Multiple sequence alignment - TraesCS5A01G418600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G418600 chr5A 100.000 2775 0 0 1 2775 606525205 606527979 0.000000e+00 5125.0
1 TraesCS5A01G418600 chr5A 85.939 1017 69 32 957 1958 606460719 606461676 0.000000e+00 1018.0
2 TraesCS5A01G418600 chr5A 85.020 741 72 19 2025 2736 606461675 606462405 0.000000e+00 717.0
3 TraesCS5A01G418600 chr5A 78.131 503 77 19 1087 1559 606306986 606307485 3.500000e-74 289.0
4 TraesCS5A01G418600 chr5A 93.197 147 10 0 664 810 606460558 606460704 1.670000e-52 217.0
5 TraesCS5A01G418600 chr5A 92.742 124 7 2 370 492 606460050 606460172 7.900000e-41 178.0
6 TraesCS5A01G418600 chr5A 93.396 106 3 4 390 492 606486636 606486740 1.330000e-33 154.0
7 TraesCS5A01G418600 chr5A 77.340 203 32 10 808 1003 606306740 606306935 1.050000e-19 108.0
8 TraesCS5A01G418600 chr5D 89.462 1860 143 28 951 2775 485268063 485269904 0.000000e+00 2300.0
9 TraesCS5A01G418600 chr5D 94.138 1177 57 7 753 1925 485294140 485295308 0.000000e+00 1781.0
10 TraesCS5A01G418600 chr5D 88.902 847 59 8 664 1497 485266841 485267665 0.000000e+00 1011.0
11 TraesCS5A01G418600 chr5D 74.154 650 112 33 808 1437 484973762 484974375 4.650000e-53 219.0
12 TraesCS5A01G418600 chr5D 92.143 140 10 1 353 492 485163196 485163334 2.180000e-46 196.0
13 TraesCS5A01G418600 chr5B 88.075 1174 93 26 664 1812 596903856 596905007 0.000000e+00 1349.0
14 TraesCS5A01G418600 chr5B 91.950 323 14 5 519 838 596880339 596880652 2.540000e-120 442.0
15 TraesCS5A01G418600 chr5B 91.200 250 19 3 2016 2264 596905186 596905433 1.230000e-88 337.0
16 TraesCS5A01G418600 chr5B 77.886 615 73 25 1093 1662 596439068 596438472 9.590000e-85 324.0
17 TraesCS5A01G418600 chr5B 90.503 179 14 3 38 214 596901223 596901400 1.660000e-57 233.0
18 TraesCS5A01G418600 chr5B 92.157 51 4 0 1277 1327 596438731 596438681 3.830000e-09 73.1
19 TraesCS5A01G418600 chr5B 95.455 44 2 0 449 492 596901554 596901597 1.380000e-08 71.3
20 TraesCS5A01G418600 chr6A 89.516 124 8 4 2300 2421 582923881 582923761 4.790000e-33 152.0
21 TraesCS5A01G418600 chr3B 89.431 123 10 3 2300 2421 49677506 49677386 4.790000e-33 152.0
22 TraesCS5A01G418600 chr6B 89.256 121 11 2 2302 2421 534229398 534229279 1.720000e-32 150.0
23 TraesCS5A01G418600 chr1D 89.256 121 9 4 2300 2417 108102211 108102330 6.190000e-32 148.0
24 TraesCS5A01G418600 chr1D 81.609 87 12 4 252 334 50915208 50915294 4.960000e-08 69.4
25 TraesCS5A01G418600 chr1A 88.710 124 10 4 2297 2418 111124571 111124692 6.190000e-32 148.0
26 TraesCS5A01G418600 chr7B 88.000 125 11 4 2300 2421 548112877 548113000 8.010000e-31 145.0
27 TraesCS5A01G418600 chr6D 87.903 124 12 3 213 334 174403688 174403810 2.880000e-30 143.0
28 TraesCS5A01G418600 chr6D 80.682 88 11 6 252 334 123059412 123059326 2.310000e-06 63.9
29 TraesCS5A01G418600 chr3D 87.903 124 12 3 213 334 468635783 468635905 2.880000e-30 143.0
30 TraesCS5A01G418600 chr2D 87.805 123 10 5 2302 2421 590031415 590031535 3.730000e-29 139.0
31 TraesCS5A01G418600 chr2D 87.097 124 13 3 213 334 614638521 614638399 1.340000e-28 137.0
32 TraesCS5A01G418600 chr7A 86.777 121 14 2 2302 2421 439487520 439487401 1.730000e-27 134.0
33 TraesCS5A01G418600 chr1B 81.897 116 14 6 222 334 278705222 278705111 1.060000e-14 91.6
34 TraesCS5A01G418600 chr4B 87.302 63 5 3 275 334 561171038 561170976 4.960000e-08 69.4
35 TraesCS5A01G418600 chr4D 82.895 76 11 2 252 325 103256451 103256376 1.780000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G418600 chr5A 606525205 606527979 2774 False 5125.000 5125 100.00000 1 2775 1 chr5A.!!$F2 2774
1 TraesCS5A01G418600 chr5A 606460050 606462405 2355 False 532.500 1018 89.22450 370 2736 4 chr5A.!!$F4 2366
2 TraesCS5A01G418600 chr5D 485294140 485295308 1168 False 1781.000 1781 94.13800 753 1925 1 chr5D.!!$F3 1172
3 TraesCS5A01G418600 chr5D 485266841 485269904 3063 False 1655.500 2300 89.18200 664 2775 2 chr5D.!!$F4 2111
4 TraesCS5A01G418600 chr5D 484973762 484974375 613 False 219.000 219 74.15400 808 1437 1 chr5D.!!$F1 629
5 TraesCS5A01G418600 chr5B 596901223 596905433 4210 False 497.575 1349 91.30825 38 2264 4 chr5B.!!$F2 2226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 251 0.025001 CGACGCTTTCACTTATGCCG 59.975 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 5467 0.322997 CGCCCCACTCCATTGGTTAA 60.323 55.0 1.86 0.0 34.44 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.551388 GAGAATGTGGAGTATCGATCACC 58.449 47.826 0.00 4.82 34.37 4.02
23 24 3.004839 AGAATGTGGAGTATCGATCACCG 59.995 47.826 0.00 0.00 40.25 4.94
24 25 1.758936 TGTGGAGTATCGATCACCGT 58.241 50.000 0.00 0.00 39.75 4.83
25 26 2.921821 TGTGGAGTATCGATCACCGTA 58.078 47.619 0.00 0.00 39.75 4.02
26 27 2.615447 TGTGGAGTATCGATCACCGTAC 59.385 50.000 0.00 0.00 39.75 3.67
27 28 2.031333 GTGGAGTATCGATCACCGTACC 60.031 54.545 0.00 0.00 39.75 3.34
28 29 1.538950 GGAGTATCGATCACCGTACCC 59.461 57.143 0.00 0.00 39.75 3.69
29 30 2.502295 GAGTATCGATCACCGTACCCT 58.498 52.381 0.00 0.00 39.75 4.34
30 31 2.883386 GAGTATCGATCACCGTACCCTT 59.117 50.000 0.00 0.00 39.75 3.95
31 32 2.883386 AGTATCGATCACCGTACCCTTC 59.117 50.000 0.00 0.00 39.75 3.46
32 33 1.771565 ATCGATCACCGTACCCTTCA 58.228 50.000 0.00 0.00 39.75 3.02
33 34 0.813184 TCGATCACCGTACCCTTCAC 59.187 55.000 0.00 0.00 39.75 3.18
34 35 0.528924 CGATCACCGTACCCTTCACA 59.471 55.000 0.00 0.00 0.00 3.58
35 36 1.136305 CGATCACCGTACCCTTCACAT 59.864 52.381 0.00 0.00 0.00 3.21
36 37 2.550978 GATCACCGTACCCTTCACATG 58.449 52.381 0.00 0.00 0.00 3.21
51 52 2.159099 TCACATGTAGCCAAGGTCGATC 60.159 50.000 0.00 0.00 0.00 3.69
53 54 2.101582 ACATGTAGCCAAGGTCGATCTC 59.898 50.000 0.00 0.00 0.00 2.75
68 69 5.163561 GGTCGATCTCTCAGTTTTCTCTCAT 60.164 44.000 0.00 0.00 0.00 2.90
121 122 3.806625 ATTTCAATGAAATGGAGCCGG 57.193 42.857 19.21 0.00 40.24 6.13
123 124 0.395586 TCAATGAAATGGAGCCGGGG 60.396 55.000 2.18 0.00 0.00 5.73
124 125 0.684153 CAATGAAATGGAGCCGGGGT 60.684 55.000 2.18 0.00 0.00 4.95
129 130 0.474184 AAATGGAGCCGGGGTAGATG 59.526 55.000 2.18 0.00 0.00 2.90
130 131 0.694444 AATGGAGCCGGGGTAGATGT 60.694 55.000 2.18 0.00 0.00 3.06
132 133 2.728817 GAGCCGGGGTAGATGTCG 59.271 66.667 2.18 0.00 0.00 4.35
143 145 3.933332 GGGTAGATGTCGTTTTCCTCAAG 59.067 47.826 0.00 0.00 0.00 3.02
146 148 5.348997 GGTAGATGTCGTTTTCCTCAAGAAG 59.651 44.000 0.00 0.00 35.40 2.85
191 194 7.049799 AGAGCTCTACCTTTTGAGATACATC 57.950 40.000 16.50 0.00 32.44 3.06
206 209 8.463930 TGAGATACATCCCCATTGATAAAAAC 57.536 34.615 0.00 0.00 0.00 2.43
208 211 9.082313 GAGATACATCCCCATTGATAAAAACAT 57.918 33.333 0.00 0.00 0.00 2.71
214 217 7.493499 TCCCCATTGATAAAAACATGTTCAT 57.507 32.000 12.39 6.43 0.00 2.57
216 219 8.474025 TCCCCATTGATAAAAACATGTTCATAC 58.526 33.333 12.39 3.97 0.00 2.39
218 221 9.874205 CCCATTGATAAAAACATGTTCATACTT 57.126 29.630 12.39 0.00 0.00 2.24
229 232 8.723942 AACATGTTCATACTTGATTCTACTCC 57.276 34.615 4.92 0.00 34.47 3.85
230 233 6.980978 ACATGTTCATACTTGATTCTACTCCG 59.019 38.462 0.00 0.00 34.47 4.63
232 235 6.561614 TGTTCATACTTGATTCTACTCCGAC 58.438 40.000 0.00 0.00 0.00 4.79
233 236 5.419760 TCATACTTGATTCTACTCCGACG 57.580 43.478 0.00 0.00 0.00 5.12
234 237 2.563471 ACTTGATTCTACTCCGACGC 57.437 50.000 0.00 0.00 0.00 5.19
235 238 2.093106 ACTTGATTCTACTCCGACGCT 58.907 47.619 0.00 0.00 0.00 5.07
236 239 2.492484 ACTTGATTCTACTCCGACGCTT 59.508 45.455 0.00 0.00 0.00 4.68
238 241 3.146618 TGATTCTACTCCGACGCTTTC 57.853 47.619 0.00 0.00 0.00 2.62
239 242 2.490509 TGATTCTACTCCGACGCTTTCA 59.509 45.455 0.00 0.00 0.00 2.69
240 243 2.342910 TTCTACTCCGACGCTTTCAC 57.657 50.000 0.00 0.00 0.00 3.18
242 245 1.884579 TCTACTCCGACGCTTTCACTT 59.115 47.619 0.00 0.00 0.00 3.16
243 246 3.076621 TCTACTCCGACGCTTTCACTTA 58.923 45.455 0.00 0.00 0.00 2.24
245 248 2.607187 ACTCCGACGCTTTCACTTATG 58.393 47.619 0.00 0.00 0.00 1.90
246 249 1.324736 CTCCGACGCTTTCACTTATGC 59.675 52.381 0.00 0.00 0.00 3.14
247 250 0.373716 CCGACGCTTTCACTTATGCC 59.626 55.000 0.00 0.00 0.00 4.40
248 251 0.025001 CGACGCTTTCACTTATGCCG 59.975 55.000 0.00 0.00 0.00 5.69
249 252 0.247695 GACGCTTTCACTTATGCCGC 60.248 55.000 0.00 0.00 0.00 6.53
250 253 0.953471 ACGCTTTCACTTATGCCGCA 60.953 50.000 0.00 0.00 0.00 5.69
251 254 0.378257 CGCTTTCACTTATGCCGCAT 59.622 50.000 11.38 11.38 0.00 4.73
254 257 2.789208 CTTTCACTTATGCCGCATGTG 58.211 47.619 16.40 15.42 0.00 3.21
256 259 2.682155 TCACTTATGCCGCATGTGTA 57.318 45.000 16.40 4.49 0.00 2.90
258 261 2.006169 CACTTATGCCGCATGTGTACA 58.994 47.619 16.40 3.59 0.00 2.90
259 262 2.613595 CACTTATGCCGCATGTGTACAT 59.386 45.455 16.40 14.27 36.96 2.29
269 272 2.897271 ATGTGTACATGGCCTTGGAA 57.103 45.000 21.67 7.61 34.83 3.53
270 273 2.897271 TGTGTACATGGCCTTGGAAT 57.103 45.000 21.67 4.67 0.00 3.01
271 274 2.722094 TGTGTACATGGCCTTGGAATC 58.278 47.619 21.67 10.71 0.00 2.52
272 275 1.670811 GTGTACATGGCCTTGGAATCG 59.329 52.381 21.67 0.00 0.00 3.34
273 276 1.308998 GTACATGGCCTTGGAATCGG 58.691 55.000 21.67 0.00 0.00 4.18
275 278 0.039618 ACATGGCCTTGGAATCGGTT 59.960 50.000 21.67 0.00 0.00 4.44
276 279 0.457035 CATGGCCTTGGAATCGGTTG 59.543 55.000 10.81 0.00 0.00 3.77
277 280 0.039618 ATGGCCTTGGAATCGGTTGT 59.960 50.000 3.32 0.00 0.00 3.32
278 281 0.693622 TGGCCTTGGAATCGGTTGTA 59.306 50.000 3.32 0.00 0.00 2.41
280 283 2.291282 TGGCCTTGGAATCGGTTGTAAT 60.291 45.455 3.32 0.00 0.00 1.89
282 285 3.279434 GCCTTGGAATCGGTTGTAATCT 58.721 45.455 0.00 0.00 0.00 2.40
283 286 3.312697 GCCTTGGAATCGGTTGTAATCTC 59.687 47.826 0.00 0.00 0.00 2.75
285 288 5.126067 CCTTGGAATCGGTTGTAATCTCAT 58.874 41.667 0.00 0.00 0.00 2.90
287 290 3.876914 TGGAATCGGTTGTAATCTCATGC 59.123 43.478 0.00 0.00 0.00 4.06
288 291 4.130118 GGAATCGGTTGTAATCTCATGCT 58.870 43.478 0.00 0.00 0.00 3.79
289 292 5.163353 TGGAATCGGTTGTAATCTCATGCTA 60.163 40.000 0.00 0.00 0.00 3.49
290 293 5.758296 GGAATCGGTTGTAATCTCATGCTAA 59.242 40.000 0.00 0.00 0.00 3.09
293 296 5.730550 TCGGTTGTAATCTCATGCTAAACT 58.269 37.500 0.00 0.00 0.00 2.66
294 297 6.869695 TCGGTTGTAATCTCATGCTAAACTA 58.130 36.000 0.00 0.00 0.00 2.24
295 298 7.497595 TCGGTTGTAATCTCATGCTAAACTAT 58.502 34.615 0.00 0.00 0.00 2.12
296 299 7.652105 TCGGTTGTAATCTCATGCTAAACTATC 59.348 37.037 0.00 0.00 0.00 2.08
297 300 7.653713 CGGTTGTAATCTCATGCTAAACTATCT 59.346 37.037 0.00 0.00 0.00 1.98
298 301 9.331282 GGTTGTAATCTCATGCTAAACTATCTT 57.669 33.333 0.00 0.00 0.00 2.40
301 304 9.973450 TGTAATCTCATGCTAAACTATCTTCTC 57.027 33.333 0.00 0.00 0.00 2.87
302 305 9.418045 GTAATCTCATGCTAAACTATCTTCTCC 57.582 37.037 0.00 0.00 0.00 3.71
303 306 7.854166 ATCTCATGCTAAACTATCTTCTCCT 57.146 36.000 0.00 0.00 0.00 3.69
304 307 8.948401 ATCTCATGCTAAACTATCTTCTCCTA 57.052 34.615 0.00 0.00 0.00 2.94
305 308 8.948401 TCTCATGCTAAACTATCTTCTCCTAT 57.052 34.615 0.00 0.00 0.00 2.57
306 309 9.019656 TCTCATGCTAAACTATCTTCTCCTATC 57.980 37.037 0.00 0.00 0.00 2.08
307 310 8.712228 TCATGCTAAACTATCTTCTCCTATCA 57.288 34.615 0.00 0.00 0.00 2.15
308 311 9.147732 TCATGCTAAACTATCTTCTCCTATCAA 57.852 33.333 0.00 0.00 0.00 2.57
309 312 9.941325 CATGCTAAACTATCTTCTCCTATCAAT 57.059 33.333 0.00 0.00 0.00 2.57
310 313 9.941325 ATGCTAAACTATCTTCTCCTATCAATG 57.059 33.333 0.00 0.00 0.00 2.82
311 314 9.147732 TGCTAAACTATCTTCTCCTATCAATGA 57.852 33.333 0.00 0.00 0.00 2.57
312 315 9.988815 GCTAAACTATCTTCTCCTATCAATGAA 57.011 33.333 0.00 0.00 0.00 2.57
320 323 9.703892 ATCTTCTCCTATCAATGAAAAGATACG 57.296 33.333 0.00 0.00 32.14 3.06
321 324 7.653713 TCTTCTCCTATCAATGAAAAGATACGC 59.346 37.037 0.00 0.00 0.00 4.42
322 325 6.816136 TCTCCTATCAATGAAAAGATACGCA 58.184 36.000 0.00 0.00 0.00 5.24
323 326 6.701841 TCTCCTATCAATGAAAAGATACGCAC 59.298 38.462 0.00 0.00 0.00 5.34
324 327 5.758296 TCCTATCAATGAAAAGATACGCACC 59.242 40.000 0.00 0.00 0.00 5.01
325 328 5.760253 CCTATCAATGAAAAGATACGCACCT 59.240 40.000 0.00 0.00 0.00 4.00
326 329 6.260936 CCTATCAATGAAAAGATACGCACCTT 59.739 38.462 0.00 0.00 0.00 3.50
327 330 5.295431 TCAATGAAAAGATACGCACCTTG 57.705 39.130 0.00 0.00 0.00 3.61
328 331 3.764885 ATGAAAAGATACGCACCTTGC 57.235 42.857 0.00 0.00 40.69 4.01
329 332 2.499197 TGAAAAGATACGCACCTTGCA 58.501 42.857 0.00 0.00 45.36 4.08
330 333 3.081061 TGAAAAGATACGCACCTTGCAT 58.919 40.909 0.00 0.00 45.36 3.96
331 334 4.257731 TGAAAAGATACGCACCTTGCATA 58.742 39.130 0.00 0.00 45.36 3.14
332 335 4.881273 TGAAAAGATACGCACCTTGCATAT 59.119 37.500 0.00 0.00 45.36 1.78
333 336 5.356751 TGAAAAGATACGCACCTTGCATATT 59.643 36.000 0.00 0.00 45.36 1.28
334 337 5.835113 AAAGATACGCACCTTGCATATTT 57.165 34.783 0.00 0.00 45.36 1.40
335 338 5.835113 AAGATACGCACCTTGCATATTTT 57.165 34.783 0.00 0.00 45.36 1.82
336 339 5.835113 AGATACGCACCTTGCATATTTTT 57.165 34.783 0.00 0.00 45.36 1.94
424 427 1.068127 CCTTTGCAATGCCTATCCAGC 59.932 52.381 1.53 0.00 0.00 4.85
425 428 2.029623 CTTTGCAATGCCTATCCAGCT 58.970 47.619 1.53 0.00 0.00 4.24
426 429 2.148446 TTGCAATGCCTATCCAGCTT 57.852 45.000 1.53 0.00 0.00 3.74
427 430 1.683943 TGCAATGCCTATCCAGCTTC 58.316 50.000 1.53 0.00 0.00 3.86
428 431 0.957362 GCAATGCCTATCCAGCTTCC 59.043 55.000 0.00 0.00 0.00 3.46
429 432 1.751733 GCAATGCCTATCCAGCTTCCA 60.752 52.381 0.00 0.00 0.00 3.53
430 433 2.228059 CAATGCCTATCCAGCTTCCAG 58.772 52.381 0.00 0.00 0.00 3.86
431 434 0.769873 ATGCCTATCCAGCTTCCAGG 59.230 55.000 0.00 0.00 0.00 4.45
432 435 1.228094 GCCTATCCAGCTTCCAGGC 60.228 63.158 9.06 9.06 44.54 4.85
433 436 1.453669 CCTATCCAGCTTCCAGGCC 59.546 63.158 0.00 0.00 0.00 5.19
434 437 1.070445 CTATCCAGCTTCCAGGCCG 59.930 63.158 0.00 0.00 0.00 6.13
435 438 1.382557 TATCCAGCTTCCAGGCCGA 60.383 57.895 0.00 0.00 0.00 5.54
436 439 0.980754 TATCCAGCTTCCAGGCCGAA 60.981 55.000 0.00 0.00 0.00 4.30
437 440 1.639635 ATCCAGCTTCCAGGCCGAAT 61.640 55.000 0.00 0.00 0.00 3.34
438 441 0.980754 TCCAGCTTCCAGGCCGAATA 60.981 55.000 0.00 0.00 0.00 1.75
439 442 0.107214 CCAGCTTCCAGGCCGAATAA 60.107 55.000 0.00 0.00 0.00 1.40
440 443 1.303309 CAGCTTCCAGGCCGAATAAG 58.697 55.000 0.00 1.21 0.00 1.73
441 444 1.134401 CAGCTTCCAGGCCGAATAAGA 60.134 52.381 12.52 0.00 0.00 2.10
442 445 1.559682 AGCTTCCAGGCCGAATAAGAA 59.440 47.619 12.52 3.92 0.00 2.52
443 446 2.173569 AGCTTCCAGGCCGAATAAGAAT 59.826 45.455 12.52 0.46 0.00 2.40
444 447 2.952310 GCTTCCAGGCCGAATAAGAATT 59.048 45.455 12.52 0.00 0.00 2.17
445 448 3.243201 GCTTCCAGGCCGAATAAGAATTG 60.243 47.826 12.52 0.00 0.00 2.32
446 449 2.930950 TCCAGGCCGAATAAGAATTGG 58.069 47.619 0.00 0.00 0.00 3.16
447 450 2.507886 TCCAGGCCGAATAAGAATTGGA 59.492 45.455 0.00 0.00 0.00 3.53
448 451 3.053991 TCCAGGCCGAATAAGAATTGGAA 60.054 43.478 0.00 0.00 31.02 3.53
449 452 3.891366 CCAGGCCGAATAAGAATTGGAAT 59.109 43.478 0.00 0.00 0.00 3.01
450 453 4.022849 CCAGGCCGAATAAGAATTGGAATC 60.023 45.833 0.00 0.00 0.00 2.52
451 454 4.022849 CAGGCCGAATAAGAATTGGAATCC 60.023 45.833 0.00 0.00 0.00 3.01
452 455 3.888930 GGCCGAATAAGAATTGGAATCCA 59.111 43.478 0.00 0.00 0.00 3.41
453 456 4.022849 GGCCGAATAAGAATTGGAATCCAG 60.023 45.833 0.86 0.00 33.81 3.86
480 513 2.757868 CACACTCCCTCTCCTACAGAAG 59.242 54.545 0.00 0.00 0.00 2.85
484 517 4.081917 CACTCCCTCTCCTACAGAAGAAAC 60.082 50.000 0.00 0.00 0.00 2.78
492 525 5.104277 TCTCCTACAGAAGAAACCCAAAACA 60.104 40.000 0.00 0.00 0.00 2.83
493 526 5.130350 TCCTACAGAAGAAACCCAAAACAG 58.870 41.667 0.00 0.00 0.00 3.16
494 527 5.104277 TCCTACAGAAGAAACCCAAAACAGA 60.104 40.000 0.00 0.00 0.00 3.41
495 528 5.239525 CCTACAGAAGAAACCCAAAACAGAG 59.760 44.000 0.00 0.00 0.00 3.35
496 529 3.954258 ACAGAAGAAACCCAAAACAGAGG 59.046 43.478 0.00 0.00 0.00 3.69
504 537 2.887151 CCAAAACAGAGGGAGTGGAT 57.113 50.000 0.00 0.00 0.00 3.41
505 538 3.160679 CCAAAACAGAGGGAGTGGATT 57.839 47.619 0.00 0.00 0.00 3.01
506 539 2.821969 CCAAAACAGAGGGAGTGGATTG 59.178 50.000 0.00 0.00 0.00 2.67
507 540 2.206576 AAACAGAGGGAGTGGATTGC 57.793 50.000 0.00 0.00 0.00 3.56
508 541 1.366319 AACAGAGGGAGTGGATTGCT 58.634 50.000 0.00 0.00 0.00 3.91
509 542 2.254152 ACAGAGGGAGTGGATTGCTA 57.746 50.000 0.00 0.00 0.00 3.49
510 543 2.769209 ACAGAGGGAGTGGATTGCTAT 58.231 47.619 0.00 0.00 0.00 2.97
512 545 4.298626 ACAGAGGGAGTGGATTGCTATTA 58.701 43.478 0.00 0.00 0.00 0.98
513 546 4.910304 ACAGAGGGAGTGGATTGCTATTAT 59.090 41.667 0.00 0.00 0.00 1.28
514 547 5.370880 ACAGAGGGAGTGGATTGCTATTATT 59.629 40.000 0.00 0.00 0.00 1.40
515 548 6.126361 ACAGAGGGAGTGGATTGCTATTATTT 60.126 38.462 0.00 0.00 0.00 1.40
516 549 6.774656 CAGAGGGAGTGGATTGCTATTATTTT 59.225 38.462 0.00 0.00 0.00 1.82
518 551 6.435164 AGGGAGTGGATTGCTATTATTTTGT 58.565 36.000 0.00 0.00 0.00 2.83
519 552 6.897413 AGGGAGTGGATTGCTATTATTTTGTT 59.103 34.615 0.00 0.00 0.00 2.83
520 553 7.400052 AGGGAGTGGATTGCTATTATTTTGTTT 59.600 33.333 0.00 0.00 0.00 2.83
521 554 7.492344 GGGAGTGGATTGCTATTATTTTGTTTG 59.508 37.037 0.00 0.00 0.00 2.93
540 573 9.970395 TTTGTTTGATTGATGAATATCCATAGC 57.030 29.630 0.00 0.00 32.09 2.97
541 574 8.929260 TGTTTGATTGATGAATATCCATAGCT 57.071 30.769 0.00 0.00 32.09 3.32
542 575 9.006839 TGTTTGATTGATGAATATCCATAGCTC 57.993 33.333 0.00 0.00 32.09 4.09
545 578 7.336396 TGATTGATGAATATCCATAGCTCTGG 58.664 38.462 11.88 11.88 37.66 3.86
546 579 5.688814 TGATGAATATCCATAGCTCTGGG 57.311 43.478 17.44 5.15 36.89 4.45
547 580 3.988976 TGAATATCCATAGCTCTGGGC 57.011 47.619 17.44 0.00 36.89 5.36
548 581 7.364325 TGATGAATATCCATAGCTCTGGGCG 62.364 48.000 17.44 0.00 38.04 6.13
556 589 2.046314 GCTCTGGGCGGTTGCTTA 60.046 61.111 0.00 0.00 42.25 3.09
558 591 1.032114 GCTCTGGGCGGTTGCTTAAT 61.032 55.000 0.00 0.00 42.25 1.40
559 592 0.734889 CTCTGGGCGGTTGCTTAATG 59.265 55.000 0.00 0.00 42.25 1.90
561 594 1.173043 CTGGGCGGTTGCTTAATGAA 58.827 50.000 0.00 0.00 42.25 2.57
562 595 1.543802 CTGGGCGGTTGCTTAATGAAA 59.456 47.619 0.00 0.00 42.25 2.69
563 596 1.964223 TGGGCGGTTGCTTAATGAAAA 59.036 42.857 0.00 0.00 42.25 2.29
564 597 2.365617 TGGGCGGTTGCTTAATGAAAAA 59.634 40.909 0.00 0.00 42.25 1.94
592 881 7.869016 ACGTATTTCATGACTAATATGACCG 57.131 36.000 19.45 12.82 34.50 4.79
593 882 6.866770 ACGTATTTCATGACTAATATGACCGG 59.133 38.462 19.45 0.00 34.50 5.28
596 885 7.730364 ATTTCATGACTAATATGACCGGTTC 57.270 36.000 9.42 2.34 34.50 3.62
601 890 7.441157 TCATGACTAATATGACCGGTTCAAATC 59.559 37.037 9.42 0.00 37.92 2.17
602 891 5.751509 TGACTAATATGACCGGTTCAAATCG 59.248 40.000 9.42 0.00 37.92 3.34
605 894 1.821216 ATGACCGGTTCAAATCGCTT 58.179 45.000 9.42 0.00 37.92 4.68
606 895 0.871722 TGACCGGTTCAAATCGCTTG 59.128 50.000 9.42 0.00 36.25 4.01
607 896 0.454452 GACCGGTTCAAATCGCTTGC 60.454 55.000 9.42 0.00 34.76 4.01
610 899 0.729140 CGGTTCAAATCGCTTGCACC 60.729 55.000 8.23 8.23 45.07 5.01
611 900 3.863681 GTTCAAATCGCTTGCACCA 57.136 47.368 0.00 0.00 34.76 4.17
612 901 2.352503 GTTCAAATCGCTTGCACCAT 57.647 45.000 0.00 0.00 34.76 3.55
613 902 1.987770 GTTCAAATCGCTTGCACCATG 59.012 47.619 0.00 0.00 34.76 3.66
614 903 0.109179 TCAAATCGCTTGCACCATGC 60.109 50.000 0.00 0.00 45.29 4.06
632 1530 7.171337 GCACCATGCAAATATAAATTAGGTTGG 59.829 37.037 0.00 0.00 44.26 3.77
638 1536 8.143193 TGCAAATATAAATTAGGTTGGCATCTG 58.857 33.333 0.00 0.00 0.00 2.90
639 1537 7.599998 GCAAATATAAATTAGGTTGGCATCTGG 59.400 37.037 0.00 0.00 0.00 3.86
641 1539 7.765695 ATATAAATTAGGTTGGCATCTGGTG 57.234 36.000 0.00 0.00 0.00 4.17
656 1554 1.272490 CTGGTGCTTGAAGTCGTCCTA 59.728 52.381 0.00 0.00 0.00 2.94
657 1555 1.689813 TGGTGCTTGAAGTCGTCCTAA 59.310 47.619 0.00 0.00 0.00 2.69
658 1556 2.103432 TGGTGCTTGAAGTCGTCCTAAA 59.897 45.455 0.00 0.00 0.00 1.85
659 1557 3.244422 TGGTGCTTGAAGTCGTCCTAAAT 60.244 43.478 0.00 0.00 0.00 1.40
660 1558 3.125316 GGTGCTTGAAGTCGTCCTAAATG 59.875 47.826 0.00 0.00 0.00 2.32
661 1559 3.994392 GTGCTTGAAGTCGTCCTAAATGA 59.006 43.478 0.00 0.00 0.00 2.57
662 1560 4.631813 GTGCTTGAAGTCGTCCTAAATGAT 59.368 41.667 0.00 0.00 0.00 2.45
669 2792 8.515695 TGAAGTCGTCCTAAATGATAGAAGTA 57.484 34.615 0.00 0.00 0.00 2.24
713 2836 6.379417 CCTAAAGGAGAAAATTTCATCCAGCT 59.621 38.462 18.80 8.75 37.39 4.24
761 2884 7.275341 TGAGGTTTAATAAAATCAAGCAATGCG 59.725 33.333 0.00 0.00 0.00 4.73
858 2990 1.525995 CGGCCATGTGACCCATACC 60.526 63.158 2.24 0.00 30.71 2.73
1386 4500 4.619227 CCAGGTGTGCCGACGGTT 62.619 66.667 16.73 0.00 40.50 4.44
1620 4752 4.290622 CCCAAGGTGCCACTGCCT 62.291 66.667 0.00 0.00 36.33 4.75
1785 4933 7.325599 ACGAGTGTAATAAAACTGTAACGTC 57.674 36.000 0.00 0.00 0.00 4.34
1787 4935 6.363088 CGAGTGTAATAAAACTGTAACGTCCA 59.637 38.462 0.00 0.00 0.00 4.02
1788 4936 7.096106 CGAGTGTAATAAAACTGTAACGTCCAA 60.096 37.037 0.00 0.00 0.00 3.53
1849 5036 1.522676 CAGCACTTGTGTCTACGTGTG 59.477 52.381 0.00 0.00 36.42 3.82
1850 5037 0.232303 GCACTTGTGTCTACGTGTGC 59.768 55.000 7.49 7.49 44.71 4.57
1963 5154 5.701750 TGTATGCTTGTACGTTTATGTGGTT 59.298 36.000 0.00 0.00 0.00 3.67
1969 5160 5.910637 TGTACGTTTATGTGGTTCAAGAC 57.089 39.130 0.00 0.00 0.00 3.01
1970 5161 5.358090 TGTACGTTTATGTGGTTCAAGACA 58.642 37.500 0.00 0.00 0.00 3.41
1971 5162 5.992829 TGTACGTTTATGTGGTTCAAGACAT 59.007 36.000 0.00 0.00 36.72 3.06
1972 5163 6.483974 TGTACGTTTATGTGGTTCAAGACATT 59.516 34.615 0.00 0.00 34.60 2.71
1973 5164 5.757886 ACGTTTATGTGGTTCAAGACATTG 58.242 37.500 0.00 0.00 34.60 2.82
1974 5165 5.298276 ACGTTTATGTGGTTCAAGACATTGT 59.702 36.000 0.00 0.00 37.68 2.71
1975 5166 6.183360 ACGTTTATGTGGTTCAAGACATTGTT 60.183 34.615 0.00 0.00 37.68 2.83
1976 5167 6.695278 CGTTTATGTGGTTCAAGACATTGTTT 59.305 34.615 0.00 0.00 37.68 2.83
1977 5168 7.305935 CGTTTATGTGGTTCAAGACATTGTTTG 60.306 37.037 0.00 0.00 37.68 2.93
1978 5169 5.596836 ATGTGGTTCAAGACATTGTTTGT 57.403 34.783 0.00 0.00 42.79 2.83
1979 5170 4.742417 TGTGGTTCAAGACATTGTTTGTG 58.258 39.130 0.00 0.00 39.18 3.33
1980 5171 4.219507 TGTGGTTCAAGACATTGTTTGTGT 59.780 37.500 0.00 0.00 39.18 3.72
1981 5172 5.416013 TGTGGTTCAAGACATTGTTTGTGTA 59.584 36.000 0.00 0.00 39.18 2.90
1982 5173 5.971202 GTGGTTCAAGACATTGTTTGTGTAG 59.029 40.000 0.00 0.00 39.18 2.74
1983 5174 5.067153 TGGTTCAAGACATTGTTTGTGTAGG 59.933 40.000 0.00 0.00 39.18 3.18
1984 5175 5.298276 GGTTCAAGACATTGTTTGTGTAGGA 59.702 40.000 0.00 0.00 39.18 2.94
1985 5176 6.183360 GGTTCAAGACATTGTTTGTGTAGGAA 60.183 38.462 0.00 0.00 39.18 3.36
1986 5177 7.254852 GTTCAAGACATTGTTTGTGTAGGAAA 58.745 34.615 0.00 0.00 39.18 3.13
1987 5178 7.397892 TCAAGACATTGTTTGTGTAGGAAAA 57.602 32.000 0.00 0.00 39.18 2.29
1988 5179 7.479980 TCAAGACATTGTTTGTGTAGGAAAAG 58.520 34.615 0.00 0.00 39.18 2.27
1989 5180 6.391227 AGACATTGTTTGTGTAGGAAAAGG 57.609 37.500 0.00 0.00 39.18 3.11
1990 5181 5.301805 AGACATTGTTTGTGTAGGAAAAGGG 59.698 40.000 0.00 0.00 39.18 3.95
1991 5182 4.343814 ACATTGTTTGTGTAGGAAAAGGGG 59.656 41.667 0.00 0.00 37.11 4.79
1992 5183 3.673543 TGTTTGTGTAGGAAAAGGGGT 57.326 42.857 0.00 0.00 0.00 4.95
1993 5184 4.792513 TGTTTGTGTAGGAAAAGGGGTA 57.207 40.909 0.00 0.00 0.00 3.69
1994 5185 5.327737 TGTTTGTGTAGGAAAAGGGGTAT 57.672 39.130 0.00 0.00 0.00 2.73
1995 5186 5.707495 TGTTTGTGTAGGAAAAGGGGTATT 58.293 37.500 0.00 0.00 0.00 1.89
1996 5187 5.536916 TGTTTGTGTAGGAAAAGGGGTATTG 59.463 40.000 0.00 0.00 0.00 1.90
1997 5188 3.692690 TGTGTAGGAAAAGGGGTATTGC 58.307 45.455 0.00 0.00 0.00 3.56
1998 5189 3.332485 TGTGTAGGAAAAGGGGTATTGCT 59.668 43.478 0.00 0.00 0.00 3.91
1999 5190 3.945921 GTGTAGGAAAAGGGGTATTGCTC 59.054 47.826 0.00 0.00 0.00 4.26
2000 5191 2.828661 AGGAAAAGGGGTATTGCTCC 57.171 50.000 0.00 0.00 38.29 4.70
2001 5192 2.000048 AGGAAAAGGGGTATTGCTCCA 59.000 47.619 0.00 0.00 41.40 3.86
2002 5193 2.587307 AGGAAAAGGGGTATTGCTCCAT 59.413 45.455 0.00 0.00 41.40 3.41
2003 5194 3.012844 AGGAAAAGGGGTATTGCTCCATT 59.987 43.478 0.00 0.00 41.40 3.16
2004 5195 3.774766 GGAAAAGGGGTATTGCTCCATTT 59.225 43.478 0.00 0.00 40.96 2.32
2005 5196 4.959839 GGAAAAGGGGTATTGCTCCATTTA 59.040 41.667 0.00 0.00 38.62 1.40
2006 5197 5.602561 GGAAAAGGGGTATTGCTCCATTTAT 59.397 40.000 0.00 0.00 38.62 1.40
2007 5198 6.780522 GGAAAAGGGGTATTGCTCCATTTATA 59.219 38.462 0.00 0.00 38.62 0.98
2008 5199 7.255836 GGAAAAGGGGTATTGCTCCATTTATAC 60.256 40.741 0.00 0.00 38.62 1.47
2009 5200 4.906618 AGGGGTATTGCTCCATTTATACG 58.093 43.478 0.00 0.00 41.40 3.06
2010 5201 4.349930 AGGGGTATTGCTCCATTTATACGT 59.650 41.667 0.00 0.00 41.40 3.57
2011 5202 4.454504 GGGGTATTGCTCCATTTATACGTG 59.545 45.833 0.00 0.00 37.78 4.49
2012 5203 5.061179 GGGTATTGCTCCATTTATACGTGT 58.939 41.667 0.00 0.00 0.00 4.49
2013 5204 5.049680 GGGTATTGCTCCATTTATACGTGTG 60.050 44.000 0.00 0.00 0.00 3.82
2014 5205 4.552166 ATTGCTCCATTTATACGTGTGC 57.448 40.909 0.00 0.00 0.00 4.57
2030 5267 8.981724 ATACGTGTGCCACTGTATAATATTAG 57.018 34.615 10.31 0.00 34.81 1.73
2249 5488 1.493854 AACCAATGGAGTGGGGCGTA 61.494 55.000 6.16 0.00 43.56 4.42
2382 5649 9.167311 GAAATACCTTGAAATGTGATCTGTACT 57.833 33.333 0.00 0.00 0.00 2.73
2387 5655 9.003658 ACCTTGAAATGTGATCTGTACTAAAAG 57.996 33.333 0.00 0.00 0.00 2.27
2407 5675 6.409524 AAAGCAAATTCATGGACTTTGAGA 57.590 33.333 15.29 0.00 35.26 3.27
2463 5731 1.301716 GCGCAGAGACCAACTCCAA 60.302 57.895 0.30 0.00 45.96 3.53
2467 5735 0.320771 CAGAGACCAACTCCAACCCG 60.321 60.000 0.00 0.00 45.96 5.28
2476 5744 2.180432 ACTCCAACCCGAAAGCTAAC 57.820 50.000 0.00 0.00 0.00 2.34
2484 5752 3.105283 ACCCGAAAGCTAACTGGACTAT 58.895 45.455 7.34 0.00 0.00 2.12
2492 5760 5.104259 AGCTAACTGGACTATTTGAAGGG 57.896 43.478 0.00 0.00 0.00 3.95
2493 5761 4.536489 AGCTAACTGGACTATTTGAAGGGT 59.464 41.667 0.00 0.00 0.00 4.34
2523 5791 4.456911 TCCTCAACTGTCTGCAAATGATTC 59.543 41.667 0.00 0.00 0.00 2.52
2535 5803 9.443283 GTCTGCAAATGATTCTGTTCATATTAC 57.557 33.333 0.00 0.00 35.29 1.89
2620 5890 6.939132 ATGAGACTTTGTTCATGATGGATC 57.061 37.500 0.00 0.00 33.01 3.36
2632 5904 6.325993 TCATGATGGATCTTTTCCCAACTA 57.674 37.500 0.00 0.00 44.77 2.24
2662 5934 2.556189 TGCGCAATGACCAATTACAACT 59.444 40.909 8.16 0.00 0.00 3.16
2664 5936 4.142708 TGCGCAATGACCAATTACAACTAG 60.143 41.667 8.16 0.00 0.00 2.57
2737 6009 9.499479 CTAATGTATGACTATGCTTCTTTGGAT 57.501 33.333 0.00 0.00 0.00 3.41
2739 6011 6.888105 TGTATGACTATGCTTCTTTGGATGA 58.112 36.000 0.00 0.00 0.00 2.92
2752 6024 7.275123 GCTTCTTTGGATGATTTTCTTAAGCAG 59.725 37.037 0.00 0.00 35.66 4.24
2755 6027 4.280819 TGGATGATTTTCTTAAGCAGGGG 58.719 43.478 0.00 0.00 0.00 4.79
2759 6031 6.098838 GGATGATTTTCTTAAGCAGGGGAAAT 59.901 38.462 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.551388 GGTGATCGATACTCCACATTCTC 58.449 47.826 14.66 0.00 0.00 2.87
1 2 3.004839 CGGTGATCGATACTCCACATTCT 59.995 47.826 14.66 0.00 42.43 2.40
2 3 3.243434 ACGGTGATCGATACTCCACATTC 60.243 47.826 14.66 0.38 42.43 2.67
3 4 2.693591 ACGGTGATCGATACTCCACATT 59.306 45.455 14.66 1.08 42.43 2.71
4 5 2.307768 ACGGTGATCGATACTCCACAT 58.692 47.619 14.66 2.43 42.43 3.21
5 6 1.758936 ACGGTGATCGATACTCCACA 58.241 50.000 14.66 0.00 42.43 4.17
6 7 2.031333 GGTACGGTGATCGATACTCCAC 60.031 54.545 0.00 1.76 42.43 4.02
7 8 2.224606 GGTACGGTGATCGATACTCCA 58.775 52.381 0.00 0.00 42.43 3.86
8 9 1.538950 GGGTACGGTGATCGATACTCC 59.461 57.143 0.00 0.20 42.43 3.85
9 10 2.502295 AGGGTACGGTGATCGATACTC 58.498 52.381 0.00 0.00 42.43 2.59
10 11 2.653234 AGGGTACGGTGATCGATACT 57.347 50.000 0.00 0.00 42.43 2.12
11 12 2.620115 TGAAGGGTACGGTGATCGATAC 59.380 50.000 0.00 0.00 42.43 2.24
12 13 2.620115 GTGAAGGGTACGGTGATCGATA 59.380 50.000 0.00 0.00 42.43 2.92
13 14 1.407979 GTGAAGGGTACGGTGATCGAT 59.592 52.381 0.00 0.00 42.43 3.59
14 15 0.813184 GTGAAGGGTACGGTGATCGA 59.187 55.000 0.00 0.00 42.43 3.59
15 16 0.528924 TGTGAAGGGTACGGTGATCG 59.471 55.000 0.00 0.00 45.88 3.69
16 17 2.093658 ACATGTGAAGGGTACGGTGATC 60.094 50.000 0.00 0.00 0.00 2.92
17 18 1.906574 ACATGTGAAGGGTACGGTGAT 59.093 47.619 0.00 0.00 0.00 3.06
18 19 1.344065 ACATGTGAAGGGTACGGTGA 58.656 50.000 0.00 0.00 0.00 4.02
19 20 2.888594 CTACATGTGAAGGGTACGGTG 58.111 52.381 9.11 0.00 0.00 4.94
20 21 1.206371 GCTACATGTGAAGGGTACGGT 59.794 52.381 9.11 0.00 0.00 4.83
21 22 1.472728 GGCTACATGTGAAGGGTACGG 60.473 57.143 9.11 0.00 0.00 4.02
22 23 1.206132 TGGCTACATGTGAAGGGTACG 59.794 52.381 9.11 0.00 0.00 3.67
23 24 3.270877 CTTGGCTACATGTGAAGGGTAC 58.729 50.000 9.11 0.00 0.00 3.34
24 25 2.238646 CCTTGGCTACATGTGAAGGGTA 59.761 50.000 9.11 0.00 31.24 3.69
25 26 1.004745 CCTTGGCTACATGTGAAGGGT 59.995 52.381 9.11 0.00 31.24 4.34
26 27 1.004745 ACCTTGGCTACATGTGAAGGG 59.995 52.381 21.95 13.86 38.00 3.95
27 28 2.359900 GACCTTGGCTACATGTGAAGG 58.640 52.381 18.81 18.81 39.35 3.46
28 29 2.002586 CGACCTTGGCTACATGTGAAG 58.997 52.381 9.11 0.00 0.00 3.02
29 30 1.621317 TCGACCTTGGCTACATGTGAA 59.379 47.619 9.11 0.00 0.00 3.18
30 31 1.262417 TCGACCTTGGCTACATGTGA 58.738 50.000 9.11 0.00 0.00 3.58
31 32 2.159043 AGATCGACCTTGGCTACATGTG 60.159 50.000 9.11 0.00 0.00 3.21
32 33 2.101582 GAGATCGACCTTGGCTACATGT 59.898 50.000 2.69 2.69 0.00 3.21
33 34 2.363680 AGAGATCGACCTTGGCTACATG 59.636 50.000 0.00 0.00 0.00 3.21
34 35 2.625790 GAGAGATCGACCTTGGCTACAT 59.374 50.000 0.00 0.00 0.00 2.29
35 36 2.025155 GAGAGATCGACCTTGGCTACA 58.975 52.381 0.00 0.00 0.00 2.74
36 37 2.025155 TGAGAGATCGACCTTGGCTAC 58.975 52.381 0.00 0.00 0.00 3.58
51 52 4.389382 CAGCACATGAGAGAAAACTGAGAG 59.611 45.833 0.00 0.00 0.00 3.20
53 54 4.063689 ACAGCACATGAGAGAAAACTGAG 58.936 43.478 0.00 0.00 0.00 3.35
68 69 7.094631 ACAGAGTAACGATTTATTACAGCACA 58.905 34.615 0.00 0.00 35.39 4.57
121 122 3.604875 TGAGGAAAACGACATCTACCC 57.395 47.619 0.00 0.00 0.00 3.69
123 124 6.157211 TCTTCTTGAGGAAAACGACATCTAC 58.843 40.000 0.00 0.00 33.07 2.59
124 125 6.340962 TCTTCTTGAGGAAAACGACATCTA 57.659 37.500 0.00 0.00 33.07 1.98
129 130 5.524281 AGAAGTTCTTCTTGAGGAAAACGAC 59.476 40.000 9.00 0.00 36.40 4.34
130 131 5.671493 AGAAGTTCTTCTTGAGGAAAACGA 58.329 37.500 9.00 0.00 36.40 3.85
132 133 5.559225 GCGAGAAGTTCTTCTTGAGGAAAAC 60.559 44.000 25.30 8.81 36.40 2.43
143 145 3.242252 GCTTAGCATGCGAGAAGTTCTTC 60.242 47.826 22.95 4.58 0.00 2.87
146 148 2.728368 GCTTAGCATGCGAGAAGTTC 57.272 50.000 22.95 9.14 0.00 3.01
169 172 5.071115 GGGATGTATCTCAAAAGGTAGAGCT 59.929 44.000 0.00 0.00 0.00 4.09
191 194 8.477256 AGTATGAACATGTTTTTATCAATGGGG 58.523 33.333 13.36 0.00 0.00 4.96
206 209 7.168302 GTCGGAGTAGAATCAAGTATGAACATG 59.832 40.741 0.00 0.00 39.49 3.21
208 211 6.561614 GTCGGAGTAGAATCAAGTATGAACA 58.438 40.000 0.00 0.00 39.49 3.18
214 217 3.276857 AGCGTCGGAGTAGAATCAAGTA 58.723 45.455 0.00 0.00 0.00 2.24
216 219 2.853731 AGCGTCGGAGTAGAATCAAG 57.146 50.000 0.00 0.00 0.00 3.02
218 221 2.490509 TGAAAGCGTCGGAGTAGAATCA 59.509 45.455 0.00 0.00 0.00 2.57
219 222 2.853003 GTGAAAGCGTCGGAGTAGAATC 59.147 50.000 0.00 0.00 0.00 2.52
221 224 1.884579 AGTGAAAGCGTCGGAGTAGAA 59.115 47.619 0.00 0.00 0.00 2.10
222 225 1.531423 AGTGAAAGCGTCGGAGTAGA 58.469 50.000 0.00 0.00 0.00 2.59
223 226 2.349297 AAGTGAAAGCGTCGGAGTAG 57.651 50.000 0.00 0.00 0.00 2.57
225 228 2.607187 CATAAGTGAAAGCGTCGGAGT 58.393 47.619 0.00 0.00 0.00 3.85
227 230 1.355971 GCATAAGTGAAAGCGTCGGA 58.644 50.000 0.00 0.00 0.00 4.55
228 231 0.373716 GGCATAAGTGAAAGCGTCGG 59.626 55.000 0.00 0.00 0.00 4.79
229 232 0.025001 CGGCATAAGTGAAAGCGTCG 59.975 55.000 0.00 0.00 0.00 5.12
230 233 0.247695 GCGGCATAAGTGAAAGCGTC 60.248 55.000 0.00 0.00 0.00 5.19
232 235 0.378257 ATGCGGCATAAGTGAAAGCG 59.622 50.000 14.96 0.00 0.00 4.68
233 236 1.133025 ACATGCGGCATAAGTGAAAGC 59.867 47.619 16.21 0.00 0.00 3.51
234 237 2.162208 ACACATGCGGCATAAGTGAAAG 59.838 45.455 29.21 13.68 34.47 2.62
235 238 2.158559 ACACATGCGGCATAAGTGAAA 58.841 42.857 29.21 0.00 34.47 2.69
236 239 1.819928 ACACATGCGGCATAAGTGAA 58.180 45.000 29.21 0.00 34.47 3.18
238 241 2.006169 TGTACACATGCGGCATAAGTG 58.994 47.619 23.88 23.88 36.34 3.16
239 242 2.394930 TGTACACATGCGGCATAAGT 57.605 45.000 16.21 17.99 0.00 2.24
240 243 3.257745 CATGTACACATGCGGCATAAG 57.742 47.619 16.21 13.13 45.92 1.73
250 253 2.897271 TTCCAAGGCCATGTACACAT 57.103 45.000 5.01 0.00 36.96 3.21
251 254 2.722094 GATTCCAAGGCCATGTACACA 58.278 47.619 5.01 0.00 0.00 3.72
254 257 1.308998 CCGATTCCAAGGCCATGTAC 58.691 55.000 5.01 0.00 0.00 2.90
256 259 0.039618 AACCGATTCCAAGGCCATGT 59.960 50.000 5.01 0.00 0.00 3.21
258 261 0.039618 ACAACCGATTCCAAGGCCAT 59.960 50.000 5.01 0.00 0.00 4.40
259 262 0.693622 TACAACCGATTCCAAGGCCA 59.306 50.000 5.01 0.00 0.00 5.36
260 263 1.828979 TTACAACCGATTCCAAGGCC 58.171 50.000 0.00 0.00 0.00 5.19
261 264 3.279434 AGATTACAACCGATTCCAAGGC 58.721 45.455 0.00 0.00 0.00 4.35
262 265 4.513442 TGAGATTACAACCGATTCCAAGG 58.487 43.478 0.00 0.00 0.00 3.61
263 266 5.504665 GCATGAGATTACAACCGATTCCAAG 60.505 44.000 0.00 0.00 0.00 3.61
266 269 4.130118 AGCATGAGATTACAACCGATTCC 58.870 43.478 0.00 0.00 0.00 3.01
267 270 6.844696 TTAGCATGAGATTACAACCGATTC 57.155 37.500 0.00 0.00 0.00 2.52
268 271 6.823689 AGTTTAGCATGAGATTACAACCGATT 59.176 34.615 0.00 0.00 0.00 3.34
269 272 6.349300 AGTTTAGCATGAGATTACAACCGAT 58.651 36.000 0.00 0.00 0.00 4.18
270 273 5.730550 AGTTTAGCATGAGATTACAACCGA 58.269 37.500 0.00 0.00 0.00 4.69
271 274 7.653713 AGATAGTTTAGCATGAGATTACAACCG 59.346 37.037 0.00 0.00 0.00 4.44
272 275 8.894768 AGATAGTTTAGCATGAGATTACAACC 57.105 34.615 0.00 0.00 0.00 3.77
275 278 9.973450 GAGAAGATAGTTTAGCATGAGATTACA 57.027 33.333 0.00 0.00 0.00 2.41
276 279 9.418045 GGAGAAGATAGTTTAGCATGAGATTAC 57.582 37.037 0.00 0.00 0.00 1.89
277 280 9.373450 AGGAGAAGATAGTTTAGCATGAGATTA 57.627 33.333 0.00 0.00 0.00 1.75
278 281 8.261349 AGGAGAAGATAGTTTAGCATGAGATT 57.739 34.615 0.00 0.00 0.00 2.40
280 283 8.948401 ATAGGAGAAGATAGTTTAGCATGAGA 57.052 34.615 0.00 0.00 0.00 3.27
282 285 8.712228 TGATAGGAGAAGATAGTTTAGCATGA 57.288 34.615 0.00 0.00 0.00 3.07
283 286 9.941325 ATTGATAGGAGAAGATAGTTTAGCATG 57.059 33.333 0.00 0.00 0.00 4.06
285 288 9.147732 TCATTGATAGGAGAAGATAGTTTAGCA 57.852 33.333 0.00 0.00 0.00 3.49
294 297 9.703892 CGTATCTTTTCATTGATAGGAGAAGAT 57.296 33.333 10.82 10.82 43.82 2.40
295 298 7.653713 GCGTATCTTTTCATTGATAGGAGAAGA 59.346 37.037 0.00 0.00 38.91 2.87
296 299 7.439356 TGCGTATCTTTTCATTGATAGGAGAAG 59.561 37.037 0.00 0.00 34.73 2.85
297 300 7.224753 GTGCGTATCTTTTCATTGATAGGAGAA 59.775 37.037 0.00 0.00 34.73 2.87
298 301 6.701841 GTGCGTATCTTTTCATTGATAGGAGA 59.298 38.462 0.00 0.00 34.73 3.71
299 302 6.073548 GGTGCGTATCTTTTCATTGATAGGAG 60.074 42.308 0.00 0.00 34.73 3.69
300 303 5.758296 GGTGCGTATCTTTTCATTGATAGGA 59.242 40.000 0.00 0.00 34.73 2.94
301 304 5.760253 AGGTGCGTATCTTTTCATTGATAGG 59.240 40.000 0.00 0.00 35.44 2.57
302 305 6.851222 AGGTGCGTATCTTTTCATTGATAG 57.149 37.500 0.00 0.00 0.00 2.08
303 306 6.458206 GCAAGGTGCGTATCTTTTCATTGATA 60.458 38.462 0.00 0.00 31.71 2.15
304 307 5.677091 GCAAGGTGCGTATCTTTTCATTGAT 60.677 40.000 0.00 0.00 31.71 2.57
305 308 4.379394 GCAAGGTGCGTATCTTTTCATTGA 60.379 41.667 0.00 0.00 31.71 2.57
306 309 3.853671 GCAAGGTGCGTATCTTTTCATTG 59.146 43.478 0.00 0.00 31.71 2.82
307 310 4.096732 GCAAGGTGCGTATCTTTTCATT 57.903 40.909 0.00 0.00 31.71 2.57
308 311 3.764885 GCAAGGTGCGTATCTTTTCAT 57.235 42.857 0.00 0.00 31.71 2.57
346 349 2.649129 GCCCCGCCATGCTCTTTTT 61.649 57.895 0.00 0.00 0.00 1.94
347 350 3.070576 GCCCCGCCATGCTCTTTT 61.071 61.111 0.00 0.00 0.00 2.27
410 413 2.228059 CTGGAAGCTGGATAGGCATTG 58.772 52.381 0.00 0.00 0.00 2.82
424 427 3.316308 CCAATTCTTATTCGGCCTGGAAG 59.684 47.826 0.00 0.00 0.00 3.46
425 428 3.053991 TCCAATTCTTATTCGGCCTGGAA 60.054 43.478 0.00 0.00 0.00 3.53
426 429 2.507886 TCCAATTCTTATTCGGCCTGGA 59.492 45.455 0.00 0.00 0.00 3.86
427 430 2.930950 TCCAATTCTTATTCGGCCTGG 58.069 47.619 0.00 0.00 0.00 4.45
428 431 4.022849 GGATTCCAATTCTTATTCGGCCTG 60.023 45.833 0.00 0.00 0.00 4.85
429 432 4.145052 GGATTCCAATTCTTATTCGGCCT 58.855 43.478 0.00 0.00 0.00 5.19
430 433 3.888930 TGGATTCCAATTCTTATTCGGCC 59.111 43.478 1.94 0.00 0.00 6.13
431 434 4.557496 GCTGGATTCCAATTCTTATTCGGC 60.557 45.833 6.88 0.00 30.80 5.54
432 435 4.319766 CGCTGGATTCCAATTCTTATTCGG 60.320 45.833 6.88 0.00 30.80 4.30
433 436 4.776743 CGCTGGATTCCAATTCTTATTCG 58.223 43.478 6.88 0.00 30.80 3.34
434 437 4.540824 GCGCTGGATTCCAATTCTTATTC 58.459 43.478 6.88 0.00 30.80 1.75
435 438 3.319122 GGCGCTGGATTCCAATTCTTATT 59.681 43.478 7.64 0.00 30.80 1.40
436 439 2.887152 GGCGCTGGATTCCAATTCTTAT 59.113 45.455 7.64 0.00 30.80 1.73
437 440 2.297701 GGCGCTGGATTCCAATTCTTA 58.702 47.619 7.64 0.00 30.80 2.10
438 441 1.106285 GGCGCTGGATTCCAATTCTT 58.894 50.000 7.64 0.00 30.80 2.52
439 442 0.753111 GGGCGCTGGATTCCAATTCT 60.753 55.000 7.64 0.00 30.80 2.40
440 443 1.735973 GGGCGCTGGATTCCAATTC 59.264 57.895 7.64 0.00 30.80 2.17
441 444 1.758122 GGGGCGCTGGATTCCAATT 60.758 57.895 7.64 0.00 30.80 2.32
442 445 2.123726 GGGGCGCTGGATTCCAAT 60.124 61.111 7.64 0.00 30.80 3.16
443 446 3.656280 TGGGGCGCTGGATTCCAA 61.656 61.111 7.64 0.00 30.80 3.53
444 447 4.424711 GTGGGGCGCTGGATTCCA 62.425 66.667 7.64 5.05 0.00 3.53
445 448 4.424711 TGTGGGGCGCTGGATTCC 62.425 66.667 7.64 0.00 0.00 3.01
446 449 3.134127 GTGTGGGGCGCTGGATTC 61.134 66.667 7.64 0.00 0.00 2.52
447 450 3.628646 GAGTGTGGGGCGCTGGATT 62.629 63.158 7.64 0.00 38.19 3.01
448 451 4.101448 GAGTGTGGGGCGCTGGAT 62.101 66.667 7.64 0.00 38.19 3.41
480 513 2.623416 CACTCCCTCTGTTTTGGGTTTC 59.377 50.000 0.00 0.00 43.74 2.78
484 517 0.771127 TCCACTCCCTCTGTTTTGGG 59.229 55.000 0.00 0.00 44.66 4.12
492 525 6.521527 AAATAATAGCAATCCACTCCCTCT 57.478 37.500 0.00 0.00 0.00 3.69
493 526 6.547510 ACAAAATAATAGCAATCCACTCCCTC 59.452 38.462 0.00 0.00 0.00 4.30
494 527 6.435164 ACAAAATAATAGCAATCCACTCCCT 58.565 36.000 0.00 0.00 0.00 4.20
495 528 6.715347 ACAAAATAATAGCAATCCACTCCC 57.285 37.500 0.00 0.00 0.00 4.30
496 529 8.250332 TCAAACAAAATAATAGCAATCCACTCC 58.750 33.333 0.00 0.00 0.00 3.85
514 547 9.970395 GCTATGGATATTCATCAATCAAACAAA 57.030 29.630 0.00 0.00 32.32 2.83
515 548 9.358406 AGCTATGGATATTCATCAATCAAACAA 57.642 29.630 0.00 0.00 32.32 2.83
516 549 8.929260 AGCTATGGATATTCATCAATCAAACA 57.071 30.769 0.00 0.00 32.32 2.83
518 551 9.227777 CAGAGCTATGGATATTCATCAATCAAA 57.772 33.333 0.00 0.00 32.32 2.69
519 552 7.827729 CCAGAGCTATGGATATTCATCAATCAA 59.172 37.037 23.35 0.00 43.57 2.57
520 553 7.336396 CCAGAGCTATGGATATTCATCAATCA 58.664 38.462 23.35 0.00 43.57 2.57
521 554 6.766944 CCCAGAGCTATGGATATTCATCAATC 59.233 42.308 28.99 0.00 43.57 2.67
524 557 4.080695 GCCCAGAGCTATGGATATTCATCA 60.081 45.833 28.99 0.00 43.57 3.07
526 559 3.118482 CGCCCAGAGCTATGGATATTCAT 60.118 47.826 28.99 1.18 43.57 2.57
528 561 2.419297 CCGCCCAGAGCTATGGATATTC 60.419 54.545 28.99 10.54 43.57 1.75
529 562 1.556911 CCGCCCAGAGCTATGGATATT 59.443 52.381 28.99 0.00 43.57 1.28
530 563 1.198713 CCGCCCAGAGCTATGGATAT 58.801 55.000 28.99 0.00 43.57 1.63
531 564 0.178932 ACCGCCCAGAGCTATGGATA 60.179 55.000 28.99 0.00 43.57 2.59
533 566 1.689233 AACCGCCCAGAGCTATGGA 60.689 57.895 28.99 0.00 43.57 3.41
534 567 1.524621 CAACCGCCCAGAGCTATGG 60.525 63.158 20.90 20.90 40.39 2.74
535 568 2.182842 GCAACCGCCCAGAGCTATG 61.183 63.158 0.00 0.00 40.39 2.23
536 569 1.915078 AAGCAACCGCCCAGAGCTAT 61.915 55.000 0.00 0.00 40.39 2.97
537 570 1.261938 TAAGCAACCGCCCAGAGCTA 61.262 55.000 0.00 0.00 40.39 3.32
538 571 2.124507 TTAAGCAACCGCCCAGAGCT 62.125 55.000 0.00 0.00 40.39 4.09
539 572 1.032114 ATTAAGCAACCGCCCAGAGC 61.032 55.000 0.00 0.00 39.83 4.09
540 573 0.734889 CATTAAGCAACCGCCCAGAG 59.265 55.000 0.00 0.00 39.83 3.35
541 574 0.326595 TCATTAAGCAACCGCCCAGA 59.673 50.000 0.00 0.00 39.83 3.86
542 575 1.173043 TTCATTAAGCAACCGCCCAG 58.827 50.000 0.00 0.00 39.83 4.45
570 859 8.603242 AACCGGTCATATTAGTCATGAAATAC 57.397 34.615 8.04 0.00 34.32 1.89
571 860 8.425703 TGAACCGGTCATATTAGTCATGAAATA 58.574 33.333 8.04 0.00 34.32 1.40
578 867 5.751509 CGATTTGAACCGGTCATATTAGTCA 59.248 40.000 8.04 1.54 35.70 3.41
579 868 5.333111 GCGATTTGAACCGGTCATATTAGTC 60.333 44.000 8.04 0.00 35.70 2.59
580 869 4.510340 GCGATTTGAACCGGTCATATTAGT 59.490 41.667 8.04 0.00 35.70 2.24
582 871 4.699637 AGCGATTTGAACCGGTCATATTA 58.300 39.130 8.04 0.00 35.70 0.98
583 872 3.541632 AGCGATTTGAACCGGTCATATT 58.458 40.909 8.04 0.00 35.70 1.28
586 875 1.468520 CAAGCGATTTGAACCGGTCAT 59.531 47.619 8.04 0.00 39.21 3.06
589 878 1.169661 TGCAAGCGATTTGAACCGGT 61.170 50.000 0.00 0.00 39.21 5.28
593 882 1.987770 CATGGTGCAAGCGATTTGAAC 59.012 47.619 4.50 3.88 43.59 3.18
596 885 2.365823 GCATGGTGCAAGCGATTTG 58.634 52.632 0.00 0.00 44.26 2.32
606 895 7.171337 CCAACCTAATTTATATTTGCATGGTGC 59.829 37.037 0.00 0.00 45.29 5.01
607 896 7.171337 GCCAACCTAATTTATATTTGCATGGTG 59.829 37.037 0.00 0.00 30.72 4.17
610 899 8.836268 ATGCCAACCTAATTTATATTTGCATG 57.164 30.769 0.00 0.00 33.70 4.06
611 900 8.873144 AGATGCCAACCTAATTTATATTTGCAT 58.127 29.630 9.36 9.36 37.27 3.96
612 901 8.143193 CAGATGCCAACCTAATTTATATTTGCA 58.857 33.333 0.00 0.00 0.00 4.08
613 902 7.599998 CCAGATGCCAACCTAATTTATATTTGC 59.400 37.037 0.00 0.00 0.00 3.68
614 903 8.641541 ACCAGATGCCAACCTAATTTATATTTG 58.358 33.333 0.00 0.00 0.00 2.32
616 905 8.181904 CACCAGATGCCAACCTAATTTATATT 57.818 34.615 0.00 0.00 0.00 1.28
638 1536 2.450609 TTAGGACGACTTCAAGCACC 57.549 50.000 0.00 0.00 0.00 5.01
639 1537 3.994392 TCATTTAGGACGACTTCAAGCAC 59.006 43.478 0.00 0.00 0.00 4.40
641 1539 6.273825 TCTATCATTTAGGACGACTTCAAGC 58.726 40.000 0.00 0.00 0.00 4.01
642 1540 7.976734 ACTTCTATCATTTAGGACGACTTCAAG 59.023 37.037 0.00 0.00 0.00 3.02
643 1541 7.837863 ACTTCTATCATTTAGGACGACTTCAA 58.162 34.615 0.00 0.00 0.00 2.69
644 1542 7.406031 ACTTCTATCATTTAGGACGACTTCA 57.594 36.000 0.00 0.00 0.00 3.02
647 1545 8.414778 CCTTTACTTCTATCATTTAGGACGACT 58.585 37.037 0.00 0.00 0.00 4.18
650 1548 6.984474 TGCCTTTACTTCTATCATTTAGGACG 59.016 38.462 0.00 0.00 0.00 4.79
656 1554 8.515414 GTTTCACTGCCTTTACTTCTATCATTT 58.485 33.333 0.00 0.00 0.00 2.32
657 1555 7.885399 AGTTTCACTGCCTTTACTTCTATCATT 59.115 33.333 0.00 0.00 0.00 2.57
658 1556 7.335422 CAGTTTCACTGCCTTTACTTCTATCAT 59.665 37.037 0.00 0.00 39.62 2.45
659 1557 6.650807 CAGTTTCACTGCCTTTACTTCTATCA 59.349 38.462 0.00 0.00 39.62 2.15
660 1558 7.066374 CAGTTTCACTGCCTTTACTTCTATC 57.934 40.000 0.00 0.00 39.62 2.08
713 2836 6.487828 TCACTACCCTAGTTAAGCTCACTAA 58.512 40.000 7.07 0.00 36.76 2.24
730 2853 8.736244 TGCTTGATTTTATTAAACCTCACTACC 58.264 33.333 0.00 0.00 0.00 3.18
761 2884 1.334779 GCAACATGCTAGCTATGCAGC 60.335 52.381 17.23 18.24 43.67 5.25
858 2990 3.060615 GTTGGCCAGGCAGAGCTG 61.061 66.667 15.19 0.00 0.00 4.24
1319 4433 2.847234 TGGGAACTGTCGGCACCT 60.847 61.111 0.00 0.00 0.00 4.00
1821 5004 1.401552 GACACAAGTGCTGCTCAAACA 59.598 47.619 0.00 0.00 0.00 2.83
1867 5058 1.593209 ACACGTACACAAGCGGGTG 60.593 57.895 8.93 8.93 43.56 4.61
1872 5063 1.855513 TACCACACACGTACACAAGC 58.144 50.000 0.00 0.00 0.00 4.01
1963 5154 7.397892 TTTTCCTACACAAACAATGTCTTGA 57.602 32.000 12.68 0.00 41.46 3.02
1969 5160 4.343814 ACCCCTTTTCCTACACAAACAATG 59.656 41.667 0.00 0.00 0.00 2.82
1970 5161 4.552674 ACCCCTTTTCCTACACAAACAAT 58.447 39.130 0.00 0.00 0.00 2.71
1971 5162 3.983821 ACCCCTTTTCCTACACAAACAA 58.016 40.909 0.00 0.00 0.00 2.83
1972 5163 3.673543 ACCCCTTTTCCTACACAAACA 57.326 42.857 0.00 0.00 0.00 2.83
1973 5164 5.566032 GCAATACCCCTTTTCCTACACAAAC 60.566 44.000 0.00 0.00 0.00 2.93
1974 5165 4.525100 GCAATACCCCTTTTCCTACACAAA 59.475 41.667 0.00 0.00 0.00 2.83
1975 5166 4.083565 GCAATACCCCTTTTCCTACACAA 58.916 43.478 0.00 0.00 0.00 3.33
1976 5167 3.332485 AGCAATACCCCTTTTCCTACACA 59.668 43.478 0.00 0.00 0.00 3.72
1977 5168 3.945921 GAGCAATACCCCTTTTCCTACAC 59.054 47.826 0.00 0.00 0.00 2.90
1978 5169 3.053917 GGAGCAATACCCCTTTTCCTACA 60.054 47.826 0.00 0.00 0.00 2.74
1979 5170 3.053917 TGGAGCAATACCCCTTTTCCTAC 60.054 47.826 0.00 0.00 0.00 3.18
1980 5171 3.194620 TGGAGCAATACCCCTTTTCCTA 58.805 45.455 0.00 0.00 0.00 2.94
1981 5172 2.000048 TGGAGCAATACCCCTTTTCCT 59.000 47.619 0.00 0.00 0.00 3.36
1982 5173 2.525105 TGGAGCAATACCCCTTTTCC 57.475 50.000 0.00 0.00 0.00 3.13
1983 5174 6.731292 ATAAATGGAGCAATACCCCTTTTC 57.269 37.500 0.00 0.00 32.12 2.29
1984 5175 6.264518 CGTATAAATGGAGCAATACCCCTTTT 59.735 38.462 0.00 0.00 33.63 2.27
1985 5176 5.768164 CGTATAAATGGAGCAATACCCCTTT 59.232 40.000 0.00 0.00 0.00 3.11
1986 5177 5.163131 ACGTATAAATGGAGCAATACCCCTT 60.163 40.000 0.00 0.00 0.00 3.95
1987 5178 4.349930 ACGTATAAATGGAGCAATACCCCT 59.650 41.667 0.00 0.00 0.00 4.79
1988 5179 4.454504 CACGTATAAATGGAGCAATACCCC 59.545 45.833 0.00 0.00 0.00 4.95
1989 5180 5.049680 CACACGTATAAATGGAGCAATACCC 60.050 44.000 0.00 0.00 0.00 3.69
1990 5181 5.560183 GCACACGTATAAATGGAGCAATACC 60.560 44.000 0.00 0.00 0.00 2.73
1991 5182 5.440685 GCACACGTATAAATGGAGCAATAC 58.559 41.667 0.00 0.00 0.00 1.89
1992 5183 4.513692 GGCACACGTATAAATGGAGCAATA 59.486 41.667 0.00 0.00 0.00 1.90
1993 5184 3.315191 GGCACACGTATAAATGGAGCAAT 59.685 43.478 0.00 0.00 0.00 3.56
1994 5185 2.680841 GGCACACGTATAAATGGAGCAA 59.319 45.455 0.00 0.00 0.00 3.91
1995 5186 2.285083 GGCACACGTATAAATGGAGCA 58.715 47.619 0.00 0.00 0.00 4.26
1996 5187 2.285083 TGGCACACGTATAAATGGAGC 58.715 47.619 0.00 0.00 0.00 4.70
2010 5201 9.845740 ATGAAACTAATATTATACAGTGGCACA 57.154 29.630 21.41 0.00 0.00 4.57
2091 5329 6.644592 GCTCTTGAATCTGAGATACATACACC 59.355 42.308 0.00 0.00 32.44 4.16
2215 5454 9.125026 ACTCCATTGGTTAATATTCTTTAGCAG 57.875 33.333 1.86 0.00 0.00 4.24
2228 5467 0.322997 CGCCCCACTCCATTGGTTAA 60.323 55.000 1.86 0.00 34.44 2.01
2249 5488 2.610859 AGGAGCCCGGTCACCAAT 60.611 61.111 0.79 0.00 0.00 3.16
2306 5570 8.978874 ACATTTCATCCTTGTATACTTGCATA 57.021 30.769 4.17 0.00 0.00 3.14
2347 5614 9.811995 CACATTTCAAGGTATTTCATCATGATT 57.188 29.630 5.16 0.00 0.00 2.57
2382 5649 7.950512 TCTCAAAGTCCATGAATTTGCTTTTA 58.049 30.769 11.04 0.00 44.04 1.52
2387 5655 6.392354 TCATTCTCAAAGTCCATGAATTTGC 58.608 36.000 11.04 0.00 44.04 3.68
2429 5697 4.765273 TCTGCGCTAATTAGTTCAATGGA 58.235 39.130 9.73 4.15 0.00 3.41
2432 5700 4.811557 GGTCTCTGCGCTAATTAGTTCAAT 59.188 41.667 9.73 0.00 0.00 2.57
2436 5704 3.887621 TGGTCTCTGCGCTAATTAGTT 57.112 42.857 9.73 0.00 0.00 2.24
2437 5705 3.195825 AGTTGGTCTCTGCGCTAATTAGT 59.804 43.478 9.73 0.00 0.00 2.24
2444 5712 1.758440 TTGGAGTTGGTCTCTGCGCT 61.758 55.000 9.73 0.00 42.40 5.92
2463 5731 1.349067 AGTCCAGTTAGCTTTCGGGT 58.651 50.000 0.00 0.00 0.00 5.28
2467 5735 6.094186 CCCTTCAAATAGTCCAGTTAGCTTTC 59.906 42.308 0.00 0.00 0.00 2.62
2535 5803 9.950680 ATGATTATTGCCAAGTAAATAGAAACG 57.049 29.630 0.00 0.00 0.00 3.60
2591 5861 7.281549 CCATCATGAACAAAGTCTCATGTCATA 59.718 37.037 0.00 0.00 45.99 2.15
2620 5890 5.163854 CGCAGTTGTAGATAGTTGGGAAAAG 60.164 44.000 0.00 0.00 0.00 2.27
2632 5904 2.009774 GGTCATTGCGCAGTTGTAGAT 58.990 47.619 11.31 0.00 0.00 1.98
2662 5934 7.609918 TGTCACCAATAGCTTGCTTAATTTCTA 59.390 33.333 0.00 0.00 0.00 2.10
2664 5936 6.528072 GTGTCACCAATAGCTTGCTTAATTTC 59.472 38.462 0.00 0.00 0.00 2.17
2681 5953 9.295825 AGATAAATCAAAAGTAATGTGTCACCA 57.704 29.630 0.00 0.00 0.00 4.17
2710 5982 8.486210 TCCAAAGAAGCATAGTCATACATTAGT 58.514 33.333 0.00 0.00 0.00 2.24
2718 5990 7.893124 AAATCATCCAAAGAAGCATAGTCAT 57.107 32.000 0.00 0.00 0.00 3.06
2719 5991 7.613022 AGAAAATCATCCAAAGAAGCATAGTCA 59.387 33.333 0.00 0.00 0.00 3.41
2720 5992 7.994194 AGAAAATCATCCAAAGAAGCATAGTC 58.006 34.615 0.00 0.00 0.00 2.59
2737 6009 6.015918 TGATTTCCCCTGCTTAAGAAAATCA 58.984 36.000 6.67 12.56 32.41 2.57
2739 6011 7.500629 AATGATTTCCCCTGCTTAAGAAAAT 57.499 32.000 6.67 2.04 32.41 1.82
2752 6024 3.953542 ACACTCCCTAATGATTTCCCC 57.046 47.619 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.