Multiple sequence alignment - TraesCS5A01G421600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G421600 chr5A 100.000 4739 0 0 1 4739 607684318 607679580 0.000000e+00 8752.0
1 TraesCS5A01G421600 chr5D 95.005 2823 114 9 221 3019 487291472 487288653 0.000000e+00 4407.0
2 TraesCS5A01G421600 chr5D 91.882 1047 53 17 3005 4025 487288627 487287587 0.000000e+00 1434.0
3 TraesCS5A01G421600 chr5D 81.757 444 46 14 4032 4469 487287539 487287125 5.870000e-89 339.0
4 TraesCS5A01G421600 chr5D 88.889 270 27 1 4470 4739 487287081 487286815 3.540000e-86 329.0
5 TraesCS5A01G421600 chr5D 97.727 44 0 1 59 102 495168995 495169037 1.830000e-09 75.0
6 TraesCS5A01G421600 chr5B 94.761 2825 113 13 221 3019 599656111 599653296 0.000000e+00 4364.0
7 TraesCS5A01G421600 chr5B 87.705 1464 99 33 3005 4420 599653272 599651842 0.000000e+00 1631.0
8 TraesCS5A01G421600 chr5B 85.240 271 27 7 4475 4739 599651755 599651492 2.810000e-67 267.0
9 TraesCS5A01G421600 chr5B 97.727 44 0 1 63 106 589125931 589125973 1.830000e-09 75.0
10 TraesCS5A01G421600 chr2A 95.946 74 2 1 124 197 28827452 28827380 8.330000e-23 119.0
11 TraesCS5A01G421600 chr2A 100.000 43 0 0 63 105 352429282 352429324 3.930000e-11 80.5
12 TraesCS5A01G421600 chr3B 94.667 75 3 1 124 197 157239142 157239216 1.080000e-21 115.0
13 TraesCS5A01G421600 chr3B 95.714 70 3 0 124 193 479903673 479903604 3.880000e-21 113.0
14 TraesCS5A01G421600 chr3B 85.507 69 7 3 60 127 749643850 749643916 8.510000e-08 69.4
15 TraesCS5A01G421600 chr3B 85.507 69 7 3 60 127 818878538 818878472 8.510000e-08 69.4
16 TraesCS5A01G421600 chr3A 94.667 75 2 2 124 198 259336993 259337065 1.080000e-21 115.0
17 TraesCS5A01G421600 chr7B 90.110 91 4 5 124 213 51618714 51618628 3.880000e-21 113.0
18 TraesCS5A01G421600 chr7B 95.714 70 3 0 124 193 410845862 410845793 3.880000e-21 113.0
19 TraesCS5A01G421600 chr6B 100.000 61 0 0 124 184 187832427 187832487 3.880000e-21 113.0
20 TraesCS5A01G421600 chr1B 94.667 75 1 3 124 198 266928818 266928747 3.880000e-21 113.0
21 TraesCS5A01G421600 chr1B 94.595 74 2 2 124 196 306070344 306070272 3.880000e-21 113.0
22 TraesCS5A01G421600 chr2B 81.818 121 18 4 227 345 489351910 489352028 1.090000e-16 99.0
23 TraesCS5A01G421600 chr2B 100.000 43 0 0 63 105 273740410 273740368 3.930000e-11 80.5
24 TraesCS5A01G421600 chr7A 90.909 55 2 3 60 113 539445252 539445304 2.370000e-08 71.3
25 TraesCS5A01G421600 chr6D 85.294 68 7 3 61 127 81053850 81053785 3.060000e-07 67.6
26 TraesCS5A01G421600 chr1D 85.294 68 7 3 61 127 356316458 356316523 3.060000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G421600 chr5A 607679580 607684318 4738 True 8752.000000 8752 100.000000 1 4739 1 chr5A.!!$R1 4738
1 TraesCS5A01G421600 chr5D 487286815 487291472 4657 True 1627.250000 4407 89.383250 221 4739 4 chr5D.!!$R1 4518
2 TraesCS5A01G421600 chr5B 599651492 599656111 4619 True 2087.333333 4364 89.235333 221 4739 3 chr5B.!!$R1 4518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.0 0.00 1.40 F
131 132 0.039527 GCCATTGTTGTTGGTCGGAC 60.040 55.000 0.00 0.0 36.57 4.79 F
859 891 0.169672 GCAGCGTCTAGGTTACGACA 59.830 55.000 6.64 0.0 42.90 4.35 F
1680 1712 1.695242 TGTGGGGTATGTGAACGTCTT 59.305 47.619 0.00 0.0 0.00 3.01 F
2188 2221 0.530744 CGGACCAAAGACGATCTCCA 59.469 55.000 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 1659 1.494721 TGCAGTTCTCACTTTCCCCTT 59.505 47.619 0.0 0.0 0.00 3.95 R
2086 2119 1.893801 CCGGCCTAAGTACCCTATCAG 59.106 57.143 0.0 0.0 0.00 2.90 R
2147 2180 3.281727 TGCCATCCCTTGTAGTGAATC 57.718 47.619 0.0 0.0 0.00 2.52 R
3107 3183 1.134401 ACTGATATTGGCACACGGGAG 60.134 52.381 0.0 0.0 39.29 4.30 R
3813 3912 1.197036 TCAGTTCTCTACGTGCAGTCG 59.803 52.381 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.657013 AGATCTTGTTTTTCACTCCCTCC 58.343 43.478 0.00 0.00 0.00 4.30
23 24 2.846193 TCTTGTTTTTCACTCCCTCCG 58.154 47.619 0.00 0.00 0.00 4.63
24 25 2.171870 TCTTGTTTTTCACTCCCTCCGT 59.828 45.455 0.00 0.00 0.00 4.69
25 26 2.249844 TGTTTTTCACTCCCTCCGTC 57.750 50.000 0.00 0.00 0.00 4.79
26 27 1.202722 TGTTTTTCACTCCCTCCGTCC 60.203 52.381 0.00 0.00 0.00 4.79
27 28 0.399075 TTTTTCACTCCCTCCGTCCC 59.601 55.000 0.00 0.00 0.00 4.46
28 29 1.823169 TTTTCACTCCCTCCGTCCCG 61.823 60.000 0.00 0.00 0.00 5.14
29 30 2.718487 TTTCACTCCCTCCGTCCCGA 62.718 60.000 0.00 0.00 0.00 5.14
30 31 2.678934 CACTCCCTCCGTCCCGAA 60.679 66.667 0.00 0.00 0.00 4.30
31 32 2.058595 CACTCCCTCCGTCCCGAAT 61.059 63.158 0.00 0.00 0.00 3.34
32 33 1.305887 ACTCCCTCCGTCCCGAATT 60.306 57.895 0.00 0.00 0.00 2.17
33 34 0.032813 ACTCCCTCCGTCCCGAATTA 60.033 55.000 0.00 0.00 0.00 1.40
34 35 0.388294 CTCCCTCCGTCCCGAATTAC 59.612 60.000 0.00 0.00 0.00 1.89
35 36 0.032813 TCCCTCCGTCCCGAATTACT 60.033 55.000 0.00 0.00 0.00 2.24
36 37 0.828677 CCCTCCGTCCCGAATTACTT 59.171 55.000 0.00 0.00 0.00 2.24
37 38 1.208776 CCCTCCGTCCCGAATTACTTT 59.791 52.381 0.00 0.00 0.00 2.66
38 39 2.355412 CCCTCCGTCCCGAATTACTTTT 60.355 50.000 0.00 0.00 0.00 2.27
39 40 2.934553 CCTCCGTCCCGAATTACTTTTC 59.065 50.000 0.00 0.00 0.00 2.29
40 41 3.369157 CCTCCGTCCCGAATTACTTTTCT 60.369 47.826 0.00 0.00 0.00 2.52
41 42 4.251268 CTCCGTCCCGAATTACTTTTCTT 58.749 43.478 0.00 0.00 0.00 2.52
42 43 5.404466 TCCGTCCCGAATTACTTTTCTTA 57.596 39.130 0.00 0.00 0.00 2.10
43 44 5.413499 TCCGTCCCGAATTACTTTTCTTAG 58.587 41.667 0.00 0.00 0.00 2.18
44 45 5.185635 TCCGTCCCGAATTACTTTTCTTAGA 59.814 40.000 0.00 0.00 0.00 2.10
45 46 6.047231 CCGTCCCGAATTACTTTTCTTAGAT 58.953 40.000 0.00 0.00 0.00 1.98
46 47 6.537660 CCGTCCCGAATTACTTTTCTTAGATT 59.462 38.462 0.00 0.00 0.00 2.40
47 48 7.065443 CCGTCCCGAATTACTTTTCTTAGATTT 59.935 37.037 0.00 0.00 0.00 2.17
48 49 7.903431 CGTCCCGAATTACTTTTCTTAGATTTG 59.097 37.037 0.00 0.00 0.00 2.32
49 50 8.182227 GTCCCGAATTACTTTTCTTAGATTTGG 58.818 37.037 0.00 0.00 0.00 3.28
50 51 7.338449 TCCCGAATTACTTTTCTTAGATTTGGG 59.662 37.037 11.38 11.38 44.38 4.12
51 52 7.338449 CCCGAATTACTTTTCTTAGATTTGGGA 59.662 37.037 12.00 0.00 45.22 4.37
52 53 8.182227 CCGAATTACTTTTCTTAGATTTGGGAC 58.818 37.037 0.00 0.00 0.00 4.46
53 54 7.903431 CGAATTACTTTTCTTAGATTTGGGACG 59.097 37.037 0.00 0.00 0.00 4.79
54 55 7.625828 ATTACTTTTCTTAGATTTGGGACGG 57.374 36.000 0.00 0.00 0.00 4.79
55 56 5.237236 ACTTTTCTTAGATTTGGGACGGA 57.763 39.130 0.00 0.00 0.00 4.69
56 57 5.246307 ACTTTTCTTAGATTTGGGACGGAG 58.754 41.667 0.00 0.00 0.00 4.63
57 58 3.906720 TTCTTAGATTTGGGACGGAGG 57.093 47.619 0.00 0.00 0.00 4.30
58 59 2.829023 TCTTAGATTTGGGACGGAGGT 58.171 47.619 0.00 0.00 0.00 3.85
59 60 3.985127 TCTTAGATTTGGGACGGAGGTA 58.015 45.455 0.00 0.00 0.00 3.08
60 61 4.355549 TCTTAGATTTGGGACGGAGGTAA 58.644 43.478 0.00 0.00 0.00 2.85
61 62 4.966805 TCTTAGATTTGGGACGGAGGTAAT 59.033 41.667 0.00 0.00 0.00 1.89
62 63 6.138263 TCTTAGATTTGGGACGGAGGTAATA 58.862 40.000 0.00 0.00 0.00 0.98
63 64 4.684484 AGATTTGGGACGGAGGTAATAC 57.316 45.455 0.00 0.00 0.00 1.89
64 65 4.035112 AGATTTGGGACGGAGGTAATACA 58.965 43.478 0.00 0.00 0.00 2.29
65 66 4.472108 AGATTTGGGACGGAGGTAATACAA 59.528 41.667 0.00 0.00 0.00 2.41
66 67 4.637387 TTTGGGACGGAGGTAATACAAA 57.363 40.909 0.00 0.00 0.00 2.83
67 68 4.847990 TTGGGACGGAGGTAATACAAAT 57.152 40.909 0.00 0.00 0.00 2.32
68 69 4.411256 TGGGACGGAGGTAATACAAATC 57.589 45.455 0.00 0.00 0.00 2.17
69 70 4.035112 TGGGACGGAGGTAATACAAATCT 58.965 43.478 0.00 0.00 0.00 2.40
70 71 5.210430 TGGGACGGAGGTAATACAAATCTA 58.790 41.667 0.00 0.00 0.00 1.98
71 72 5.662208 TGGGACGGAGGTAATACAAATCTAA 59.338 40.000 0.00 0.00 0.00 2.10
72 73 6.183360 TGGGACGGAGGTAATACAAATCTAAG 60.183 42.308 0.00 0.00 0.00 2.18
73 74 6.041296 GGGACGGAGGTAATACAAATCTAAGA 59.959 42.308 0.00 0.00 0.00 2.10
74 75 6.922407 GGACGGAGGTAATACAAATCTAAGAC 59.078 42.308 0.00 0.00 0.00 3.01
75 76 7.414222 ACGGAGGTAATACAAATCTAAGACA 57.586 36.000 0.00 0.00 0.00 3.41
76 77 7.844009 ACGGAGGTAATACAAATCTAAGACAA 58.156 34.615 0.00 0.00 0.00 3.18
77 78 7.980099 ACGGAGGTAATACAAATCTAAGACAAG 59.020 37.037 0.00 0.00 0.00 3.16
78 79 7.980099 CGGAGGTAATACAAATCTAAGACAAGT 59.020 37.037 0.00 0.00 0.00 3.16
87 88 8.934023 ACAAATCTAAGACAAGTAATTTGGGA 57.066 30.769 9.60 0.00 41.25 4.37
88 89 8.793592 ACAAATCTAAGACAAGTAATTTGGGAC 58.206 33.333 9.60 0.00 41.25 4.46
89 90 7.611213 AATCTAAGACAAGTAATTTGGGACG 57.389 36.000 0.00 0.00 41.25 4.79
90 91 5.484715 TCTAAGACAAGTAATTTGGGACGG 58.515 41.667 0.00 0.00 41.25 4.79
91 92 4.360951 AAGACAAGTAATTTGGGACGGA 57.639 40.909 0.00 0.00 41.25 4.69
92 93 3.939066 AGACAAGTAATTTGGGACGGAG 58.061 45.455 0.00 0.00 41.25 4.63
93 94 3.007635 GACAAGTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 41.25 4.30
94 95 2.374170 ACAAGTAATTTGGGACGGAGGT 59.626 45.455 0.00 0.00 41.25 3.85
95 96 3.583966 ACAAGTAATTTGGGACGGAGGTA 59.416 43.478 0.00 0.00 41.25 3.08
96 97 4.041938 ACAAGTAATTTGGGACGGAGGTAA 59.958 41.667 0.00 0.00 41.25 2.85
97 98 5.190677 CAAGTAATTTGGGACGGAGGTAAT 58.809 41.667 0.00 0.00 32.95 1.89
98 99 6.070078 ACAAGTAATTTGGGACGGAGGTAATA 60.070 38.462 0.00 0.00 41.25 0.98
99 100 5.922053 AGTAATTTGGGACGGAGGTAATAC 58.078 41.667 0.00 0.00 0.00 1.89
100 101 4.847990 AATTTGGGACGGAGGTAATACA 57.152 40.909 0.00 0.00 0.00 2.29
101 102 5.382664 AATTTGGGACGGAGGTAATACAT 57.617 39.130 0.00 0.00 0.00 2.29
102 103 4.847990 TTTGGGACGGAGGTAATACATT 57.152 40.909 0.00 0.00 0.00 2.71
103 104 4.847990 TTGGGACGGAGGTAATACATTT 57.152 40.909 0.00 0.00 0.00 2.32
104 105 4.847990 TGGGACGGAGGTAATACATTTT 57.152 40.909 0.00 0.00 0.00 1.82
105 106 5.954153 TGGGACGGAGGTAATACATTTTA 57.046 39.130 0.00 0.00 0.00 1.52
106 107 6.503560 TGGGACGGAGGTAATACATTTTAT 57.496 37.500 0.00 0.00 0.00 1.40
107 108 6.292923 TGGGACGGAGGTAATACATTTTATG 58.707 40.000 0.00 0.00 0.00 1.90
108 109 5.180680 GGGACGGAGGTAATACATTTTATGC 59.819 44.000 0.00 0.00 0.00 3.14
109 110 5.761234 GGACGGAGGTAATACATTTTATGCA 59.239 40.000 0.00 0.00 0.00 3.96
110 111 6.261381 GGACGGAGGTAATACATTTTATGCAA 59.739 38.462 0.00 0.00 0.00 4.08
111 112 7.201750 GGACGGAGGTAATACATTTTATGCAAA 60.202 37.037 0.00 0.00 0.00 3.68
112 113 7.703328 ACGGAGGTAATACATTTTATGCAAAG 58.297 34.615 0.00 0.00 0.00 2.77
113 114 6.636850 CGGAGGTAATACATTTTATGCAAAGC 59.363 38.462 0.00 0.00 0.00 3.51
114 115 6.923508 GGAGGTAATACATTTTATGCAAAGCC 59.076 38.462 0.00 0.00 0.00 4.35
115 116 7.416964 AGGTAATACATTTTATGCAAAGCCA 57.583 32.000 0.00 0.00 0.00 4.75
116 117 8.021898 AGGTAATACATTTTATGCAAAGCCAT 57.978 30.769 0.00 0.00 0.00 4.40
117 118 8.485392 AGGTAATACATTTTATGCAAAGCCATT 58.515 29.630 0.00 0.00 0.00 3.16
118 119 8.550376 GGTAATACATTTTATGCAAAGCCATTG 58.450 33.333 0.00 0.00 42.21 2.82
119 120 9.097257 GTAATACATTTTATGCAAAGCCATTGT 57.903 29.630 0.00 0.00 41.32 2.71
120 121 8.564509 AATACATTTTATGCAAAGCCATTGTT 57.435 26.923 0.00 0.00 41.32 2.83
121 122 6.243811 ACATTTTATGCAAAGCCATTGTTG 57.756 33.333 0.00 0.00 41.32 3.33
122 123 5.764192 ACATTTTATGCAAAGCCATTGTTGT 59.236 32.000 0.00 0.00 41.32 3.32
123 124 6.262720 ACATTTTATGCAAAGCCATTGTTGTT 59.737 30.769 0.00 0.00 41.32 2.83
124 125 5.670149 TTTATGCAAAGCCATTGTTGTTG 57.330 34.783 0.00 0.00 41.32 3.33
125 126 1.950828 TGCAAAGCCATTGTTGTTGG 58.049 45.000 2.24 0.00 41.32 3.77
126 127 1.209019 TGCAAAGCCATTGTTGTTGGT 59.791 42.857 2.24 0.00 41.32 3.67
127 128 1.866601 GCAAAGCCATTGTTGTTGGTC 59.133 47.619 2.24 0.00 41.32 4.02
128 129 2.126467 CAAAGCCATTGTTGTTGGTCG 58.874 47.619 0.00 0.00 36.57 4.79
129 130 0.673437 AAGCCATTGTTGTTGGTCGG 59.327 50.000 0.00 0.00 36.57 4.79
130 131 0.179004 AGCCATTGTTGTTGGTCGGA 60.179 50.000 0.00 0.00 36.57 4.55
131 132 0.039527 GCCATTGTTGTTGGTCGGAC 60.040 55.000 0.00 0.00 36.57 4.79
132 133 0.596082 CCATTGTTGTTGGTCGGACC 59.404 55.000 20.36 20.36 39.22 4.46
133 134 0.596082 CATTGTTGTTGGTCGGACCC 59.404 55.000 23.81 10.36 37.50 4.46
134 135 0.476771 ATTGTTGTTGGTCGGACCCT 59.523 50.000 23.81 0.00 37.50 4.34
135 136 0.256464 TTGTTGTTGGTCGGACCCTT 59.744 50.000 23.81 0.00 37.50 3.95
136 137 0.179040 TGTTGTTGGTCGGACCCTTC 60.179 55.000 23.81 14.02 37.50 3.46
137 138 0.887836 GTTGTTGGTCGGACCCTTCC 60.888 60.000 23.81 9.64 37.50 3.46
138 139 2.059345 TTGTTGGTCGGACCCTTCCC 62.059 60.000 23.81 7.98 38.99 3.97
139 140 2.931649 TTGGTCGGACCCTTCCCC 60.932 66.667 23.81 0.00 38.99 4.81
140 141 3.795977 TTGGTCGGACCCTTCCCCA 62.796 63.158 23.81 0.69 38.99 4.96
141 142 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
142 143 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
143 144 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
144 145 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
145 146 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
146 147 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
147 148 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
148 149 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
149 150 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
150 151 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
171 172 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
172 173 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
173 174 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
174 175 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
175 176 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
176 177 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
177 178 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
178 179 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
179 180 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
200 201 3.988819 CCCCCATTGTTGTTGTTTACAG 58.011 45.455 0.00 0.00 38.19 2.74
201 202 3.386402 CCCCCATTGTTGTTGTTTACAGT 59.614 43.478 0.00 0.00 38.19 3.55
202 203 4.141824 CCCCCATTGTTGTTGTTTACAGTT 60.142 41.667 0.00 0.00 38.19 3.16
203 204 5.423886 CCCCATTGTTGTTGTTTACAGTTT 58.576 37.500 0.00 0.00 38.19 2.66
204 205 6.407074 CCCCCATTGTTGTTGTTTACAGTTTA 60.407 38.462 0.00 0.00 38.19 2.01
205 206 7.213678 CCCCATTGTTGTTGTTTACAGTTTAT 58.786 34.615 0.00 0.00 38.19 1.40
206 207 7.170658 CCCCATTGTTGTTGTTTACAGTTTATG 59.829 37.037 0.00 0.00 38.19 1.90
207 208 7.307101 CCCATTGTTGTTGTTTACAGTTTATGC 60.307 37.037 0.00 0.00 38.19 3.14
208 209 7.223582 CCATTGTTGTTGTTTACAGTTTATGCA 59.776 33.333 0.00 0.00 38.19 3.96
209 210 8.598924 CATTGTTGTTGTTTACAGTTTATGCAA 58.401 29.630 0.00 0.00 38.19 4.08
210 211 8.534333 TTGTTGTTGTTTACAGTTTATGCAAA 57.466 26.923 0.00 0.00 38.19 3.68
211 212 8.179148 TGTTGTTGTTTACAGTTTATGCAAAG 57.821 30.769 0.00 0.00 38.19 2.77
212 213 7.276658 TGTTGTTGTTTACAGTTTATGCAAAGG 59.723 33.333 0.00 0.00 38.19 3.11
213 214 5.751028 TGTTGTTTACAGTTTATGCAAAGGC 59.249 36.000 0.00 0.00 34.62 4.35
214 215 6.628175 TGTTGTTTACAGTTTATGCAAAGGCA 60.628 34.615 0.00 0.00 42.64 4.75
215 216 7.900094 TGTTGTTTACAGTTTATGCAAAGGCAT 60.900 33.333 7.39 7.39 46.24 4.40
228 229 5.281693 GCAAAGGCATTGTTAAAATGTCC 57.718 39.130 4.23 0.00 41.32 4.02
229 230 4.754114 GCAAAGGCATTGTTAAAATGTCCA 59.246 37.500 4.23 0.00 41.32 4.02
230 231 5.412286 GCAAAGGCATTGTTAAAATGTCCAT 59.588 36.000 4.23 0.00 41.32 3.41
231 232 6.072563 GCAAAGGCATTGTTAAAATGTCCATT 60.073 34.615 4.23 3.56 41.32 3.16
232 233 7.521910 GCAAAGGCATTGTTAAAATGTCCATTT 60.522 33.333 4.23 0.00 40.58 2.32
233 234 7.437793 AAGGCATTGTTAAAATGTCCATTTG 57.562 32.000 6.05 0.00 40.57 2.32
234 235 6.767456 AGGCATTGTTAAAATGTCCATTTGA 58.233 32.000 6.05 0.00 40.57 2.69
235 236 6.650390 AGGCATTGTTAAAATGTCCATTTGAC 59.350 34.615 6.05 8.63 44.72 3.18
269 270 2.872245 CACTCAATTCGTGTGTGGTCTT 59.128 45.455 1.56 0.00 44.46 3.01
274 275 6.535150 ACTCAATTCGTGTGTGGTCTTATATG 59.465 38.462 0.00 0.00 32.74 1.78
276 277 6.312672 TCAATTCGTGTGTGGTCTTATATGTG 59.687 38.462 0.00 0.00 0.00 3.21
293 294 4.870123 ATGTGCAAGCTTTTGTAATGGA 57.130 36.364 0.00 0.00 0.00 3.41
294 295 3.976169 TGTGCAAGCTTTTGTAATGGAC 58.024 40.909 0.00 0.00 33.59 4.02
335 336 7.034967 TGGGGAAACTGTATTTTGGTATAGT 57.965 36.000 0.00 0.00 0.00 2.12
388 389 0.178961 AACAAAGGGGAACAGAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
394 395 0.919710 GGGGAACAGAGGGCACTTAT 59.080 55.000 0.00 0.00 0.00 1.73
397 398 3.433740 GGGGAACAGAGGGCACTTATTAG 60.434 52.174 0.00 0.00 0.00 1.73
399 400 4.407945 GGGAACAGAGGGCACTTATTAGTA 59.592 45.833 0.00 0.00 31.96 1.82
405 406 5.291128 CAGAGGGCACTTATTAGTAACAACG 59.709 44.000 0.00 0.00 31.96 4.10
406 407 5.186409 AGAGGGCACTTATTAGTAACAACGA 59.814 40.000 0.00 0.00 31.96 3.85
433 434 7.145323 TCAGAATTTGAAAATTTCCGAGTTCC 58.855 34.615 3.00 0.00 38.64 3.62
465 466 1.872952 GCCTGCCCAACAATTTGTTTC 59.127 47.619 12.02 5.70 38.77 2.78
467 468 3.132925 CCTGCCCAACAATTTGTTTCTG 58.867 45.455 12.02 2.66 38.77 3.02
468 469 2.545106 CTGCCCAACAATTTGTTTCTGC 59.455 45.455 12.02 14.07 38.77 4.26
470 471 2.493035 CCCAACAATTTGTTTCTGCCC 58.507 47.619 12.02 0.00 38.77 5.36
482 483 5.404466 TGTTTCTGCCCATCTTATTTTGG 57.596 39.130 0.00 0.00 0.00 3.28
512 513 0.316522 ATCGGATGCATCGACTCCTG 59.683 55.000 20.15 1.96 39.55 3.86
586 605 9.937175 GGTTGCTGAACTTATGTTATAATCTTC 57.063 33.333 0.00 0.00 36.39 2.87
639 671 4.573201 TGTTAGCCAGTCGGTAAAATATGC 59.427 41.667 0.00 0.00 36.24 3.14
664 696 1.229145 TGGTTGGGCCAAATGGGAG 60.229 57.895 22.82 0.00 45.94 4.30
665 697 1.989508 GGTTGGGCCAAATGGGAGG 60.990 63.158 22.82 0.00 40.01 4.30
666 698 1.229177 GTTGGGCCAAATGGGAGGT 60.229 57.895 22.82 0.00 40.01 3.85
681 713 4.631234 TGGGAGGTACCATAATCAACTCT 58.369 43.478 15.94 0.00 41.20 3.24
696 728 5.023533 TCAACTCTAGTGCAAAAGACAGT 57.976 39.130 0.00 0.00 0.00 3.55
700 732 5.186198 ACTCTAGTGCAAAAGACAGTTTGT 58.814 37.500 0.00 0.00 40.06 2.83
701 733 6.346096 ACTCTAGTGCAAAAGACAGTTTGTA 58.654 36.000 0.00 0.00 40.06 2.41
711 743 3.886123 AGACAGTTTGTACTTTGGCAGT 58.114 40.909 0.00 0.00 39.87 4.40
735 767 5.603596 TCATTTGCTAAATGCCATGATTCC 58.396 37.500 13.50 0.00 46.09 3.01
773 805 4.938226 GGCTGCTACACTGAGAAGTTATTT 59.062 41.667 0.00 0.00 0.00 1.40
859 891 0.169672 GCAGCGTCTAGGTTACGACA 59.830 55.000 6.64 0.00 42.90 4.35
932 964 6.629128 TCGTGTGGAAATTTATTGATGCATT 58.371 32.000 0.00 0.00 0.00 3.56
933 965 6.530887 TCGTGTGGAAATTTATTGATGCATTG 59.469 34.615 0.00 0.00 0.00 2.82
951 983 8.915871 ATGCATTGATTGTAATGTGTAAGTTC 57.084 30.769 0.00 0.00 39.62 3.01
991 1023 4.523943 TGCAACTTGCTGGATTCATTTAGT 59.476 37.500 14.78 0.00 45.31 2.24
995 1027 7.598493 GCAACTTGCTGGATTCATTTAGTTTAA 59.402 33.333 6.50 0.00 40.96 1.52
1238 1270 2.968574 ACCATAGTGCATCGGATCTTCT 59.031 45.455 0.00 0.00 0.00 2.85
1263 1295 4.113354 ACGACACTTTCAGTTCTCAAGTC 58.887 43.478 0.00 0.00 0.00 3.01
1287 1319 2.241160 ACTTTTGAGCCATGTGATGCA 58.759 42.857 0.00 0.00 0.00 3.96
1599 1631 5.897250 TCAGGGTGCAGACAAGTATATAGAA 59.103 40.000 0.00 0.00 0.00 2.10
1627 1659 5.186256 TGCTTCTGTTATCCCAATTACCA 57.814 39.130 0.00 0.00 0.00 3.25
1675 1707 2.159382 CTGGTTGTGGGGTATGTGAAC 58.841 52.381 0.00 0.00 0.00 3.18
1680 1712 1.695242 TGTGGGGTATGTGAACGTCTT 59.305 47.619 0.00 0.00 0.00 3.01
1682 1714 3.056393 TGTGGGGTATGTGAACGTCTTAG 60.056 47.826 0.00 0.00 0.00 2.18
1683 1715 2.093869 TGGGGTATGTGAACGTCTTAGC 60.094 50.000 0.00 0.00 0.00 3.09
1918 1950 4.263639 TGTCCTTGGATCAATGAAGCTCTT 60.264 41.667 0.00 0.00 0.00 2.85
2086 2119 3.728845 ACGGTATGTACATGATGGAAGC 58.271 45.455 18.81 5.94 0.00 3.86
2188 2221 0.530744 CGGACCAAAGACGATCTCCA 59.469 55.000 0.00 0.00 0.00 3.86
2278 2311 7.550906 GGATGGTATTGCTATATGGAGAAAGAC 59.449 40.741 0.00 0.00 0.00 3.01
2287 2320 9.288576 TGCTATATGGAGAAAGACATTAAATGG 57.711 33.333 0.00 0.00 33.60 3.16
2422 2455 9.724839 GAGTGAATCTTATCTGTACTGTTCTAC 57.275 37.037 0.00 0.00 0.00 2.59
2429 2462 9.524496 TCTTATCTGTACTGTTCTACCTTTGTA 57.476 33.333 0.00 0.00 0.00 2.41
2833 2866 2.894126 AGGTGTAATCTATGAGCGAGGG 59.106 50.000 0.00 0.00 0.00 4.30
2903 2936 7.110155 TCTCCTGGTTTCATACTTTGGTTATC 58.890 38.462 0.00 0.00 0.00 1.75
2956 2989 8.293867 TGTACATTGTTTCTACATTTTGGTAGC 58.706 33.333 0.00 0.00 40.42 3.58
2958 2991 7.951591 ACATTGTTTCTACATTTTGGTAGCTT 58.048 30.769 0.00 0.00 40.42 3.74
2961 2994 7.341445 TGTTTCTACATTTTGGTAGCTTTGT 57.659 32.000 0.00 0.00 40.42 2.83
2990 3023 5.109210 GCAACAGACCTTTTTACTTTTGCT 58.891 37.500 0.00 0.00 41.23 3.91
2998 3031 5.046950 ACCTTTTTACTTTTGCTGGTTCACA 60.047 36.000 0.00 0.00 0.00 3.58
3098 3174 5.724328 TGTGTGTGAAGATAGAAGGATGTC 58.276 41.667 0.00 0.00 0.00 3.06
3191 3274 4.405358 TGGGAAACTCTTCAATTTGTGCTT 59.595 37.500 0.00 0.00 32.75 3.91
3208 3291 6.709145 TGTGCTTTTGTTAAATGATGATGC 57.291 33.333 0.00 0.00 0.00 3.91
3209 3292 6.221659 TGTGCTTTTGTTAAATGATGATGCA 58.778 32.000 0.00 0.00 0.00 3.96
3240 3323 8.090831 TGCCATGTATTTGTTATTGTGCTTTTA 58.909 29.630 0.00 0.00 0.00 1.52
3313 3399 8.723942 TTTTGATATAGTTCCTGAGAAGCTTC 57.276 34.615 19.11 19.11 30.91 3.86
3314 3400 6.412362 TGATATAGTTCCTGAGAAGCTTCC 57.588 41.667 22.81 14.41 30.91 3.46
3318 3406 4.445557 AGTTCCTGAGAAGCTTCCTTTT 57.554 40.909 22.81 4.04 30.91 2.27
3320 3408 5.941788 AGTTCCTGAGAAGCTTCCTTTTTA 58.058 37.500 22.81 2.46 30.91 1.52
3322 3410 7.007116 AGTTCCTGAGAAGCTTCCTTTTTATT 58.993 34.615 22.81 1.20 30.91 1.40
3460 3548 3.057033 AGCATTGAAAGACCAAGATGTGC 60.057 43.478 0.00 0.00 31.86 4.57
3462 3550 4.560108 GCATTGAAAGACCAAGATGTGCTT 60.560 41.667 0.00 0.00 37.29 3.91
3470 3558 6.059787 AGACCAAGATGTGCTTCTAAATCT 57.940 37.500 0.00 0.00 33.60 2.40
3476 3564 7.010923 CCAAGATGTGCTTCTAAATCTGTAGAC 59.989 40.741 0.00 0.00 33.60 2.59
3493 3581 5.185454 TGTAGACCTTGTTGGCTGATATTG 58.815 41.667 0.00 0.00 40.22 1.90
3754 3852 4.275936 GCCGCTAACATGTCTGGATTATTT 59.724 41.667 0.00 0.00 0.00 1.40
3761 3859 7.687941 AACATGTCTGGATTATTTTTCTCGT 57.312 32.000 0.00 0.00 0.00 4.18
3765 3863 7.737972 TGTCTGGATTATTTTTCTCGTTTCA 57.262 32.000 0.00 0.00 0.00 2.69
3781 3880 7.663827 TCTCGTTTCACTTCAGGATAACTTTA 58.336 34.615 0.00 0.00 0.00 1.85
3796 3895 0.179067 CTTTATCCCCGGCAGCGTTA 60.179 55.000 0.00 0.00 0.00 3.18
3813 3912 4.084013 AGCGTTAGTTGCAAGTACACATTC 60.084 41.667 13.61 7.54 33.85 2.67
3817 3916 3.728845 AGTTGCAAGTACACATTCGACT 58.271 40.909 4.57 0.00 0.00 4.18
3820 3919 1.798223 GCAAGTACACATTCGACTGCA 59.202 47.619 2.19 0.00 0.00 4.41
3821 3920 2.411547 GCAAGTACACATTCGACTGCAC 60.412 50.000 2.19 0.00 0.00 4.57
3842 3941 5.047847 CACGTAGAGAACTGAAGAACCAAA 58.952 41.667 0.00 0.00 0.00 3.28
3850 3949 4.170468 ACTGAAGAACCAAACCAGTGAT 57.830 40.909 0.00 0.00 36.80 3.06
3853 3952 6.306987 ACTGAAGAACCAAACCAGTGATAAT 58.693 36.000 0.00 0.00 36.80 1.28
4017 4124 6.821388 ACTGAAGCTGAATAACATACTAGGG 58.179 40.000 0.00 0.00 0.00 3.53
4025 4132 7.224949 GCTGAATAACATACTAGGGACAGTTTC 59.775 40.741 0.00 0.00 0.00 2.78
4029 4177 5.069501 ACATACTAGGGACAGTTTCGTTC 57.930 43.478 0.00 0.00 0.00 3.95
4030 4178 4.525487 ACATACTAGGGACAGTTTCGTTCA 59.475 41.667 0.00 0.00 0.00 3.18
4047 4195 6.340962 TCGTTCATACTCTTTTGGAGAAGA 57.659 37.500 0.00 0.00 44.45 2.87
4049 4197 7.214381 TCGTTCATACTCTTTTGGAGAAGAAA 58.786 34.615 0.00 0.00 44.45 2.52
4050 4198 7.878127 TCGTTCATACTCTTTTGGAGAAGAAAT 59.122 33.333 0.00 0.00 44.45 2.17
4051 4199 7.959651 CGTTCATACTCTTTTGGAGAAGAAATG 59.040 37.037 0.00 0.00 44.45 2.32
4052 4200 8.787852 GTTCATACTCTTTTGGAGAAGAAATGT 58.212 33.333 0.00 0.00 44.45 2.71
4059 4207 5.643379 TTTGGAGAAGAAATGTGCCATAC 57.357 39.130 0.00 0.00 0.00 2.39
4116 4264 1.000955 CCAGCGGCCAGGTAGTAATAG 59.999 57.143 2.24 0.00 0.00 1.73
4117 4265 1.961394 CAGCGGCCAGGTAGTAATAGA 59.039 52.381 2.24 0.00 0.00 1.98
4118 4266 2.029828 CAGCGGCCAGGTAGTAATAGAG 60.030 54.545 2.24 0.00 0.00 2.43
4125 4273 7.334090 CGGCCAGGTAGTAATAGAGTATAGTA 58.666 42.308 2.24 0.00 0.00 1.82
4136 4284 3.336468 AGAGTATAGTAGACATCGCCCG 58.664 50.000 0.00 0.00 0.00 6.13
4140 4288 0.107066 TAGTAGACATCGCCCGTGGA 60.107 55.000 0.00 0.00 0.00 4.02
4191 4344 4.351938 CGAGGCGACGACACCCAA 62.352 66.667 2.19 0.00 35.09 4.12
4192 4345 2.432628 GAGGCGACGACACCCAAG 60.433 66.667 2.19 0.00 0.00 3.61
4193 4346 3.222354 GAGGCGACGACACCCAAGT 62.222 63.158 2.19 0.00 0.00 3.16
4194 4347 2.737376 GGCGACGACACCCAAGTC 60.737 66.667 0.00 0.00 35.19 3.01
4237 4395 2.291741 GCAGGCACAATATAAGTGAGGC 59.708 50.000 11.29 7.50 39.30 4.70
4257 4415 1.092348 GACGCCCAAGGTTAACATCC 58.908 55.000 8.10 0.00 0.00 3.51
4268 4426 2.749621 GGTTAACATCCTCTGCAAGGTG 59.250 50.000 8.10 12.21 46.32 4.00
4269 4427 3.559171 GGTTAACATCCTCTGCAAGGTGA 60.559 47.826 8.10 0.00 46.32 4.02
4270 4428 2.191128 AACATCCTCTGCAAGGTGAC 57.809 50.000 12.71 0.00 46.32 3.67
4271 4429 1.356124 ACATCCTCTGCAAGGTGACT 58.644 50.000 12.71 0.00 46.32 3.41
4284 4442 2.222027 AGGTGACTTGTAGCTTTGTGC 58.778 47.619 0.00 0.00 37.44 4.57
4286 4444 4.300045 AGGTGACTTGTAGCTTTGTGCTG 61.300 47.826 0.00 0.00 46.98 4.41
4287 4445 6.735875 AGGTGACTTGTAGCTTTGTGCTGT 62.736 45.833 0.00 0.00 46.98 4.40
4318 4476 0.456221 AACGTAGAGGCCATCGTCTG 59.544 55.000 5.01 0.00 37.90 3.51
4321 4479 0.249238 GTAGAGGCCATCGTCTGCAG 60.249 60.000 7.63 7.63 38.90 4.41
4322 4480 2.021068 TAGAGGCCATCGTCTGCAGC 62.021 60.000 9.47 3.23 37.90 5.25
4331 4489 2.031516 CGTCTGCAGCCACAAGGAG 61.032 63.158 9.47 0.00 36.89 3.69
4393 4551 2.799917 GCAAGACATAGGTACTGCTCCG 60.800 54.545 6.16 0.00 41.52 4.63
4415 4573 4.013582 GCTCTGCAGCACTCTTTTATTC 57.986 45.455 9.47 0.00 46.06 1.75
4416 4574 3.438087 GCTCTGCAGCACTCTTTTATTCA 59.562 43.478 9.47 0.00 46.06 2.57
4419 4577 6.187125 TCTGCAGCACTCTTTTATTCATTC 57.813 37.500 9.47 0.00 0.00 2.67
4420 4578 5.124457 TCTGCAGCACTCTTTTATTCATTCC 59.876 40.000 9.47 0.00 0.00 3.01
4421 4579 4.766373 TGCAGCACTCTTTTATTCATTCCA 59.234 37.500 0.00 0.00 0.00 3.53
4422 4580 5.098211 GCAGCACTCTTTTATTCATTCCAC 58.902 41.667 0.00 0.00 0.00 4.02
4424 4582 6.094048 GCAGCACTCTTTTATTCATTCCACTA 59.906 38.462 0.00 0.00 0.00 2.74
4425 4583 7.362056 GCAGCACTCTTTTATTCATTCCACTAA 60.362 37.037 0.00 0.00 0.00 2.24
4426 4584 8.514594 CAGCACTCTTTTATTCATTCCACTAAA 58.485 33.333 0.00 0.00 0.00 1.85
4427 4585 9.077885 AGCACTCTTTTATTCATTCCACTAAAA 57.922 29.630 0.00 0.00 0.00 1.52
4450 4609 5.412526 AAAGCACTCACAATTTTTGCATG 57.587 34.783 0.00 0.00 35.57 4.06
4456 4615 5.462729 CACTCACAATTTTTGCATGCACTTA 59.537 36.000 22.58 8.65 0.00 2.24
4457 4616 5.463061 ACTCACAATTTTTGCATGCACTTAC 59.537 36.000 22.58 0.00 0.00 2.34
4474 4676 7.398829 TGCACTTACAAATTTCCTCCAGTATA 58.601 34.615 0.00 0.00 0.00 1.47
4488 4690 9.944376 TTCCTCCAGTATATATATTTTGAGCAC 57.056 33.333 0.00 0.00 0.00 4.40
4529 4731 1.398692 TGCCGCTTTTGAGGAACTTT 58.601 45.000 0.00 0.00 41.55 2.66
4532 4734 2.095212 GCCGCTTTTGAGGAACTTTAGG 60.095 50.000 0.00 0.00 41.55 2.69
4534 4736 2.095212 CGCTTTTGAGGAACTTTAGGCC 60.095 50.000 0.00 0.00 41.55 5.19
4540 4742 6.834168 TTTGAGGAACTTTAGGCCAATTAG 57.166 37.500 5.01 0.00 41.55 1.73
4568 4770 9.933723 GTAACTACTTGGTATTCTTTGTCCTTA 57.066 33.333 0.00 0.00 0.00 2.69
4608 4813 9.683069 AAAGCCAATTATTCAAGCTAATTATCG 57.317 29.630 0.00 0.00 32.39 2.92
4618 4826 7.757097 TCAAGCTAATTATCGTTCTCTCAAC 57.243 36.000 0.00 0.00 0.00 3.18
4728 4936 1.519455 CTTCTACCTCTTGGGCGCG 60.519 63.158 0.00 0.00 39.10 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.437049 CGGAGGGAGTGAAAAACAAGATC 59.563 47.826 0.00 0.00 0.00 2.75
3 4 2.171870 ACGGAGGGAGTGAAAAACAAGA 59.828 45.455 0.00 0.00 0.00 3.02
4 5 2.548480 GACGGAGGGAGTGAAAAACAAG 59.452 50.000 0.00 0.00 0.00 3.16
5 6 2.567985 GACGGAGGGAGTGAAAAACAA 58.432 47.619 0.00 0.00 0.00 2.83
6 7 1.202722 GGACGGAGGGAGTGAAAAACA 60.203 52.381 0.00 0.00 0.00 2.83
7 8 1.520494 GGACGGAGGGAGTGAAAAAC 58.480 55.000 0.00 0.00 0.00 2.43
8 9 0.399075 GGGACGGAGGGAGTGAAAAA 59.601 55.000 0.00 0.00 0.00 1.94
23 24 8.182227 CCAAATCTAAGAAAAGTAATTCGGGAC 58.818 37.037 0.00 0.00 34.46 4.46
24 25 7.338449 CCCAAATCTAAGAAAAGTAATTCGGGA 59.662 37.037 0.00 0.00 34.46 5.14
25 26 7.338449 TCCCAAATCTAAGAAAAGTAATTCGGG 59.662 37.037 0.00 0.00 34.46 5.14
26 27 8.182227 GTCCCAAATCTAAGAAAAGTAATTCGG 58.818 37.037 0.00 0.00 34.46 4.30
27 28 7.903431 CGTCCCAAATCTAAGAAAAGTAATTCG 59.097 37.037 0.00 0.00 34.46 3.34
28 29 8.182227 CCGTCCCAAATCTAAGAAAAGTAATTC 58.818 37.037 0.00 0.00 0.00 2.17
29 30 7.886446 TCCGTCCCAAATCTAAGAAAAGTAATT 59.114 33.333 0.00 0.00 0.00 1.40
30 31 7.399634 TCCGTCCCAAATCTAAGAAAAGTAAT 58.600 34.615 0.00 0.00 0.00 1.89
31 32 6.771573 TCCGTCCCAAATCTAAGAAAAGTAA 58.228 36.000 0.00 0.00 0.00 2.24
32 33 6.363167 TCCGTCCCAAATCTAAGAAAAGTA 57.637 37.500 0.00 0.00 0.00 2.24
33 34 5.237236 TCCGTCCCAAATCTAAGAAAAGT 57.763 39.130 0.00 0.00 0.00 2.66
34 35 4.636206 CCTCCGTCCCAAATCTAAGAAAAG 59.364 45.833 0.00 0.00 0.00 2.27
35 36 4.042435 ACCTCCGTCCCAAATCTAAGAAAA 59.958 41.667 0.00 0.00 0.00 2.29
36 37 3.585732 ACCTCCGTCCCAAATCTAAGAAA 59.414 43.478 0.00 0.00 0.00 2.52
37 38 3.178865 ACCTCCGTCCCAAATCTAAGAA 58.821 45.455 0.00 0.00 0.00 2.52
38 39 2.829023 ACCTCCGTCCCAAATCTAAGA 58.171 47.619 0.00 0.00 0.00 2.10
39 40 4.748277 TTACCTCCGTCCCAAATCTAAG 57.252 45.455 0.00 0.00 0.00 2.18
40 41 5.662208 TGTATTACCTCCGTCCCAAATCTAA 59.338 40.000 0.00 0.00 0.00 2.10
41 42 5.210430 TGTATTACCTCCGTCCCAAATCTA 58.790 41.667 0.00 0.00 0.00 1.98
42 43 4.035112 TGTATTACCTCCGTCCCAAATCT 58.965 43.478 0.00 0.00 0.00 2.40
43 44 4.411256 TGTATTACCTCCGTCCCAAATC 57.589 45.455 0.00 0.00 0.00 2.17
44 45 4.847990 TTGTATTACCTCCGTCCCAAAT 57.152 40.909 0.00 0.00 0.00 2.32
45 46 4.637387 TTTGTATTACCTCCGTCCCAAA 57.363 40.909 0.00 0.00 0.00 3.28
46 47 4.472108 AGATTTGTATTACCTCCGTCCCAA 59.528 41.667 0.00 0.00 0.00 4.12
47 48 4.035112 AGATTTGTATTACCTCCGTCCCA 58.965 43.478 0.00 0.00 0.00 4.37
48 49 4.684484 AGATTTGTATTACCTCCGTCCC 57.316 45.455 0.00 0.00 0.00 4.46
49 50 6.922407 GTCTTAGATTTGTATTACCTCCGTCC 59.078 42.308 0.00 0.00 0.00 4.79
50 51 7.486647 TGTCTTAGATTTGTATTACCTCCGTC 58.513 38.462 0.00 0.00 0.00 4.79
51 52 7.414222 TGTCTTAGATTTGTATTACCTCCGT 57.586 36.000 0.00 0.00 0.00 4.69
52 53 7.980099 ACTTGTCTTAGATTTGTATTACCTCCG 59.020 37.037 0.00 0.00 0.00 4.63
62 63 8.793592 GTCCCAAATTACTTGTCTTAGATTTGT 58.206 33.333 0.00 0.00 34.40 2.83
63 64 7.962918 CGTCCCAAATTACTTGTCTTAGATTTG 59.037 37.037 0.00 0.00 35.40 2.32
64 65 7.120726 CCGTCCCAAATTACTTGTCTTAGATTT 59.879 37.037 0.00 0.00 32.65 2.17
65 66 6.598064 CCGTCCCAAATTACTTGTCTTAGATT 59.402 38.462 0.00 0.00 32.65 2.40
66 67 6.070424 TCCGTCCCAAATTACTTGTCTTAGAT 60.070 38.462 0.00 0.00 32.65 1.98
67 68 5.246656 TCCGTCCCAAATTACTTGTCTTAGA 59.753 40.000 0.00 0.00 32.65 2.10
68 69 5.484715 TCCGTCCCAAATTACTTGTCTTAG 58.515 41.667 0.00 0.00 32.65 2.18
69 70 5.484715 CTCCGTCCCAAATTACTTGTCTTA 58.515 41.667 0.00 0.00 32.65 2.10
70 71 4.324267 CTCCGTCCCAAATTACTTGTCTT 58.676 43.478 0.00 0.00 32.65 3.01
71 72 3.307480 CCTCCGTCCCAAATTACTTGTCT 60.307 47.826 0.00 0.00 32.65 3.41
72 73 3.007635 CCTCCGTCCCAAATTACTTGTC 58.992 50.000 0.00 0.00 32.65 3.18
73 74 2.374170 ACCTCCGTCCCAAATTACTTGT 59.626 45.455 0.00 0.00 32.65 3.16
74 75 3.067684 ACCTCCGTCCCAAATTACTTG 57.932 47.619 0.00 0.00 34.52 3.16
75 76 4.914177 TTACCTCCGTCCCAAATTACTT 57.086 40.909 0.00 0.00 0.00 2.24
76 77 5.426185 TGTATTACCTCCGTCCCAAATTACT 59.574 40.000 0.00 0.00 0.00 2.24
77 78 5.673514 TGTATTACCTCCGTCCCAAATTAC 58.326 41.667 0.00 0.00 0.00 1.89
78 79 5.954153 TGTATTACCTCCGTCCCAAATTA 57.046 39.130 0.00 0.00 0.00 1.40
79 80 4.847990 TGTATTACCTCCGTCCCAAATT 57.152 40.909 0.00 0.00 0.00 1.82
80 81 5.382664 AATGTATTACCTCCGTCCCAAAT 57.617 39.130 0.00 0.00 0.00 2.32
81 82 4.847990 AATGTATTACCTCCGTCCCAAA 57.152 40.909 0.00 0.00 0.00 3.28
82 83 4.847990 AAATGTATTACCTCCGTCCCAA 57.152 40.909 0.00 0.00 0.00 4.12
83 84 4.847990 AAAATGTATTACCTCCGTCCCA 57.152 40.909 0.00 0.00 0.00 4.37
84 85 5.180680 GCATAAAATGTATTACCTCCGTCCC 59.819 44.000 0.00 0.00 0.00 4.46
85 86 5.761234 TGCATAAAATGTATTACCTCCGTCC 59.239 40.000 0.00 0.00 0.00 4.79
86 87 6.854496 TGCATAAAATGTATTACCTCCGTC 57.146 37.500 0.00 0.00 0.00 4.79
87 88 7.633193 TTTGCATAAAATGTATTACCTCCGT 57.367 32.000 0.00 0.00 0.00 4.69
88 89 6.636850 GCTTTGCATAAAATGTATTACCTCCG 59.363 38.462 0.00 0.00 0.00 4.63
89 90 6.923508 GGCTTTGCATAAAATGTATTACCTCC 59.076 38.462 0.00 0.00 0.00 4.30
90 91 7.488322 TGGCTTTGCATAAAATGTATTACCTC 58.512 34.615 0.00 0.00 0.00 3.85
91 92 7.416964 TGGCTTTGCATAAAATGTATTACCT 57.583 32.000 0.00 0.00 0.00 3.08
92 93 8.550376 CAATGGCTTTGCATAAAATGTATTACC 58.450 33.333 0.00 0.00 0.00 2.85
93 94 9.097257 ACAATGGCTTTGCATAAAATGTATTAC 57.903 29.630 12.54 0.00 39.03 1.89
94 95 9.664332 AACAATGGCTTTGCATAAAATGTATTA 57.336 25.926 12.54 0.00 39.03 0.98
95 96 8.452534 CAACAATGGCTTTGCATAAAATGTATT 58.547 29.630 12.54 0.00 39.03 1.89
96 97 7.607223 ACAACAATGGCTTTGCATAAAATGTAT 59.393 29.630 12.54 0.00 39.03 2.29
97 98 6.933521 ACAACAATGGCTTTGCATAAAATGTA 59.066 30.769 12.54 0.00 39.03 2.29
98 99 5.764192 ACAACAATGGCTTTGCATAAAATGT 59.236 32.000 12.54 4.90 39.03 2.71
99 100 6.243811 ACAACAATGGCTTTGCATAAAATG 57.756 33.333 12.54 4.39 39.03 2.32
100 101 6.294065 CCAACAACAATGGCTTTGCATAAAAT 60.294 34.615 12.54 0.00 39.03 1.82
101 102 5.008415 CCAACAACAATGGCTTTGCATAAAA 59.992 36.000 12.54 0.00 39.03 1.52
102 103 4.514441 CCAACAACAATGGCTTTGCATAAA 59.486 37.500 12.54 0.00 39.03 1.40
103 104 4.063689 CCAACAACAATGGCTTTGCATAA 58.936 39.130 12.54 0.00 39.03 1.90
104 105 3.070734 ACCAACAACAATGGCTTTGCATA 59.929 39.130 12.54 0.00 41.89 3.14
105 106 2.158784 ACCAACAACAATGGCTTTGCAT 60.159 40.909 12.54 0.21 41.89 3.96
106 107 1.209019 ACCAACAACAATGGCTTTGCA 59.791 42.857 12.54 0.00 41.89 4.08
107 108 1.866601 GACCAACAACAATGGCTTTGC 59.133 47.619 12.54 0.00 41.89 3.68
108 109 2.126467 CGACCAACAACAATGGCTTTG 58.874 47.619 11.20 11.20 41.89 2.77
109 110 1.068434 CCGACCAACAACAATGGCTTT 59.932 47.619 0.00 0.00 41.89 3.51
110 111 0.673437 CCGACCAACAACAATGGCTT 59.327 50.000 0.00 0.00 41.89 4.35
111 112 0.179004 TCCGACCAACAACAATGGCT 60.179 50.000 0.00 0.00 41.89 4.75
112 113 0.039527 GTCCGACCAACAACAATGGC 60.040 55.000 0.00 0.00 41.89 4.40
113 114 0.596082 GGTCCGACCAACAACAATGG 59.404 55.000 13.05 0.00 43.84 3.16
114 115 0.596082 GGGTCCGACCAACAACAATG 59.404 55.000 19.43 0.00 41.02 2.82
115 116 0.476771 AGGGTCCGACCAACAACAAT 59.523 50.000 19.43 0.00 41.02 2.71
116 117 0.256464 AAGGGTCCGACCAACAACAA 59.744 50.000 19.43 0.00 41.02 2.83
117 118 0.179040 GAAGGGTCCGACCAACAACA 60.179 55.000 19.43 0.00 41.02 3.33
118 119 0.887836 GGAAGGGTCCGACCAACAAC 60.888 60.000 19.43 1.34 41.02 3.32
119 120 1.452801 GGAAGGGTCCGACCAACAA 59.547 57.895 19.43 0.00 41.02 2.83
120 121 2.522367 GGGAAGGGTCCGACCAACA 61.522 63.158 19.43 0.00 46.04 3.33
121 122 2.350134 GGGAAGGGTCCGACCAAC 59.650 66.667 19.43 9.19 46.04 3.77
122 123 2.931649 GGGGAAGGGTCCGACCAA 60.932 66.667 19.43 0.00 46.04 3.67
123 124 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
124 125 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
125 126 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
126 127 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
127 128 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
128 129 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
129 130 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
130 131 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
131 132 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
132 133 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
133 134 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
145 146 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
148 149 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
149 150 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
150 151 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
151 152 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
153 154 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
154 155 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
155 156 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
156 157 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
157 158 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
158 159 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
159 160 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
160 161 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
161 162 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
179 180 3.386402 ACTGTAAACAACAACAATGGGGG 59.614 43.478 0.00 0.00 37.74 5.40
180 181 4.664150 ACTGTAAACAACAACAATGGGG 57.336 40.909 0.00 0.00 37.74 4.96
181 182 7.307101 GCATAAACTGTAAACAACAACAATGGG 60.307 37.037 0.00 0.00 37.74 4.00
182 183 7.223582 TGCATAAACTGTAAACAACAACAATGG 59.776 33.333 0.00 0.00 37.74 3.16
183 184 8.124586 TGCATAAACTGTAAACAACAACAATG 57.875 30.769 0.00 0.00 37.74 2.82
184 185 8.709386 TTGCATAAACTGTAAACAACAACAAT 57.291 26.923 0.00 0.00 37.74 2.71
185 186 8.534333 TTTGCATAAACTGTAAACAACAACAA 57.466 26.923 0.00 0.00 37.74 2.83
186 187 7.276658 CCTTTGCATAAACTGTAAACAACAACA 59.723 33.333 0.00 0.00 37.74 3.33
187 188 7.617557 CCTTTGCATAAACTGTAAACAACAAC 58.382 34.615 0.00 0.00 37.74 3.32
188 189 6.256757 GCCTTTGCATAAACTGTAAACAACAA 59.743 34.615 0.00 0.00 34.94 2.83
189 190 5.751028 GCCTTTGCATAAACTGTAAACAACA 59.249 36.000 0.00 0.00 34.94 3.33
190 191 5.751028 TGCCTTTGCATAAACTGTAAACAAC 59.249 36.000 0.00 0.00 44.23 3.32
191 192 5.907207 TGCCTTTGCATAAACTGTAAACAA 58.093 33.333 0.00 0.00 44.23 2.83
192 193 5.521906 TGCCTTTGCATAAACTGTAAACA 57.478 34.783 0.00 0.00 44.23 2.83
206 207 4.754114 TGGACATTTTAACAATGCCTTTGC 59.246 37.500 15.65 0.00 39.03 3.68
207 208 7.437793 AATGGACATTTTAACAATGCCTTTG 57.562 32.000 15.65 0.00 41.36 2.77
208 209 7.718753 TCAAATGGACATTTTAACAATGCCTTT 59.281 29.630 7.51 13.93 38.84 3.11
209 210 7.173047 GTCAAATGGACATTTTAACAATGCCTT 59.827 33.333 7.51 11.16 46.19 4.35
210 211 6.650390 GTCAAATGGACATTTTAACAATGCCT 59.350 34.615 7.51 2.30 46.19 4.75
211 212 6.830736 GTCAAATGGACATTTTAACAATGCC 58.169 36.000 7.51 10.67 46.19 4.40
237 238 9.988350 ACACACGAATTGAGTGAATTATTTATC 57.012 29.630 15.19 0.00 41.13 1.75
249 250 2.910688 AGACCACACACGAATTGAGT 57.089 45.000 0.00 0.00 0.00 3.41
258 259 4.437390 GCTTGCACATATAAGACCACACAC 60.437 45.833 0.00 0.00 0.00 3.82
260 261 3.941483 AGCTTGCACATATAAGACCACAC 59.059 43.478 0.00 0.00 0.00 3.82
269 270 7.121907 TGTCCATTACAAAAGCTTGCACATATA 59.878 33.333 0.00 0.00 35.84 0.86
274 275 3.976169 TGTCCATTACAAAAGCTTGCAC 58.024 40.909 0.00 0.00 35.84 4.57
293 294 7.563724 TTCCCCATTAGACTAGTTTAGTTGT 57.436 36.000 0.00 0.00 39.59 3.32
294 295 8.101419 AGTTTCCCCATTAGACTAGTTTAGTTG 58.899 37.037 0.00 0.00 39.59 3.16
302 303 8.893727 CAAAATACAGTTTCCCCATTAGACTAG 58.106 37.037 0.00 0.00 0.00 2.57
353 354 6.715264 CCCCTTTGTTACAAGATCAAGTTAGT 59.285 38.462 0.00 0.00 0.00 2.24
356 357 5.701224 TCCCCTTTGTTACAAGATCAAGTT 58.299 37.500 0.00 0.00 0.00 2.66
358 359 5.534654 TGTTCCCCTTTGTTACAAGATCAAG 59.465 40.000 0.00 0.00 0.00 3.02
375 376 0.919710 ATAAGTGCCCTCTGTTCCCC 59.080 55.000 0.00 0.00 0.00 4.81
405 406 8.748380 ACTCGGAAATTTTCAAATTCTGAATC 57.252 30.769 11.09 0.00 43.64 2.52
406 407 9.196552 GAACTCGGAAATTTTCAAATTCTGAAT 57.803 29.630 11.09 0.00 43.64 2.57
418 419 7.050970 AGCTAAAAAGGAACTCGGAAATTTT 57.949 32.000 0.00 0.00 38.49 1.82
433 434 0.247460 GGGCAGGCCAAGCTAAAAAG 59.753 55.000 18.17 0.00 37.98 2.27
465 466 2.431782 CCCACCAAAATAAGATGGGCAG 59.568 50.000 0.00 0.00 43.51 4.85
470 471 6.219417 TGCATAACCCACCAAAATAAGATG 57.781 37.500 0.00 0.00 0.00 2.90
509 510 8.437742 CAATTTGCTTTGCTTAATTAAGACAGG 58.562 33.333 26.00 18.12 35.33 4.00
664 696 5.914033 TGCACTAGAGTTGATTATGGTACC 58.086 41.667 4.43 4.43 0.00 3.34
665 697 7.843490 TTTGCACTAGAGTTGATTATGGTAC 57.157 36.000 0.00 0.00 0.00 3.34
666 698 8.318412 TCTTTTGCACTAGAGTTGATTATGGTA 58.682 33.333 0.00 0.00 0.00 3.25
680 712 6.604735 AGTACAAACTGTCTTTTGCACTAG 57.395 37.500 0.00 0.00 40.02 2.57
681 713 6.995511 AAGTACAAACTGTCTTTTGCACTA 57.004 33.333 0.00 0.00 40.64 2.74
696 728 4.808364 GCAAATGAACTGCCAAAGTACAAA 59.192 37.500 0.00 0.00 38.56 2.83
700 732 6.398234 TTTAGCAAATGAACTGCCAAAGTA 57.602 33.333 0.00 0.00 40.86 2.24
701 733 4.935352 TTAGCAAATGAACTGCCAAAGT 57.065 36.364 0.00 0.00 40.86 2.66
782 814 9.974980 GGTATTTTCTGTTTTTGAGGAAACATA 57.025 29.630 3.94 0.00 45.44 2.29
786 818 7.418483 CCCTGGTATTTTCTGTTTTTGAGGAAA 60.418 37.037 0.00 0.00 0.00 3.13
844 876 3.818961 TGTCTTGTCGTAACCTAGACG 57.181 47.619 0.00 0.00 38.19 4.18
951 983 7.148853 GCAAGTTGCACTTCAGATTTTCAATAG 60.149 37.037 22.90 0.00 44.26 1.73
995 1027 8.986929 ACAGCCTAAAAGAATTATCATTAGCT 57.013 30.769 0.00 0.00 31.23 3.32
1263 1295 4.084223 GCATCACATGGCTCAAAAGTTTTG 60.084 41.667 20.20 20.20 0.00 2.44
1287 1319 3.965694 AGGAGTGTAATCGGTGTACTCT 58.034 45.455 0.00 2.59 38.22 3.24
1627 1659 1.494721 TGCAGTTCTCACTTTCCCCTT 59.505 47.619 0.00 0.00 0.00 3.95
1918 1950 4.224147 TGTCAAAGACTCGGGATGGAAATA 59.776 41.667 0.00 0.00 33.15 1.40
1955 1987 4.339247 CCGCTCCATGGAATTAAACATCTT 59.661 41.667 17.00 0.00 0.00 2.40
2086 2119 1.893801 CCGGCCTAAGTACCCTATCAG 59.106 57.143 0.00 0.00 0.00 2.90
2147 2180 3.281727 TGCCATCCCTTGTAGTGAATC 57.718 47.619 0.00 0.00 0.00 2.52
2188 2221 6.763355 TGTTCTATTTTTCTCTGCTCACTCT 58.237 36.000 0.00 0.00 0.00 3.24
2833 2866 7.208080 ACCAGTCGTGATACATTCCTATTAAC 58.792 38.462 0.00 0.00 0.00 2.01
2903 2936 6.183359 CGAACATAAGTGAGAAACAAAATGCG 60.183 38.462 0.00 0.00 0.00 4.73
2966 2999 4.867608 GCAAAAGTAAAAAGGTCTGTTGCA 59.132 37.500 12.49 0.00 45.90 4.08
2990 3023 1.216678 AGTTCCCCACATTGTGAACCA 59.783 47.619 18.33 0.00 38.24 3.67
2998 3031 4.829492 CAGAAAAGAGAAGTTCCCCACATT 59.171 41.667 0.00 0.00 0.00 2.71
3058 3134 5.001232 ACACACAACAATACATGAGTACCC 58.999 41.667 0.00 0.00 31.96 3.69
3098 3174 3.738982 TGGCACACGGGAGATTATATTG 58.261 45.455 0.00 0.00 0.00 1.90
3105 3181 1.768275 TGATATTGGCACACGGGAGAT 59.232 47.619 0.00 0.00 39.29 2.75
3106 3182 1.138859 CTGATATTGGCACACGGGAGA 59.861 52.381 0.00 0.00 39.29 3.71
3107 3183 1.134401 ACTGATATTGGCACACGGGAG 60.134 52.381 0.00 0.00 39.29 4.30
3109 3185 1.750193 AACTGATATTGGCACACGGG 58.250 50.000 0.00 0.00 39.29 5.28
3110 3186 4.394920 AGTTTAACTGATATTGGCACACGG 59.605 41.667 0.00 0.00 39.29 4.94
3191 3274 7.583860 CACATGTGCATCATCATTTAACAAA 57.416 32.000 13.94 0.00 34.09 2.83
3229 3312 7.326063 GCAAACTCGTATTTCTAAAAGCACAAT 59.674 33.333 0.00 0.00 0.00 2.71
3265 3348 7.916914 AAACTAACACAAGAAGTACAACTGT 57.083 32.000 0.00 0.00 0.00 3.55
3301 3387 6.865205 CACAAATAAAAAGGAAGCTTCTCAGG 59.135 38.462 25.05 7.41 0.00 3.86
3303 3389 7.068103 TCACACAAATAAAAAGGAAGCTTCTCA 59.932 33.333 25.05 5.68 0.00 3.27
3344 3432 3.815401 CCCTTCACACCTGTAACAAGAAG 59.185 47.826 0.00 0.00 0.00 2.85
3460 3548 6.092807 GCCAACAAGGTCTACAGATTTAGAAG 59.907 42.308 0.00 0.00 40.61 2.85
3462 3550 5.248477 AGCCAACAAGGTCTACAGATTTAGA 59.752 40.000 0.00 0.00 40.61 2.10
3470 3558 5.185454 CAATATCAGCCAACAAGGTCTACA 58.815 41.667 0.00 0.00 40.61 2.74
3476 3564 4.264253 TCAGACAATATCAGCCAACAAGG 58.736 43.478 0.00 0.00 41.84 3.61
3754 3852 6.522054 AGTTATCCTGAAGTGAAACGAGAAA 58.478 36.000 0.00 0.00 45.86 2.52
3781 3880 2.666098 AACTAACGCTGCCGGGGAT 61.666 57.895 2.18 0.00 39.22 3.85
3796 3895 3.494626 CAGTCGAATGTGTACTTGCAACT 59.505 43.478 4.35 0.00 0.00 3.16
3813 3912 1.197036 TCAGTTCTCTACGTGCAGTCG 59.803 52.381 0.00 0.00 0.00 4.18
3817 3916 3.552273 GGTTCTTCAGTTCTCTACGTGCA 60.552 47.826 0.00 0.00 0.00 4.57
3820 3919 4.931661 TTGGTTCTTCAGTTCTCTACGT 57.068 40.909 0.00 0.00 0.00 3.57
3821 3920 4.448060 GGTTTGGTTCTTCAGTTCTCTACG 59.552 45.833 0.00 0.00 0.00 3.51
3842 3941 9.295825 CAGATTACTCTCTAGATTATCACTGGT 57.704 37.037 0.00 0.00 0.00 4.00
3853 3952 9.961264 TGACTAGAAAACAGATTACTCTCTAGA 57.039 33.333 9.55 0.00 30.78 2.43
3866 3973 4.821805 ACACCAACCATGACTAGAAAACAG 59.178 41.667 0.00 0.00 0.00 3.16
3870 3977 4.787551 ACAACACCAACCATGACTAGAAA 58.212 39.130 0.00 0.00 0.00 2.52
3876 3983 6.512297 AGAAAAATACAACACCAACCATGAC 58.488 36.000 0.00 0.00 0.00 3.06
3878 3985 7.784633 AAAGAAAAATACAACACCAACCATG 57.215 32.000 0.00 0.00 0.00 3.66
3940 4047 9.388506 AGTTCATGGATTTCTAAGATACAACAG 57.611 33.333 0.00 0.00 0.00 3.16
4017 4124 6.202188 TCCAAAAGAGTATGAACGAAACTGTC 59.798 38.462 0.00 0.00 0.00 3.51
4025 4132 7.421530 TTTCTTCTCCAAAAGAGTATGAACG 57.578 36.000 0.00 0.00 43.71 3.95
4029 4177 7.025963 GCACATTTCTTCTCCAAAAGAGTATG 58.974 38.462 0.00 0.00 43.71 2.39
4030 4178 6.151817 GGCACATTTCTTCTCCAAAAGAGTAT 59.848 38.462 0.00 0.00 43.71 2.12
4051 4199 3.264897 CGGCAGCTCGTATGGCAC 61.265 66.667 0.00 0.00 43.01 5.01
4116 4264 3.072944 ACGGGCGATGTCTACTATACTC 58.927 50.000 0.00 0.00 0.00 2.59
4117 4265 2.812591 CACGGGCGATGTCTACTATACT 59.187 50.000 0.00 0.00 0.00 2.12
4118 4266 2.095364 CCACGGGCGATGTCTACTATAC 60.095 54.545 0.00 0.00 0.00 1.47
4125 4273 4.148825 GCTCCACGGGCGATGTCT 62.149 66.667 0.00 0.00 0.00 3.41
4154 4307 2.032681 GCCTCCGCTCACCTTGTT 59.967 61.111 0.00 0.00 0.00 2.83
4155 4308 2.925170 AGCCTCCGCTCACCTTGT 60.925 61.111 0.00 0.00 43.95 3.16
4224 4382 2.150397 GGCGTCGCCTCACTTATATT 57.850 50.000 28.98 0.00 46.69 1.28
4237 4395 0.725117 GATGTTAACCTTGGGCGTCG 59.275 55.000 2.48 0.00 0.00 5.12
4276 4434 1.080298 GGCCATCACAGCACAAAGC 60.080 57.895 0.00 0.00 46.19 3.51
4277 4435 1.210931 CGGCCATCACAGCACAAAG 59.789 57.895 2.24 0.00 0.00 2.77
4278 4436 1.228094 TCGGCCATCACAGCACAAA 60.228 52.632 2.24 0.00 0.00 2.83
4279 4437 1.965930 GTCGGCCATCACAGCACAA 60.966 57.895 2.24 0.00 0.00 3.33
4280 4438 2.358615 GTCGGCCATCACAGCACA 60.359 61.111 2.24 0.00 0.00 4.57
4281 4439 3.127533 GGTCGGCCATCACAGCAC 61.128 66.667 0.00 0.00 34.09 4.40
4282 4440 3.189376 TTGGTCGGCCATCACAGCA 62.189 57.895 10.94 0.00 45.56 4.41
4283 4441 2.359850 TTGGTCGGCCATCACAGC 60.360 61.111 10.94 0.00 45.56 4.40
4284 4442 2.390599 CGTTGGTCGGCCATCACAG 61.391 63.158 10.94 0.00 45.56 3.66
4285 4443 1.817911 TACGTTGGTCGGCCATCACA 61.818 55.000 10.94 0.00 45.56 3.58
4286 4444 1.079681 TACGTTGGTCGGCCATCAC 60.080 57.895 10.94 4.88 45.56 3.06
4287 4445 1.216977 CTACGTTGGTCGGCCATCA 59.783 57.895 10.94 0.00 45.56 3.07
4331 4489 1.474077 GCCATCTTCAACATCACCCAC 59.526 52.381 0.00 0.00 0.00 4.61
4393 4551 1.813513 TAAAAGAGTGCTGCAGAGCC 58.186 50.000 20.43 3.52 45.57 4.70
4426 4584 5.876612 TGCAAAAATTGTGAGTGCTTTTT 57.123 30.435 0.00 0.00 36.18 1.94
4427 4585 5.731126 GCATGCAAAAATTGTGAGTGCTTTT 60.731 36.000 14.21 0.00 36.18 2.27
4429 4587 3.249080 GCATGCAAAAATTGTGAGTGCTT 59.751 39.130 14.21 0.00 36.18 3.91
4438 4597 8.563289 AAATTTGTAAGTGCATGCAAAAATTG 57.437 26.923 24.58 0.00 38.19 2.32
4444 4603 5.212532 AGGAAATTTGTAAGTGCATGCAA 57.787 34.783 24.58 3.69 0.00 4.08
4450 4609 6.759497 ATACTGGAGGAAATTTGTAAGTGC 57.241 37.500 0.00 0.00 0.00 4.40
4474 4676 7.205297 GTGCTGGATTTGTGCTCAAAATATAT 58.795 34.615 17.04 1.30 44.97 0.86
4485 4687 1.443194 CAGCGTGCTGGATTTGTGC 60.443 57.895 14.00 0.00 40.17 4.57
4488 4690 0.453282 CGTTCAGCGTGCTGGATTTG 60.453 55.000 20.78 4.09 43.75 2.32
4540 4742 7.876582 AGGACAAAGAATACCAAGTAGTTACAC 59.123 37.037 0.00 0.00 0.00 2.90
4549 4751 9.613428 TCATACATAAGGACAAAGAATACCAAG 57.387 33.333 0.00 0.00 0.00 3.61
4582 4784 9.683069 CGATAATTAGCTTGAATAATTGGCTTT 57.317 29.630 0.00 0.00 35.17 3.51
4608 4813 4.180057 CACAGCATCCTAGTTGAGAGAAC 58.820 47.826 0.00 0.00 0.00 3.01
4618 4826 0.745845 GCCACACCACAGCATCCTAG 60.746 60.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.