Multiple sequence alignment - TraesCS5A01G420400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G420400 chr5A 100.000 3331 0 0 1 3331 606931407 606928077 0.000000e+00 6152.0
1 TraesCS5A01G420400 chr5A 81.829 820 113 25 1061 1874 606954110 606953321 0.000000e+00 656.0
2 TraesCS5A01G420400 chr5A 80.634 852 121 22 1 835 606955174 606954350 1.310000e-173 619.0
3 TraesCS5A01G420400 chr5A 88.136 59 7 0 2377 2435 656938218 656938276 1.660000e-08 71.3
4 TraesCS5A01G420400 chr5B 95.083 1261 55 1 1059 2319 597285826 597284573 0.000000e+00 1978.0
5 TraesCS5A01G420400 chr5B 88.532 872 62 15 2491 3331 597275686 597274822 0.000000e+00 1022.0
6 TraesCS5A01G420400 chr5B 82.864 782 125 3 55 835 597286904 597286131 0.000000e+00 693.0
7 TraesCS5A01G420400 chr5B 97.619 84 2 0 2303 2386 597279009 597278926 9.630000e-31 145.0
8 TraesCS5A01G420400 chr5D 92.794 902 44 5 1 889 486224049 486223156 0.000000e+00 1286.0
9 TraesCS5A01G420400 chr5D 94.093 728 37 2 1579 2306 486217232 486216511 0.000000e+00 1101.0
10 TraesCS5A01G420400 chr5D 93.705 699 23 8 890 1586 486218146 486217467 0.000000e+00 1027.0
11 TraesCS5A01G420400 chr5D 85.060 502 63 12 1059 1558 486228120 486227629 4.960000e-138 501.0
12 TraesCS5A01G420400 chr5D 88.811 143 16 0 54 196 486229637 486229495 3.420000e-40 176.0
13 TraesCS5A01G420400 chr5D 85.207 169 25 0 2130 2298 486226587 486226419 1.230000e-39 174.0
14 TraesCS5A01G420400 chr7A 90.909 55 4 1 2382 2435 306109789 306109735 4.610000e-09 73.1
15 TraesCS5A01G420400 chr7A 89.286 56 5 1 2372 2427 111959778 111959832 5.960000e-08 69.4
16 TraesCS5A01G420400 chr3A 93.878 49 2 1 2386 2434 560115363 560115410 4.610000e-09 73.1
17 TraesCS5A01G420400 chr3A 87.500 64 6 2 2373 2435 627964908 627964970 4.610000e-09 73.1
18 TraesCS5A01G420400 chr2A 85.714 70 5 4 2366 2435 31014065 31014129 5.960000e-08 69.4
19 TraesCS5A01G420400 chr7D 83.333 78 8 5 2360 2435 426733641 426733715 2.140000e-07 67.6
20 TraesCS5A01G420400 chr4B 85.938 64 5 4 2373 2435 673101926 673101986 7.710000e-07 65.8
21 TraesCS5A01G420400 chr6B 83.824 68 7 4 2358 2425 400088958 400089021 9.980000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G420400 chr5A 606928077 606931407 3330 True 6152.00 6152 100.0000 1 3331 1 chr5A.!!$R1 3330
1 TraesCS5A01G420400 chr5A 606953321 606955174 1853 True 637.50 656 81.2315 1 1874 2 chr5A.!!$R2 1873
2 TraesCS5A01G420400 chr5B 597284573 597286904 2331 True 1335.50 1978 88.9735 55 2319 2 chr5B.!!$R2 2264
3 TraesCS5A01G420400 chr5B 597274822 597279009 4187 True 583.50 1022 93.0755 2303 3331 2 chr5B.!!$R1 1028
4 TraesCS5A01G420400 chr5D 486216511 486218146 1635 True 1064.00 1101 93.8990 890 2306 2 chr5D.!!$R1 1416
5 TraesCS5A01G420400 chr5D 486223156 486229637 6481 True 534.25 1286 87.9680 1 2298 4 chr5D.!!$R2 2297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 1495 0.10412 ATCGTGATTTGGCCGATCGA 59.896 50.0 18.66 11.68 36.68 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2435 3867 0.179004 TCAAAGAATGCACCCACGGT 60.179 50.0 0.0 0.0 35.62 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.255242 CGATTATGGGAAATGAAGCATAAGTGT 60.255 37.037 0.00 0.00 0.00 3.55
30 31 5.389859 TGGGAAATGAAGCATAAGTGTTG 57.610 39.130 0.00 0.00 0.00 3.33
31 32 4.220382 TGGGAAATGAAGCATAAGTGTTGG 59.780 41.667 0.00 0.00 0.00 3.77
36 37 3.325870 TGAAGCATAAGTGTTGGTCGAG 58.674 45.455 0.00 0.00 0.00 4.04
40 41 2.484264 GCATAAGTGTTGGTCGAGCTTT 59.516 45.455 16.64 5.36 0.00 3.51
46 47 1.668751 TGTTGGTCGAGCTTTGTCAAC 59.331 47.619 16.64 10.79 36.15 3.18
79 92 1.004277 TCCTTGTCCATACCAAGTGGC 59.996 52.381 0.00 0.00 38.07 5.01
97 110 1.966451 CGGTGGCAGAGTCCCAAAC 60.966 63.158 0.00 0.00 33.39 2.93
103 116 1.369625 GCAGAGTCCCAAACGTATGG 58.630 55.000 0.00 0.00 40.35 2.74
105 118 2.618053 CAGAGTCCCAAACGTATGGTC 58.382 52.381 0.00 0.00 38.91 4.02
143 156 2.840038 ACAATGACCATCTCAGCAGGTA 59.160 45.455 0.00 0.00 35.36 3.08
150 163 3.070734 ACCATCTCAGCAGGTATGATGTC 59.929 47.826 10.98 0.00 43.43 3.06
158 171 4.813161 CAGCAGGTATGATGTCGATTTTCT 59.187 41.667 0.00 0.00 38.05 2.52
160 173 4.572389 GCAGGTATGATGTCGATTTTCTGT 59.428 41.667 0.00 0.00 0.00 3.41
175 188 6.238374 CGATTTTCTGTTCGGCTAACCAATAT 60.238 38.462 0.00 0.00 37.27 1.28
177 190 8.691661 ATTTTCTGTTCGGCTAACCAATATAT 57.308 30.769 0.00 0.00 37.27 0.86
178 191 7.490962 TTTCTGTTCGGCTAACCAATATATG 57.509 36.000 0.00 0.00 37.27 1.78
196 209 2.121291 TGTGTCCTTGTGCAAAGACA 57.879 45.000 11.11 11.11 38.88 3.41
199 212 2.722094 TGTCCTTGTGCAAAGACACTT 58.278 42.857 11.11 0.00 36.98 3.16
201 214 2.023673 TCCTTGTGCAAAGACACTTGG 58.976 47.619 9.37 0.00 41.30 3.61
203 216 0.459489 TTGTGCAAAGACACTTGGCC 59.541 50.000 0.00 0.00 41.30 5.36
204 217 1.008538 GTGCAAAGACACTTGGCCG 60.009 57.895 8.16 0.00 37.58 6.13
206 219 0.537143 TGCAAAGACACTTGGCCGAT 60.537 50.000 8.16 0.00 0.00 4.18
207 220 0.169009 GCAAAGACACTTGGCCGATC 59.831 55.000 0.00 0.00 0.00 3.69
212 709 0.321653 GACACTTGGCCGATCAGGTT 60.322 55.000 0.00 0.00 43.70 3.50
223 720 1.743394 CGATCAGGTTTTACCCAAGCC 59.257 52.381 0.00 0.00 39.75 4.35
246 746 2.341543 CCTCTCATGGATCGGCCG 59.658 66.667 22.12 22.12 40.66 6.13
247 747 2.356793 CTCTCATGGATCGGCCGC 60.357 66.667 23.51 7.37 40.66 6.53
249 749 4.240103 CTCATGGATCGGCCGCCA 62.240 66.667 24.19 24.19 40.66 5.69
280 780 6.999956 ATCGAATTGACAACATAGAGATCG 57.000 37.500 0.00 0.00 0.00 3.69
284 784 6.292542 CGAATTGACAACATAGAGATCGCATT 60.293 38.462 0.00 0.00 0.00 3.56
287 787 4.141959 TGACAACATAGAGATCGCATTCCA 60.142 41.667 0.00 0.00 0.00 3.53
294 794 1.153449 GATCGCATTCCACGGACCA 60.153 57.895 0.00 0.00 0.00 4.02
301 801 0.620410 ATTCCACGGACCATGGGAGA 60.620 55.000 18.09 0.01 37.85 3.71
319 819 2.038295 GAGACCCTCATGATCACATCCC 59.962 54.545 0.00 0.00 34.15 3.85
320 820 1.770658 GACCCTCATGATCACATCCCA 59.229 52.381 0.00 0.00 34.15 4.37
326 826 0.700269 ATGATCACATCCCAGGCCCT 60.700 55.000 0.00 0.00 29.98 5.19
333 833 0.399454 CATCCCAGGCCCTGATAGTG 59.601 60.000 13.74 1.64 32.44 2.74
336 836 0.769776 CCCAGGCCCTGATAGTGGAT 60.770 60.000 13.74 0.00 32.44 3.41
337 837 0.689623 CCAGGCCCTGATAGTGGATC 59.310 60.000 13.74 0.00 32.44 3.36
339 839 0.833834 AGGCCCTGATAGTGGATCCG 60.834 60.000 7.39 0.00 33.07 4.18
347 847 2.205074 GATAGTGGATCCGCACAACTG 58.795 52.381 26.71 0.00 0.00 3.16
353 853 2.498078 TGGATCCGCACAACTGTATGTA 59.502 45.455 7.39 0.00 30.84 2.29
367 867 5.212934 ACTGTATGTATCTTCGTATGTGCG 58.787 41.667 0.00 0.00 0.00 5.34
376 876 0.741915 TCGTATGTGCGTCATAGCCA 59.258 50.000 2.35 0.00 39.36 4.75
388 888 2.436173 GTCATAGCCAAGCCCTAGACTT 59.564 50.000 0.00 0.00 0.00 3.01
394 894 3.643792 AGCCAAGCCCTAGACTTACATAG 59.356 47.826 0.00 0.00 0.00 2.23
399 899 4.216708 AGCCCTAGACTTACATAGTGTCC 58.783 47.826 0.00 0.00 37.17 4.02
403 903 5.067936 CCCTAGACTTACATAGTGTCCACTG 59.932 48.000 10.15 0.00 42.52 3.66
404 904 5.067936 CCTAGACTTACATAGTGTCCACTGG 59.932 48.000 10.15 5.03 42.52 4.00
410 911 7.231467 ACTTACATAGTGTCCACTGGAAAATT 58.769 34.615 10.15 0.00 42.52 1.82
411 912 5.964958 ACATAGTGTCCACTGGAAAATTG 57.035 39.130 10.15 0.00 42.52 2.32
423 924 2.041891 TGGAAAATTGTCCCGGTACCAT 59.958 45.455 12.37 0.00 36.80 3.55
427 928 1.580059 ATTGTCCCGGTACCATGACT 58.420 50.000 23.83 8.77 0.00 3.41
429 930 0.611200 TGTCCCGGTACCATGACTTG 59.389 55.000 23.83 3.57 0.00 3.16
434 935 2.346803 CCGGTACCATGACTTGTTCTG 58.653 52.381 13.54 0.00 0.00 3.02
436 937 2.711542 GGTACCATGACTTGTTCTGGG 58.288 52.381 7.15 0.00 32.89 4.45
449 950 2.608988 CTGGGGCTCTGGGAGTGT 60.609 66.667 0.00 0.00 31.39 3.55
489 990 2.352651 CGGGTTGCACAGATAGTTGATG 59.647 50.000 0.00 0.00 0.00 3.07
490 991 2.098117 GGGTTGCACAGATAGTTGATGC 59.902 50.000 0.00 0.00 36.81 3.91
491 992 2.223112 GGTTGCACAGATAGTTGATGCG 60.223 50.000 0.00 0.00 39.18 4.73
495 996 2.222886 GCACAGATAGTTGATGCGTGTG 60.223 50.000 0.00 0.00 37.47 3.82
497 998 1.328680 CAGATAGTTGATGCGTGTGCC 59.671 52.381 0.00 0.00 41.78 5.01
499 1000 0.108377 ATAGTTGATGCGTGTGCCGA 60.108 50.000 0.00 0.00 41.78 5.54
512 1013 1.668751 TGTGCCGAGTGTTTGAAAGAC 59.331 47.619 0.00 0.00 0.00 3.01
516 1017 0.111266 CGAGTGTTTGAAAGACGGCG 60.111 55.000 4.80 4.80 0.00 6.46
543 1044 3.991051 CACTCCGGTGTGGCGACT 61.991 66.667 25.56 0.00 38.54 4.18
570 1071 1.675219 CCTTTTGGCATTGGCAGCT 59.325 52.632 13.02 0.00 43.71 4.24
577 1078 0.390735 GGCATTGGCAGCTTTTGGAG 60.391 55.000 5.17 0.00 43.71 3.86
578 1079 0.604578 GCATTGGCAGCTTTTGGAGA 59.395 50.000 0.00 0.00 40.72 3.71
580 1081 2.548493 GCATTGGCAGCTTTTGGAGAAA 60.548 45.455 0.00 0.00 40.72 2.52
581 1082 3.323243 CATTGGCAGCTTTTGGAGAAAG 58.677 45.455 0.00 0.00 0.00 2.62
635 1136 2.447887 GCGACCAGACGTGCATCAG 61.448 63.158 0.00 0.00 35.59 2.90
636 1137 2.447887 CGACCAGACGTGCATCAGC 61.448 63.158 0.00 0.00 42.57 4.26
637 1138 2.433145 ACCAGACGTGCATCAGCG 60.433 61.111 0.00 0.00 46.23 5.18
638 1139 2.125952 CCAGACGTGCATCAGCGA 60.126 61.111 0.00 0.00 46.23 4.93
639 1140 1.520120 CCAGACGTGCATCAGCGAT 60.520 57.895 0.00 0.00 46.23 4.58
640 1141 1.086067 CCAGACGTGCATCAGCGATT 61.086 55.000 0.00 0.00 46.23 3.34
641 1142 0.299895 CAGACGTGCATCAGCGATTC 59.700 55.000 0.00 0.00 46.23 2.52
642 1143 0.108662 AGACGTGCATCAGCGATTCA 60.109 50.000 0.00 0.00 46.23 2.57
643 1144 0.299895 GACGTGCATCAGCGATTCAG 59.700 55.000 0.00 0.00 46.23 3.02
677 1178 2.413453 GGACGAGTGATGCAAGAAGAAC 59.587 50.000 0.00 0.00 0.00 3.01
748 1249 2.336478 CGTCTGAGGAGAGCGTGGT 61.336 63.158 0.00 0.00 0.00 4.16
824 1325 1.775869 CGAGGATGTCCATGATGACG 58.224 55.000 1.30 0.00 38.11 4.35
826 1327 2.293399 CGAGGATGTCCATGATGACGTA 59.707 50.000 1.30 0.00 38.11 3.57
851 1352 4.444081 ACGACGGGGAGGGAGGAG 62.444 72.222 0.00 0.00 0.00 3.69
855 1356 4.806339 CGGGGAGGGAGGAGCCTT 62.806 72.222 0.00 0.00 36.66 4.35
856 1357 2.286502 GGGGAGGGAGGAGCCTTT 60.287 66.667 0.00 0.00 36.66 3.11
859 1369 0.990818 GGGAGGGAGGAGCCTTTCAT 60.991 60.000 0.00 0.00 36.66 2.57
863 1373 0.106967 GGGAGGAGCCTTTCATGTCC 60.107 60.000 0.00 0.00 36.66 4.02
876 1386 0.457166 CATGTCCGTCGGCGAAGTTA 60.457 55.000 20.69 6.56 41.33 2.24
882 1392 1.469126 CGTCGGCGAAGTTACCATCG 61.469 60.000 12.92 3.38 41.33 3.84
883 1393 0.457337 GTCGGCGAAGTTACCATCGT 60.457 55.000 12.92 0.00 41.01 3.73
884 1394 0.457166 TCGGCGAAGTTACCATCGTG 60.457 55.000 7.35 4.03 41.01 4.35
885 1395 0.457166 CGGCGAAGTTACCATCGTGA 60.457 55.000 0.00 0.00 41.01 4.35
886 1396 1.801395 CGGCGAAGTTACCATCGTGAT 60.801 52.381 0.00 0.00 41.01 3.06
888 1398 2.676342 GGCGAAGTTACCATCGTGATTT 59.324 45.455 9.31 0.00 41.01 2.17
898 1495 0.104120 ATCGTGATTTGGCCGATCGA 59.896 50.000 18.66 11.68 36.68 3.59
899 1496 0.104120 TCGTGATTTGGCCGATCGAT 59.896 50.000 18.66 0.00 0.00 3.59
1030 1643 3.119291 CAGAAGGAACGAATCGGATCTG 58.881 50.000 7.80 8.94 0.00 2.90
1031 1644 3.024547 AGAAGGAACGAATCGGATCTGA 58.975 45.455 6.72 6.72 0.00 3.27
1033 1646 2.379972 AGGAACGAATCGGATCTGAGT 58.620 47.619 10.61 7.38 0.00 3.41
1055 1668 6.637657 AGTAGTATTCGGTAGGAAAACAAGG 58.362 40.000 0.00 0.00 38.36 3.61
1056 1669 4.840271 AGTATTCGGTAGGAAAACAAGGG 58.160 43.478 0.00 0.00 38.36 3.95
1057 1670 4.533311 AGTATTCGGTAGGAAAACAAGGGA 59.467 41.667 0.00 0.00 38.36 4.20
1215 1833 1.639722 TCCGAAAGATGGACCTGTCA 58.360 50.000 0.00 0.00 0.00 3.58
1221 1839 1.866015 AGATGGACCTGTCATCGGAA 58.134 50.000 0.00 0.00 44.04 4.30
1366 1984 2.825836 GCGGCACCAAGATCCTGG 60.826 66.667 8.93 8.93 42.68 4.45
1407 2025 4.675029 CACGCCGTCCCCGTCTTT 62.675 66.667 0.00 0.00 36.69 2.52
1678 2988 2.089349 GCTCTTCGTCAGCACCGTC 61.089 63.158 0.00 0.00 36.82 4.79
1680 2990 0.318699 CTCTTCGTCAGCACCGTCAA 60.319 55.000 0.00 0.00 0.00 3.18
1858 3168 4.154347 GGCCACCTCTGCTCCTCG 62.154 72.222 0.00 0.00 0.00 4.63
1899 3242 0.179089 GACGATGCTGGCAGTGAGAT 60.179 55.000 17.16 3.35 0.00 2.75
1936 3336 2.419324 GCTCAGCAAGGAGAAGATGTTG 59.581 50.000 0.00 0.00 37.05 3.33
2034 3434 4.272018 GCAGTGCTTCTCTATTGTGTATGG 59.728 45.833 8.18 0.00 0.00 2.74
2051 3451 0.249573 TGGTGAAAAGGACGACGACC 60.250 55.000 8.37 8.37 0.00 4.79
2120 3520 0.524862 GAGCGACCGTTACAAGGAGA 59.475 55.000 0.00 0.00 0.00 3.71
2164 3564 2.588314 CGCCATCTGCTCCAGCTC 60.588 66.667 0.00 0.00 42.66 4.09
2183 3583 3.629398 GCTCATAACATTCACCCTCAAGG 59.371 47.826 0.00 0.00 43.78 3.61
2251 3651 1.488957 CTTCGAGTTGCTGCGTCAC 59.511 57.895 0.00 0.00 0.00 3.67
2399 3831 2.704065 TCCTTGATATTCCCTCCGTTCC 59.296 50.000 0.00 0.00 0.00 3.62
2446 3878 0.606944 GGTATGAAACCGTGGGTGCA 60.607 55.000 0.00 0.00 38.88 4.57
2475 4364 7.514784 TTGAATATTGATTTGAGATCGGCAT 57.485 32.000 0.00 0.00 0.00 4.40
2493 4382 4.497006 CGGCATGTGAAAGAAAGATGGATC 60.497 45.833 0.00 0.00 0.00 3.36
2498 4387 7.478322 CATGTGAAAGAAAGATGGATCGATTT 58.522 34.615 0.00 0.00 0.00 2.17
2499 4388 7.076842 TGTGAAAGAAAGATGGATCGATTTC 57.923 36.000 0.00 0.00 32.95 2.17
2500 4389 6.654582 TGTGAAAGAAAGATGGATCGATTTCA 59.345 34.615 0.00 1.83 34.77 2.69
2501 4390 7.337689 TGTGAAAGAAAGATGGATCGATTTCAT 59.662 33.333 12.90 12.90 37.63 2.57
2511 7096 9.948964 AGATGGATCGATTTCATATGTCATAAA 57.051 29.630 12.98 0.00 0.00 1.40
2553 7138 7.844493 ACCAGGATGTAATAATTCATGCATT 57.156 32.000 0.00 0.00 35.42 3.56
2615 7200 5.000591 TGAAGTTTTTGCACGGATCTCATA 58.999 37.500 0.00 0.00 0.00 2.15
2618 7203 1.953559 TTTGCACGGATCTCATAGCC 58.046 50.000 0.00 0.00 0.00 3.93
2634 7219 4.281688 TCATAGCCAGATCAACGATCATCA 59.718 41.667 6.74 0.00 41.12 3.07
2644 7229 3.066380 CAACGATCATCAGTGTCAACCA 58.934 45.455 0.00 0.00 0.00 3.67
2704 7289 8.465201 TGAAGCATATTATTTGTGTACATTGCA 58.535 29.630 0.00 0.00 0.00 4.08
2705 7290 8.861033 AAGCATATTATTTGTGTACATTGCAG 57.139 30.769 0.00 0.00 0.00 4.41
2749 7990 2.572209 TCCCTAAAACAACTTCCCCG 57.428 50.000 0.00 0.00 0.00 5.73
2874 8116 1.664965 GGAAGAGCTCAACGCACGT 60.665 57.895 17.77 0.00 42.61 4.49
2887 8129 2.805353 CACGTCACGGGCTCTTCG 60.805 66.667 0.35 0.00 0.00 3.79
2889 8131 2.504244 CGTCACGGGCTCTTCGAC 60.504 66.667 0.00 0.00 0.00 4.20
2946 8188 1.888512 TCCAAGAACAATCAAGCTGCC 59.111 47.619 0.00 0.00 0.00 4.85
2950 8192 1.353694 AGAACAATCAAGCTGCCTCCT 59.646 47.619 0.00 0.00 0.00 3.69
2956 8198 2.530151 AAGCTGCCTCCTGTCCCA 60.530 61.111 0.00 0.00 0.00 4.37
2989 8242 2.047061 CCCCCTTCGTCCATCTTGATA 58.953 52.381 0.00 0.00 0.00 2.15
3017 8270 4.314121 AGAGACTGTTCACAAATGAGCTC 58.686 43.478 6.82 6.82 37.01 4.09
3035 8288 0.321564 TCGATGTGGGCCTCAAACTG 60.322 55.000 12.93 3.20 0.00 3.16
3058 8311 3.229293 TCATCATCAACAAAGGCAACCA 58.771 40.909 0.00 0.00 37.17 3.67
3060 8313 3.663995 TCATCAACAAAGGCAACCATG 57.336 42.857 0.00 0.00 37.17 3.66
3066 8319 3.389925 ACAAAGGCAACCATGAACATG 57.610 42.857 7.70 7.70 38.51 3.21
3136 8389 4.811557 ACTGTACTGAAAACAGAGAAGCAC 59.188 41.667 10.02 0.00 45.89 4.40
3142 8395 1.772182 AAACAGAGAAGCACGACTCG 58.228 50.000 0.00 0.00 38.08 4.18
3145 8398 1.542030 ACAGAGAAGCACGACTCGAAT 59.458 47.619 5.20 0.00 38.08 3.34
3146 8399 2.029828 ACAGAGAAGCACGACTCGAATT 60.030 45.455 5.20 0.00 38.08 2.17
3148 8401 2.029828 AGAGAAGCACGACTCGAATTGT 60.030 45.455 5.20 0.00 38.08 2.71
3150 8403 2.731976 AGAAGCACGACTCGAATTGTTC 59.268 45.455 5.20 1.36 0.00 3.18
3164 8432 8.846211 ACTCGAATTGTTCTTTTTCCTGATTAA 58.154 29.630 0.00 0.00 0.00 1.40
3213 8482 8.737168 TCAAGCTTATATAACTGCAAATGAGT 57.263 30.769 0.00 0.00 0.00 3.41
3222 8491 4.032960 ACTGCAAATGAGTGAATACCCA 57.967 40.909 0.00 0.00 0.00 4.51
3237 8506 5.071653 TGAATACCCAGCATCTGCATTACTA 59.928 40.000 4.79 0.00 45.16 1.82
3238 8507 3.199880 ACCCAGCATCTGCATTACTAC 57.800 47.619 4.79 0.00 45.16 2.73
3239 8508 2.774234 ACCCAGCATCTGCATTACTACT 59.226 45.455 4.79 0.00 45.16 2.57
3240 8509 3.967326 ACCCAGCATCTGCATTACTACTA 59.033 43.478 4.79 0.00 45.16 1.82
3277 8546 6.616260 GCACACAATCAAAATTGGAACGAATC 60.616 38.462 0.00 0.00 45.48 2.52
3281 8550 5.582689 ATCAAAATTGGAACGAATCTCCC 57.417 39.130 0.00 0.00 31.32 4.30
3311 8580 2.183555 CGGGCCACGGTCTACTTC 59.816 66.667 4.39 0.00 39.42 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.945134 ACACTTATGCTTCATTTCCCATAATC 58.055 34.615 0.00 0.00 31.87 1.75
4 5 7.902920 ACACTTATGCTTCATTTCCCATAAT 57.097 32.000 0.00 0.00 31.87 1.28
5 6 7.363705 CCAACACTTATGCTTCATTTCCCATAA 60.364 37.037 0.00 0.00 0.00 1.90
15 16 3.325870 CTCGACCAACACTTATGCTTCA 58.674 45.455 0.00 0.00 0.00 3.02
28 29 1.939934 CAGTTGACAAAGCTCGACCAA 59.060 47.619 0.00 0.00 0.00 3.67
30 31 0.868406 CCAGTTGACAAAGCTCGACC 59.132 55.000 0.00 0.00 0.00 4.79
31 32 1.261619 CACCAGTTGACAAAGCTCGAC 59.738 52.381 0.00 0.00 0.00 4.20
46 47 3.074412 GGACAAGGACATACAACACCAG 58.926 50.000 0.00 0.00 0.00 4.00
79 92 1.966451 GTTTGGGACTCTGCCACCG 60.966 63.158 0.00 0.00 37.69 4.94
94 107 1.816835 TCTCTCGCTGACCATACGTTT 59.183 47.619 0.00 0.00 0.00 3.60
97 110 1.300481 TCTCTCTCGCTGACCATACG 58.700 55.000 0.00 0.00 0.00 3.06
103 116 4.560136 TGTATCATTCTCTCTCGCTGAC 57.440 45.455 0.00 0.00 0.00 3.51
105 118 5.401972 GTCATTGTATCATTCTCTCTCGCTG 59.598 44.000 0.00 0.00 0.00 5.18
143 156 3.063997 GCCGAACAGAAAATCGACATCAT 59.936 43.478 0.00 0.00 41.43 2.45
150 163 2.739913 TGGTTAGCCGAACAGAAAATCG 59.260 45.455 1.88 0.00 40.09 3.34
158 171 5.676552 ACACATATATTGGTTAGCCGAACA 58.323 37.500 1.88 0.00 40.09 3.18
160 173 5.071250 AGGACACATATATTGGTTAGCCGAA 59.929 40.000 0.00 0.00 37.67 4.30
196 209 2.433436 GTAAAACCTGATCGGCCAAGT 58.567 47.619 2.24 0.00 35.61 3.16
199 212 0.034863 GGGTAAAACCTGATCGGCCA 60.035 55.000 2.24 0.00 38.64 5.36
201 214 1.743394 CTTGGGTAAAACCTGATCGGC 59.257 52.381 0.00 0.00 38.64 5.54
203 216 1.743394 GGCTTGGGTAAAACCTGATCG 59.257 52.381 0.00 0.00 38.64 3.69
204 217 1.743394 CGGCTTGGGTAAAACCTGATC 59.257 52.381 0.00 0.00 38.64 2.92
206 219 0.250989 CCGGCTTGGGTAAAACCTGA 60.251 55.000 0.00 0.00 38.64 3.86
207 220 1.873270 GCCGGCTTGGGTAAAACCTG 61.873 60.000 22.15 0.00 38.64 4.00
223 720 3.873026 GATCCATGAGAGGCCGCCG 62.873 68.421 1.49 0.00 0.00 6.46
230 727 2.356793 GCGGCCGATCCATGAGAG 60.357 66.667 33.48 0.00 34.01 3.20
233 730 4.240103 CTGGCGGCCGATCCATGA 62.240 66.667 33.48 4.62 34.01 3.07
246 746 2.774799 AATTCGATTGGGCGCTGGC 61.775 57.895 7.64 0.00 38.90 4.85
247 747 1.064621 CAATTCGATTGGGCGCTGG 59.935 57.895 7.64 0.00 36.63 4.85
249 749 0.676466 TGTCAATTCGATTGGGCGCT 60.676 50.000 7.64 0.00 40.61 5.92
252 752 3.508744 ATGTTGTCAATTCGATTGGGC 57.491 42.857 7.45 0.00 40.61 5.36
253 753 5.817296 TCTCTATGTTGTCAATTCGATTGGG 59.183 40.000 7.45 0.00 40.61 4.12
254 754 6.908870 TCTCTATGTTGTCAATTCGATTGG 57.091 37.500 7.45 0.00 40.61 3.16
255 755 7.279342 CGATCTCTATGTTGTCAATTCGATTG 58.721 38.462 0.00 0.00 41.57 2.67
256 756 6.074088 GCGATCTCTATGTTGTCAATTCGATT 60.074 38.462 0.00 0.00 0.00 3.34
257 757 5.403766 GCGATCTCTATGTTGTCAATTCGAT 59.596 40.000 0.00 0.00 0.00 3.59
258 758 4.740205 GCGATCTCTATGTTGTCAATTCGA 59.260 41.667 0.00 0.00 0.00 3.71
259 759 4.504097 TGCGATCTCTATGTTGTCAATTCG 59.496 41.667 0.00 0.00 0.00 3.34
280 780 2.120909 CCCATGGTCCGTGGAATGC 61.121 63.158 29.15 0.00 42.73 3.56
284 784 1.987855 GTCTCCCATGGTCCGTGGA 60.988 63.158 29.15 15.04 42.73 4.02
287 787 2.687566 GGGTCTCCCATGGTCCGT 60.688 66.667 11.73 0.00 44.65 4.69
294 794 3.957950 ATGTGATCATGAGGGTCTCCCAT 60.958 47.826 0.00 0.00 38.38 4.00
301 801 1.773052 CTGGGATGTGATCATGAGGGT 59.227 52.381 0.00 0.00 34.06 4.34
307 807 0.700269 AGGGCCTGGGATGTGATCAT 60.700 55.000 4.50 0.00 36.95 2.45
308 808 1.308128 AGGGCCTGGGATGTGATCA 60.308 57.895 4.50 0.00 0.00 2.92
309 809 1.150081 CAGGGCCTGGGATGTGATC 59.850 63.158 26.34 0.00 0.00 2.92
319 819 0.689623 GGATCCACTATCAGGGCCTG 59.310 60.000 28.01 28.01 36.20 4.85
320 820 0.833834 CGGATCCACTATCAGGGCCT 60.834 60.000 13.41 0.00 36.20 5.19
326 826 1.831106 AGTTGTGCGGATCCACTATCA 59.169 47.619 13.41 0.95 36.20 2.15
333 833 2.024176 ACATACAGTTGTGCGGATCC 57.976 50.000 0.00 0.00 0.00 3.36
336 836 4.430007 GAAGATACATACAGTTGTGCGGA 58.570 43.478 0.00 0.00 0.00 5.54
337 837 3.242944 CGAAGATACATACAGTTGTGCGG 59.757 47.826 0.00 0.00 0.00 5.69
339 839 6.475727 ACATACGAAGATACATACAGTTGTGC 59.524 38.462 0.00 0.00 0.00 4.57
347 847 5.209977 TGACGCACATACGAAGATACATAC 58.790 41.667 0.00 0.00 36.70 2.39
353 853 3.309388 GCTATGACGCACATACGAAGAT 58.691 45.455 0.00 0.00 40.07 2.40
367 867 2.043227 AGTCTAGGGCTTGGCTATGAC 58.957 52.381 0.00 0.00 0.00 3.06
376 876 4.650131 GGACACTATGTAAGTCTAGGGCTT 59.350 45.833 5.93 5.93 35.76 4.35
388 888 6.539173 ACAATTTTCCAGTGGACACTATGTA 58.461 36.000 12.69 0.00 40.20 2.29
394 894 2.296190 GGGACAATTTTCCAGTGGACAC 59.704 50.000 12.69 0.00 37.40 3.67
399 899 1.616159 ACCGGGACAATTTTCCAGTG 58.384 50.000 12.62 5.57 37.40 3.66
403 903 2.203470 TGGTACCGGGACAATTTTCC 57.797 50.000 21.02 1.69 34.52 3.13
404 904 3.128068 GTCATGGTACCGGGACAATTTTC 59.872 47.826 21.02 0.00 0.00 2.29
410 911 0.611200 CAAGTCATGGTACCGGGACA 59.389 55.000 27.67 8.43 32.79 4.02
411 912 0.611714 ACAAGTCATGGTACCGGGAC 59.388 55.000 21.91 21.91 0.00 4.46
423 924 0.397941 CAGAGCCCCAGAACAAGTCA 59.602 55.000 0.00 0.00 0.00 3.41
427 928 1.463214 TCCCAGAGCCCCAGAACAA 60.463 57.895 0.00 0.00 0.00 2.83
429 930 1.920835 ACTCCCAGAGCCCCAGAAC 60.921 63.158 0.00 0.00 32.04 3.01
434 935 3.775654 CGACACTCCCAGAGCCCC 61.776 72.222 0.00 0.00 32.04 5.80
436 937 4.459089 GGCGACACTCCCAGAGCC 62.459 72.222 0.00 0.00 37.61 4.70
449 950 0.037326 GTCAACTGGTCAGATGGCGA 60.037 55.000 4.84 0.00 32.79 5.54
489 990 2.042520 TTCAAACACTCGGCACACGC 62.043 55.000 0.00 0.00 43.86 5.34
490 991 0.375454 TTTCAAACACTCGGCACACG 59.625 50.000 0.00 0.00 46.11 4.49
491 992 1.668751 TCTTTCAAACACTCGGCACAC 59.331 47.619 0.00 0.00 0.00 3.82
495 996 0.234884 CCGTCTTTCAAACACTCGGC 59.765 55.000 0.00 0.00 0.00 5.54
497 998 0.111266 CGCCGTCTTTCAAACACTCG 60.111 55.000 0.00 0.00 0.00 4.18
499 1000 1.217882 CTCGCCGTCTTTCAAACACT 58.782 50.000 0.00 0.00 0.00 3.55
516 1017 4.864334 CCGGAGTGCCATGGCCTC 62.864 72.222 31.58 31.58 41.09 4.70
531 1032 1.800315 CTTACGAGTCGCCACACCG 60.800 63.158 13.59 0.00 0.00 4.94
532 1033 1.445582 CCTTACGAGTCGCCACACC 60.446 63.158 13.59 0.00 0.00 4.16
542 1043 0.608035 TGCCAAAAGGCCCTTACGAG 60.608 55.000 0.00 0.00 0.00 4.18
543 1044 0.039035 ATGCCAAAAGGCCCTTACGA 59.961 50.000 0.00 0.00 0.00 3.43
570 1071 3.025322 TCCACCTTGCTTTCTCCAAAA 57.975 42.857 0.00 0.00 0.00 2.44
577 1078 0.244721 GCACCATCCACCTTGCTTTC 59.755 55.000 0.00 0.00 32.00 2.62
578 1079 0.469705 TGCACCATCCACCTTGCTTT 60.470 50.000 0.00 0.00 35.91 3.51
580 1081 1.604593 GTGCACCATCCACCTTGCT 60.605 57.895 5.22 0.00 35.91 3.91
581 1082 2.964978 GTGCACCATCCACCTTGC 59.035 61.111 5.22 0.00 35.45 4.01
588 1089 1.451387 CCCTAACGGTGCACCATCC 60.451 63.158 34.16 8.99 35.14 3.51
607 1108 2.031012 CTGGTCGCAGCAGGACAA 59.969 61.111 7.27 0.00 39.87 3.18
635 1136 3.255379 GACGGACCGCTGAATCGC 61.255 66.667 15.39 0.00 0.00 4.58
636 1137 2.949678 CGACGGACCGCTGAATCG 60.950 66.667 15.39 11.73 0.00 3.34
734 1235 3.695606 GCCACCACGCTCTCCTCA 61.696 66.667 0.00 0.00 0.00 3.86
785 1286 4.341502 CGGTTGCCGGCCAAGTTG 62.342 66.667 26.77 4.91 44.15 3.16
806 1307 2.898729 ACGTCATCATGGACATCCTC 57.101 50.000 0.00 0.00 37.66 3.71
808 1309 3.643763 GACTACGTCATCATGGACATCC 58.356 50.000 0.00 0.00 37.66 3.51
809 1310 3.300857 CGACTACGTCATCATGGACATC 58.699 50.000 0.00 0.00 37.66 3.06
838 1339 4.806339 AAGGCTCCTCCCTCCCCG 62.806 72.222 0.00 0.00 32.93 5.73
843 1344 0.915364 GACATGAAAGGCTCCTCCCT 59.085 55.000 0.00 0.00 36.58 4.20
844 1345 0.106967 GGACATGAAAGGCTCCTCCC 60.107 60.000 0.00 0.00 34.51 4.30
845 1346 0.462759 CGGACATGAAAGGCTCCTCC 60.463 60.000 0.00 0.00 0.00 4.30
847 1348 0.250513 GACGGACATGAAAGGCTCCT 59.749 55.000 0.00 0.00 0.00 3.69
848 1349 1.084370 CGACGGACATGAAAGGCTCC 61.084 60.000 0.00 0.00 0.00 4.70
849 1350 1.084370 CCGACGGACATGAAAGGCTC 61.084 60.000 8.64 0.00 0.00 4.70
851 1352 2.750888 GCCGACGGACATGAAAGGC 61.751 63.158 20.50 1.62 36.08 4.35
852 1353 2.452813 CGCCGACGGACATGAAAGG 61.453 63.158 20.50 0.00 34.97 3.11
854 1355 1.005984 TTCGCCGACGGACATGAAA 60.006 52.632 20.50 0.00 40.63 2.69
855 1356 1.445410 CTTCGCCGACGGACATGAA 60.445 57.895 20.50 13.72 40.63 2.57
856 1357 2.149803 AACTTCGCCGACGGACATGA 62.150 55.000 20.50 6.26 40.63 3.07
859 1369 1.081242 GTAACTTCGCCGACGGACA 60.081 57.895 20.50 0.00 40.63 4.02
863 1373 2.285154 GATGGTAACTTCGCCGACG 58.715 57.895 0.00 0.00 38.04 5.12
876 1386 0.107214 ATCGGCCAAATCACGATGGT 60.107 50.000 2.24 0.00 44.66 3.55
882 1392 2.416547 CCATATCGATCGGCCAAATCAC 59.583 50.000 16.41 0.00 0.00 3.06
883 1393 2.301583 TCCATATCGATCGGCCAAATCA 59.698 45.455 16.41 0.00 0.00 2.57
884 1394 2.972625 TCCATATCGATCGGCCAAATC 58.027 47.619 16.41 4.10 0.00 2.17
885 1395 3.198635 AGATCCATATCGATCGGCCAAAT 59.801 43.478 16.41 3.22 42.94 2.32
886 1396 2.567169 AGATCCATATCGATCGGCCAAA 59.433 45.455 16.41 0.00 42.94 3.28
888 1398 1.852633 AGATCCATATCGATCGGCCA 58.147 50.000 16.41 0.66 42.94 5.36
899 1496 9.822185 CACGATCCATCATTAAATAGATCCATA 57.178 33.333 0.00 0.00 0.00 2.74
921 1518 1.228094 TGCCATCCAGCAAACACGA 60.228 52.632 0.00 0.00 40.56 4.35
922 1519 1.210931 CTGCCATCCAGCAAACACG 59.789 57.895 0.00 0.00 43.52 4.49
967 1565 4.509970 TCCTTGTATAAAACGATCCGCATG 59.490 41.667 0.00 0.00 0.00 4.06
1030 1643 6.755607 CCTTGTTTTCCTACCGAATACTACTC 59.244 42.308 0.00 0.00 34.54 2.59
1031 1644 6.351626 CCCTTGTTTTCCTACCGAATACTACT 60.352 42.308 0.00 0.00 34.54 2.57
1033 1646 5.721000 TCCCTTGTTTTCCTACCGAATACTA 59.279 40.000 0.00 0.00 34.54 1.82
1055 1668 1.673329 GGTGTTTCTCCTCTTCGCTCC 60.673 57.143 0.00 0.00 0.00 4.70
1056 1669 1.000955 TGGTGTTTCTCCTCTTCGCTC 59.999 52.381 0.00 0.00 0.00 5.03
1057 1670 1.001406 CTGGTGTTTCTCCTCTTCGCT 59.999 52.381 0.00 0.00 0.00 4.93
1221 1839 1.746727 CGTCGTCGTCGGACTCGTAT 61.747 60.000 17.13 0.00 41.16 3.06
1407 2025 4.700365 CTCCGCGAGTGCACGTCA 62.700 66.667 8.23 0.00 42.97 4.35
1888 3231 4.783621 GGCGCCATCTCACTGCCA 62.784 66.667 24.80 0.00 45.06 4.92
2034 3434 0.857287 GTGGTCGTCGTCCTTTTCAC 59.143 55.000 9.90 0.00 0.00 3.18
2094 3494 1.737735 TAACGGTCGCTCTCGTCGA 60.738 57.895 0.00 0.00 38.78 4.20
2109 3509 4.938226 CCTCATTCACCTTCTCCTTGTAAC 59.062 45.833 0.00 0.00 0.00 2.50
2120 3520 3.519913 GGTAGGTTCTCCTCATTCACCTT 59.480 47.826 0.00 0.00 43.94 3.50
2183 3583 4.999950 AGTCAGTTGTCCATTCTTGTCATC 59.000 41.667 0.00 0.00 0.00 2.92
2251 3651 0.580578 CATCAAAGAGCGGATCAGCG 59.419 55.000 12.29 0.00 43.00 5.18
2386 3786 7.513091 AGACTTATATTTAGGAACGGAGGGAAT 59.487 37.037 0.00 0.00 0.00 3.01
2387 3787 6.842807 AGACTTATATTTAGGAACGGAGGGAA 59.157 38.462 0.00 0.00 0.00 3.97
2427 3859 0.606944 TGCACCCACGGTTTCATACC 60.607 55.000 0.00 0.00 44.03 2.73
2430 3862 0.887933 GAATGCACCCACGGTTTCAT 59.112 50.000 0.00 0.00 31.02 2.57
2435 3867 0.179004 TCAAAGAATGCACCCACGGT 60.179 50.000 0.00 0.00 35.62 4.83
2438 3870 5.964758 TCAATATTCAAAGAATGCACCCAC 58.035 37.500 0.00 0.00 0.00 4.61
2471 4360 4.497006 CGATCCATCTTTCTTTCACATGCC 60.497 45.833 0.00 0.00 0.00 4.40
2475 4364 6.654582 TGAAATCGATCCATCTTTCTTTCACA 59.345 34.615 0.00 0.00 0.00 3.58
2529 7114 7.844493 AATGCATGAATTATTACATCCTGGT 57.156 32.000 0.00 0.00 0.00 4.00
2615 7200 2.433604 ACTGATGATCGTTGATCTGGCT 59.566 45.455 8.16 0.00 39.56 4.75
2618 7203 4.427312 TGACACTGATGATCGTTGATCTG 58.573 43.478 8.16 0.99 39.56 2.90
2634 7219 7.765695 AATTATTCACATCTTGGTTGACACT 57.234 32.000 0.00 0.00 0.00 3.55
2679 7264 8.854979 TGCAATGTACACAAATAATATGCTTC 57.145 30.769 0.00 0.00 0.00 3.86
2682 7267 8.633075 AACTGCAATGTACACAAATAATATGC 57.367 30.769 0.00 0.00 0.00 3.14
2723 7308 6.495872 GGGGAAGTTGTTTTAGGGAAGTAATT 59.504 38.462 0.00 0.00 0.00 1.40
2768 8010 6.041637 GGATCATTTGGATTAGGTTTAACCCC 59.958 42.308 10.93 5.38 35.97 4.95
2769 8011 6.839134 AGGATCATTTGGATTAGGTTTAACCC 59.161 38.462 10.93 0.00 35.97 4.11
2874 8116 2.974489 GACGTCGAAGAGCCCGTGA 61.974 63.158 5.05 0.00 36.95 4.35
2946 8188 1.002868 CAAGCCAGTGGGACAGGAG 60.003 63.158 12.15 0.00 41.80 3.69
2950 8192 0.465460 GACAACAAGCCAGTGGGACA 60.465 55.000 12.15 0.00 35.59 4.02
2956 8198 1.655114 AAGGGGGACAACAAGCCAGT 61.655 55.000 0.00 0.00 0.00 4.00
2989 8242 4.487714 TTTGTGAACAGTCTCTTCAGGT 57.512 40.909 0.00 0.00 0.00 4.00
3017 8270 0.606401 ACAGTTTGAGGCCCACATCG 60.606 55.000 0.00 0.00 0.00 3.84
3035 8288 3.989817 GGTTGCCTTTGTTGATGATGAAC 59.010 43.478 0.00 0.00 0.00 3.18
3058 8311 2.494471 CCATGCACTGTTCCATGTTCAT 59.506 45.455 13.82 0.00 37.67 2.57
3060 8313 1.403249 GCCATGCACTGTTCCATGTTC 60.403 52.381 13.82 5.36 37.67 3.18
3095 8348 2.431260 GCCACATTGCCAACTGCG 60.431 61.111 0.00 0.00 45.60 5.18
3106 8359 3.550820 TGTTTTCAGTACAGTGCCACAT 58.449 40.909 0.00 0.00 0.00 3.21
3128 8381 2.329379 ACAATTCGAGTCGTGCTTCTC 58.671 47.619 13.12 0.00 0.00 2.87
3136 8389 5.050363 TCAGGAAAAAGAACAATTCGAGTCG 60.050 40.000 6.09 6.09 34.02 4.18
3203 8472 2.754552 GCTGGGTATTCACTCATTTGCA 59.245 45.455 0.00 0.00 33.65 4.08
3213 8482 3.301794 AATGCAGATGCTGGGTATTCA 57.698 42.857 6.35 0.00 42.66 2.57
3222 8491 6.015095 TGCTATGTAGTAGTAATGCAGATGCT 60.015 38.462 6.35 0.00 35.96 3.79
3237 8506 5.703978 TTGTGTGCATTTTGCTATGTAGT 57.296 34.783 0.00 0.00 45.31 2.73
3238 8507 6.324042 TGATTGTGTGCATTTTGCTATGTAG 58.676 36.000 0.00 0.00 45.31 2.74
3239 8508 6.264841 TGATTGTGTGCATTTTGCTATGTA 57.735 33.333 0.00 0.00 45.31 2.29
3240 8509 5.136816 TGATTGTGTGCATTTTGCTATGT 57.863 34.783 0.00 0.00 45.31 2.29
3258 8527 5.393027 CGGGAGATTCGTTCCAATTTTGATT 60.393 40.000 0.00 0.00 36.40 2.57
3302 8571 3.057734 CAAACGGACACTGAAGTAGACC 58.942 50.000 0.00 0.00 0.00 3.85
3303 8572 2.475487 GCAAACGGACACTGAAGTAGAC 59.525 50.000 0.00 0.00 0.00 2.59
3311 8580 0.878523 TCCTTCGCAAACGGACACTG 60.879 55.000 0.00 0.00 40.63 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.