Multiple sequence alignment - TraesCS5A01G421800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G421800 chr5A 100.000 2022 0 0 2163 4184 608032984 608035005 0.000000e+00 3735.0
1 TraesCS5A01G421800 chr5A 100.000 1872 0 0 1 1872 608030822 608032693 0.000000e+00 3458.0
2 TraesCS5A01G421800 chr5A 87.879 231 18 7 110 340 1705088 1704868 3.210000e-66 263.0
3 TraesCS5A01G421800 chr5A 84.475 219 22 10 605 816 608082182 608082395 5.480000e-49 206.0
4 TraesCS5A01G421800 chr5A 84.163 221 22 11 605 816 608059710 608059926 7.090000e-48 202.0
5 TraesCS5A01G421800 chr5D 92.565 1466 59 26 2163 3583 487468581 487470041 0.000000e+00 2058.0
6 TraesCS5A01G421800 chr5D 89.608 1530 62 39 337 1839 487467020 487468479 0.000000e+00 1855.0
7 TraesCS5A01G421800 chr5D 84.305 223 22 11 601 816 487485344 487485560 5.480000e-49 206.0
8 TraesCS5A01G421800 chr5D 91.034 145 9 3 337 478 487484782 487484925 4.270000e-45 193.0
9 TraesCS5A01G421800 chr5D 88.000 150 10 6 337 485 487449560 487449702 2.000000e-38 171.0
10 TraesCS5A01G421800 chr5D 80.519 231 17 13 610 817 487449938 487450163 7.240000e-33 152.0
11 TraesCS5A01G421800 chr5B 93.312 1271 52 17 589 1847 600054087 600055336 0.000000e+00 1845.0
12 TraesCS5A01G421800 chr5B 91.556 604 27 7 2711 3294 600055935 600056534 0.000000e+00 811.0
13 TraesCS5A01G421800 chr5B 94.605 519 15 4 2163 2668 600055416 600055934 0.000000e+00 791.0
14 TraesCS5A01G421800 chr5B 87.975 158 9 3 337 494 600053885 600054032 1.200000e-40 178.0
15 TraesCS5A01G421800 chr7A 97.837 601 6 1 3584 4184 30221641 30222234 0.000000e+00 1031.0
16 TraesCS5A01G421800 chr7A 83.226 620 52 24 3599 4184 707992429 707991828 4.790000e-144 521.0
17 TraesCS5A01G421800 chr7A 96.825 126 3 1 4059 4184 734626136 734626012 4.240000e-50 209.0
18 TraesCS5A01G421800 chr3D 92.971 626 16 7 3579 4184 35699987 35700604 0.000000e+00 887.0
19 TraesCS5A01G421800 chr3D 91.837 637 17 13 3577 4184 35689068 35688438 0.000000e+00 856.0
20 TraesCS5A01G421800 chr1B 83.254 633 57 23 3585 4184 567187335 567187951 1.710000e-148 536.0
21 TraesCS5A01G421800 chr6B 82.271 643 65 22 3579 4184 30413444 30414074 1.040000e-140 510.0
22 TraesCS5A01G421800 chr6B 81.672 622 61 29 3599 4184 46396307 46396911 6.330000e-128 468.0
23 TraesCS5A01G421800 chr7D 90.000 340 26 5 1 340 327490234 327489903 2.310000e-117 433.0
24 TraesCS5A01G421800 chr6D 87.536 345 29 5 1 340 405486577 405486912 1.820000e-103 387.0
25 TraesCS5A01G421800 chr6D 84.831 356 31 7 1 341 467109049 467109396 1.860000e-88 337.0
26 TraesCS5A01G421800 chr2D 85.955 356 28 5 1 342 110048209 110048556 1.110000e-95 361.0
27 TraesCS5A01G421800 chr3A 88.704 301 20 3 1 287 574862883 574863183 5.140000e-94 355.0
28 TraesCS5A01G421800 chr3A 85.227 352 30 7 1 338 478659895 478660238 4.010000e-90 342.0
29 TraesCS5A01G421800 chr3A 79.775 356 45 18 1 340 679658088 679658432 2.520000e-57 233.0
30 TraesCS5A01G421800 chr3A 79.752 242 24 13 3958 4174 44766525 44766284 7.240000e-33 152.0
31 TraesCS5A01G421800 chr3A 78.539 219 37 5 3958 4167 660433930 660434147 7.300000e-28 135.0
32 TraesCS5A01G421800 chr3A 89.000 100 11 0 3958 4057 44727725 44727824 1.580000e-24 124.0
33 TraesCS5A01G421800 chr4B 78.519 135 19 9 155 285 527289714 527289842 3.470000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G421800 chr5A 608030822 608035005 4183 False 3596.50 3735 100.0000 1 4184 2 chr5A.!!$F3 4183
1 TraesCS5A01G421800 chr5D 487467020 487470041 3021 False 1956.50 2058 91.0865 337 3583 2 chr5D.!!$F2 3246
2 TraesCS5A01G421800 chr5B 600053885 600056534 2649 False 906.25 1845 91.8620 337 3294 4 chr5B.!!$F1 2957
3 TraesCS5A01G421800 chr7A 30221641 30222234 593 False 1031.00 1031 97.8370 3584 4184 1 chr7A.!!$F1 600
4 TraesCS5A01G421800 chr7A 707991828 707992429 601 True 521.00 521 83.2260 3599 4184 1 chr7A.!!$R1 585
5 TraesCS5A01G421800 chr3D 35699987 35700604 617 False 887.00 887 92.9710 3579 4184 1 chr3D.!!$F1 605
6 TraesCS5A01G421800 chr3D 35688438 35689068 630 True 856.00 856 91.8370 3577 4184 1 chr3D.!!$R1 607
7 TraesCS5A01G421800 chr1B 567187335 567187951 616 False 536.00 536 83.2540 3585 4184 1 chr1B.!!$F1 599
8 TraesCS5A01G421800 chr6B 30413444 30414074 630 False 510.00 510 82.2710 3579 4184 1 chr6B.!!$F1 605
9 TraesCS5A01G421800 chr6B 46396307 46396911 604 False 468.00 468 81.6720 3599 4184 1 chr6B.!!$F2 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.036732 AATCTCGCTGCAGTTCCCAA 59.963 50.000 16.64 0.0 0.00 4.12 F
79 80 0.036732 ATCTCGCTGCAGTTCCCAAA 59.963 50.000 16.64 0.0 0.00 3.28 F
80 81 0.036732 TCTCGCTGCAGTTCCCAAAT 59.963 50.000 16.64 0.0 0.00 2.32 F
286 287 0.037975 GGCTACGTTTTCTGTCCGGA 60.038 55.000 0.00 0.0 0.00 5.14 F
495 499 0.179073 ATCAGATGCGTGTGGTAGGC 60.179 55.000 2.85 0.0 40.51 3.93 F
705 710 0.249868 CCCGTGCTCTTCACTTCACA 60.250 55.000 0.00 0.0 43.46 3.58 F
1049 1081 1.795525 CGTCACACTAGTCGCATCAGG 60.796 57.143 0.00 0.0 0.00 3.86 F
2573 2624 0.891904 TCAAAACGCCCTAAGCCACC 60.892 55.000 0.00 0.0 38.78 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1203 1235 0.095935 CGCCGTTGAAGCTCTTGATG 59.904 55.000 0.00 0.00 0.00 3.07 R
1311 1346 0.530650 CGGAGTTGGTGATCGGGATG 60.531 60.000 0.00 0.00 0.00 3.51 R
1829 1864 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10 R
1839 1874 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10 R
1843 1878 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10 R
2508 2557 0.320683 TGAACAGGATGACGTGGCAG 60.321 55.000 0.00 0.00 39.69 4.85 R
2830 2885 0.660595 CCGGATAGCACGTCGACATC 60.661 60.000 17.16 10.13 0.00 3.06 R
3477 3582 3.436700 ACAAGGCCACGAAAAGAAAAG 57.563 42.857 5.01 0.00 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.579201 CCGTCGAGGATGGCAACT 59.421 61.111 6.70 0.00 45.00 3.16
35 36 1.519455 CCGTCGAGGATGGCAACTC 60.519 63.158 6.70 11.30 45.00 3.01
39 40 4.208632 GAGGATGGCAACTCGTGG 57.791 61.111 6.78 0.00 37.61 4.94
61 62 4.115199 GCTCGGCTGGGTGGGAAT 62.115 66.667 0.00 0.00 0.00 3.01
62 63 2.190578 CTCGGCTGGGTGGGAATC 59.809 66.667 0.00 0.00 0.00 2.52
63 64 2.285368 TCGGCTGGGTGGGAATCT 60.285 61.111 0.00 0.00 0.00 2.40
64 65 2.190578 CGGCTGGGTGGGAATCTC 59.809 66.667 0.00 0.00 0.00 2.75
65 66 2.190578 GGCTGGGTGGGAATCTCG 59.809 66.667 0.00 0.00 0.00 4.04
66 67 2.514824 GCTGGGTGGGAATCTCGC 60.515 66.667 0.00 0.00 0.00 5.03
67 68 3.036429 GCTGGGTGGGAATCTCGCT 62.036 63.158 0.00 0.00 0.00 4.93
68 69 1.153289 CTGGGTGGGAATCTCGCTG 60.153 63.158 0.00 0.00 0.00 5.18
69 70 2.514824 GGGTGGGAATCTCGCTGC 60.515 66.667 0.00 0.00 0.00 5.25
70 71 2.268920 GGTGGGAATCTCGCTGCA 59.731 61.111 0.00 0.00 0.00 4.41
71 72 1.817099 GGTGGGAATCTCGCTGCAG 60.817 63.158 10.11 10.11 0.00 4.41
72 73 1.078848 GTGGGAATCTCGCTGCAGT 60.079 57.895 16.64 0.00 0.00 4.40
73 74 0.674895 GTGGGAATCTCGCTGCAGTT 60.675 55.000 16.64 0.07 0.00 3.16
74 75 0.391661 TGGGAATCTCGCTGCAGTTC 60.392 55.000 16.64 10.38 0.00 3.01
75 76 1.092345 GGGAATCTCGCTGCAGTTCC 61.092 60.000 19.80 19.80 38.05 3.62
76 77 1.092345 GGAATCTCGCTGCAGTTCCC 61.092 60.000 18.04 6.70 33.80 3.97
77 78 0.391661 GAATCTCGCTGCAGTTCCCA 60.392 55.000 16.64 0.00 0.00 4.37
78 79 0.036732 AATCTCGCTGCAGTTCCCAA 59.963 50.000 16.64 0.00 0.00 4.12
79 80 0.036732 ATCTCGCTGCAGTTCCCAAA 59.963 50.000 16.64 0.00 0.00 3.28
80 81 0.036732 TCTCGCTGCAGTTCCCAAAT 59.963 50.000 16.64 0.00 0.00 2.32
81 82 0.169672 CTCGCTGCAGTTCCCAAATG 59.830 55.000 16.64 0.00 0.00 2.32
82 83 1.213537 CGCTGCAGTTCCCAAATGG 59.786 57.895 16.64 0.00 0.00 3.16
83 84 1.079612 GCTGCAGTTCCCAAATGGC 60.080 57.895 16.64 0.00 0.00 4.40
84 85 1.538687 GCTGCAGTTCCCAAATGGCT 61.539 55.000 16.64 0.00 0.00 4.75
85 86 0.529378 CTGCAGTTCCCAAATGGCTC 59.471 55.000 5.25 0.00 0.00 4.70
86 87 1.243342 TGCAGTTCCCAAATGGCTCG 61.243 55.000 0.00 0.00 0.00 5.03
87 88 1.244019 GCAGTTCCCAAATGGCTCGT 61.244 55.000 0.00 0.00 0.00 4.18
88 89 0.523072 CAGTTCCCAAATGGCTCGTG 59.477 55.000 0.00 0.00 0.00 4.35
89 90 1.212751 GTTCCCAAATGGCTCGTGC 59.787 57.895 0.00 0.00 38.76 5.34
90 91 1.074775 TTCCCAAATGGCTCGTGCT 59.925 52.632 9.61 0.00 39.59 4.40
91 92 1.243342 TTCCCAAATGGCTCGTGCTG 61.243 55.000 9.61 0.00 39.59 4.41
92 93 1.973281 CCCAAATGGCTCGTGCTGT 60.973 57.895 9.61 0.00 39.59 4.40
93 94 1.210931 CCAAATGGCTCGTGCTGTG 59.789 57.895 9.61 2.89 39.59 3.66
94 95 1.518056 CCAAATGGCTCGTGCTGTGT 61.518 55.000 9.61 0.00 39.59 3.72
95 96 0.110056 CAAATGGCTCGTGCTGTGTC 60.110 55.000 9.61 0.00 39.59 3.67
96 97 1.568612 AAATGGCTCGTGCTGTGTCG 61.569 55.000 9.61 0.00 39.59 4.35
113 114 2.502142 TCGCAGACTAGTAGGACCAA 57.498 50.000 0.00 0.00 0.00 3.67
114 115 2.366533 TCGCAGACTAGTAGGACCAAG 58.633 52.381 0.00 0.00 0.00 3.61
115 116 1.405821 CGCAGACTAGTAGGACCAAGG 59.594 57.143 0.00 0.00 0.00 3.61
116 117 1.137282 GCAGACTAGTAGGACCAAGGC 59.863 57.143 0.00 0.00 0.00 4.35
117 118 1.405821 CAGACTAGTAGGACCAAGGCG 59.594 57.143 0.00 0.00 0.00 5.52
118 119 0.745468 GACTAGTAGGACCAAGGCGG 59.255 60.000 0.00 0.00 42.50 6.13
119 120 0.333993 ACTAGTAGGACCAAGGCGGA 59.666 55.000 1.45 0.00 38.63 5.54
120 121 0.745468 CTAGTAGGACCAAGGCGGAC 59.255 60.000 0.00 0.00 38.63 4.79
121 122 0.040058 TAGTAGGACCAAGGCGGACA 59.960 55.000 0.00 0.00 38.63 4.02
122 123 1.079336 GTAGGACCAAGGCGGACAC 60.079 63.158 0.00 0.00 38.63 3.67
123 124 2.642254 TAGGACCAAGGCGGACACG 61.642 63.158 0.00 0.00 44.63 4.49
127 128 4.760047 CCAAGGCGGACACGGGAG 62.760 72.222 0.00 0.00 41.36 4.30
128 129 4.760047 CAAGGCGGACACGGGAGG 62.760 72.222 0.00 0.00 41.36 4.30
137 138 4.514577 CACGGGAGGGTAGCAGCG 62.515 72.222 0.00 0.00 0.00 5.18
140 141 3.851128 GGGAGGGTAGCAGCGGAC 61.851 72.222 0.00 0.00 0.00 4.79
141 142 4.208686 GGAGGGTAGCAGCGGACG 62.209 72.222 0.00 0.00 0.00 4.79
142 143 3.138798 GAGGGTAGCAGCGGACGA 61.139 66.667 0.00 0.00 0.00 4.20
143 144 3.127352 GAGGGTAGCAGCGGACGAG 62.127 68.421 0.00 0.00 0.00 4.18
144 145 3.138798 GGGTAGCAGCGGACGAGA 61.139 66.667 0.00 0.00 0.00 4.04
145 146 2.409651 GGTAGCAGCGGACGAGAG 59.590 66.667 0.00 0.00 0.00 3.20
146 147 2.409651 GTAGCAGCGGACGAGAGG 59.590 66.667 0.00 0.00 0.00 3.69
147 148 2.113433 GTAGCAGCGGACGAGAGGA 61.113 63.158 0.00 0.00 0.00 3.71
148 149 1.820056 TAGCAGCGGACGAGAGGAG 60.820 63.158 0.00 0.00 0.00 3.69
149 150 4.863925 GCAGCGGACGAGAGGAGC 62.864 72.222 0.00 0.00 0.00 4.70
150 151 4.544689 CAGCGGACGAGAGGAGCG 62.545 72.222 0.00 0.00 34.84 5.03
165 166 3.660111 GCGCCTGCTTTTGTCCGT 61.660 61.111 0.00 0.00 38.39 4.69
166 167 2.556287 CGCCTGCTTTTGTCCGTC 59.444 61.111 0.00 0.00 0.00 4.79
167 168 2.556287 GCCTGCTTTTGTCCGTCG 59.444 61.111 0.00 0.00 0.00 5.12
168 169 2.251642 GCCTGCTTTTGTCCGTCGT 61.252 57.895 0.00 0.00 0.00 4.34
169 170 1.569493 CCTGCTTTTGTCCGTCGTG 59.431 57.895 0.00 0.00 0.00 4.35
170 171 1.569493 CTGCTTTTGTCCGTCGTGG 59.431 57.895 0.00 0.00 40.09 4.94
178 179 3.474000 TCCGTCGTGGACCCATTT 58.526 55.556 0.00 0.00 43.74 2.32
179 180 1.004320 TCCGTCGTGGACCCATTTG 60.004 57.895 0.00 0.00 43.74 2.32
180 181 1.302192 CCGTCGTGGACCCATTTGT 60.302 57.895 0.00 0.00 42.00 2.83
181 182 1.573829 CCGTCGTGGACCCATTTGTG 61.574 60.000 0.00 0.00 42.00 3.33
182 183 1.573829 CGTCGTGGACCCATTTGTGG 61.574 60.000 0.00 0.00 0.00 4.17
183 184 1.602323 TCGTGGACCCATTTGTGGC 60.602 57.895 0.00 0.00 0.00 5.01
184 185 2.635443 CGTGGACCCATTTGTGGCC 61.635 63.158 0.00 0.00 0.00 5.36
185 186 1.228862 GTGGACCCATTTGTGGCCT 60.229 57.895 3.32 0.00 0.00 5.19
186 187 0.039035 GTGGACCCATTTGTGGCCTA 59.961 55.000 3.32 0.00 0.00 3.93
187 188 0.780637 TGGACCCATTTGTGGCCTAA 59.219 50.000 3.32 0.00 0.00 2.69
188 189 1.148027 TGGACCCATTTGTGGCCTAAA 59.852 47.619 3.32 6.23 0.00 1.85
189 190 2.225496 TGGACCCATTTGTGGCCTAAAT 60.225 45.455 3.32 8.51 0.00 1.40
190 191 2.837591 GGACCCATTTGTGGCCTAAATT 59.162 45.455 13.64 3.14 0.00 1.82
191 192 3.263170 GGACCCATTTGTGGCCTAAATTT 59.737 43.478 13.64 0.00 0.00 1.82
192 193 4.252878 GACCCATTTGTGGCCTAAATTTG 58.747 43.478 13.64 10.82 0.00 2.32
193 194 3.008923 ACCCATTTGTGGCCTAAATTTGG 59.991 43.478 19.12 19.12 0.00 3.28
194 195 3.608796 CCATTTGTGGCCTAAATTTGGG 58.391 45.455 15.89 15.89 0.00 4.12
204 205 4.192429 CCTAAATTTGGGCTCAGTTTGG 57.808 45.455 7.74 6.21 0.00 3.28
205 206 3.055891 CCTAAATTTGGGCTCAGTTTGGG 60.056 47.826 7.74 12.39 30.84 4.12
206 207 2.101640 AATTTGGGCTCAGTTTGGGT 57.898 45.000 0.00 0.00 0.00 4.51
207 208 1.632589 ATTTGGGCTCAGTTTGGGTC 58.367 50.000 0.00 0.00 0.00 4.46
208 209 0.821711 TTTGGGCTCAGTTTGGGTCG 60.822 55.000 0.00 0.00 0.00 4.79
209 210 2.359975 GGGCTCAGTTTGGGTCGG 60.360 66.667 0.00 0.00 0.00 4.79
210 211 2.359975 GGCTCAGTTTGGGTCGGG 60.360 66.667 0.00 0.00 0.00 5.14
211 212 2.359975 GCTCAGTTTGGGTCGGGG 60.360 66.667 0.00 0.00 0.00 5.73
212 213 3.157680 CTCAGTTTGGGTCGGGGT 58.842 61.111 0.00 0.00 0.00 4.95
213 214 1.302511 CTCAGTTTGGGTCGGGGTG 60.303 63.158 0.00 0.00 0.00 4.61
214 215 2.282180 CAGTTTGGGTCGGGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
215 216 2.448931 AGTTTGGGTCGGGGTGGA 60.449 61.111 0.00 0.00 0.00 4.02
216 217 1.850755 AGTTTGGGTCGGGGTGGAT 60.851 57.895 0.00 0.00 0.00 3.41
217 218 1.677633 GTTTGGGTCGGGGTGGATG 60.678 63.158 0.00 0.00 0.00 3.51
218 219 1.848431 TTTGGGTCGGGGTGGATGA 60.848 57.895 0.00 0.00 0.00 2.92
219 220 1.211567 TTTGGGTCGGGGTGGATGAT 61.212 55.000 0.00 0.00 0.00 2.45
220 221 0.326713 TTGGGTCGGGGTGGATGATA 60.327 55.000 0.00 0.00 0.00 2.15
221 222 0.326713 TGGGTCGGGGTGGATGATAA 60.327 55.000 0.00 0.00 0.00 1.75
222 223 0.841289 GGGTCGGGGTGGATGATAAA 59.159 55.000 0.00 0.00 0.00 1.40
223 224 1.476291 GGGTCGGGGTGGATGATAAAC 60.476 57.143 0.00 0.00 0.00 2.01
224 225 1.578583 GTCGGGGTGGATGATAAACG 58.421 55.000 0.00 0.00 0.00 3.60
225 226 0.466543 TCGGGGTGGATGATAAACGG 59.533 55.000 0.00 0.00 0.00 4.44
226 227 0.466543 CGGGGTGGATGATAAACGGA 59.533 55.000 0.00 0.00 0.00 4.69
227 228 1.808891 CGGGGTGGATGATAAACGGAC 60.809 57.143 0.00 0.00 0.00 4.79
228 229 1.210967 GGGGTGGATGATAAACGGACA 59.789 52.381 0.00 0.00 0.00 4.02
229 230 2.561569 GGGTGGATGATAAACGGACAG 58.438 52.381 0.00 0.00 0.00 3.51
230 231 1.940613 GGTGGATGATAAACGGACAGC 59.059 52.381 0.00 0.00 0.00 4.40
231 232 2.627945 GTGGATGATAAACGGACAGCA 58.372 47.619 0.00 0.00 0.00 4.41
232 233 2.609459 GTGGATGATAAACGGACAGCAG 59.391 50.000 0.00 0.00 0.00 4.24
233 234 2.499693 TGGATGATAAACGGACAGCAGA 59.500 45.455 0.00 0.00 0.00 4.26
234 235 2.866762 GGATGATAAACGGACAGCAGAC 59.133 50.000 0.00 0.00 0.00 3.51
235 236 1.990799 TGATAAACGGACAGCAGACG 58.009 50.000 0.00 0.00 0.00 4.18
236 237 1.278238 GATAAACGGACAGCAGACGG 58.722 55.000 0.00 0.00 0.00 4.79
237 238 0.892755 ATAAACGGACAGCAGACGGA 59.107 50.000 0.00 0.00 0.00 4.69
238 239 0.038892 TAAACGGACAGCAGACGGAC 60.039 55.000 0.00 0.00 0.00 4.79
239 240 2.710724 AAACGGACAGCAGACGGACC 62.711 60.000 0.00 0.00 0.00 4.46
240 241 3.374402 CGGACAGCAGACGGACCT 61.374 66.667 0.00 0.00 0.00 3.85
241 242 2.262915 GGACAGCAGACGGACCTG 59.737 66.667 0.00 0.00 37.23 4.00
252 253 2.665185 GGACCTGCGCGTCTGTTT 60.665 61.111 8.43 0.00 33.07 2.83
253 254 2.551270 GACCTGCGCGTCTGTTTG 59.449 61.111 8.43 0.00 0.00 2.93
254 255 2.954753 GACCTGCGCGTCTGTTTGG 61.955 63.158 8.43 2.38 0.00 3.28
255 256 3.726517 CCTGCGCGTCTGTTTGGG 61.727 66.667 8.43 0.00 0.00 4.12
256 257 2.972505 CTGCGCGTCTGTTTGGGT 60.973 61.111 8.43 0.00 0.00 4.51
257 258 2.954753 CTGCGCGTCTGTTTGGGTC 61.955 63.158 8.43 0.00 0.00 4.46
258 259 4.072088 GCGCGTCTGTTTGGGTCG 62.072 66.667 8.43 0.00 0.00 4.79
259 260 4.072088 CGCGTCTGTTTGGGTCGC 62.072 66.667 0.00 0.00 42.78 5.19
260 261 3.723348 GCGTCTGTTTGGGTCGCC 61.723 66.667 0.00 0.00 40.83 5.54
261 262 3.047877 CGTCTGTTTGGGTCGCCC 61.048 66.667 7.87 7.87 45.71 6.13
277 278 4.068280 CCCGTTGGGCTACGTTTT 57.932 55.556 0.00 0.00 39.81 2.43
278 279 1.871077 CCCGTTGGGCTACGTTTTC 59.129 57.895 0.00 0.00 39.81 2.29
279 280 0.604511 CCCGTTGGGCTACGTTTTCT 60.605 55.000 0.00 0.00 39.81 2.52
280 281 0.515564 CCGTTGGGCTACGTTTTCTG 59.484 55.000 0.00 0.00 39.81 3.02
281 282 1.223187 CGTTGGGCTACGTTTTCTGT 58.777 50.000 0.00 0.00 36.80 3.41
282 283 1.193874 CGTTGGGCTACGTTTTCTGTC 59.806 52.381 0.00 0.00 36.80 3.51
283 284 1.534163 GTTGGGCTACGTTTTCTGTCC 59.466 52.381 0.00 0.00 0.00 4.02
284 285 0.320073 TGGGCTACGTTTTCTGTCCG 60.320 55.000 0.00 0.00 0.00 4.79
285 286 1.017701 GGGCTACGTTTTCTGTCCGG 61.018 60.000 0.00 0.00 0.00 5.14
286 287 0.037975 GGCTACGTTTTCTGTCCGGA 60.038 55.000 0.00 0.00 0.00 5.14
287 288 1.606224 GGCTACGTTTTCTGTCCGGAA 60.606 52.381 5.23 0.00 0.00 4.30
288 289 1.458445 GCTACGTTTTCTGTCCGGAAC 59.542 52.381 5.23 0.00 0.00 3.62
289 290 2.865276 GCTACGTTTTCTGTCCGGAACT 60.865 50.000 5.23 0.00 0.00 3.01
290 291 1.861971 ACGTTTTCTGTCCGGAACTC 58.138 50.000 5.23 0.00 0.00 3.01
291 292 1.145803 CGTTTTCTGTCCGGAACTCC 58.854 55.000 5.23 0.00 0.00 3.85
303 304 2.762535 GGAACTCCGGATGACTCAAA 57.237 50.000 3.57 0.00 0.00 2.69
304 305 2.347731 GGAACTCCGGATGACTCAAAC 58.652 52.381 3.57 0.00 0.00 2.93
305 306 1.993370 GAACTCCGGATGACTCAAACG 59.007 52.381 3.57 0.00 0.00 3.60
306 307 0.246635 ACTCCGGATGACTCAAACGG 59.753 55.000 3.57 15.19 45.52 4.44
309 310 3.507597 CGGATGACTCAAACGGACA 57.492 52.632 0.00 0.00 0.00 4.02
310 311 1.790755 CGGATGACTCAAACGGACAA 58.209 50.000 0.00 0.00 0.00 3.18
311 312 2.139917 CGGATGACTCAAACGGACAAA 58.860 47.619 0.00 0.00 0.00 2.83
312 313 2.546368 CGGATGACTCAAACGGACAAAA 59.454 45.455 0.00 0.00 0.00 2.44
313 314 3.188460 CGGATGACTCAAACGGACAAAAT 59.812 43.478 0.00 0.00 0.00 1.82
314 315 4.475944 GGATGACTCAAACGGACAAAATG 58.524 43.478 0.00 0.00 0.00 2.32
315 316 4.215399 GGATGACTCAAACGGACAAAATGA 59.785 41.667 0.00 0.00 0.00 2.57
316 317 5.278266 GGATGACTCAAACGGACAAAATGAA 60.278 40.000 0.00 0.00 0.00 2.57
317 318 5.766150 TGACTCAAACGGACAAAATGAAT 57.234 34.783 0.00 0.00 0.00 2.57
318 319 5.757886 TGACTCAAACGGACAAAATGAATC 58.242 37.500 0.00 0.00 0.00 2.52
319 320 4.783242 ACTCAAACGGACAAAATGAATCG 58.217 39.130 0.00 0.00 0.00 3.34
320 321 3.560503 TCAAACGGACAAAATGAATCGC 58.439 40.909 0.00 0.00 0.00 4.58
321 322 3.003793 TCAAACGGACAAAATGAATCGCA 59.996 39.130 0.00 0.00 0.00 5.10
322 323 2.611974 ACGGACAAAATGAATCGCAC 57.388 45.000 0.00 0.00 0.00 5.34
323 324 1.199097 ACGGACAAAATGAATCGCACC 59.801 47.619 0.00 0.00 0.00 5.01
324 325 1.198867 CGGACAAAATGAATCGCACCA 59.801 47.619 0.00 0.00 0.00 4.17
325 326 2.159393 CGGACAAAATGAATCGCACCAT 60.159 45.455 0.00 0.00 0.00 3.55
326 327 3.673052 CGGACAAAATGAATCGCACCATT 60.673 43.478 0.00 0.00 34.75 3.16
327 328 4.438065 CGGACAAAATGAATCGCACCATTA 60.438 41.667 0.00 0.00 33.13 1.90
328 329 5.406649 GGACAAAATGAATCGCACCATTAA 58.593 37.500 0.00 0.00 33.13 1.40
329 330 5.866633 GGACAAAATGAATCGCACCATTAAA 59.133 36.000 0.00 0.00 33.13 1.52
330 331 6.034898 GGACAAAATGAATCGCACCATTAAAG 59.965 38.462 0.00 0.00 33.13 1.85
331 332 6.454795 ACAAAATGAATCGCACCATTAAAGT 58.545 32.000 0.00 0.00 33.13 2.66
332 333 6.928492 ACAAAATGAATCGCACCATTAAAGTT 59.072 30.769 0.00 0.00 33.13 2.66
333 334 6.949578 AAATGAATCGCACCATTAAAGTTG 57.050 33.333 0.00 0.00 33.13 3.16
334 335 3.832276 TGAATCGCACCATTAAAGTTGC 58.168 40.909 0.00 0.00 0.00 4.17
335 336 3.505680 TGAATCGCACCATTAAAGTTGCT 59.494 39.130 0.00 0.00 0.00 3.91
443 444 0.318360 TCTGCAAGGTCACACGTACG 60.318 55.000 15.01 15.01 0.00 3.67
457 461 2.818350 GTACGTCACGAGGTTTGGG 58.182 57.895 2.91 0.00 0.00 4.12
460 464 0.531311 ACGTCACGAGGTTTGGGTTC 60.531 55.000 2.91 0.00 0.00 3.62
494 498 1.410517 AGATCAGATGCGTGTGGTAGG 59.589 52.381 2.85 0.00 0.00 3.18
495 499 0.179073 ATCAGATGCGTGTGGTAGGC 60.179 55.000 2.85 0.00 40.51 3.93
496 500 1.219124 CAGATGCGTGTGGTAGGCT 59.781 57.895 0.00 0.00 40.72 4.58
497 501 1.086067 CAGATGCGTGTGGTAGGCTG 61.086 60.000 0.00 0.00 40.72 4.85
498 502 1.815421 GATGCGTGTGGTAGGCTGG 60.815 63.158 0.00 0.00 40.72 4.85
499 503 2.521958 GATGCGTGTGGTAGGCTGGT 62.522 60.000 0.00 0.00 40.72 4.00
500 504 1.261938 ATGCGTGTGGTAGGCTGGTA 61.262 55.000 0.00 0.00 40.72 3.25
501 505 1.153628 GCGTGTGGTAGGCTGGTAG 60.154 63.158 0.00 0.00 37.22 3.18
502 506 1.153628 CGTGTGGTAGGCTGGTAGC 60.154 63.158 0.00 0.00 41.46 3.58
503 507 1.153628 GTGTGGTAGGCTGGTAGCG 60.154 63.158 0.00 0.00 43.62 4.26
517 521 2.158871 TGGTAGCGCTATTCCCGAAAAT 60.159 45.455 21.96 0.00 0.00 1.82
530 534 1.065031 CGAAAATTGAAGCCCGTGCG 61.065 55.000 0.00 0.00 44.33 5.34
542 546 4.443263 CGTGCGCGTACGACAACG 62.443 66.667 40.24 19.41 46.46 4.10
546 550 2.427245 CGCGTACGACAACGGTGA 60.427 61.111 21.65 0.00 43.93 4.02
547 551 1.798725 CGCGTACGACAACGGTGAT 60.799 57.895 21.65 0.00 43.93 3.06
568 572 5.414454 TGATATTCCCGAAAACTGACAAAGG 59.586 40.000 0.00 0.00 0.00 3.11
569 573 2.721425 TCCCGAAAACTGACAAAGGT 57.279 45.000 0.00 0.00 0.00 3.50
570 574 3.842007 TCCCGAAAACTGACAAAGGTA 57.158 42.857 0.00 0.00 0.00 3.08
571 575 3.469739 TCCCGAAAACTGACAAAGGTAC 58.530 45.455 0.00 0.00 0.00 3.34
572 576 2.551032 CCCGAAAACTGACAAAGGTACC 59.449 50.000 2.73 2.73 0.00 3.34
573 577 3.473625 CCGAAAACTGACAAAGGTACCT 58.526 45.455 9.21 9.21 0.00 3.08
574 578 3.881089 CCGAAAACTGACAAAGGTACCTT 59.119 43.478 21.96 21.96 37.98 3.50
575 579 4.337274 CCGAAAACTGACAAAGGTACCTTT 59.663 41.667 30.43 30.43 45.98 3.11
584 588 3.503800 AAAGGTACCTTTGGGAGTGTC 57.496 47.619 34.06 0.00 43.72 3.67
585 589 0.974383 AGGTACCTTTGGGAGTGTCG 59.026 55.000 9.21 0.00 36.25 4.35
586 590 0.971386 GGTACCTTTGGGAGTGTCGA 59.029 55.000 4.06 0.00 36.25 4.20
587 591 1.337541 GGTACCTTTGGGAGTGTCGAC 60.338 57.143 9.11 9.11 36.25 4.20
654 658 3.769369 TTACCGCCGTGCACCCAAA 62.769 57.895 12.15 0.00 0.00 3.28
666 671 2.045340 CCCAAACTACCCGCCCAG 60.045 66.667 0.00 0.00 0.00 4.45
705 710 0.249868 CCCGTGCTCTTCACTTCACA 60.250 55.000 0.00 0.00 43.46 3.58
707 712 2.146342 CCGTGCTCTTCACTTCACAAT 58.854 47.619 0.00 0.00 43.46 2.71
709 714 3.369147 CCGTGCTCTTCACTTCACAATAG 59.631 47.826 0.00 0.00 43.46 1.73
711 716 3.686726 GTGCTCTTCACTTCACAATAGGG 59.313 47.826 0.00 0.00 42.38 3.53
721 748 3.475566 TCACAATAGGGATAGCAGCAC 57.524 47.619 0.00 0.00 0.00 4.40
825 852 3.947910 CCATGTTTCACTTGGCTGAAT 57.052 42.857 0.00 0.00 36.75 2.57
1010 1042 4.707448 AGTAGGTGACAAGATGAAGACGAT 59.293 41.667 0.00 0.00 0.00 3.73
1042 1074 2.112522 GCATCATCGTCACACTAGTCG 58.887 52.381 0.00 0.00 0.00 4.18
1049 1081 1.795525 CGTCACACTAGTCGCATCAGG 60.796 57.143 0.00 0.00 0.00 3.86
1052 1084 2.164422 TCACACTAGTCGCATCAGGAAG 59.836 50.000 0.00 0.00 0.00 3.46
1309 1344 2.106332 CCTACTACGGCCCAAGCG 59.894 66.667 0.00 0.00 41.24 4.68
1311 1346 4.151582 TACTACGGCCCAAGCGCC 62.152 66.667 2.29 0.00 46.13 6.53
1824 1859 8.803235 TGTATATGTCTACTCTCTCTCTCTCTC 58.197 40.741 0.00 0.00 0.00 3.20
1828 1863 5.594725 TGTCTACTCTCTCTCTCTCTCTCTC 59.405 48.000 0.00 0.00 0.00 3.20
1829 1864 5.830991 GTCTACTCTCTCTCTCTCTCTCTCT 59.169 48.000 0.00 0.00 0.00 3.10
1832 1867 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
1833 1868 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1834 1869 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1835 1870 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1836 1871 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1837 1872 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1838 1873 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1839 1874 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1840 1875 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1841 1876 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1842 1877 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1843 1878 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1844 1879 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1845 1880 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1846 1881 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1848 1883 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1850 1885 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1851 1886 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1852 1887 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1853 1888 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1854 1889 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1855 1890 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1858 1893 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1859 1894 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1860 1895 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1862 1897 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1863 1898 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1864 1899 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1866 1901 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1867 1902 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1868 1903 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1870 1905 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2365 2402 9.764363 GTCACCTATTCATACATGAGTGAATTA 57.236 33.333 24.47 14.78 41.03 1.40
2480 2519 3.057019 GCTTTTTAGGGGTCTTTTTGCG 58.943 45.455 0.00 0.00 0.00 4.85
2562 2613 6.891624 TCTATCATAATCATGCTCAAAACGC 58.108 36.000 0.00 0.00 31.73 4.84
2573 2624 0.891904 TCAAAACGCCCTAAGCCACC 60.892 55.000 0.00 0.00 38.78 4.61
2581 2632 2.025863 GCCCTAAGCCACCGACTAGTA 61.026 57.143 0.00 0.00 34.35 1.82
2591 2642 4.719040 CCACCGACTAGTATTTTTGCAAC 58.281 43.478 0.00 0.00 0.00 4.17
2592 2643 4.379082 CCACCGACTAGTATTTTTGCAACC 60.379 45.833 0.00 0.00 0.00 3.77
2651 2705 9.405587 CACAATTCCGTTACAATTCACTTATTT 57.594 29.630 0.00 0.00 0.00 1.40
2691 2745 4.753516 TCTAGCTTTGGAATGGATCGAA 57.246 40.909 0.00 0.00 0.00 3.71
2830 2885 3.028969 GAGGGATACGTCGTCGGG 58.971 66.667 0.00 0.00 42.29 5.14
2872 2927 0.174162 CGGGTACGGTGAAGGTAAGG 59.826 60.000 0.00 0.00 36.18 2.69
2878 2933 1.538687 CGGTGAAGGTAAGGGACGGT 61.539 60.000 0.00 0.00 0.00 4.83
3108 3183 1.896220 TGCACTGACATGGTTTCCTC 58.104 50.000 0.00 0.00 0.00 3.71
3121 3196 2.223409 GGTTTCCTCGCTCGTTGTTTTT 60.223 45.455 0.00 0.00 0.00 1.94
3230 3307 5.400485 GCGAGTTATACATCGTTTCCGTAAT 59.600 40.000 7.41 0.00 40.97 1.89
3231 3308 6.074676 GCGAGTTATACATCGTTTCCGTAATT 60.075 38.462 7.41 0.00 40.97 1.40
3245 3322 7.163032 CGTTTCCGTAATTAAGAAAATAAGGCG 59.837 37.037 11.55 7.76 31.71 5.52
3324 3401 4.095782 GTGGAGTAATGTTGTGTTGTGTGT 59.904 41.667 0.00 0.00 0.00 3.72
3387 3492 8.771920 TGTATGTATGGCTAAATTCGAATAGG 57.228 34.615 11.83 5.88 0.00 2.57
3463 3568 0.607217 TTGCTGGTCTCGTCCGTCTA 60.607 55.000 0.00 0.00 0.00 2.59
3477 3582 4.352887 GTCCGTCTATCTACACTTTCTGC 58.647 47.826 0.00 0.00 0.00 4.26
3487 3592 9.818796 CTATCTACACTTTCTGCTTTTCTTTTC 57.181 33.333 0.00 0.00 0.00 2.29
3561 3666 9.185680 AGGCTTAATTAATACTCCATTCGTTTT 57.814 29.630 0.00 0.00 0.00 2.43
3576 3681 8.852135 TCCATTCGTTTTAAAATAAGTGTCCTT 58.148 29.630 3.52 0.00 34.56 3.36
3978 4145 1.739667 CCCTGTACGCCATCATCGA 59.260 57.895 0.00 0.00 0.00 3.59
4027 4194 2.610859 GGCCTCTTCCCTGACCCA 60.611 66.667 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.812476 TTGCCATCCTCGACGGCG 62.812 66.667 2.87 2.87 44.52 6.46
16 17 3.195698 GTTGCCATCCTCGACGGC 61.196 66.667 0.00 3.96 41.69 5.68
17 18 1.519455 GAGTTGCCATCCTCGACGG 60.519 63.158 0.00 0.00 0.00 4.79
18 19 4.094684 GAGTTGCCATCCTCGACG 57.905 61.111 0.00 0.00 0.00 5.12
22 23 2.109126 GCCACGAGTTGCCATCCTC 61.109 63.158 0.00 0.00 0.00 3.71
23 24 2.045926 GCCACGAGTTGCCATCCT 60.046 61.111 0.00 0.00 0.00 3.24
24 25 3.499737 CGCCACGAGTTGCCATCC 61.500 66.667 0.00 0.00 0.00 3.51
25 26 3.499737 CCGCCACGAGTTGCCATC 61.500 66.667 0.00 0.00 0.00 3.51
44 45 4.115199 ATTCCCACCCAGCCGAGC 62.115 66.667 0.00 0.00 0.00 5.03
45 46 2.190578 GATTCCCACCCAGCCGAG 59.809 66.667 0.00 0.00 0.00 4.63
46 47 2.285368 AGATTCCCACCCAGCCGA 60.285 61.111 0.00 0.00 0.00 5.54
47 48 2.190578 GAGATTCCCACCCAGCCG 59.809 66.667 0.00 0.00 0.00 5.52
48 49 2.190578 CGAGATTCCCACCCAGCC 59.809 66.667 0.00 0.00 0.00 4.85
49 50 2.514824 GCGAGATTCCCACCCAGC 60.515 66.667 0.00 0.00 0.00 4.85
50 51 1.153289 CAGCGAGATTCCCACCCAG 60.153 63.158 0.00 0.00 0.00 4.45
51 52 2.989639 CAGCGAGATTCCCACCCA 59.010 61.111 0.00 0.00 0.00 4.51
52 53 2.514824 GCAGCGAGATTCCCACCC 60.515 66.667 0.00 0.00 0.00 4.61
53 54 1.817099 CTGCAGCGAGATTCCCACC 60.817 63.158 0.00 0.00 0.00 4.61
54 55 0.674895 AACTGCAGCGAGATTCCCAC 60.675 55.000 15.27 0.00 0.00 4.61
55 56 0.391661 GAACTGCAGCGAGATTCCCA 60.392 55.000 15.27 0.00 0.00 4.37
56 57 1.092345 GGAACTGCAGCGAGATTCCC 61.092 60.000 15.27 0.00 34.01 3.97
57 58 1.092345 GGGAACTGCAGCGAGATTCC 61.092 60.000 19.80 19.80 38.50 3.01
58 59 0.391661 TGGGAACTGCAGCGAGATTC 60.392 55.000 15.27 9.56 0.00 2.52
59 60 0.036732 TTGGGAACTGCAGCGAGATT 59.963 50.000 15.27 0.00 0.00 2.40
60 61 0.036732 TTTGGGAACTGCAGCGAGAT 59.963 50.000 15.27 0.00 0.00 2.75
61 62 0.036732 ATTTGGGAACTGCAGCGAGA 59.963 50.000 15.27 0.00 0.00 4.04
62 63 0.169672 CATTTGGGAACTGCAGCGAG 59.830 55.000 15.27 0.00 0.00 5.03
63 64 1.243342 CCATTTGGGAACTGCAGCGA 61.243 55.000 15.27 0.00 40.01 4.93
64 65 1.213537 CCATTTGGGAACTGCAGCG 59.786 57.895 15.27 0.00 40.01 5.18
65 66 1.079612 GCCATTTGGGAACTGCAGC 60.080 57.895 15.27 0.00 40.01 5.25
66 67 0.529378 GAGCCATTTGGGAACTGCAG 59.471 55.000 13.48 13.48 40.01 4.41
67 68 1.243342 CGAGCCATTTGGGAACTGCA 61.243 55.000 0.00 0.00 40.01 4.41
68 69 1.244019 ACGAGCCATTTGGGAACTGC 61.244 55.000 0.00 0.00 40.01 4.40
69 70 0.523072 CACGAGCCATTTGGGAACTG 59.477 55.000 0.00 0.00 40.01 3.16
70 71 1.244019 GCACGAGCCATTTGGGAACT 61.244 55.000 0.00 0.00 40.01 3.01
71 72 1.212751 GCACGAGCCATTTGGGAAC 59.787 57.895 0.00 0.00 40.01 3.62
72 73 1.074775 AGCACGAGCCATTTGGGAA 59.925 52.632 0.00 0.00 43.56 3.97
73 74 1.675310 CAGCACGAGCCATTTGGGA 60.675 57.895 0.00 0.00 43.56 4.37
74 75 1.973281 ACAGCACGAGCCATTTGGG 60.973 57.895 0.00 0.00 43.56 4.12
75 76 1.210931 CACAGCACGAGCCATTTGG 59.789 57.895 0.00 0.00 43.56 3.28
76 77 0.110056 GACACAGCACGAGCCATTTG 60.110 55.000 0.00 0.00 43.56 2.32
77 78 1.568612 CGACACAGCACGAGCCATTT 61.569 55.000 0.00 0.00 43.56 2.32
78 79 2.029288 CGACACAGCACGAGCCATT 61.029 57.895 0.00 0.00 43.56 3.16
79 80 2.433145 CGACACAGCACGAGCCAT 60.433 61.111 0.00 0.00 43.56 4.40
82 83 3.771491 CTGCGACACAGCACGAGC 61.771 66.667 0.00 0.00 42.92 5.03
83 84 2.050077 TCTGCGACACAGCACGAG 60.050 61.111 0.00 0.00 46.76 4.18
84 85 1.512156 TAGTCTGCGACACAGCACGA 61.512 55.000 10.52 0.00 46.76 4.35
85 86 1.067743 CTAGTCTGCGACACAGCACG 61.068 60.000 10.52 0.00 46.76 5.34
86 87 0.039074 ACTAGTCTGCGACACAGCAC 60.039 55.000 10.52 0.00 46.76 4.40
87 88 1.468914 CTACTAGTCTGCGACACAGCA 59.531 52.381 0.00 0.00 46.76 4.41
88 89 1.202200 CCTACTAGTCTGCGACACAGC 60.202 57.143 0.00 0.00 46.76 4.40
90 91 2.082231 GTCCTACTAGTCTGCGACACA 58.918 52.381 0.00 0.00 34.60 3.72
91 92 1.401199 GGTCCTACTAGTCTGCGACAC 59.599 57.143 0.00 0.00 34.60 3.67
92 93 1.003928 TGGTCCTACTAGTCTGCGACA 59.996 52.381 0.00 0.00 34.60 4.35
93 94 1.747709 TGGTCCTACTAGTCTGCGAC 58.252 55.000 0.00 0.84 0.00 5.19
94 95 2.366533 CTTGGTCCTACTAGTCTGCGA 58.633 52.381 0.00 0.00 0.00 5.10
95 96 1.405821 CCTTGGTCCTACTAGTCTGCG 59.594 57.143 0.00 0.00 0.00 5.18
96 97 1.137282 GCCTTGGTCCTACTAGTCTGC 59.863 57.143 0.00 0.00 0.00 4.26
97 98 1.405821 CGCCTTGGTCCTACTAGTCTG 59.594 57.143 0.00 0.00 0.00 3.51
98 99 1.685491 CCGCCTTGGTCCTACTAGTCT 60.685 57.143 0.00 0.00 0.00 3.24
99 100 0.745468 CCGCCTTGGTCCTACTAGTC 59.255 60.000 0.00 0.00 0.00 2.59
100 101 0.333993 TCCGCCTTGGTCCTACTAGT 59.666 55.000 0.00 0.00 39.52 2.57
101 102 0.745468 GTCCGCCTTGGTCCTACTAG 59.255 60.000 0.00 0.00 39.52 2.57
102 103 0.040058 TGTCCGCCTTGGTCCTACTA 59.960 55.000 0.00 0.00 39.52 1.82
103 104 1.229082 TGTCCGCCTTGGTCCTACT 60.229 57.895 0.00 0.00 39.52 2.57
104 105 1.079336 GTGTCCGCCTTGGTCCTAC 60.079 63.158 0.00 0.00 39.52 3.18
105 106 2.642254 CGTGTCCGCCTTGGTCCTA 61.642 63.158 0.00 0.00 39.52 2.94
106 107 4.003788 CGTGTCCGCCTTGGTCCT 62.004 66.667 0.00 0.00 39.52 3.85
110 111 4.760047 CTCCCGTGTCCGCCTTGG 62.760 72.222 0.00 0.00 40.09 3.61
111 112 4.760047 CCTCCCGTGTCCGCCTTG 62.760 72.222 0.00 0.00 0.00 3.61
115 116 3.834799 CTACCCTCCCGTGTCCGC 61.835 72.222 0.00 0.00 0.00 5.54
116 117 3.834799 GCTACCCTCCCGTGTCCG 61.835 72.222 0.00 0.00 0.00 4.79
117 118 2.682494 TGCTACCCTCCCGTGTCC 60.682 66.667 0.00 0.00 0.00 4.02
118 119 2.893398 CTGCTACCCTCCCGTGTC 59.107 66.667 0.00 0.00 0.00 3.67
119 120 3.391382 GCTGCTACCCTCCCGTGT 61.391 66.667 0.00 0.00 0.00 4.49
120 121 4.514577 CGCTGCTACCCTCCCGTG 62.515 72.222 0.00 0.00 0.00 4.94
123 124 3.851128 GTCCGCTGCTACCCTCCC 61.851 72.222 0.00 0.00 0.00 4.30
124 125 4.208686 CGTCCGCTGCTACCCTCC 62.209 72.222 0.00 0.00 0.00 4.30
125 126 3.127352 CTCGTCCGCTGCTACCCTC 62.127 68.421 0.00 0.00 0.00 4.30
126 127 3.141488 CTCGTCCGCTGCTACCCT 61.141 66.667 0.00 0.00 0.00 4.34
127 128 3.127352 CTCTCGTCCGCTGCTACCC 62.127 68.421 0.00 0.00 0.00 3.69
128 129 2.409651 CTCTCGTCCGCTGCTACC 59.590 66.667 0.00 0.00 0.00 3.18
129 130 2.054140 CTCCTCTCGTCCGCTGCTAC 62.054 65.000 0.00 0.00 0.00 3.58
130 131 1.820056 CTCCTCTCGTCCGCTGCTA 60.820 63.158 0.00 0.00 0.00 3.49
131 132 3.137459 CTCCTCTCGTCCGCTGCT 61.137 66.667 0.00 0.00 0.00 4.24
132 133 4.863925 GCTCCTCTCGTCCGCTGC 62.864 72.222 0.00 0.00 0.00 5.25
133 134 4.544689 CGCTCCTCTCGTCCGCTG 62.545 72.222 0.00 0.00 0.00 5.18
137 138 4.200283 CAGGCGCTCCTCTCGTCC 62.200 72.222 7.64 0.00 41.93 4.79
138 139 4.863925 GCAGGCGCTCCTCTCGTC 62.864 72.222 7.64 0.00 41.93 4.20
148 149 3.595108 GACGGACAAAAGCAGGCGC 62.595 63.158 0.00 0.00 38.99 6.53
149 150 2.556287 GACGGACAAAAGCAGGCG 59.444 61.111 0.00 0.00 0.00 5.52
150 151 2.251642 ACGACGGACAAAAGCAGGC 61.252 57.895 0.00 0.00 0.00 4.85
151 152 1.569493 CACGACGGACAAAAGCAGG 59.431 57.895 0.00 0.00 0.00 4.85
152 153 0.878523 TCCACGACGGACAAAAGCAG 60.879 55.000 0.00 0.00 39.64 4.24
153 154 1.144276 TCCACGACGGACAAAAGCA 59.856 52.632 0.00 0.00 39.64 3.91
154 155 4.036977 TCCACGACGGACAAAAGC 57.963 55.556 0.00 0.00 39.64 3.51
161 162 1.004320 CAAATGGGTCCACGACGGA 60.004 57.895 0.00 0.00 43.61 4.69
162 163 1.302192 ACAAATGGGTCCACGACGG 60.302 57.895 0.00 0.00 32.65 4.79
163 164 1.573829 CCACAAATGGGTCCACGACG 61.574 60.000 0.00 0.00 43.04 5.12
164 165 2.253513 CCACAAATGGGTCCACGAC 58.746 57.895 0.00 0.00 43.04 4.34
165 166 4.811206 CCACAAATGGGTCCACGA 57.189 55.556 0.00 0.00 43.04 4.35
174 175 3.009026 GCCCAAATTTAGGCCACAAATG 58.991 45.455 15.94 6.36 43.76 2.32
175 176 3.348647 GCCCAAATTTAGGCCACAAAT 57.651 42.857 15.94 7.57 43.76 2.32
176 177 2.849294 GCCCAAATTTAGGCCACAAA 57.151 45.000 15.94 5.09 43.76 2.83
183 184 3.055891 CCCAAACTGAGCCCAAATTTAGG 60.056 47.826 0.00 0.00 0.00 2.69
184 185 3.578282 ACCCAAACTGAGCCCAAATTTAG 59.422 43.478 0.00 0.00 0.00 1.85
185 186 3.576550 GACCCAAACTGAGCCCAAATTTA 59.423 43.478 0.00 0.00 0.00 1.40
186 187 2.368548 GACCCAAACTGAGCCCAAATTT 59.631 45.455 0.00 0.00 0.00 1.82
187 188 1.970640 GACCCAAACTGAGCCCAAATT 59.029 47.619 0.00 0.00 0.00 1.82
188 189 1.632589 GACCCAAACTGAGCCCAAAT 58.367 50.000 0.00 0.00 0.00 2.32
189 190 0.821711 CGACCCAAACTGAGCCCAAA 60.822 55.000 0.00 0.00 0.00 3.28
190 191 1.228124 CGACCCAAACTGAGCCCAA 60.228 57.895 0.00 0.00 0.00 4.12
191 192 2.429930 CGACCCAAACTGAGCCCA 59.570 61.111 0.00 0.00 0.00 5.36
192 193 2.359975 CCGACCCAAACTGAGCCC 60.360 66.667 0.00 0.00 0.00 5.19
193 194 2.359975 CCCGACCCAAACTGAGCC 60.360 66.667 0.00 0.00 0.00 4.70
194 195 2.359975 CCCCGACCCAAACTGAGC 60.360 66.667 0.00 0.00 0.00 4.26
195 196 1.302511 CACCCCGACCCAAACTGAG 60.303 63.158 0.00 0.00 0.00 3.35
196 197 2.824880 CCACCCCGACCCAAACTGA 61.825 63.158 0.00 0.00 0.00 3.41
197 198 2.137177 ATCCACCCCGACCCAAACTG 62.137 60.000 0.00 0.00 0.00 3.16
198 199 1.850755 ATCCACCCCGACCCAAACT 60.851 57.895 0.00 0.00 0.00 2.66
199 200 1.677633 CATCCACCCCGACCCAAAC 60.678 63.158 0.00 0.00 0.00 2.93
200 201 1.211567 ATCATCCACCCCGACCCAAA 61.212 55.000 0.00 0.00 0.00 3.28
201 202 0.326713 TATCATCCACCCCGACCCAA 60.327 55.000 0.00 0.00 0.00 4.12
202 203 0.326713 TTATCATCCACCCCGACCCA 60.327 55.000 0.00 0.00 0.00 4.51
203 204 0.841289 TTTATCATCCACCCCGACCC 59.159 55.000 0.00 0.00 0.00 4.46
204 205 1.808891 CGTTTATCATCCACCCCGACC 60.809 57.143 0.00 0.00 0.00 4.79
205 206 1.578583 CGTTTATCATCCACCCCGAC 58.421 55.000 0.00 0.00 0.00 4.79
206 207 0.466543 CCGTTTATCATCCACCCCGA 59.533 55.000 0.00 0.00 0.00 5.14
207 208 0.466543 TCCGTTTATCATCCACCCCG 59.533 55.000 0.00 0.00 0.00 5.73
208 209 1.210967 TGTCCGTTTATCATCCACCCC 59.789 52.381 0.00 0.00 0.00 4.95
209 210 2.561569 CTGTCCGTTTATCATCCACCC 58.438 52.381 0.00 0.00 0.00 4.61
210 211 1.940613 GCTGTCCGTTTATCATCCACC 59.059 52.381 0.00 0.00 0.00 4.61
211 212 2.609459 CTGCTGTCCGTTTATCATCCAC 59.391 50.000 0.00 0.00 0.00 4.02
212 213 2.499693 TCTGCTGTCCGTTTATCATCCA 59.500 45.455 0.00 0.00 0.00 3.41
213 214 2.866762 GTCTGCTGTCCGTTTATCATCC 59.133 50.000 0.00 0.00 0.00 3.51
214 215 2.535984 CGTCTGCTGTCCGTTTATCATC 59.464 50.000 0.00 0.00 0.00 2.92
215 216 2.540515 CGTCTGCTGTCCGTTTATCAT 58.459 47.619 0.00 0.00 0.00 2.45
216 217 1.403647 CCGTCTGCTGTCCGTTTATCA 60.404 52.381 0.00 0.00 0.00 2.15
217 218 1.135199 TCCGTCTGCTGTCCGTTTATC 60.135 52.381 0.00 0.00 0.00 1.75
218 219 0.892755 TCCGTCTGCTGTCCGTTTAT 59.107 50.000 0.00 0.00 0.00 1.40
219 220 0.038892 GTCCGTCTGCTGTCCGTTTA 60.039 55.000 0.00 0.00 0.00 2.01
220 221 1.300697 GTCCGTCTGCTGTCCGTTT 60.301 57.895 0.00 0.00 0.00 3.60
221 222 2.338984 GTCCGTCTGCTGTCCGTT 59.661 61.111 0.00 0.00 0.00 4.44
222 223 3.681835 GGTCCGTCTGCTGTCCGT 61.682 66.667 0.00 0.00 0.00 4.69
223 224 3.374402 AGGTCCGTCTGCTGTCCG 61.374 66.667 0.00 0.00 0.00 4.79
224 225 2.262915 CAGGTCCGTCTGCTGTCC 59.737 66.667 0.00 0.00 0.00 4.02
235 236 2.665185 AAACAGACGCGCAGGTCC 60.665 61.111 5.73 0.00 37.66 4.46
236 237 2.551270 CAAACAGACGCGCAGGTC 59.449 61.111 5.73 7.89 37.19 3.85
237 238 2.972505 CCAAACAGACGCGCAGGT 60.973 61.111 5.73 0.00 0.00 4.00
238 239 3.726517 CCCAAACAGACGCGCAGG 61.727 66.667 5.73 0.00 0.00 4.85
239 240 2.954753 GACCCAAACAGACGCGCAG 61.955 63.158 5.73 2.42 0.00 5.18
240 241 2.970324 GACCCAAACAGACGCGCA 60.970 61.111 5.73 0.00 0.00 6.09
241 242 4.072088 CGACCCAAACAGACGCGC 62.072 66.667 5.73 0.00 0.00 6.86
242 243 4.072088 GCGACCCAAACAGACGCG 62.072 66.667 3.53 3.53 39.90 6.01
243 244 3.723348 GGCGACCCAAACAGACGC 61.723 66.667 0.00 0.00 46.79 5.19
263 264 1.534163 GGACAGAAAACGTAGCCCAAC 59.466 52.381 0.00 0.00 0.00 3.77
264 265 1.874739 CGGACAGAAAACGTAGCCCAA 60.875 52.381 0.00 0.00 0.00 4.12
265 266 0.320073 CGGACAGAAAACGTAGCCCA 60.320 55.000 0.00 0.00 0.00 5.36
266 267 1.017701 CCGGACAGAAAACGTAGCCC 61.018 60.000 0.00 0.00 0.00 5.19
267 268 0.037975 TCCGGACAGAAAACGTAGCC 60.038 55.000 0.00 0.00 0.00 3.93
268 269 1.458445 GTTCCGGACAGAAAACGTAGC 59.542 52.381 1.83 0.00 0.00 3.58
269 270 2.985139 GAGTTCCGGACAGAAAACGTAG 59.015 50.000 1.83 0.00 0.00 3.51
270 271 2.288395 GGAGTTCCGGACAGAAAACGTA 60.288 50.000 1.83 0.00 0.00 3.57
271 272 1.539712 GGAGTTCCGGACAGAAAACGT 60.540 52.381 1.83 0.00 0.00 3.99
272 273 1.145803 GGAGTTCCGGACAGAAAACG 58.854 55.000 1.83 0.00 0.00 3.60
284 285 2.347731 GTTTGAGTCATCCGGAGTTCC 58.652 52.381 11.34 0.00 0.00 3.62
285 286 1.993370 CGTTTGAGTCATCCGGAGTTC 59.007 52.381 11.34 5.33 0.00 3.01
286 287 1.337823 CCGTTTGAGTCATCCGGAGTT 60.338 52.381 20.64 0.00 41.08 3.01
287 288 0.246635 CCGTTTGAGTCATCCGGAGT 59.753 55.000 20.64 0.00 41.08 3.85
288 289 0.530744 TCCGTTTGAGTCATCCGGAG 59.469 55.000 22.76 2.05 42.33 4.63
289 290 0.245539 GTCCGTTTGAGTCATCCGGA 59.754 55.000 22.76 22.76 44.74 5.14
290 291 0.037697 TGTCCGTTTGAGTCATCCGG 60.038 55.000 19.68 19.68 39.98 5.14
291 292 1.790755 TTGTCCGTTTGAGTCATCCG 58.209 50.000 0.00 0.00 0.00 4.18
292 293 4.215399 TCATTTTGTCCGTTTGAGTCATCC 59.785 41.667 0.00 0.00 0.00 3.51
293 294 5.356882 TCATTTTGTCCGTTTGAGTCATC 57.643 39.130 0.00 0.00 0.00 2.92
294 295 5.766150 TTCATTTTGTCCGTTTGAGTCAT 57.234 34.783 0.00 0.00 0.00 3.06
295 296 5.559991 CGATTCATTTTGTCCGTTTGAGTCA 60.560 40.000 0.00 0.00 0.00 3.41
296 297 4.846137 CGATTCATTTTGTCCGTTTGAGTC 59.154 41.667 0.00 0.00 0.00 3.36
297 298 4.783242 CGATTCATTTTGTCCGTTTGAGT 58.217 39.130 0.00 0.00 0.00 3.41
298 299 3.603770 GCGATTCATTTTGTCCGTTTGAG 59.396 43.478 0.00 0.00 0.00 3.02
299 300 3.003793 TGCGATTCATTTTGTCCGTTTGA 59.996 39.130 0.00 0.00 0.00 2.69
300 301 3.119463 GTGCGATTCATTTTGTCCGTTTG 59.881 43.478 0.00 0.00 0.00 2.93
301 302 3.305110 GTGCGATTCATTTTGTCCGTTT 58.695 40.909 0.00 0.00 0.00 3.60
302 303 2.351350 GGTGCGATTCATTTTGTCCGTT 60.351 45.455 0.00 0.00 0.00 4.44
303 304 1.199097 GGTGCGATTCATTTTGTCCGT 59.801 47.619 0.00 0.00 0.00 4.69
304 305 1.198867 TGGTGCGATTCATTTTGTCCG 59.801 47.619 0.00 0.00 0.00 4.79
305 306 3.508744 ATGGTGCGATTCATTTTGTCC 57.491 42.857 0.00 0.00 0.00 4.02
306 307 6.586082 ACTTTAATGGTGCGATTCATTTTGTC 59.414 34.615 0.00 0.00 35.50 3.18
307 308 6.454795 ACTTTAATGGTGCGATTCATTTTGT 58.545 32.000 0.00 0.00 35.50 2.83
308 309 6.949578 ACTTTAATGGTGCGATTCATTTTG 57.050 33.333 0.00 0.00 35.50 2.44
309 310 6.128580 GCAACTTTAATGGTGCGATTCATTTT 60.129 34.615 14.78 0.00 35.50 1.82
310 311 5.348451 GCAACTTTAATGGTGCGATTCATTT 59.652 36.000 14.78 0.00 35.50 2.32
311 312 4.864247 GCAACTTTAATGGTGCGATTCATT 59.136 37.500 14.78 0.00 37.38 2.57
312 313 4.158394 AGCAACTTTAATGGTGCGATTCAT 59.842 37.500 21.59 4.60 0.00 2.57
313 314 3.505680 AGCAACTTTAATGGTGCGATTCA 59.494 39.130 21.59 0.00 0.00 2.57
314 315 4.096732 AGCAACTTTAATGGTGCGATTC 57.903 40.909 21.59 0.37 0.00 2.52
315 316 3.758554 AGAGCAACTTTAATGGTGCGATT 59.241 39.130 21.59 8.23 0.00 3.34
316 317 3.347216 AGAGCAACTTTAATGGTGCGAT 58.653 40.909 21.59 13.54 0.00 4.58
317 318 2.778299 AGAGCAACTTTAATGGTGCGA 58.222 42.857 21.59 0.00 0.00 5.10
318 319 3.559238 AAGAGCAACTTTAATGGTGCG 57.441 42.857 21.59 1.52 34.94 5.34
319 320 5.412904 ACTCTAAGAGCAACTTTAATGGTGC 59.587 40.000 20.63 20.63 39.72 5.01
320 321 8.723942 ATACTCTAAGAGCAACTTTAATGGTG 57.276 34.615 2.07 2.07 39.72 4.17
321 322 9.740710 AAATACTCTAAGAGCAACTTTAATGGT 57.259 29.630 1.81 0.00 39.72 3.55
325 326 9.787435 TCCAAAATACTCTAAGAGCAACTTTAA 57.213 29.630 1.81 0.00 39.72 1.52
326 327 9.216117 GTCCAAAATACTCTAAGAGCAACTTTA 57.784 33.333 1.81 0.00 39.72 1.85
327 328 7.719633 TGTCCAAAATACTCTAAGAGCAACTTT 59.280 33.333 1.81 0.00 39.72 2.66
328 329 7.224297 TGTCCAAAATACTCTAAGAGCAACTT 58.776 34.615 0.00 2.10 42.04 2.66
329 330 6.769512 TGTCCAAAATACTCTAAGAGCAACT 58.230 36.000 0.00 0.00 32.04 3.16
330 331 6.651225 ACTGTCCAAAATACTCTAAGAGCAAC 59.349 38.462 0.00 0.00 32.04 4.17
331 332 6.769512 ACTGTCCAAAATACTCTAAGAGCAA 58.230 36.000 0.00 0.00 32.04 3.91
332 333 6.360370 ACTGTCCAAAATACTCTAAGAGCA 57.640 37.500 0.00 0.00 32.04 4.26
333 334 8.773404 TTTACTGTCCAAAATACTCTAAGAGC 57.227 34.615 0.00 0.00 32.04 4.09
370 371 9.973450 TTGATGCTACTTATATCAAGACTTCTC 57.027 33.333 0.00 0.00 36.28 2.87
391 392 6.368791 TCGGAACAAAGTCTATCAAGTTGATG 59.631 38.462 25.48 16.01 37.70 3.07
443 444 0.179040 TGGAACCCAAACCTCGTGAC 60.179 55.000 0.00 0.00 0.00 3.67
457 461 2.859165 TCTCCATGTCCTGTTGGAAC 57.141 50.000 0.00 0.00 45.18 3.62
460 464 2.502947 TCTGATCTCCATGTCCTGTTGG 59.497 50.000 0.00 0.00 0.00 3.77
494 498 1.664965 CGGGAATAGCGCTACCAGC 60.665 63.158 21.49 9.09 38.02 4.85
495 499 0.387929 TTCGGGAATAGCGCTACCAG 59.612 55.000 21.49 17.70 0.00 4.00
496 500 0.825410 TTTCGGGAATAGCGCTACCA 59.175 50.000 21.49 0.00 0.00 3.25
497 501 1.944032 TTTTCGGGAATAGCGCTACC 58.056 50.000 21.49 17.29 0.00 3.18
498 502 3.558418 TCAATTTTCGGGAATAGCGCTAC 59.442 43.478 21.49 7.99 0.00 3.58
499 503 3.799366 TCAATTTTCGGGAATAGCGCTA 58.201 40.909 21.30 21.30 0.00 4.26
500 504 2.639065 TCAATTTTCGGGAATAGCGCT 58.361 42.857 17.26 17.26 0.00 5.92
501 505 3.363178 CTTCAATTTTCGGGAATAGCGC 58.637 45.455 0.00 0.00 0.00 5.92
502 506 3.363178 GCTTCAATTTTCGGGAATAGCG 58.637 45.455 0.00 0.00 0.00 4.26
503 507 3.490933 GGGCTTCAATTTTCGGGAATAGC 60.491 47.826 0.00 0.00 0.00 2.97
517 521 4.666397 TACGCGCACGGGCTTCAA 62.666 61.111 8.62 0.00 46.04 2.69
530 534 1.831343 ATATCACCGTTGTCGTACGC 58.169 50.000 11.24 6.57 40.10 4.42
535 539 1.205657 CGGGAATATCACCGTTGTCG 58.794 55.000 9.26 0.00 44.85 4.35
542 546 4.258543 TGTCAGTTTTCGGGAATATCACC 58.741 43.478 0.00 0.00 0.00 4.02
546 550 5.321927 ACCTTTGTCAGTTTTCGGGAATAT 58.678 37.500 0.00 0.00 0.00 1.28
547 551 4.721132 ACCTTTGTCAGTTTTCGGGAATA 58.279 39.130 0.00 0.00 0.00 1.75
568 572 1.668047 CGTCGACACTCCCAAAGGTAC 60.668 57.143 17.16 0.00 0.00 3.34
569 573 0.599558 CGTCGACACTCCCAAAGGTA 59.400 55.000 17.16 0.00 0.00 3.08
570 574 1.366366 CGTCGACACTCCCAAAGGT 59.634 57.895 17.16 0.00 0.00 3.50
571 575 0.944311 CACGTCGACACTCCCAAAGG 60.944 60.000 17.16 0.00 0.00 3.11
572 576 1.557443 GCACGTCGACACTCCCAAAG 61.557 60.000 17.16 0.00 0.00 2.77
573 577 1.593209 GCACGTCGACACTCCCAAA 60.593 57.895 17.16 0.00 0.00 3.28
574 578 2.028484 GCACGTCGACACTCCCAA 59.972 61.111 17.16 0.00 0.00 4.12
575 579 3.220658 TGCACGTCGACACTCCCA 61.221 61.111 17.16 1.92 0.00 4.37
576 580 2.733593 GTGCACGTCGACACTCCC 60.734 66.667 17.16 0.00 33.92 4.30
577 581 3.097728 CGTGCACGTCGACACTCC 61.098 66.667 30.50 0.97 34.58 3.85
587 591 3.455195 CGTGGTCGTACGTGCACG 61.455 66.667 35.99 35.99 46.33 5.34
654 658 3.377573 TCTTATAAACTGGGCGGGTAGT 58.622 45.455 0.00 0.00 0.00 2.73
666 671 1.330829 GCACCGCTGGCTCTTATAAAC 59.669 52.381 0.00 0.00 0.00 2.01
705 710 0.035458 GGCGTGCTGCTATCCCTATT 59.965 55.000 0.00 0.00 45.43 1.73
707 712 1.748329 CTGGCGTGCTGCTATCCCTA 61.748 60.000 0.00 0.00 45.43 3.53
709 714 2.590007 CTGGCGTGCTGCTATCCC 60.590 66.667 0.00 0.00 45.43 3.85
711 716 3.275338 GGCTGGCGTGCTGCTATC 61.275 66.667 0.00 0.00 45.43 2.08
746 773 1.271102 AGTGAAGTGAAGAGGACGAGC 59.729 52.381 0.00 0.00 0.00 5.03
825 852 1.895798 AGCCTAGCTAGCGATGCATTA 59.104 47.619 22.83 3.11 36.99 1.90
900 927 5.753438 TGACGAGGCAATCATAACTCATAAC 59.247 40.000 0.00 0.00 0.00 1.89
1026 1058 2.112522 GATGCGACTAGTGTGACGATG 58.887 52.381 0.00 0.00 0.00 3.84
1027 1059 1.743394 TGATGCGACTAGTGTGACGAT 59.257 47.619 0.00 0.00 0.00 3.73
1028 1060 1.130561 CTGATGCGACTAGTGTGACGA 59.869 52.381 0.00 0.00 0.00 4.20
1029 1061 1.539341 CTGATGCGACTAGTGTGACG 58.461 55.000 0.00 0.00 0.00 4.35
1049 1081 0.519077 CGGAAGGAAAGCAGCACTTC 59.481 55.000 0.00 3.02 37.75 3.01
1052 1084 1.869690 GTCGGAAGGAAAGCAGCAC 59.130 57.895 0.00 0.00 0.00 4.40
1095 1127 4.020617 TGCGTCTTCAGCAGGGGG 62.021 66.667 0.00 0.00 40.01 5.40
1203 1235 0.095935 CGCCGTTGAAGCTCTTGATG 59.904 55.000 0.00 0.00 0.00 3.07
1309 1344 0.815615 GAGTTGGTGATCGGGATGGC 60.816 60.000 0.00 0.00 0.00 4.40
1311 1346 0.530650 CGGAGTTGGTGATCGGGATG 60.531 60.000 0.00 0.00 0.00 3.51
1824 1859 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1828 1863 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1829 1864 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1832 1867 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1833 1868 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1834 1869 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1835 1870 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1836 1871 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1837 1872 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1838 1873 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1839 1874 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1840 1875 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1841 1876 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1842 1877 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1843 1878 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1844 1879 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1845 1880 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1846 1881 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1848 1883 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2365 2402 6.773638 AGCCTTTAATGTCGATGGATTCTAT 58.226 36.000 0.00 0.00 0.00 1.98
2508 2557 0.320683 TGAACAGGATGACGTGGCAG 60.321 55.000 0.00 0.00 39.69 4.85
2562 2613 2.062971 TACTAGTCGGTGGCTTAGGG 57.937 55.000 0.00 0.00 0.00 3.53
2573 2624 7.687005 TTTTTGGTTGCAAAAATACTAGTCG 57.313 32.000 0.00 0.00 38.60 4.18
2651 2705 8.492415 AGCTAGAAATGGAGTATGGTTGTATA 57.508 34.615 0.00 0.00 0.00 1.47
2691 2745 7.640597 TTTCTTCAGATGAGAATTCATGCAT 57.359 32.000 8.44 8.08 44.01 3.96
2809 2864 0.812811 CGACGACGTATCCCTCCTCA 60.813 60.000 0.00 0.00 34.56 3.86
2830 2885 0.660595 CCGGATAGCACGTCGACATC 60.661 60.000 17.16 10.13 0.00 3.06
2872 2927 2.048127 GTCAGCACCTCACCGTCC 60.048 66.667 0.00 0.00 0.00 4.79
2878 2933 0.837691 AGACCATGGTCAGCACCTCA 60.838 55.000 39.38 0.00 46.76 3.86
3130 3205 2.833794 GCACCCTGCAATAGTATTCGA 58.166 47.619 0.00 0.00 44.26 3.71
3463 3568 7.012421 ACGAAAAGAAAAGCAGAAAGTGTAGAT 59.988 33.333 0.00 0.00 0.00 1.98
3477 3582 3.436700 ACAAGGCCACGAAAAGAAAAG 57.563 42.857 5.01 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.