7678 7.654520 CAGACAATTTGTGTGGAATTTTGAGAT 59.345 33.333 16.69 0.00 41.96 2.75
6197 7679 7.869429 AGACAATTTGTGTGGAATTTTGAGATC 59.131 33.333 6.80 0.00 41.96 2.75
6198 7680 6.642131 ACAATTTGTGTGGAATTTTGAGATCG 59.358 34.615 0.15 0.00 39.72 3.69
6199 7681 6.573664 ATTTGTGTGGAATTTTGAGATCGA 57.426 33.333 0.00 0.00 0.00 3.59
6200 7682 6.573664 TTTGTGTGGAATTTTGAGATCGAT 57.426 33.333 0.00 0.00 0.00 3.59
6201 7683 6.573664 TTGTGTGGAATTTTGAGATCGATT 57.426 33.333 0.00 0.00 0.00 3.34
6202 7684 6.182039 TGTGTGGAATTTTGAGATCGATTC 57.818 37.500 0.00 0.00 0.00 2.52
6203 7685 5.163864 TGTGTGGAATTTTGAGATCGATTCG 60.164 40.000 0.00 0.00 31.03 3.34
6204 7686 4.935205 TGTGGAATTTTGAGATCGATTCGT 59.065 37.500 5.89 0.00 31.03 3.85
6205 7687 5.411361 TGTGGAATTTTGAGATCGATTCGTT 59.589 36.000 5.89 0.00 31.03 3.85
6206 7688 5.960105 GTGGAATTTTGAGATCGATTCGTTC 59.040 40.000 5.89 7.47 31.03 3.95
6207 7689 5.641636 TGGAATTTTGAGATCGATTCGTTCA 59.358 36.000 16.93 11.53 31.03 3.18
6208 7690 6.183360 TGGAATTTTGAGATCGATTCGTTCAG 60.183 38.462 16.93 0.00 31.03 3.02
6209 7691 6.036083 GGAATTTTGAGATCGATTCGTTCAGA 59.964 38.462 16.93 8.00 31.03 3.27
6210 7692 7.254590 GGAATTTTGAGATCGATTCGTTCAGAT 60.255 37.037 16.93 9.73 31.03 2.90
6211 7693 6.575083 TTTTGAGATCGATTCGTTCAGATC 57.425 37.500 16.93 7.93 39.64 2.75
6213 7695 4.853268 TGAGATCGATTCGTTCAGATCTG 58.147 43.478 17.07 17.07 46.69 2.90
6214 7696 4.576463 TGAGATCGATTCGTTCAGATCTGA 59.424 41.667 21.67 21.67 46.69 3.27
6215 7697 5.066505 TGAGATCGATTCGTTCAGATCTGAA 59.933 40.000 30.05 30.05 46.69 3.02
6225 7707 3.533606 TCAGATCTGAAGCAAGGTAGC 57.466 47.619 23.17 0.00 36.53 3.58
6227 7709 4.281657 TCAGATCTGAAGCAAGGTAGCTA 58.718 43.478 23.17 0.00 45.89 3.32
6228 7710 4.340666 TCAGATCTGAAGCAAGGTAGCTAG 59.659 45.833 23.17 0.00 45.89 3.42
6229 7711 3.640967 AGATCTGAAGCAAGGTAGCTAGG 59.359 47.826 0.00 0.00 45.89 3.02
6230 7712 3.101643 TCTGAAGCAAGGTAGCTAGGA 57.898 47.619 0.00 0.00 45.89 2.94
6231 7713 3.647636 TCTGAAGCAAGGTAGCTAGGAT 58.352 45.455 0.00 0.00 45.89 3.24
6232 7714 4.033709 TCTGAAGCAAGGTAGCTAGGATT 58.966 43.478 0.00 0.00 45.89 3.01
6233 7715 4.471386 TCTGAAGCAAGGTAGCTAGGATTT 59.529 41.667 0.00 0.00 45.89 2.17
6234 7716 5.045578 TCTGAAGCAAGGTAGCTAGGATTTT 60.046 40.000 0.00 0.00 45.89 1.82
6235 7717 4.943705 TGAAGCAAGGTAGCTAGGATTTTG 59.056 41.667 0.00 0.00 45.89 2.44
6236 7718 3.891049 AGCAAGGTAGCTAGGATTTTGG 58.109 45.455 0.00 0.00 44.50 3.28
6237 7719 2.359214 GCAAGGTAGCTAGGATTTTGGC 59.641 50.000 0.00 0.00 0.00 4.52
6238 7720 2.952310 CAAGGTAGCTAGGATTTTGGCC 59.048 50.000 0.00 0.00 0.00 5.36
6239 7721 2.205342 AGGTAGCTAGGATTTTGGCCA 58.795 47.619 0.00 0.00 0.00 5.36
6240 7722 2.173569 AGGTAGCTAGGATTTTGGCCAG 59.826 50.000 5.11 0.00 0.00 4.85
6241 7723 1.950216 GTAGCTAGGATTTTGGCCAGC 59.050 52.381 5.11 2.86 32.97 4.85
6242 7724 0.396278 AGCTAGGATTTTGGCCAGCC 60.396 55.000 5.11 6.73 33.13 4.85
6243 7725 1.728490 GCTAGGATTTTGGCCAGCCG 61.728 60.000 5.11 0.00 39.42 5.52
6244 7726 1.077068 TAGGATTTTGGCCAGCCGG 60.077 57.895 5.11 0.00 39.42 6.13
6245 7727 1.567208 TAGGATTTTGGCCAGCCGGA 61.567 55.000 5.05 0.00 39.42 5.14
6246 7728 1.981853 GGATTTTGGCCAGCCGGAA 60.982 57.895 5.05 0.00 39.42 4.30
6247 7729 1.215382 GATTTTGGCCAGCCGGAAC 59.785 57.895 5.05 0.00 39.42 3.62
6248 7730 1.531739 GATTTTGGCCAGCCGGAACA 61.532 55.000 5.05 0.00 39.42 3.18
6249 7731 1.815817 ATTTTGGCCAGCCGGAACAC 61.816 55.000 5.05 0.00 39.42 3.32
6259 7741 4.728102 CGGAACACGGCGGCTACA 62.728 66.667 13.24 0.00 39.42 2.74
6260 7742 2.357760 GGAACACGGCGGCTACAA 60.358 61.111 13.24 0.00 0.00 2.41
6261 7743 2.388232 GGAACACGGCGGCTACAAG 61.388 63.158 13.24 0.00 0.00 3.16
6262 7744 2.358247 AACACGGCGGCTACAAGG 60.358 61.111 13.24 0.00 0.00 3.61
6263 7745 3.894547 AACACGGCGGCTACAAGGG 62.895 63.158 13.24 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
401 415 5.061179 GCTATTACGGCCCATCTTAGAAAA 58.939 41.667 0.00 0.00 0.00 2.29
404 418 2.565834 GGCTATTACGGCCCATCTTAGA 59.434 50.000 0.00 0.00 43.49 2.10
405 419 2.973945 GGCTATTACGGCCCATCTTAG 58.026 52.381 0.00 0.00 43.49 2.18
426 440 2.363795 TAGACCCAGGCCCGTCTG 60.364 66.667 22.03 5.47 39.64 3.51
427 441 2.042843 CTAGACCCAGGCCCGTCT 60.043 66.667 18.68 18.68 42.03 4.18
428 442 3.155167 CCTAGACCCAGGCCCGTC 61.155 72.222 0.00 2.62 0.00 4.79
439 453 3.483869 CCCAGCCCAGCCCTAGAC 61.484 72.222 0.00 0.00 0.00 2.59
480 499 4.514577 CTCCGCGTGCCCAGGTAG 62.515 72.222 4.92 0.00 0.00 3.18
485 504 2.055633 TATCTTCTCCGCGTGCCCA 61.056 57.895 4.92 0.00 0.00 5.36
486 505 1.591863 GTATCTTCTCCGCGTGCCC 60.592 63.158 4.92 0.00 0.00 5.36
636 667 1.201098 GACGCGCTAGTGGATTCGTC 61.201 60.000 5.73 15.16 39.25 4.20
637 668 1.226603 GACGCGCTAGTGGATTCGT 60.227 57.895 5.73 5.91 0.00 3.85
638 669 1.226575 TGACGCGCTAGTGGATTCG 60.227 57.895 5.73 2.49 0.00 3.34
640 671 0.458543 CAGTGACGCGCTAGTGGATT 60.459 55.000 5.73 0.00 0.00 3.01
641 672 1.139734 CAGTGACGCGCTAGTGGAT 59.860 57.895 5.73 0.00 0.00 3.41
642 673 2.566529 CAGTGACGCGCTAGTGGA 59.433 61.111 5.73 0.00 0.00 4.02
643 674 3.181967 GCAGTGACGCGCTAGTGG 61.182 66.667 5.73 0.00 0.00 4.00
644 675 3.181967 GGCAGTGACGCGCTAGTG 61.182 66.667 5.73 9.97 0.00 2.74
645 676 2.820767 GAAGGCAGTGACGCGCTAGT 62.821 60.000 5.73 0.00 0.00 2.57
736 767 3.006672 CGGATTTAAGCCGGCTGAT 57.993 52.632 33.60 23.89 44.87 2.90
747 780 0.461339 GGCAAGCTCCGTCGGATTTA 60.461 55.000 15.81 0.00 0.00 1.40
748 781 1.745489 GGCAAGCTCCGTCGGATTT 60.745 57.895 15.81 9.78 0.00 2.17
835 868 5.663456 TCAAATATACAACAGACCGGTACC 58.337 41.667 7.34 0.16 0.00 3.34
838 871 6.045072 TCTTCAAATATACAACAGACCGGT 57.955 37.500 6.92 6.92 0.00 5.28
840 873 7.337718 CGATTCTTCAAATATACAACAGACCG 58.662 38.462 0.00 0.00 0.00 4.79
887 920 3.091545 GGGAATTCTCCATGAACAAGCA 58.908 45.455 5.23 0.00 44.51 3.91
895 928 4.036027 CAGATTTGACGGGAATTCTCCATG 59.964 45.833 5.23 0.00 44.51 3.66
918 951 3.619038 CACAAAATCTAGCGGAAGACTCC 59.381 47.826 0.00 0.00 38.52 3.85
1156 1189 3.363788 ACGATGACGCGAATTAAACAC 57.636 42.857 15.93 0.00 43.96 3.32
1179 1212 5.858381 AGAATCGTCACTGCCAACATATAT 58.142 37.500 0.00 0.00 0.00 0.86
1183 1216 2.350522 GAGAATCGTCACTGCCAACAT 58.649 47.619 0.00 0.00 0.00 2.71
1290 1323 5.924475 AGTCATACAAGAAAAGGTCAACG 57.076 39.130 0.00 0.00 0.00 4.10
1308 1341 5.467735 CACAATAAGCTGCATATGCTAGTCA 59.532 40.000 27.13 11.12 40.22 3.41
1309 1342 5.698089 TCACAATAAGCTGCATATGCTAGTC 59.302 40.000 27.13 16.93 40.22 2.59
1376 1412 4.705023 AGGCATATTCCCAACACAAACTAC 59.295 41.667 0.00 0.00 0.00 2.73
1435 1471 6.079763 CAGATTGGTTTTGTATGTCGAAGTG 58.920 40.000 0.00 0.00 0.00 3.16
1447 1483 1.969923 TCCTTGGCCAGATTGGTTTTG 59.030 47.619 5.11 0.00 40.46 2.44
1590 1660 5.303078 TCTTAATGCTGGTAGCCAAAACAAA 59.697 36.000 0.00 0.00 41.51 2.83
1602 1672 4.885907 CAGGTTCATGATCTTAATGCTGGT 59.114 41.667 0.00 0.00 0.00 4.00
1714 1784 5.304686 ACTGACCTTCACATGGTAAAGAA 57.695 39.130 0.00 0.00 38.03 2.52
1767 1838 4.715534 TCTCCAAATGGAACCTTGTACA 57.284 40.909 3.35 0.00 44.91 2.90
1768 1839 4.640647 GGATCTCCAAATGGAACCTTGTAC 59.359 45.833 3.35 0.00 44.91 2.90
1769 1840 4.325030 GGGATCTCCAAATGGAACCTTGTA 60.325 45.833 3.35 0.00 44.91 2.41
1910 1982 6.823286 TTGATATCAGATGGTACCTTCCAA 57.177 37.500 21.10 14.64 41.09 3.53
1936 2008 8.674263 AATTGCATCCACTGAAATTAACAAAA 57.326 26.923 0.00 0.00 40.70 2.44
2028 2100 8.201554 TCTCAATCACAAGCAATAGACATAAC 57.798 34.615 0.00 0.00 0.00 1.89
2033 2105 6.902341 TGTTTCTCAATCACAAGCAATAGAC 58.098 36.000 0.00 0.00 0.00 2.59
2094 2166 2.363711 TAGCGTATGGGCCTGCTTCG 62.364 60.000 15.97 9.72 38.82 3.79
2234 2306 7.865707 AGAAACTACAATGCAACTTTACTGAG 58.134 34.615 0.00 0.00 0.00 3.35
2334 2406 2.710377 TCCAAACGAAGCTGCATACAT 58.290 42.857 1.02 0.00 0.00 2.29
2367 2439 7.614192 TCAGACAAGTACTCAGTACCAATGATA 59.386 37.037 11.60 0.00 39.58 2.15
2554 2633 5.485662 ACAGAAAATAACGATTAGCAGCC 57.514 39.130 0.00 0.00 0.00 4.85
2746 2826 3.347958 AACTACACAACATGTTTGCCG 57.652 42.857 8.77 0.00 43.19 5.69
2748 2828 8.574196 AATTTCTAACTACACAACATGTTTGC 57.426 30.769 8.77 0.00 43.19 3.68
2788 2868 8.948631 TTCTAGGCTTCTAGTTAAATCATGTG 57.051 34.615 0.00 0.00 40.90 3.21
2926 3006 9.039165 AGAAATCATTTCTCCATTTGTTGGTAT 57.961 29.630 6.83 0.00 46.62 2.73
2934 3014 7.617225 TCATTGCAGAAATCATTTCTCCATTT 58.383 30.769 9.87 0.00 46.62 2.32
2938 3018 7.013464 AGAGATCATTGCAGAAATCATTTCTCC 59.987 37.037 9.87 1.45 46.62 3.71
2950 3030 4.534797 TGAGAGAGAGAGATCATTGCAGA 58.465 43.478 0.00 0.00 0.00 4.26
2963 3043 5.867903 ACCAATGATAACCTGAGAGAGAG 57.132 43.478 0.00 0.00 0.00 3.20
2967 3047 7.118496 AGTTCTACCAATGATAACCTGAGAG 57.882 40.000 0.00 0.00 0.00 3.20
2968 3048 7.287927 CCTAGTTCTACCAATGATAACCTGAGA 59.712 40.741 0.00 0.00 0.00 3.27
2978 3058 4.037222 TGATGCCCTAGTTCTACCAATGA 58.963 43.478 0.00 0.00 0.00 2.57
3013 3093 2.227388 GACTGCTCATTTTGGTCCTGTG 59.773 50.000 0.00 0.00 0.00 3.66
3017 3097 2.887152 AGTTGACTGCTCATTTTGGTCC 59.113 45.455 0.00 0.00 0.00 4.46
3040 3120 4.321750 GCTGCAACTACTAAGTACAGGACA 60.322 45.833 0.00 0.00 39.08 4.02
3049 3129 2.668457 CCGACAAGCTGCAACTACTAAG 59.332 50.000 1.02 0.00 0.00 2.18
3157 3238 1.732259 CACCTACCACATTGAGAACGC 59.268 52.381 0.00 0.00 0.00 4.84
3225 3308 6.685527 TTACATGCAGAACAACTAAACACA 57.314 33.333 0.00 0.00 0.00 3.72
3236 3319 5.152097 GCATCAGCATATTACATGCAGAAC 58.848 41.667 11.46 3.02 46.77 3.01
3377 3460 3.695830 AAACTTACTCGGCATCCTTCA 57.304 42.857 0.00 0.00 0.00 3.02
3480 3563 4.020543 ACACCTGTAAAGTTTGAAGCCAA 58.979 39.130 0.00 0.00 0.00 4.52
3741 3826 5.240891 CCACAGTTCGGATATATGCTCAAT 58.759 41.667 2.53 0.00 0.00 2.57
3758 3843 7.120051 CCTATATGACTATACCTAGCCACAGT 58.880 42.308 0.00 0.00 0.00 3.55
3874 4157 2.917713 TACCAATGAAAGGCCCATGT 57.082 45.000 0.00 0.00 0.00 3.21
3928 4212 9.831737 CATAAAGAAATGTAAACAGACCTCAAG 57.168 33.333 0.00 0.00 0.00 3.02
4059 4344 0.035881 CAGAAAGCACAGGGAGAGCA 59.964 55.000 0.00 0.00 36.17 4.26
4282 4567 1.877637 TGAATGTCCCACTTGTGTCG 58.122 50.000 0.00 0.00 0.00 4.35
4369 4654 1.592400 GTTGCAACCACAAGCTGCC 60.592 57.895 19.15 0.00 35.13 4.85
4372 4657 2.985957 AAATGTTGCAACCACAAGCT 57.014 40.000 26.14 1.69 0.00 3.74
4379 4664 4.551702 ATTTCCCCTAAATGTTGCAACC 57.448 40.909 26.14 9.39 36.41 3.77
4463 4748 2.554142 CCTGCTGATGACTTCGCATAA 58.446 47.619 7.80 0.00 34.80 1.90
4466 4751 1.742880 GCCTGCTGATGACTTCGCA 60.743 57.895 0.00 7.33 34.37 5.10
4496 4781 7.829211 TCATATAGGTTGACAGGAAAAAGGAAG 59.171 37.037 0.00 0.00 0.00 3.46
4506 4791 5.745227 ACCAACTTCATATAGGTTGACAGG 58.255 41.667 12.97 0.00 41.71 4.00
4548 4834 3.436704 TGATCTTTTCGTTGATCTGGTGC 59.563 43.478 0.00 0.00 39.63 5.01
4565 4851 1.817087 ATCTGGGGTGCAGATGATCT 58.183 50.000 0.00 0.00 37.93 2.75
4821 5111 3.459598 AGGCCTAAAACCAGATGAGCATA 59.540 43.478 1.29 0.00 0.00 3.14
4841 5131 4.925646 GCTGCAAAAGGAAAACAGATTAGG 59.074 41.667 0.00 0.00 0.00 2.69
4922 5212 6.759827 GGCGAGTTATGAAATGTAGGAAGTTA 59.240 38.462 0.00 0.00 0.00 2.24
5003 5293 7.093814 ACCAGCATAAGATAAAAAGCACAATCA 60.094 33.333 0.00 0.00 0.00 2.57
5061 5351 3.236816 GTGTGCAACTCGGAAAATCATG 58.763 45.455 0.00 0.00 38.04 3.07
5096 5420 5.940603 TTTTGCTGTTTGTTCATGTAACG 57.059 34.783 0.00 0.00 41.30 3.18
5110 5434 6.100404 TCTAGATTTTGCCAATTTTGCTGT 57.900 33.333 0.00 0.00 0.00 4.40
5114 5438 5.349543 GCCACTCTAGATTTTGCCAATTTTG 59.650 40.000 0.00 0.00 0.00 2.44
5117 5441 4.088634 TGCCACTCTAGATTTTGCCAATT 58.911 39.130 0.00 0.00 0.00 2.32
5118 5442 3.700538 TGCCACTCTAGATTTTGCCAAT 58.299 40.909 0.00 0.00 0.00 3.16
5121 5445 4.519540 TTTTGCCACTCTAGATTTTGCC 57.480 40.909 0.00 0.00 0.00 4.52
5122 5446 5.288804 TGTTTTTGCCACTCTAGATTTTGC 58.711 37.500 0.00 0.00 0.00 3.68
5123 5447 7.492344 ACTTTGTTTTTGCCACTCTAGATTTTG 59.508 33.333 0.00 0.00 0.00 2.44
5124 5448 7.555965 ACTTTGTTTTTGCCACTCTAGATTTT 58.444 30.769 0.00 0.00 0.00 1.82
5125 5449 7.112452 ACTTTGTTTTTGCCACTCTAGATTT 57.888 32.000 0.00 0.00 0.00 2.17
5126 5450 6.715347 ACTTTGTTTTTGCCACTCTAGATT 57.285 33.333 0.00 0.00 0.00 2.40
5127 5451 6.715347 AACTTTGTTTTTGCCACTCTAGAT 57.285 33.333 0.00 0.00 0.00 1.98
5128 5452 6.524101 AAACTTTGTTTTTGCCACTCTAGA 57.476 33.333 0.00 0.00 0.00 2.43
5130 5454 6.103330 GGAAAACTTTGTTTTTGCCACTCTA 58.897 36.000 9.36 0.00 32.30 2.43
5131 5455 4.935205 GGAAAACTTTGTTTTTGCCACTCT 59.065 37.500 9.36 0.00 32.30 3.24
5132 5456 5.216566 GGAAAACTTTGTTTTTGCCACTC 57.783 39.130 9.36 0.00 32.30 3.51
5137 5461 6.371548 AGAAGAAGGGAAAACTTTGTTTTTGC 59.628 34.615 9.36 0.00 36.39 3.68
5138 5462 7.905604 AGAAGAAGGGAAAACTTTGTTTTTG 57.094 32.000 9.36 0.00 0.00 2.44
5141 5465 9.599866 CAATTAGAAGAAGGGAAAACTTTGTTT 57.400 29.630 0.00 0.00 0.00 2.83
5142 5466 8.204160 CCAATTAGAAGAAGGGAAAACTTTGTT 58.796 33.333 0.00 0.00 0.00 2.83
5143 5467 7.686859 GCCAATTAGAAGAAGGGAAAACTTTGT 60.687 37.037 0.00 0.00 0.00 2.83
5144 5468 6.646653 GCCAATTAGAAGAAGGGAAAACTTTG 59.353 38.462 0.00 0.00 0.00 2.77
5145 5469 6.326323 TGCCAATTAGAAGAAGGGAAAACTTT 59.674 34.615 0.00 0.00 0.00 2.66
5146 5470 5.838521 TGCCAATTAGAAGAAGGGAAAACTT 59.161 36.000 0.00 0.00 0.00 2.66
5147 5471 5.393866 TGCCAATTAGAAGAAGGGAAAACT 58.606 37.500 0.00 0.00 0.00 2.66
5148 5472 5.722021 TGCCAATTAGAAGAAGGGAAAAC 57.278 39.130 0.00 0.00 0.00 2.43
5149 5473 5.125417 CGATGCCAATTAGAAGAAGGGAAAA 59.875 40.000 0.00 0.00 0.00 2.29
5150 5474 4.640201 CGATGCCAATTAGAAGAAGGGAAA 59.360 41.667 0.00 0.00 0.00 3.13
5151 5475 4.080582 TCGATGCCAATTAGAAGAAGGGAA 60.081 41.667 0.00 0.00 0.00 3.97
5152 5476 3.454447 TCGATGCCAATTAGAAGAAGGGA 59.546 43.478 0.00 0.00 0.00 4.20
5153 5477 3.561725 GTCGATGCCAATTAGAAGAAGGG 59.438 47.826 0.00 0.00 0.00 3.95
5154 5478 4.446371 AGTCGATGCCAATTAGAAGAAGG 58.554 43.478 0.00 0.00 0.00 3.46
5155 5479 6.428385 AAAGTCGATGCCAATTAGAAGAAG 57.572 37.500 0.00 0.00 0.00 2.85
5168 5492 1.201965 CGAAGGCAGAAAAGTCGATGC 60.202 52.381 0.00 0.00 37.95 3.91
5240 5564 3.008049 TCCCACTTCTAGGTTTTGAGCTC 59.992 47.826 6.82 6.82 0.00 4.09
5261 5585 2.203153 ATGCCCGGTTACCGCATC 60.203 61.111 19.48 9.53 46.86 3.91
5308 5636 1.412710 GACTGACTTGACTGGTCACCA 59.587 52.381 0.00 0.00 39.66 4.17
5309 5637 1.603172 CGACTGACTTGACTGGTCACC 60.603 57.143 2.65 0.00 39.66 4.02
5313 5641 0.311165 CGACGACTGACTTGACTGGT 59.689 55.000 0.00 0.00 0.00 4.00
5493 5821 1.729881 GCCTCCCGTTGCATCATTC 59.270 57.895 0.00 0.00 0.00 2.67
5505 5833 4.778143 ACATCGTTGGCGCCTCCC 62.778 66.667 29.70 14.09 38.14 4.30
5524 5852 5.950544 TCCATGGTAAGTACAAGCTACAT 57.049 39.130 12.58 0.00 0.00 2.29
5590 5946 7.384932 CGCTTTTAATTCCCTTTCAAAGTTGAT 59.615 33.333 0.00 0.00 37.00 2.57
5625 5981 2.932614 CAGTACACAGCAATACAGCTCC 59.067 50.000 0.00 0.00 44.54 4.70
5651 6007 3.748048 CACCCCGATGCTAACAGATTATG 59.252 47.826 0.00 0.00 0.00 1.90
5697 6115 7.117092 GTGTTACACAATGAAACAAAAACCACT 59.883 33.333 10.96 0.00 35.08 4.00
5721 6139 0.400213 TTCAGGCCAGGGTGTTAGTG 59.600 55.000 5.01 0.00 0.00 2.74
5738 7207 0.383231 CTTGGGCATCAAGCGGATTC 59.617 55.000 6.18 0.00 45.24 2.52
5753 7222 0.392998 CTCGGATGGGTTGGACTTGG 60.393 60.000 0.00 0.00 0.00 3.61
5754 7223 1.026718 GCTCGGATGGGTTGGACTTG 61.027 60.000 0.00 0.00 0.00 3.16
5755 7224 1.299976 GCTCGGATGGGTTGGACTT 59.700 57.895 0.00 0.00 0.00 3.01
5756 7225 2.990479 GCTCGGATGGGTTGGACT 59.010 61.111 0.00 0.00 0.00 3.85
5757 7226 2.511600 CGCTCGGATGGGTTGGAC 60.512 66.667 0.00 0.00 0.00 4.02
5758 7227 1.622607 ATTCGCTCGGATGGGTTGGA 61.623 55.000 0.00 0.00 0.00 3.53
5790 7259 2.119801 TGAGCAAATGAAGAGAGGGC 57.880 50.000 0.00 0.00 0.00 5.19
5793 7262 4.758674 TGGACTTTGAGCAAATGAAGAGAG 59.241 41.667 0.00 0.00 0.00 3.20
5795 7264 5.218139 GTTGGACTTTGAGCAAATGAAGAG 58.782 41.667 0.00 0.00 0.00 2.85
5856 7335 1.463444 CCCTTCTACAAGCGAAAACGG 59.537 52.381 0.00 0.00 0.00 4.44
5996 7478 7.919690 TCTATGGCTAGAAATTTCATTTGACG 58.080 34.615 19.99 2.92 30.90 4.35
6063 7545 4.701956 AGCAATGGGTTTTATGTCTTCG 57.298 40.909 0.00 0.00 0.00 3.79
6065 7547 5.279456 GGTCAAGCAATGGGTTTTATGTCTT 60.279 40.000 0.00 0.00 30.99 3.01
6070 7552 6.435164 AGATAGGTCAAGCAATGGGTTTTAT 58.565 36.000 0.00 0.00 30.99 1.40
6079 7561 5.450818 TGGGTTTAGATAGGTCAAGCAAT 57.549 39.130 0.00 0.00 0.00 3.56
6084 7566 6.457159 TCCTTTTGGGTTTAGATAGGTCAA 57.543 37.500 0.00 0.00 40.87 3.18
6093 7575 3.181433 ACACTCCCTCCTTTTGGGTTTAG 60.181 47.826 0.00 0.00 44.84 1.85
6094 7576 2.787035 ACACTCCCTCCTTTTGGGTTTA 59.213 45.455 0.00 0.00 44.84 2.01
6096 7578 1.133482 CACACTCCCTCCTTTTGGGTT 60.133 52.381 0.00 0.00 44.84 4.11
6097 7579 0.478507 CACACTCCCTCCTTTTGGGT 59.521 55.000 0.00 0.00 44.84 4.51
6099 7581 1.142870 TCACACACTCCCTCCTTTTGG 59.857 52.381 0.00 0.00 42.21 3.28
6100 7582 2.222027 GTCACACACTCCCTCCTTTTG 58.778 52.381 0.00 0.00 0.00 2.44
6101 7583 1.843851 TGTCACACACTCCCTCCTTTT 59.156 47.619 0.00 0.00 0.00 2.27
6102 7584 1.417890 CTGTCACACACTCCCTCCTTT 59.582 52.381 0.00 0.00 0.00 3.11
6103 7585 1.051812 CTGTCACACACTCCCTCCTT 58.948 55.000 0.00 0.00 0.00 3.36
6104 7586 0.833834 CCTGTCACACACTCCCTCCT 60.834 60.000 0.00 0.00 0.00 3.69
6105 7587 1.674057 CCTGTCACACACTCCCTCC 59.326 63.158 0.00 0.00 0.00 4.30
6106 7588 1.004440 GCCTGTCACACACTCCCTC 60.004 63.158 0.00 0.00 0.00 4.30
6107 7589 2.520536 GGCCTGTCACACACTCCCT 61.521 63.158 0.00 0.00 0.00 4.20
6108 7590 2.032681 GGCCTGTCACACACTCCC 59.967 66.667 0.00 0.00 0.00 4.30
6109 7591 1.192146 TAGGGCCTGTCACACACTCC 61.192 60.000 18.53 0.00 0.00 3.85
6110 7592 0.247736 CTAGGGCCTGTCACACACTC 59.752 60.000 18.53 0.00 0.00 3.51
6111 7593 0.178932 TCTAGGGCCTGTCACACACT 60.179 55.000 18.53 0.00 0.00 3.55
6112 7594 0.247736 CTCTAGGGCCTGTCACACAC 59.752 60.000 18.53 0.00 0.00 3.82
6113 7595 0.904865 CCTCTAGGGCCTGTCACACA 60.905 60.000 18.53 0.00 0.00 3.72
6114 7596 0.905337 ACCTCTAGGGCCTGTCACAC 60.905 60.000 18.53 0.00 40.27 3.82
6115 7597 0.904865 CACCTCTAGGGCCTGTCACA 60.905 60.000 18.53 0.00 40.27 3.58
6116 7598 1.617947 CCACCTCTAGGGCCTGTCAC 61.618 65.000 18.53 0.00 40.27 3.67
6117 7599 1.306141 CCACCTCTAGGGCCTGTCA 60.306 63.158 18.53 0.00 40.27 3.58
6118 7600 2.736826 GCCACCTCTAGGGCCTGTC 61.737 68.421 18.53 0.00 44.53 3.51
6119 7601 2.689034 GCCACCTCTAGGGCCTGT 60.689 66.667 18.53 1.49 44.53 4.00
6124 7606 3.082579 GCGACAGCCACCTCTAGGG 62.083 68.421 0.20 0.00 37.10 3.53
6125 7607 2.055042 AGCGACAGCCACCTCTAGG 61.055 63.158 0.00 0.00 46.67 3.02
6126 7608 1.140589 CAGCGACAGCCACCTCTAG 59.859 63.158 0.00 0.00 46.67 2.43
6127 7609 0.898326 TTCAGCGACAGCCACCTCTA 60.898 55.000 0.00 0.00 46.67 2.43
6128 7610 1.548357 ATTCAGCGACAGCCACCTCT 61.548 55.000 0.00 0.00 46.67 3.69
6129 7611 0.674895 AATTCAGCGACAGCCACCTC 60.675 55.000 0.00 0.00 46.67 3.85
6130 7612 0.250901 AAATTCAGCGACAGCCACCT 60.251 50.000 0.00 0.00 46.67 4.00
6131 7613 0.169009 GAAATTCAGCGACAGCCACC 59.831 55.000 0.00 0.00 46.67 4.61
6132 7614 1.129437 GAGAAATTCAGCGACAGCCAC 59.871 52.381 0.00 0.00 46.67 5.01
6133 7615 1.270785 TGAGAAATTCAGCGACAGCCA 60.271 47.619 0.00 0.00 46.67 4.75
6134 7616 1.129437 GTGAGAAATTCAGCGACAGCC 59.871 52.381 0.00 0.00 46.67 4.85
6135 7617 1.800586 TGTGAGAAATTCAGCGACAGC 59.199 47.619 0.00 0.00 45.58 4.40
6136 7618 3.681417 TCATGTGAGAAATTCAGCGACAG 59.319 43.478 0.00 0.00 36.21 3.51
6137 7619 3.663025 TCATGTGAGAAATTCAGCGACA 58.337 40.909 0.00 0.00 36.21 4.35
6138 7620 4.083855 TGTTCATGTGAGAAATTCAGCGAC 60.084 41.667 0.00 0.00 36.21 5.19
6139 7621 4.064388 TGTTCATGTGAGAAATTCAGCGA 58.936 39.130 0.00 0.00 36.21 4.93
6140 7622 4.152938 TCTGTTCATGTGAGAAATTCAGCG 59.847 41.667 0.00 0.00 36.21 5.18
6141 7623 5.391736 CCTCTGTTCATGTGAGAAATTCAGC 60.392 44.000 0.00 0.00 36.21 4.26
6142 7624 5.936372 TCCTCTGTTCATGTGAGAAATTCAG 59.064 40.000 0.00 0.00 36.21 3.02
6143 7625 5.868454 TCCTCTGTTCATGTGAGAAATTCA 58.132 37.500 0.00 0.00 0.00 2.57
6144 7626 6.808008 TTCCTCTGTTCATGTGAGAAATTC 57.192 37.500 0.00 0.00 0.00 2.17
6145 7627 7.068593 TGTTTTCCTCTGTTCATGTGAGAAATT 59.931 33.333 0.00 0.00 0.00 1.82
6146 7628 6.547141 TGTTTTCCTCTGTTCATGTGAGAAAT 59.453 34.615 0.00 0.00 0.00 2.17
6147 7629 5.885352 TGTTTTCCTCTGTTCATGTGAGAAA 59.115 36.000 0.00 0.00 0.00 2.52
6148 7630 5.436175 TGTTTTCCTCTGTTCATGTGAGAA 58.564 37.500 0.00 0.00 0.00 2.87
6149 7631 5.034852 TGTTTTCCTCTGTTCATGTGAGA 57.965 39.130 0.00 0.00 0.00 3.27
6150 7632 5.049818 GTCTGTTTTCCTCTGTTCATGTGAG 60.050 44.000 0.00 0.00 0.00 3.51
6151 7633 4.816385 GTCTGTTTTCCTCTGTTCATGTGA 59.184 41.667 0.00 0.00 0.00 3.58
6152 7634 4.576053 TGTCTGTTTTCCTCTGTTCATGTG 59.424 41.667 0.00 0.00 0.00 3.21
6153 7635 4.780815 TGTCTGTTTTCCTCTGTTCATGT 58.219 39.130 0.00 0.00 0.00 3.21
6154 7636 5.756195 TTGTCTGTTTTCCTCTGTTCATG 57.244 39.130 0.00 0.00 0.00 3.07
6155 7637 6.966534 AATTGTCTGTTTTCCTCTGTTCAT 57.033 33.333 0.00 0.00 0.00 2.57
6156 7638 6.152661 ACAAATTGTCTGTTTTCCTCTGTTCA 59.847 34.615 0.00 0.00 0.00 3.18
6157 7639 6.473455 CACAAATTGTCTGTTTTCCTCTGTTC 59.527 38.462 0.00 0.00 0.00 3.18
6158 7640 6.071391 ACACAAATTGTCTGTTTTCCTCTGTT 60.071 34.615 0.00 0.00 29.79 3.16
6159 7641 5.418840 ACACAAATTGTCTGTTTTCCTCTGT 59.581 36.000 0.00 0.00 29.79 3.41
6160 7642 5.745294 CACACAAATTGTCTGTTTTCCTCTG 59.255 40.000 0.00 0.00 35.67 3.35
6161 7643 5.163519 CCACACAAATTGTCTGTTTTCCTCT 60.164 40.000 0.00 0.00 35.67 3.69
6162 7644 5.043248 CCACACAAATTGTCTGTTTTCCTC 58.957 41.667 0.00 0.00 35.67 3.71
6163 7645 4.709397 TCCACACAAATTGTCTGTTTTCCT 59.291 37.500 0.00 0.00 35.67 3.36
6164 7646 5.004922 TCCACACAAATTGTCTGTTTTCC 57.995 39.130 0.00 0.00 35.67 3.13
6165 7647 7.538303 AATTCCACACAAATTGTCTGTTTTC 57.462 32.000 0.00 0.00 35.67 2.29
6166 7648 7.920160 AAATTCCACACAAATTGTCTGTTTT 57.080 28.000 0.00 0.00 35.67 2.43
6167 7649 7.605691 TCAAAATTCCACACAAATTGTCTGTTT 59.394 29.630 0.00 0.00 35.67 2.83
6168 7650 7.102346 TCAAAATTCCACACAAATTGTCTGTT 58.898 30.769 0.00 0.00 35.67 3.16
6169 7651 6.638610 TCAAAATTCCACACAAATTGTCTGT 58.361 32.000 0.00 0.00 35.67 3.41
6170 7652 6.979817 TCTCAAAATTCCACACAAATTGTCTG 59.020 34.615 0.00 0.00 35.67 3.51
6171 7653 7.111247 TCTCAAAATTCCACACAAATTGTCT 57.889 32.000 0.00 0.00 35.67 3.41
6172 7654 7.148918 CGATCTCAAAATTCCACACAAATTGTC 60.149 37.037 0.00 0.00 35.67 3.18
6173 7655 6.642131 CGATCTCAAAATTCCACACAAATTGT 59.358 34.615 0.00 0.00 39.97 2.71
6174 7656 6.862608 TCGATCTCAAAATTCCACACAAATTG 59.137 34.615 0.00 0.00 0.00 2.32
6175 7657 6.980593 TCGATCTCAAAATTCCACACAAATT 58.019 32.000 0.00 0.00 0.00 1.82
6176 7658 6.573664 TCGATCTCAAAATTCCACACAAAT 57.426 33.333 0.00 0.00 0.00 2.32
6177 7659 6.573664 ATCGATCTCAAAATTCCACACAAA 57.426 33.333 0.00 0.00 0.00 2.83
6178 7660 6.573664 AATCGATCTCAAAATTCCACACAA 57.426 33.333 0.00 0.00 0.00 3.33
6179 7661 5.163864 CGAATCGATCTCAAAATTCCACACA 60.164 40.000 0.00 0.00 0.00 3.72
6180 7662 5.163854 ACGAATCGATCTCAAAATTCCACAC 60.164 40.000 10.55 0.00 0.00 3.82
6181 7663 4.935205 ACGAATCGATCTCAAAATTCCACA 59.065 37.500 10.55 0.00 0.00 4.17
6182 7664 5.470845 ACGAATCGATCTCAAAATTCCAC 57.529 39.130 10.55 0.00 0.00 4.02
6183 7665 5.641636 TGAACGAATCGATCTCAAAATTCCA 59.358 36.000 10.55 0.00 30.24 3.53
6184 7666 6.036083 TCTGAACGAATCGATCTCAAAATTCC 59.964 38.462 10.55 0.00 30.24 3.01
6185 7667 6.993878 TCTGAACGAATCGATCTCAAAATTC 58.006 36.000 10.55 0.00 30.24 2.17
6186 7668 6.968131 TCTGAACGAATCGATCTCAAAATT 57.032 33.333 10.55 0.00 30.24 1.82
6187 7669 6.983307 AGATCTGAACGAATCGATCTCAAAAT 59.017 34.615 10.55 5.72 40.85 1.82
6188 7670 6.254373 CAGATCTGAACGAATCGATCTCAAAA 59.746 38.462 18.34 1.32 41.84 2.44
6189 7671 5.745769 CAGATCTGAACGAATCGATCTCAAA 59.254 40.000 18.34 0.00 41.84 2.69
6190 7672 5.066505 TCAGATCTGAACGAATCGATCTCAA 59.933 40.000 23.17 0.00 41.84 3.02
6191 7673 4.576463 TCAGATCTGAACGAATCGATCTCA 59.424 41.667 23.17 8.05 41.84 3.27
6192 7674 5.102020 TCAGATCTGAACGAATCGATCTC 57.898 43.478 23.17 0.95 41.84 2.75
6193 7675 5.506686 TTCAGATCTGAACGAATCGATCT 57.493 39.130 30.05 3.67 43.90 2.75
6194 7676 4.148000 GCTTCAGATCTGAACGAATCGATC 59.852 45.833 30.05 7.98 43.90 3.69
6195 7677 4.047822 GCTTCAGATCTGAACGAATCGAT 58.952 43.478 30.05 0.00 43.90 3.59
6196 7678 3.119495 TGCTTCAGATCTGAACGAATCGA 60.119 43.478 30.05 11.11 43.90 3.59
6197 7679 3.182182 TGCTTCAGATCTGAACGAATCG 58.818 45.455 30.05 20.90 43.90 3.34
6198 7680 4.033817 CCTTGCTTCAGATCTGAACGAATC 59.966 45.833 30.05 17.63 43.90 2.52
6199 7681 3.937706 CCTTGCTTCAGATCTGAACGAAT 59.062 43.478 30.05 0.00 43.90 3.34
6200 7682 3.244215 ACCTTGCTTCAGATCTGAACGAA 60.244 43.478 30.05 22.84 43.90 3.85
6201 7683 2.300152 ACCTTGCTTCAGATCTGAACGA 59.700 45.455 30.05 23.35 43.90 3.85
6202 7684 2.693069 ACCTTGCTTCAGATCTGAACG 58.307 47.619 30.05 24.89 43.90 3.95
6203 7685 3.620821 GCTACCTTGCTTCAGATCTGAAC 59.379 47.826 30.05 25.01 43.90 3.18
6204 7686 3.517100 AGCTACCTTGCTTCAGATCTGAA 59.483 43.478 31.10 31.10 46.27 3.02
6205 7687 3.102972 AGCTACCTTGCTTCAGATCTGA 58.897 45.455 21.67 21.67 40.93 3.27
6206 7688 3.540314 AGCTACCTTGCTTCAGATCTG 57.460 47.619 17.07 17.07 40.93 2.90
6207 7689 3.640967 CCTAGCTACCTTGCTTCAGATCT 59.359 47.826 0.00 0.00 43.74 2.75
6208 7690 3.639094 TCCTAGCTACCTTGCTTCAGATC 59.361 47.826 0.00 0.00 43.74 2.75
6209 7691 3.647636 TCCTAGCTACCTTGCTTCAGAT 58.352 45.455 0.00 0.00 43.74 2.90
6210 7692 3.101643 TCCTAGCTACCTTGCTTCAGA 57.898 47.619 0.00 0.00 43.74 3.27
6211 7693 4.414337 AATCCTAGCTACCTTGCTTCAG 57.586 45.455 0.00 0.00 43.74 3.02
6212 7694 4.844349 AAATCCTAGCTACCTTGCTTCA 57.156 40.909 0.00 0.00 43.74 3.02
6213 7695 4.336713 CCAAAATCCTAGCTACCTTGCTTC 59.663 45.833 0.00 0.00 43.74 3.86
6214 7696 4.273318 CCAAAATCCTAGCTACCTTGCTT 58.727 43.478 0.00 0.00 43.74 3.91
6215 7697 3.891049 CCAAAATCCTAGCTACCTTGCT 58.109 45.455 0.00 0.00 46.11 3.91
6216 7698 2.359214 GCCAAAATCCTAGCTACCTTGC 59.641 50.000 0.00 0.00 0.00 4.01
6217 7699 2.952310 GGCCAAAATCCTAGCTACCTTG 59.048 50.000 0.00 0.00 0.00 3.61
6218 7700 2.580783 TGGCCAAAATCCTAGCTACCTT 59.419 45.455 0.61 0.00 0.00 3.50
6219 7701 2.173569 CTGGCCAAAATCCTAGCTACCT 59.826 50.000 7.01 0.00 0.00 3.08
6220 7702 2.576615 CTGGCCAAAATCCTAGCTACC 58.423 52.381 7.01 0.00 0.00 3.18
6221 7703 1.950216 GCTGGCCAAAATCCTAGCTAC 59.050 52.381 7.01 0.00 0.00 3.58
6222 7704 1.133792 GGCTGGCCAAAATCCTAGCTA 60.134 52.381 7.01 0.00 35.81 3.32
6223 7705 0.396278 GGCTGGCCAAAATCCTAGCT 60.396 55.000 7.01 0.00 35.81 3.32
6224 7706 1.728490 CGGCTGGCCAAAATCCTAGC 61.728 60.000 7.01 3.42 35.37 3.42
6225 7707 1.103398 CCGGCTGGCCAAAATCCTAG 61.103 60.000 7.01 0.00 35.37 3.02
6226 7708 1.077068 CCGGCTGGCCAAAATCCTA 60.077 57.895 7.01 0.00 35.37 2.94
6227 7709 2.362889 CCGGCTGGCCAAAATCCT 60.363 61.111 7.01 0.00 35.37 3.24
6228 7710 1.981853 TTCCGGCTGGCCAAAATCC 60.982 57.895 7.01 4.85 35.37 3.01
6229 7711 1.215382 GTTCCGGCTGGCCAAAATC 59.785 57.895 7.01 0.00 35.37 2.17
6230 7712 1.532794 TGTTCCGGCTGGCCAAAAT 60.533 52.632 7.01 0.00 35.37 1.82
6231 7713 2.123683 TGTTCCGGCTGGCCAAAA 60.124 55.556 7.01 0.00 35.37 2.44
6232 7714 2.909965 GTGTTCCGGCTGGCCAAA 60.910 61.111 7.01 0.00 35.37 3.28
6242 7724 4.728102 TGTAGCCGCCGTGTTCCG 62.728 66.667 0.00 0.00 0.00 4.30
6243 7725 2.357760 TTGTAGCCGCCGTGTTCC 60.358 61.111 0.00 0.00 0.00 3.62
6244 7726 2.388232 CCTTGTAGCCGCCGTGTTC 61.388 63.158 0.00 0.00 0.00 3.18
6245 7727 2.358247 CCTTGTAGCCGCCGTGTT 60.358 61.111 0.00 0.00 0.00 3.32
6246 7728 4.388499 CCCTTGTAGCCGCCGTGT 62.388 66.667 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.