Multiple sequence alignment - TraesCS5A01G418300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G418300 chr5A 100.000 2252 0 0 1 2252 606194260 606196511 0.000000e+00 4159.0
1 TraesCS5A01G418300 chr5A 87.015 824 40 27 1485 2251 688372248 688371435 0.000000e+00 867.0
2 TraesCS5A01G418300 chr5A 91.463 328 28 0 1 328 403788359 403788032 3.410000e-123 451.0
3 TraesCS5A01G418300 chr3A 96.059 1091 26 4 410 1485 221928825 221927737 0.000000e+00 1760.0
4 TraesCS5A01G418300 chr3A 92.988 328 23 0 1 328 131040927 131040600 1.560000e-131 479.0
5 TraesCS5A01G418300 chr3A 91.793 329 26 1 1 328 36380162 36380490 7.330000e-125 457.0
6 TraesCS5A01G418300 chr6A 94.876 1093 39 5 407 1485 596656591 596655502 0.000000e+00 1692.0
7 TraesCS5A01G418300 chr6A 90.381 1102 73 9 407 1485 44892075 44890984 0.000000e+00 1417.0
8 TraesCS5A01G418300 chr6A 97.786 768 14 1 1485 2252 526321265 526322029 0.000000e+00 1321.0
9 TraesCS5A01G418300 chr6A 97.778 90 2 0 1396 1485 596687413 596687324 2.990000e-34 156.0
10 TraesCS5A01G418300 chrUn 91.117 1092 62 11 418 1485 71647206 71648286 0.000000e+00 1447.0
11 TraesCS5A01G418300 chrUn 85.366 164 18 4 420 582 94070511 94070669 4.980000e-37 165.0
12 TraesCS5A01G418300 chr2B 98.828 768 8 1 1485 2252 390949321 390950087 0.000000e+00 1367.0
13 TraesCS5A01G418300 chr2B 92.492 333 22 3 1 331 143636367 143636698 7.280000e-130 473.0
14 TraesCS5A01G418300 chr1A 98.307 768 9 2 1485 2252 34556761 34557524 0.000000e+00 1343.0
15 TraesCS5A01G418300 chr1A 87.151 179 18 5 400 575 410531363 410531539 4.910000e-47 198.0
16 TraesCS5A01G418300 chr5D 97.919 769 10 3 1485 2252 536760487 536761250 0.000000e+00 1327.0
17 TraesCS5A01G418300 chr5D 97.789 769 11 3 1484 2252 238079525 238080287 0.000000e+00 1321.0
18 TraesCS5A01G418300 chr1D 96.615 768 20 2 1485 2252 411579309 411578548 0.000000e+00 1269.0
19 TraesCS5A01G418300 chr7A 90.968 775 57 10 1485 2252 43258677 43259445 0.000000e+00 1031.0
20 TraesCS5A01G418300 chr6D 89.447 796 54 13 1485 2252 5120529 5119736 0.000000e+00 977.0
21 TraesCS5A01G418300 chr6D 86.826 167 15 7 420 582 291684024 291684187 1.780000e-41 180.0
22 TraesCS5A01G418300 chr7B 88.763 792 52 14 643 1428 746336414 746337174 0.000000e+00 935.0
23 TraesCS5A01G418300 chr7B 92.049 327 20 3 1481 1802 576429757 576430082 2.640000e-124 455.0
24 TraesCS5A01G418300 chr7B 97.561 41 1 0 1445 1485 746337159 746337199 1.120000e-08 71.3
25 TraesCS5A01G418300 chr3D 93.396 424 28 0 1005 1428 380271376 380271799 1.470000e-176 628.0
26 TraesCS5A01G418300 chr3D 89.262 149 14 1 410 556 560651162 560651014 3.820000e-43 185.0
27 TraesCS5A01G418300 chr3D 85.211 142 13 1 961 1102 380271268 380271401 3.020000e-29 139.0
28 TraesCS5A01G418300 chr3D 85.366 123 12 5 462 580 285947474 285947354 3.040000e-24 122.0
29 TraesCS5A01G418300 chr3D 97.561 41 1 0 1445 1485 380271784 380271824 1.120000e-08 71.3
30 TraesCS5A01G418300 chr2A 94.925 335 15 2 1 335 94198587 94198919 7.130000e-145 523.0
31 TraesCS5A01G418300 chr2A 94.207 328 19 0 1 328 532341033 532341360 3.340000e-138 501.0
32 TraesCS5A01G418300 chr2A 92.073 328 26 0 1 328 15582921 15583248 1.580000e-126 462.0
33 TraesCS5A01G418300 chr2A 89.222 167 16 2 420 585 22595377 22595542 8.150000e-50 207.0
34 TraesCS5A01G418300 chr1B 84.644 534 50 15 584 1102 202678996 202679512 9.280000e-139 503.0
35 TraesCS5A01G418300 chr1B 91.185 329 27 2 1 328 31547750 31548077 1.590000e-121 446.0
36 TraesCS5A01G418300 chr1B 91.667 228 19 0 1005 1232 202679487 202679714 1.300000e-82 316.0
37 TraesCS5A01G418300 chr1B 93.627 204 13 0 1225 1428 202681596 202681799 2.810000e-79 305.0
38 TraesCS5A01G418300 chr6B 92.097 329 24 2 1 328 658658611 658658938 1.580000e-126 462.0
39 TraesCS5A01G418300 chr4A 92.429 317 20 3 1485 1801 86983896 86984208 1.230000e-122 449.0
40 TraesCS5A01G418300 chr4D 87.709 179 15 5 406 582 215180558 215180385 3.790000e-48 202.0
41 TraesCS5A01G418300 chr4D 95.935 123 4 1 409 531 24104392 24104513 4.910000e-47 198.0
42 TraesCS5A01G418300 chr7D 92.424 132 7 3 409 538 309545748 309545878 3.820000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G418300 chr5A 606194260 606196511 2251 False 4159.000000 4159 100.000000 1 2252 1 chr5A.!!$F1 2251
1 TraesCS5A01G418300 chr5A 688371435 688372248 813 True 867.000000 867 87.015000 1485 2251 1 chr5A.!!$R2 766
2 TraesCS5A01G418300 chr3A 221927737 221928825 1088 True 1760.000000 1760 96.059000 410 1485 1 chr3A.!!$R2 1075
3 TraesCS5A01G418300 chr6A 596655502 596656591 1089 True 1692.000000 1692 94.876000 407 1485 1 chr6A.!!$R2 1078
4 TraesCS5A01G418300 chr6A 44890984 44892075 1091 True 1417.000000 1417 90.381000 407 1485 1 chr6A.!!$R1 1078
5 TraesCS5A01G418300 chr6A 526321265 526322029 764 False 1321.000000 1321 97.786000 1485 2252 1 chr6A.!!$F1 767
6 TraesCS5A01G418300 chrUn 71647206 71648286 1080 False 1447.000000 1447 91.117000 418 1485 1 chrUn.!!$F1 1067
7 TraesCS5A01G418300 chr2B 390949321 390950087 766 False 1367.000000 1367 98.828000 1485 2252 1 chr2B.!!$F2 767
8 TraesCS5A01G418300 chr1A 34556761 34557524 763 False 1343.000000 1343 98.307000 1485 2252 1 chr1A.!!$F1 767
9 TraesCS5A01G418300 chr5D 536760487 536761250 763 False 1327.000000 1327 97.919000 1485 2252 1 chr5D.!!$F2 767
10 TraesCS5A01G418300 chr5D 238079525 238080287 762 False 1321.000000 1321 97.789000 1484 2252 1 chr5D.!!$F1 768
11 TraesCS5A01G418300 chr1D 411578548 411579309 761 True 1269.000000 1269 96.615000 1485 2252 1 chr1D.!!$R1 767
12 TraesCS5A01G418300 chr7A 43258677 43259445 768 False 1031.000000 1031 90.968000 1485 2252 1 chr7A.!!$F1 767
13 TraesCS5A01G418300 chr6D 5119736 5120529 793 True 977.000000 977 89.447000 1485 2252 1 chr6D.!!$R1 767
14 TraesCS5A01G418300 chr7B 746336414 746337199 785 False 503.150000 935 93.162000 643 1485 2 chr7B.!!$F2 842
15 TraesCS5A01G418300 chr3D 380271268 380271824 556 False 279.433333 628 92.056000 961 1485 3 chr3D.!!$F1 524
16 TraesCS5A01G418300 chr1B 202678996 202681799 2803 False 374.666667 503 89.979333 584 1428 3 chr1B.!!$F2 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 557 0.038435 TCGTTCGCGGGTGACAATTA 60.038 50.0 6.13 0.0 41.7 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 3391 1.798813 GTCCTAGGTGTGCAAAACGAG 59.201 52.381 9.08 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.553881 TTTAAGACTTGTATATTCCTGCAGC 57.446 36.000 8.66 0.00 0.00 5.25
25 26 4.760530 AGACTTGTATATTCCTGCAGCA 57.239 40.909 8.66 0.00 0.00 4.41
26 27 4.701765 AGACTTGTATATTCCTGCAGCAG 58.298 43.478 16.23 16.23 0.00 4.24
27 28 4.163078 AGACTTGTATATTCCTGCAGCAGT 59.837 41.667 21.26 5.44 0.00 4.40
28 29 4.194640 ACTTGTATATTCCTGCAGCAGTG 58.805 43.478 21.26 12.48 0.00 3.66
29 30 3.198409 TGTATATTCCTGCAGCAGTGG 57.802 47.619 21.26 8.04 0.00 4.00
30 31 2.771372 TGTATATTCCTGCAGCAGTGGA 59.229 45.455 21.26 10.49 0.00 4.02
31 32 2.634815 ATATTCCTGCAGCAGTGGAG 57.365 50.000 21.26 5.86 41.71 3.86
32 33 1.571955 TATTCCTGCAGCAGTGGAGA 58.428 50.000 21.26 8.27 44.77 3.71
33 34 0.917533 ATTCCTGCAGCAGTGGAGAT 59.082 50.000 21.26 7.00 44.77 2.75
34 35 0.694771 TTCCTGCAGCAGTGGAGATT 59.305 50.000 21.26 0.00 44.77 2.40
35 36 1.571955 TCCTGCAGCAGTGGAGATTA 58.428 50.000 21.26 0.00 44.77 1.75
36 37 2.121948 TCCTGCAGCAGTGGAGATTAT 58.878 47.619 21.26 0.00 44.77 1.28
37 38 2.507058 TCCTGCAGCAGTGGAGATTATT 59.493 45.455 21.26 0.00 44.77 1.40
38 39 2.617308 CCTGCAGCAGTGGAGATTATTG 59.383 50.000 21.26 0.00 44.77 1.90
39 40 3.538591 CTGCAGCAGTGGAGATTATTGA 58.461 45.455 14.90 0.00 44.77 2.57
40 41 3.273434 TGCAGCAGTGGAGATTATTGAC 58.727 45.455 0.00 0.00 0.00 3.18
41 42 3.054875 TGCAGCAGTGGAGATTATTGACT 60.055 43.478 0.00 0.00 0.00 3.41
42 43 4.162131 TGCAGCAGTGGAGATTATTGACTA 59.838 41.667 0.00 0.00 0.00 2.59
43 44 5.118990 GCAGCAGTGGAGATTATTGACTAA 58.881 41.667 0.00 0.00 0.00 2.24
44 45 5.586243 GCAGCAGTGGAGATTATTGACTAAA 59.414 40.000 0.00 0.00 0.00 1.85
45 46 6.238320 GCAGCAGTGGAGATTATTGACTAAAG 60.238 42.308 0.00 0.00 0.00 1.85
46 47 7.044181 CAGCAGTGGAGATTATTGACTAAAGA 58.956 38.462 0.00 0.00 0.00 2.52
47 48 7.224362 CAGCAGTGGAGATTATTGACTAAAGAG 59.776 40.741 0.00 0.00 0.00 2.85
48 49 6.481644 GCAGTGGAGATTATTGACTAAAGAGG 59.518 42.308 0.00 0.00 0.00 3.69
49 50 7.633772 GCAGTGGAGATTATTGACTAAAGAGGA 60.634 40.741 0.00 0.00 0.00 3.71
50 51 7.925483 CAGTGGAGATTATTGACTAAAGAGGAG 59.075 40.741 0.00 0.00 0.00 3.69
51 52 7.070571 AGTGGAGATTATTGACTAAAGAGGAGG 59.929 40.741 0.00 0.00 0.00 4.30
52 53 7.070074 GTGGAGATTATTGACTAAAGAGGAGGA 59.930 40.741 0.00 0.00 0.00 3.71
53 54 7.070074 TGGAGATTATTGACTAAAGAGGAGGAC 59.930 40.741 0.00 0.00 0.00 3.85
54 55 7.070074 GGAGATTATTGACTAAAGAGGAGGACA 59.930 40.741 0.00 0.00 0.00 4.02
55 56 8.560124 AGATTATTGACTAAAGAGGAGGACAT 57.440 34.615 0.00 0.00 0.00 3.06
56 57 8.428063 AGATTATTGACTAAAGAGGAGGACATG 58.572 37.037 0.00 0.00 0.00 3.21
57 58 4.826274 TTGACTAAAGAGGAGGACATGG 57.174 45.455 0.00 0.00 0.00 3.66
58 59 4.061131 TGACTAAAGAGGAGGACATGGA 57.939 45.455 0.00 0.00 0.00 3.41
59 60 4.624913 TGACTAAAGAGGAGGACATGGAT 58.375 43.478 0.00 0.00 0.00 3.41
60 61 4.406972 TGACTAAAGAGGAGGACATGGATG 59.593 45.833 0.00 0.00 0.00 3.51
61 62 2.725221 AAAGAGGAGGACATGGATGC 57.275 50.000 0.00 0.00 0.00 3.91
62 63 1.588239 AAGAGGAGGACATGGATGCA 58.412 50.000 0.00 0.00 0.00 3.96
63 64 1.817087 AGAGGAGGACATGGATGCAT 58.183 50.000 0.00 0.00 0.00 3.96
64 65 2.133520 AGAGGAGGACATGGATGCATT 58.866 47.619 0.00 0.00 0.00 3.56
65 66 2.512896 AGAGGAGGACATGGATGCATTT 59.487 45.455 0.00 0.00 0.00 2.32
66 67 2.621998 GAGGAGGACATGGATGCATTTG 59.378 50.000 0.00 2.04 0.00 2.32
67 68 2.242965 AGGAGGACATGGATGCATTTGA 59.757 45.455 0.00 0.00 0.00 2.69
68 69 3.117246 AGGAGGACATGGATGCATTTGAT 60.117 43.478 0.00 0.00 0.00 2.57
69 70 3.005472 GGAGGACATGGATGCATTTGATG 59.995 47.826 0.00 6.33 0.00 3.07
88 89 2.016961 CCATGTTGGCGAAGATCCG 58.983 57.895 0.00 0.00 0.00 4.18
89 90 0.461870 CCATGTTGGCGAAGATCCGA 60.462 55.000 0.00 0.00 0.00 4.55
90 91 1.368641 CATGTTGGCGAAGATCCGAA 58.631 50.000 0.00 0.00 0.00 4.30
91 92 1.737236 CATGTTGGCGAAGATCCGAAA 59.263 47.619 0.00 0.00 0.00 3.46
92 93 2.107950 TGTTGGCGAAGATCCGAAAT 57.892 45.000 0.00 0.00 0.00 2.17
93 94 2.432444 TGTTGGCGAAGATCCGAAATT 58.568 42.857 0.00 0.00 0.00 1.82
94 95 2.418628 TGTTGGCGAAGATCCGAAATTC 59.581 45.455 0.00 0.00 0.00 2.17
95 96 2.678336 GTTGGCGAAGATCCGAAATTCT 59.322 45.455 0.00 0.00 0.00 2.40
96 97 2.279741 TGGCGAAGATCCGAAATTCTG 58.720 47.619 0.00 0.00 0.00 3.02
97 98 1.003438 GGCGAAGATCCGAAATTCTGC 60.003 52.381 0.00 0.00 0.00 4.26
98 99 1.936547 GCGAAGATCCGAAATTCTGCT 59.063 47.619 0.00 0.00 0.00 4.24
99 100 3.123804 GCGAAGATCCGAAATTCTGCTA 58.876 45.455 0.00 0.00 0.00 3.49
100 101 3.743396 GCGAAGATCCGAAATTCTGCTAT 59.257 43.478 0.00 0.00 0.00 2.97
101 102 4.143221 GCGAAGATCCGAAATTCTGCTATC 60.143 45.833 0.00 0.00 0.00 2.08
102 103 5.226396 CGAAGATCCGAAATTCTGCTATCT 58.774 41.667 0.00 0.00 0.00 1.98
103 104 5.694006 CGAAGATCCGAAATTCTGCTATCTT 59.306 40.000 0.00 0.00 35.50 2.40
104 105 6.128956 CGAAGATCCGAAATTCTGCTATCTTC 60.129 42.308 17.12 17.12 41.92 2.87
105 106 6.166984 AGATCCGAAATTCTGCTATCTTCA 57.833 37.500 0.00 0.00 0.00 3.02
106 107 6.767456 AGATCCGAAATTCTGCTATCTTCAT 58.233 36.000 0.00 0.00 0.00 2.57
107 108 6.873076 AGATCCGAAATTCTGCTATCTTCATC 59.127 38.462 0.00 0.00 0.00 2.92
108 109 5.300752 TCCGAAATTCTGCTATCTTCATCC 58.699 41.667 0.00 0.00 0.00 3.51
109 110 5.070981 TCCGAAATTCTGCTATCTTCATCCT 59.929 40.000 0.00 0.00 0.00 3.24
110 111 5.762218 CCGAAATTCTGCTATCTTCATCCTT 59.238 40.000 0.00 0.00 0.00 3.36
111 112 6.073331 CCGAAATTCTGCTATCTTCATCCTTC 60.073 42.308 0.00 0.00 0.00 3.46
112 113 6.073331 CGAAATTCTGCTATCTTCATCCTTCC 60.073 42.308 0.00 0.00 0.00 3.46
113 114 5.901413 ATTCTGCTATCTTCATCCTTCCA 57.099 39.130 0.00 0.00 0.00 3.53
114 115 5.698741 TTCTGCTATCTTCATCCTTCCAA 57.301 39.130 0.00 0.00 0.00 3.53
115 116 5.698741 TCTGCTATCTTCATCCTTCCAAA 57.301 39.130 0.00 0.00 0.00 3.28
116 117 5.431765 TCTGCTATCTTCATCCTTCCAAAC 58.568 41.667 0.00 0.00 0.00 2.93
117 118 4.526970 TGCTATCTTCATCCTTCCAAACC 58.473 43.478 0.00 0.00 0.00 3.27
118 119 4.018506 TGCTATCTTCATCCTTCCAAACCA 60.019 41.667 0.00 0.00 0.00 3.67
119 120 4.949856 GCTATCTTCATCCTTCCAAACCAA 59.050 41.667 0.00 0.00 0.00 3.67
120 121 5.067023 GCTATCTTCATCCTTCCAAACCAAG 59.933 44.000 0.00 0.00 0.00 3.61
121 122 3.157087 TCTTCATCCTTCCAAACCAAGC 58.843 45.455 0.00 0.00 0.00 4.01
122 123 1.533625 TCATCCTTCCAAACCAAGCG 58.466 50.000 0.00 0.00 0.00 4.68
123 124 0.527565 CATCCTTCCAAACCAAGCGG 59.472 55.000 0.00 0.00 38.77 5.52
124 125 0.404040 ATCCTTCCAAACCAAGCGGA 59.596 50.000 0.00 0.00 35.59 5.54
125 126 0.536460 TCCTTCCAAACCAAGCGGAC 60.536 55.000 0.00 0.00 35.59 4.79
126 127 1.524008 CCTTCCAAACCAAGCGGACC 61.524 60.000 0.00 0.00 35.59 4.46
127 128 1.524008 CTTCCAAACCAAGCGGACCC 61.524 60.000 0.00 0.00 35.59 4.46
128 129 3.361977 CCAAACCAAGCGGACCCG 61.362 66.667 3.73 3.73 43.09 5.28
129 130 2.593436 CAAACCAAGCGGACCCGT 60.593 61.111 10.37 0.00 42.09 5.28
130 131 1.301874 CAAACCAAGCGGACCCGTA 60.302 57.895 10.37 0.00 42.09 4.02
131 132 1.004200 AAACCAAGCGGACCCGTAG 60.004 57.895 10.37 0.72 42.09 3.51
132 133 1.474332 AAACCAAGCGGACCCGTAGA 61.474 55.000 10.37 0.00 42.09 2.59
133 134 2.163601 AACCAAGCGGACCCGTAGAC 62.164 60.000 10.37 0.00 42.09 2.59
134 135 2.202570 CAAGCGGACCCGTAGACG 60.203 66.667 10.37 0.00 42.09 4.18
135 136 2.674380 AAGCGGACCCGTAGACGT 60.674 61.111 10.37 0.00 42.09 4.34
136 137 2.694760 AAGCGGACCCGTAGACGTC 61.695 63.158 7.70 7.70 42.09 4.34
137 138 4.527157 GCGGACCCGTAGACGTCG 62.527 72.222 10.46 0.00 42.09 5.12
138 139 4.527157 CGGACCCGTAGACGTCGC 62.527 72.222 10.46 6.51 37.74 5.19
139 140 3.130160 GGACCCGTAGACGTCGCT 61.130 66.667 10.46 0.00 37.74 4.93
140 141 2.099831 GACCCGTAGACGTCGCTG 59.900 66.667 10.46 3.42 37.74 5.18
141 142 4.112341 ACCCGTAGACGTCGCTGC 62.112 66.667 10.46 0.00 37.74 5.25
144 145 2.501222 CGTAGACGTCGCTGCGTT 60.501 61.111 22.48 7.61 45.79 4.84
145 146 2.764925 CGTAGACGTCGCTGCGTTG 61.765 63.158 22.48 17.11 45.79 4.10
146 147 2.803670 TAGACGTCGCTGCGTTGC 60.804 61.111 22.48 12.20 45.79 4.17
152 153 4.961511 TCGCTGCGTTGCCTCGTT 62.962 61.111 22.48 0.00 0.00 3.85
153 154 3.109547 CGCTGCGTTGCCTCGTTA 61.110 61.111 14.93 0.00 0.00 3.18
154 155 2.452813 CGCTGCGTTGCCTCGTTAT 61.453 57.895 14.93 0.00 0.00 1.89
155 156 1.348594 GCTGCGTTGCCTCGTTATC 59.651 57.895 0.00 0.00 0.00 1.75
156 157 1.084370 GCTGCGTTGCCTCGTTATCT 61.084 55.000 0.00 0.00 0.00 1.98
157 158 1.359848 CTGCGTTGCCTCGTTATCTT 58.640 50.000 0.15 0.00 0.00 2.40
158 159 2.536365 CTGCGTTGCCTCGTTATCTTA 58.464 47.619 0.15 0.00 0.00 2.10
159 160 3.123804 CTGCGTTGCCTCGTTATCTTAT 58.876 45.455 0.15 0.00 0.00 1.73
160 161 3.120792 TGCGTTGCCTCGTTATCTTATC 58.879 45.455 0.15 0.00 0.00 1.75
161 162 2.475487 GCGTTGCCTCGTTATCTTATCC 59.525 50.000 0.15 0.00 0.00 2.59
162 163 3.799232 GCGTTGCCTCGTTATCTTATCCT 60.799 47.826 0.15 0.00 0.00 3.24
163 164 3.982058 CGTTGCCTCGTTATCTTATCCTC 59.018 47.826 0.00 0.00 0.00 3.71
164 165 4.261656 CGTTGCCTCGTTATCTTATCCTCT 60.262 45.833 0.00 0.00 0.00 3.69
165 166 5.602628 GTTGCCTCGTTATCTTATCCTCTT 58.397 41.667 0.00 0.00 0.00 2.85
166 167 5.455056 TGCCTCGTTATCTTATCCTCTTC 57.545 43.478 0.00 0.00 0.00 2.87
167 168 4.281182 TGCCTCGTTATCTTATCCTCTTCC 59.719 45.833 0.00 0.00 0.00 3.46
168 169 4.616373 GCCTCGTTATCTTATCCTCTTCCG 60.616 50.000 0.00 0.00 0.00 4.30
169 170 4.082679 CCTCGTTATCTTATCCTCTTCCGG 60.083 50.000 0.00 0.00 0.00 5.14
170 171 3.255149 TCGTTATCTTATCCTCTTCCGGC 59.745 47.826 0.00 0.00 0.00 6.13
171 172 3.614390 CGTTATCTTATCCTCTTCCGGCC 60.614 52.174 0.00 0.00 0.00 6.13
172 173 2.407340 ATCTTATCCTCTTCCGGCCT 57.593 50.000 0.00 0.00 0.00 5.19
173 174 1.414158 TCTTATCCTCTTCCGGCCTG 58.586 55.000 0.00 0.00 0.00 4.85
174 175 0.250081 CTTATCCTCTTCCGGCCTGC 60.250 60.000 0.00 0.00 0.00 4.85
175 176 2.028125 TTATCCTCTTCCGGCCTGCG 62.028 60.000 0.00 0.00 0.00 5.18
187 188 3.112075 CCTGCGTGCCGTGTACTG 61.112 66.667 0.00 0.00 0.00 2.74
188 189 3.112075 CTGCGTGCCGTGTACTGG 61.112 66.667 0.00 0.00 0.00 4.00
195 196 3.000819 CCGTGTACTGGCCTGGGA 61.001 66.667 14.82 0.00 0.00 4.37
196 197 2.579201 CGTGTACTGGCCTGGGAG 59.421 66.667 14.82 0.00 0.00 4.30
197 198 2.269241 GTGTACTGGCCTGGGAGC 59.731 66.667 14.82 1.78 0.00 4.70
205 206 3.324713 GCCTGGGAGCCATGTACT 58.675 61.111 0.00 0.00 30.82 2.73
206 207 1.147153 GCCTGGGAGCCATGTACTC 59.853 63.158 0.00 4.74 30.82 2.59
207 208 1.626356 GCCTGGGAGCCATGTACTCA 61.626 60.000 13.30 0.53 35.79 3.41
208 209 0.911769 CCTGGGAGCCATGTACTCAA 59.088 55.000 13.30 2.67 35.79 3.02
209 210 1.281867 CCTGGGAGCCATGTACTCAAA 59.718 52.381 13.30 2.38 35.79 2.69
210 211 2.359900 CTGGGAGCCATGTACTCAAAC 58.640 52.381 13.30 5.43 35.79 2.93
211 212 1.702401 TGGGAGCCATGTACTCAAACA 59.298 47.619 13.30 7.42 35.79 2.83
212 213 2.308570 TGGGAGCCATGTACTCAAACAT 59.691 45.455 13.30 0.00 40.75 2.71
213 214 3.245229 TGGGAGCCATGTACTCAAACATT 60.245 43.478 13.30 0.00 38.01 2.71
214 215 3.378427 GGGAGCCATGTACTCAAACATTC 59.622 47.826 13.30 0.00 38.01 2.67
215 216 3.378427 GGAGCCATGTACTCAAACATTCC 59.622 47.826 13.30 0.00 38.01 3.01
216 217 4.265073 GAGCCATGTACTCAAACATTCCT 58.735 43.478 7.85 0.00 38.01 3.36
217 218 4.265073 AGCCATGTACTCAAACATTCCTC 58.735 43.478 0.00 0.00 38.01 3.71
218 219 4.018960 AGCCATGTACTCAAACATTCCTCT 60.019 41.667 0.00 0.00 38.01 3.69
219 220 4.702131 GCCATGTACTCAAACATTCCTCTT 59.298 41.667 0.00 0.00 38.01 2.85
220 221 5.163713 GCCATGTACTCAAACATTCCTCTTC 60.164 44.000 0.00 0.00 38.01 2.87
221 222 5.063944 CCATGTACTCAAACATTCCTCTTCG 59.936 44.000 0.00 0.00 38.01 3.79
222 223 5.209818 TGTACTCAAACATTCCTCTTCGT 57.790 39.130 0.00 0.00 0.00 3.85
223 224 4.988540 TGTACTCAAACATTCCTCTTCGTG 59.011 41.667 0.00 0.00 0.00 4.35
224 225 4.073293 ACTCAAACATTCCTCTTCGTGT 57.927 40.909 0.00 0.00 0.00 4.49
225 226 4.451900 ACTCAAACATTCCTCTTCGTGTT 58.548 39.130 0.00 0.00 36.43 3.32
226 227 4.511826 ACTCAAACATTCCTCTTCGTGTTC 59.488 41.667 0.00 0.00 33.99 3.18
227 228 4.703897 TCAAACATTCCTCTTCGTGTTCT 58.296 39.130 0.00 0.00 33.99 3.01
228 229 4.511454 TCAAACATTCCTCTTCGTGTTCTG 59.489 41.667 0.00 0.00 33.99 3.02
229 230 3.045601 ACATTCCTCTTCGTGTTCTGG 57.954 47.619 0.00 0.00 0.00 3.86
230 231 1.734465 CATTCCTCTTCGTGTTCTGGC 59.266 52.381 0.00 0.00 0.00 4.85
231 232 1.048601 TTCCTCTTCGTGTTCTGGCT 58.951 50.000 0.00 0.00 0.00 4.75
232 233 1.048601 TCCTCTTCGTGTTCTGGCTT 58.951 50.000 0.00 0.00 0.00 4.35
233 234 1.151668 CCTCTTCGTGTTCTGGCTTG 58.848 55.000 0.00 0.00 0.00 4.01
234 235 1.270305 CCTCTTCGTGTTCTGGCTTGA 60.270 52.381 0.00 0.00 0.00 3.02
235 236 2.613977 CCTCTTCGTGTTCTGGCTTGAT 60.614 50.000 0.00 0.00 0.00 2.57
236 237 3.368427 CCTCTTCGTGTTCTGGCTTGATA 60.368 47.826 0.00 0.00 0.00 2.15
237 238 3.585862 TCTTCGTGTTCTGGCTTGATAC 58.414 45.455 0.00 0.00 0.00 2.24
238 239 3.258372 TCTTCGTGTTCTGGCTTGATACT 59.742 43.478 0.00 0.00 0.00 2.12
239 240 3.678056 TCGTGTTCTGGCTTGATACTT 57.322 42.857 0.00 0.00 0.00 2.24
240 241 4.002906 TCGTGTTCTGGCTTGATACTTT 57.997 40.909 0.00 0.00 0.00 2.66
241 242 3.745975 TCGTGTTCTGGCTTGATACTTTG 59.254 43.478 0.00 0.00 0.00 2.77
242 243 3.120199 CGTGTTCTGGCTTGATACTTTGG 60.120 47.826 0.00 0.00 0.00 3.28
243 244 3.821033 GTGTTCTGGCTTGATACTTTGGT 59.179 43.478 0.00 0.00 0.00 3.67
244 245 5.001232 GTGTTCTGGCTTGATACTTTGGTA 58.999 41.667 0.00 0.00 0.00 3.25
245 246 5.648092 GTGTTCTGGCTTGATACTTTGGTAT 59.352 40.000 0.00 0.00 40.91 2.73
246 247 6.151144 GTGTTCTGGCTTGATACTTTGGTATT 59.849 38.462 0.00 0.00 38.60 1.89
247 248 6.719370 TGTTCTGGCTTGATACTTTGGTATTT 59.281 34.615 0.00 0.00 38.60 1.40
248 249 7.094377 TGTTCTGGCTTGATACTTTGGTATTTC 60.094 37.037 0.00 0.00 38.60 2.17
249 250 6.721318 TCTGGCTTGATACTTTGGTATTTCT 58.279 36.000 0.00 0.00 38.60 2.52
250 251 6.599244 TCTGGCTTGATACTTTGGTATTTCTG 59.401 38.462 0.00 0.00 38.60 3.02
251 252 6.245408 TGGCTTGATACTTTGGTATTTCTGT 58.755 36.000 0.00 0.00 38.60 3.41
252 253 6.150976 TGGCTTGATACTTTGGTATTTCTGTG 59.849 38.462 0.00 0.00 38.60 3.66
253 254 6.030228 GCTTGATACTTTGGTATTTCTGTGC 58.970 40.000 0.00 0.00 38.60 4.57
254 255 6.127897 GCTTGATACTTTGGTATTTCTGTGCT 60.128 38.462 0.00 0.00 38.60 4.40
255 256 6.741992 TGATACTTTGGTATTTCTGTGCTG 57.258 37.500 0.00 0.00 38.60 4.41
256 257 5.647658 TGATACTTTGGTATTTCTGTGCTGG 59.352 40.000 0.00 0.00 38.60 4.85
257 258 3.832527 ACTTTGGTATTTCTGTGCTGGT 58.167 40.909 0.00 0.00 0.00 4.00
258 259 4.215109 ACTTTGGTATTTCTGTGCTGGTT 58.785 39.130 0.00 0.00 0.00 3.67
259 260 4.037923 ACTTTGGTATTTCTGTGCTGGTTG 59.962 41.667 0.00 0.00 0.00 3.77
260 261 3.222173 TGGTATTTCTGTGCTGGTTGT 57.778 42.857 0.00 0.00 0.00 3.32
261 262 3.146066 TGGTATTTCTGTGCTGGTTGTC 58.854 45.455 0.00 0.00 0.00 3.18
262 263 3.181445 TGGTATTTCTGTGCTGGTTGTCT 60.181 43.478 0.00 0.00 0.00 3.41
263 264 3.189287 GGTATTTCTGTGCTGGTTGTCTG 59.811 47.826 0.00 0.00 0.00 3.51
264 265 1.679139 TTTCTGTGCTGGTTGTCTGG 58.321 50.000 0.00 0.00 0.00 3.86
265 266 0.179020 TTCTGTGCTGGTTGTCTGGG 60.179 55.000 0.00 0.00 0.00 4.45
266 267 1.149174 CTGTGCTGGTTGTCTGGGT 59.851 57.895 0.00 0.00 0.00 4.51
267 268 0.886490 CTGTGCTGGTTGTCTGGGTC 60.886 60.000 0.00 0.00 0.00 4.46
268 269 1.600916 GTGCTGGTTGTCTGGGTCC 60.601 63.158 0.00 0.00 0.00 4.46
269 270 1.770110 TGCTGGTTGTCTGGGTCCT 60.770 57.895 0.00 0.00 0.00 3.85
270 271 1.352622 TGCTGGTTGTCTGGGTCCTT 61.353 55.000 0.00 0.00 0.00 3.36
271 272 0.890996 GCTGGTTGTCTGGGTCCTTG 60.891 60.000 0.00 0.00 0.00 3.61
272 273 0.474184 CTGGTTGTCTGGGTCCTTGT 59.526 55.000 0.00 0.00 0.00 3.16
273 274 0.923358 TGGTTGTCTGGGTCCTTGTT 59.077 50.000 0.00 0.00 0.00 2.83
274 275 2.105821 CTGGTTGTCTGGGTCCTTGTTA 59.894 50.000 0.00 0.00 0.00 2.41
275 276 2.510382 TGGTTGTCTGGGTCCTTGTTAA 59.490 45.455 0.00 0.00 0.00 2.01
276 277 2.882761 GGTTGTCTGGGTCCTTGTTAAC 59.117 50.000 0.00 0.00 0.00 2.01
277 278 3.434596 GGTTGTCTGGGTCCTTGTTAACT 60.435 47.826 7.22 0.00 0.00 2.24
278 279 3.764237 TGTCTGGGTCCTTGTTAACTC 57.236 47.619 7.22 0.00 0.00 3.01
279 280 3.314693 TGTCTGGGTCCTTGTTAACTCT 58.685 45.455 7.22 0.00 0.00 3.24
280 281 3.071023 TGTCTGGGTCCTTGTTAACTCTG 59.929 47.826 7.22 0.00 0.00 3.35
281 282 2.038557 TCTGGGTCCTTGTTAACTCTGC 59.961 50.000 7.22 0.00 0.00 4.26
282 283 1.073284 TGGGTCCTTGTTAACTCTGCC 59.927 52.381 7.22 3.15 0.00 4.85
283 284 1.351350 GGGTCCTTGTTAACTCTGCCT 59.649 52.381 7.22 0.00 0.00 4.75
284 285 2.427506 GGTCCTTGTTAACTCTGCCTG 58.572 52.381 7.22 0.00 0.00 4.85
285 286 2.427506 GTCCTTGTTAACTCTGCCTGG 58.572 52.381 7.22 0.00 0.00 4.45
286 287 2.054799 TCCTTGTTAACTCTGCCTGGT 58.945 47.619 7.22 0.00 0.00 4.00
287 288 2.154462 CCTTGTTAACTCTGCCTGGTG 58.846 52.381 7.22 0.00 0.00 4.17
288 289 2.154462 CTTGTTAACTCTGCCTGGTGG 58.846 52.381 7.22 0.00 0.00 4.61
309 310 4.895961 GGCTTTATCTATAAAGTCGGGCT 58.104 43.478 18.85 0.00 46.78 5.19
310 311 6.034161 GGCTTTATCTATAAAGTCGGGCTA 57.966 41.667 18.85 0.00 46.78 3.93
311 312 6.641474 GGCTTTATCTATAAAGTCGGGCTAT 58.359 40.000 18.85 0.00 46.78 2.97
312 313 6.535508 GGCTTTATCTATAAAGTCGGGCTATG 59.464 42.308 18.85 0.00 46.78 2.23
313 314 7.321153 GCTTTATCTATAAAGTCGGGCTATGA 58.679 38.462 18.85 0.00 46.78 2.15
314 315 7.275999 GCTTTATCTATAAAGTCGGGCTATGAC 59.724 40.741 18.85 0.00 46.78 3.06
315 316 5.662674 ATCTATAAAGTCGGGCTATGACC 57.337 43.478 0.00 0.00 37.04 4.02
316 317 4.737578 TCTATAAAGTCGGGCTATGACCT 58.262 43.478 0.00 0.00 37.04 3.85
317 318 5.145564 TCTATAAAGTCGGGCTATGACCTT 58.854 41.667 0.00 0.00 37.04 3.50
318 319 4.772886 ATAAAGTCGGGCTATGACCTTT 57.227 40.909 0.00 0.00 37.04 3.11
319 320 3.434940 AAAGTCGGGCTATGACCTTTT 57.565 42.857 0.00 0.00 37.04 2.27
320 321 2.693267 AGTCGGGCTATGACCTTTTC 57.307 50.000 2.33 0.00 37.04 2.29
321 322 2.188817 AGTCGGGCTATGACCTTTTCT 58.811 47.619 2.33 0.00 37.04 2.52
322 323 2.168728 AGTCGGGCTATGACCTTTTCTC 59.831 50.000 2.33 0.00 37.04 2.87
323 324 2.168728 GTCGGGCTATGACCTTTTCTCT 59.831 50.000 0.00 0.00 0.00 3.10
324 325 3.383825 GTCGGGCTATGACCTTTTCTCTA 59.616 47.826 0.00 0.00 0.00 2.43
325 326 4.028131 TCGGGCTATGACCTTTTCTCTAA 58.972 43.478 0.00 0.00 0.00 2.10
326 327 4.468510 TCGGGCTATGACCTTTTCTCTAAA 59.531 41.667 0.00 0.00 0.00 1.85
327 328 5.046159 TCGGGCTATGACCTTTTCTCTAAAA 60.046 40.000 0.00 0.00 33.58 1.52
329 330 5.066634 GGGCTATGACCTTTTCTCTAAAAGC 59.933 44.000 5.31 0.00 46.84 3.51
330 331 5.648092 GGCTATGACCTTTTCTCTAAAAGCA 59.352 40.000 5.31 0.76 46.84 3.91
331 332 6.151144 GGCTATGACCTTTTCTCTAAAAGCAA 59.849 38.462 5.31 0.00 46.84 3.91
332 333 7.309194 GGCTATGACCTTTTCTCTAAAAGCAAA 60.309 37.037 5.31 0.00 46.84 3.68
333 334 8.082242 GCTATGACCTTTTCTCTAAAAGCAAAA 58.918 33.333 5.31 0.00 46.84 2.44
334 335 9.965824 CTATGACCTTTTCTCTAAAAGCAAAAA 57.034 29.630 5.31 0.00 46.84 1.94
336 337 8.647143 TGACCTTTTCTCTAAAAGCAAAAATG 57.353 30.769 5.31 0.00 46.84 2.32
337 338 7.224557 TGACCTTTTCTCTAAAAGCAAAAATGC 59.775 33.333 5.31 0.00 46.84 3.56
338 339 7.275183 ACCTTTTCTCTAAAAGCAAAAATGCT 58.725 30.769 0.00 0.00 46.84 3.79
339 340 7.225341 ACCTTTTCTCTAAAAGCAAAAATGCTG 59.775 33.333 3.80 0.00 46.84 4.41
340 341 7.225341 CCTTTTCTCTAAAAGCAAAAATGCTGT 59.775 33.333 3.80 0.00 46.84 4.40
341 342 9.248291 CTTTTCTCTAAAAGCAAAAATGCTGTA 57.752 29.630 3.80 0.00 45.54 2.74
342 343 9.593134 TTTTCTCTAAAAGCAAAAATGCTGTAA 57.407 25.926 3.80 0.00 45.54 2.41
343 344 9.593134 TTTCTCTAAAAGCAAAAATGCTGTAAA 57.407 25.926 3.80 0.00 45.54 2.01
344 345 9.593134 TTCTCTAAAAGCAAAAATGCTGTAAAA 57.407 25.926 3.80 0.00 45.54 1.52
345 346 9.593134 TCTCTAAAAGCAAAAATGCTGTAAAAA 57.407 25.926 3.80 0.00 45.54 1.94
367 368 7.958053 AAAACTAGTTTGCTTATCTACGTGT 57.042 32.000 21.22 0.00 32.36 4.49
368 369 9.480053 AAAAACTAGTTTGCTTATCTACGTGTA 57.520 29.630 21.22 0.00 32.36 2.90
369 370 8.684973 AAACTAGTTTGCTTATCTACGTGTAG 57.315 34.615 19.94 0.47 34.56 2.74
370 371 7.388460 ACTAGTTTGCTTATCTACGTGTAGT 57.612 36.000 0.00 0.00 34.84 2.73
371 372 7.249147 ACTAGTTTGCTTATCTACGTGTAGTG 58.751 38.462 0.00 0.00 34.84 2.74
372 373 6.263516 AGTTTGCTTATCTACGTGTAGTGA 57.736 37.500 0.00 0.00 34.84 3.41
373 374 6.864342 AGTTTGCTTATCTACGTGTAGTGAT 58.136 36.000 0.00 0.00 34.84 3.06
374 375 6.752351 AGTTTGCTTATCTACGTGTAGTGATG 59.248 38.462 0.00 1.33 34.84 3.07
375 376 5.183014 TGCTTATCTACGTGTAGTGATGG 57.817 43.478 0.00 0.00 34.84 3.51
376 377 4.037565 TGCTTATCTACGTGTAGTGATGGG 59.962 45.833 0.00 0.00 34.84 4.00
377 378 4.558898 GCTTATCTACGTGTAGTGATGGGG 60.559 50.000 0.00 0.00 34.84 4.96
378 379 2.812836 TCTACGTGTAGTGATGGGGA 57.187 50.000 0.00 0.00 34.84 4.81
379 380 3.308035 TCTACGTGTAGTGATGGGGAT 57.692 47.619 0.00 0.00 34.84 3.85
380 381 3.220110 TCTACGTGTAGTGATGGGGATC 58.780 50.000 0.00 0.00 34.84 3.36
381 382 0.744874 ACGTGTAGTGATGGGGATCG 59.255 55.000 0.00 0.00 0.00 3.69
382 383 0.597637 CGTGTAGTGATGGGGATCGC 60.598 60.000 0.06 0.06 0.00 4.58
383 384 0.753262 GTGTAGTGATGGGGATCGCT 59.247 55.000 9.90 0.00 43.16 4.93
384 385 1.139058 GTGTAGTGATGGGGATCGCTT 59.861 52.381 9.90 0.00 41.23 4.68
385 386 2.364324 GTGTAGTGATGGGGATCGCTTA 59.636 50.000 9.90 0.00 41.23 3.09
386 387 3.006967 GTGTAGTGATGGGGATCGCTTAT 59.993 47.826 9.90 4.89 41.23 1.73
387 388 2.847327 AGTGATGGGGATCGCTTATG 57.153 50.000 9.90 0.00 38.13 1.90
388 389 2.329267 AGTGATGGGGATCGCTTATGA 58.671 47.619 9.90 0.00 38.13 2.15
389 390 2.301296 AGTGATGGGGATCGCTTATGAG 59.699 50.000 9.90 0.00 38.13 2.90
390 391 2.037772 GTGATGGGGATCGCTTATGAGT 59.962 50.000 9.90 0.00 0.00 3.41
391 392 2.705658 TGATGGGGATCGCTTATGAGTT 59.294 45.455 9.90 0.00 0.00 3.01
392 393 3.136443 TGATGGGGATCGCTTATGAGTTT 59.864 43.478 9.90 0.00 0.00 2.66
393 394 3.644966 TGGGGATCGCTTATGAGTTTT 57.355 42.857 9.90 0.00 0.00 2.43
394 395 3.963129 TGGGGATCGCTTATGAGTTTTT 58.037 40.909 9.90 0.00 0.00 1.94
500 501 7.148918 CCTGTGATTTTACGCTTTCAATTTGAG 60.149 37.037 0.00 0.00 0.00 3.02
519 520 9.828852 AATTTGAGTTTAAAACATATACGCGAA 57.171 25.926 15.93 0.00 0.00 4.70
532 533 7.205297 ACATATACGCGAAGTGGTACTAAAAT 58.795 34.615 15.93 0.00 45.78 1.82
533 534 7.707893 ACATATACGCGAAGTGGTACTAAAATT 59.292 33.333 15.93 0.00 45.78 1.82
556 557 0.038435 TCGTTCGCGGGTGACAATTA 60.038 50.000 6.13 0.00 41.70 1.40
582 583 2.416296 CGAACGTAGTGATGTTGGGCTA 60.416 50.000 0.00 0.00 45.00 3.93
588 589 4.037565 CGTAGTGATGTTGGGCTAGTATCA 59.962 45.833 0.00 0.00 0.00 2.15
592 593 5.045578 AGTGATGTTGGGCTAGTATCAGTTT 60.046 40.000 0.00 0.00 29.62 2.66
793 822 2.372172 ACTCAATCCGTCTCCAGGTTTT 59.628 45.455 0.00 0.00 0.00 2.43
794 823 3.181443 ACTCAATCCGTCTCCAGGTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
795 824 4.041198 ACTCAATCCGTCTCCAGGTTTTTA 59.959 41.667 0.00 0.00 0.00 1.52
796 825 5.174037 TCAATCCGTCTCCAGGTTTTTAT 57.826 39.130 0.00 0.00 0.00 1.40
826 856 1.722011 AAACCTAGCGACATCGTTGG 58.278 50.000 2.85 5.64 42.22 3.77
852 882 3.134127 GGAGCAACATCGGTGCCC 61.134 66.667 0.00 0.00 0.00 5.36
1023 1053 1.718757 GCGCCGGCATCATTCTTCTT 61.719 55.000 28.98 0.00 39.62 2.52
1472 3476 1.216178 GCAGATGCGGCACCAAATT 59.784 52.632 4.03 0.00 0.00 1.82
1893 3961 8.205131 ACAAACGTAATACATAACCTCATTCC 57.795 34.615 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.649155 TGCTGCAGGAATATACAAGTCTTAA 58.351 36.000 17.12 0.00 0.00 1.85
4 5 4.163078 ACTGCTGCAGGAATATACAAGTCT 59.837 41.667 31.00 4.29 35.51 3.24
5 6 4.272018 CACTGCTGCAGGAATATACAAGTC 59.728 45.833 31.00 0.00 35.51 3.01
6 7 4.194640 CACTGCTGCAGGAATATACAAGT 58.805 43.478 31.00 5.80 35.51 3.16
7 8 3.562973 CCACTGCTGCAGGAATATACAAG 59.437 47.826 31.00 5.14 35.51 3.16
8 9 3.199727 TCCACTGCTGCAGGAATATACAA 59.800 43.478 31.00 5.56 35.51 2.41
9 10 2.771372 TCCACTGCTGCAGGAATATACA 59.229 45.455 31.00 1.55 35.51 2.29
10 11 3.070159 TCTCCACTGCTGCAGGAATATAC 59.930 47.826 31.00 0.00 35.51 1.47
11 12 3.308401 TCTCCACTGCTGCAGGAATATA 58.692 45.455 31.00 11.02 35.51 0.86
12 13 2.121948 TCTCCACTGCTGCAGGAATAT 58.878 47.619 31.00 9.20 35.51 1.28
13 14 1.571955 TCTCCACTGCTGCAGGAATA 58.428 50.000 31.00 13.89 35.51 1.75
14 15 0.917533 ATCTCCACTGCTGCAGGAAT 59.082 50.000 31.00 14.67 35.51 3.01
15 16 0.694771 AATCTCCACTGCTGCAGGAA 59.305 50.000 31.00 15.87 35.51 3.36
16 17 1.571955 TAATCTCCACTGCTGCAGGA 58.428 50.000 31.00 20.34 35.51 3.86
17 18 2.617308 CAATAATCTCCACTGCTGCAGG 59.383 50.000 31.00 19.91 35.51 4.85
18 19 3.311871 GTCAATAATCTCCACTGCTGCAG 59.688 47.826 27.02 27.02 37.52 4.41
19 20 3.054875 AGTCAATAATCTCCACTGCTGCA 60.055 43.478 0.88 0.88 0.00 4.41
20 21 3.539604 AGTCAATAATCTCCACTGCTGC 58.460 45.455 0.00 0.00 0.00 5.25
21 22 7.044181 TCTTTAGTCAATAATCTCCACTGCTG 58.956 38.462 0.00 0.00 0.00 4.41
22 23 7.187824 TCTTTAGTCAATAATCTCCACTGCT 57.812 36.000 0.00 0.00 0.00 4.24
23 24 6.481644 CCTCTTTAGTCAATAATCTCCACTGC 59.518 42.308 0.00 0.00 0.00 4.40
24 25 7.786030 TCCTCTTTAGTCAATAATCTCCACTG 58.214 38.462 0.00 0.00 0.00 3.66
25 26 7.070571 CCTCCTCTTTAGTCAATAATCTCCACT 59.929 40.741 0.00 0.00 0.00 4.00
26 27 7.070074 TCCTCCTCTTTAGTCAATAATCTCCAC 59.930 40.741 0.00 0.00 0.00 4.02
27 28 7.070074 GTCCTCCTCTTTAGTCAATAATCTCCA 59.930 40.741 0.00 0.00 0.00 3.86
28 29 7.070074 TGTCCTCCTCTTTAGTCAATAATCTCC 59.930 40.741 0.00 0.00 0.00 3.71
29 30 8.012957 TGTCCTCCTCTTTAGTCAATAATCTC 57.987 38.462 0.00 0.00 0.00 2.75
30 31 7.979786 TGTCCTCCTCTTTAGTCAATAATCT 57.020 36.000 0.00 0.00 0.00 2.40
31 32 7.659390 CCATGTCCTCCTCTTTAGTCAATAATC 59.341 40.741 0.00 0.00 0.00 1.75
32 33 7.348274 TCCATGTCCTCCTCTTTAGTCAATAAT 59.652 37.037 0.00 0.00 0.00 1.28
33 34 6.672218 TCCATGTCCTCCTCTTTAGTCAATAA 59.328 38.462 0.00 0.00 0.00 1.40
34 35 6.202331 TCCATGTCCTCCTCTTTAGTCAATA 58.798 40.000 0.00 0.00 0.00 1.90
35 36 5.032846 TCCATGTCCTCCTCTTTAGTCAAT 58.967 41.667 0.00 0.00 0.00 2.57
36 37 4.425772 TCCATGTCCTCCTCTTTAGTCAA 58.574 43.478 0.00 0.00 0.00 3.18
37 38 4.061131 TCCATGTCCTCCTCTTTAGTCA 57.939 45.455 0.00 0.00 0.00 3.41
38 39 4.742138 GCATCCATGTCCTCCTCTTTAGTC 60.742 50.000 0.00 0.00 0.00 2.59
39 40 3.135530 GCATCCATGTCCTCCTCTTTAGT 59.864 47.826 0.00 0.00 0.00 2.24
40 41 3.135348 TGCATCCATGTCCTCCTCTTTAG 59.865 47.826 0.00 0.00 0.00 1.85
41 42 3.114606 TGCATCCATGTCCTCCTCTTTA 58.885 45.455 0.00 0.00 0.00 1.85
42 43 1.918262 TGCATCCATGTCCTCCTCTTT 59.082 47.619 0.00 0.00 0.00 2.52
43 44 1.588239 TGCATCCATGTCCTCCTCTT 58.412 50.000 0.00 0.00 0.00 2.85
44 45 1.817087 ATGCATCCATGTCCTCCTCT 58.183 50.000 0.00 0.00 0.00 3.69
45 46 2.621998 CAAATGCATCCATGTCCTCCTC 59.378 50.000 0.00 0.00 0.00 3.71
46 47 2.242965 TCAAATGCATCCATGTCCTCCT 59.757 45.455 0.00 0.00 0.00 3.69
47 48 2.658285 TCAAATGCATCCATGTCCTCC 58.342 47.619 0.00 0.00 0.00 4.30
48 49 4.238761 CATCAAATGCATCCATGTCCTC 57.761 45.455 0.00 0.00 0.00 3.71
70 71 0.461870 TCGGATCTTCGCCAACATGG 60.462 55.000 0.00 0.00 41.55 3.66
71 72 1.368641 TTCGGATCTTCGCCAACATG 58.631 50.000 0.00 0.00 0.00 3.21
72 73 2.107950 TTTCGGATCTTCGCCAACAT 57.892 45.000 0.00 0.00 0.00 2.71
73 74 2.107950 ATTTCGGATCTTCGCCAACA 57.892 45.000 0.00 0.00 0.00 3.33
74 75 2.678336 AGAATTTCGGATCTTCGCCAAC 59.322 45.455 0.00 0.00 0.00 3.77
75 76 2.677836 CAGAATTTCGGATCTTCGCCAA 59.322 45.455 0.00 0.00 0.00 4.52
76 77 2.279741 CAGAATTTCGGATCTTCGCCA 58.720 47.619 0.00 0.00 0.00 5.69
77 78 1.003438 GCAGAATTTCGGATCTTCGCC 60.003 52.381 0.40 0.00 0.00 5.54
78 79 1.936547 AGCAGAATTTCGGATCTTCGC 59.063 47.619 0.40 0.00 0.00 4.70
79 80 5.226396 AGATAGCAGAATTTCGGATCTTCG 58.774 41.667 0.40 0.00 0.00 3.79
80 81 6.703607 TGAAGATAGCAGAATTTCGGATCTTC 59.296 38.462 21.17 21.17 44.02 2.87
81 82 6.586344 TGAAGATAGCAGAATTTCGGATCTT 58.414 36.000 10.92 10.92 35.44 2.40
82 83 6.166984 TGAAGATAGCAGAATTTCGGATCT 57.833 37.500 0.40 0.00 0.00 2.75
83 84 6.091986 GGATGAAGATAGCAGAATTTCGGATC 59.908 42.308 0.40 0.00 0.00 3.36
84 85 5.936956 GGATGAAGATAGCAGAATTTCGGAT 59.063 40.000 0.40 0.00 0.00 4.18
85 86 5.070981 AGGATGAAGATAGCAGAATTTCGGA 59.929 40.000 0.40 0.00 0.00 4.55
86 87 5.303971 AGGATGAAGATAGCAGAATTTCGG 58.696 41.667 0.00 0.00 0.00 4.30
87 88 6.073331 GGAAGGATGAAGATAGCAGAATTTCG 60.073 42.308 0.00 0.00 0.00 3.46
88 89 6.769822 TGGAAGGATGAAGATAGCAGAATTTC 59.230 38.462 0.00 0.00 0.00 2.17
89 90 6.666678 TGGAAGGATGAAGATAGCAGAATTT 58.333 36.000 0.00 0.00 0.00 1.82
90 91 6.257994 TGGAAGGATGAAGATAGCAGAATT 57.742 37.500 0.00 0.00 0.00 2.17
91 92 5.901413 TGGAAGGATGAAGATAGCAGAAT 57.099 39.130 0.00 0.00 0.00 2.40
92 93 5.698741 TTGGAAGGATGAAGATAGCAGAA 57.301 39.130 0.00 0.00 0.00 3.02
93 94 5.431765 GTTTGGAAGGATGAAGATAGCAGA 58.568 41.667 0.00 0.00 0.00 4.26
94 95 4.578105 GGTTTGGAAGGATGAAGATAGCAG 59.422 45.833 0.00 0.00 0.00 4.24
95 96 4.018506 TGGTTTGGAAGGATGAAGATAGCA 60.019 41.667 0.00 0.00 0.00 3.49
96 97 4.526970 TGGTTTGGAAGGATGAAGATAGC 58.473 43.478 0.00 0.00 0.00 2.97
97 98 5.067023 GCTTGGTTTGGAAGGATGAAGATAG 59.933 44.000 0.00 0.00 0.00 2.08
98 99 4.949856 GCTTGGTTTGGAAGGATGAAGATA 59.050 41.667 0.00 0.00 0.00 1.98
99 100 3.766051 GCTTGGTTTGGAAGGATGAAGAT 59.234 43.478 0.00 0.00 0.00 2.40
100 101 3.157087 GCTTGGTTTGGAAGGATGAAGA 58.843 45.455 0.00 0.00 0.00 2.87
101 102 2.095059 CGCTTGGTTTGGAAGGATGAAG 60.095 50.000 0.00 0.00 0.00 3.02
102 103 1.885887 CGCTTGGTTTGGAAGGATGAA 59.114 47.619 0.00 0.00 0.00 2.57
103 104 1.533625 CGCTTGGTTTGGAAGGATGA 58.466 50.000 0.00 0.00 0.00 2.92
104 105 0.527565 CCGCTTGGTTTGGAAGGATG 59.472 55.000 0.00 0.00 0.00 3.51
105 106 0.404040 TCCGCTTGGTTTGGAAGGAT 59.596 50.000 0.00 0.00 0.00 3.24
106 107 0.536460 GTCCGCTTGGTTTGGAAGGA 60.536 55.000 0.00 0.00 32.60 3.36
107 108 1.524008 GGTCCGCTTGGTTTGGAAGG 61.524 60.000 0.00 0.00 32.60 3.46
108 109 1.524008 GGGTCCGCTTGGTTTGGAAG 61.524 60.000 0.00 0.00 32.60 3.46
109 110 1.529713 GGGTCCGCTTGGTTTGGAA 60.530 57.895 0.00 0.00 32.60 3.53
110 111 2.114411 GGGTCCGCTTGGTTTGGA 59.886 61.111 0.00 0.00 0.00 3.53
111 112 2.734948 TACGGGTCCGCTTGGTTTGG 62.735 60.000 9.55 0.00 44.19 3.28
112 113 1.296056 CTACGGGTCCGCTTGGTTTG 61.296 60.000 9.55 0.00 44.19 2.93
113 114 1.004200 CTACGGGTCCGCTTGGTTT 60.004 57.895 9.55 0.00 44.19 3.27
114 115 1.909781 TCTACGGGTCCGCTTGGTT 60.910 57.895 9.55 0.00 44.19 3.67
115 116 2.283388 TCTACGGGTCCGCTTGGT 60.283 61.111 9.55 0.00 44.19 3.67
116 117 2.183555 GTCTACGGGTCCGCTTGG 59.816 66.667 9.55 0.00 44.19 3.61
117 118 2.202570 CGTCTACGGGTCCGCTTG 60.203 66.667 9.55 0.29 44.19 4.01
118 119 2.674380 ACGTCTACGGGTCCGCTT 60.674 61.111 9.55 0.00 44.95 4.68
119 120 3.130160 GACGTCTACGGGTCCGCT 61.130 66.667 8.70 0.00 44.95 5.52
120 121 4.527157 CGACGTCTACGGGTCCGC 62.527 72.222 14.70 0.00 44.95 5.54
121 122 4.527157 GCGACGTCTACGGGTCCG 62.527 72.222 14.70 7.97 44.95 4.79
122 123 3.130160 AGCGACGTCTACGGGTCC 61.130 66.667 14.70 0.00 44.95 4.46
123 124 2.099831 CAGCGACGTCTACGGGTC 59.900 66.667 14.70 0.00 44.95 4.46
124 125 4.112341 GCAGCGACGTCTACGGGT 62.112 66.667 14.70 0.04 44.95 5.28
126 127 4.456253 ACGCAGCGACGTCTACGG 62.456 66.667 24.65 7.56 44.43 4.02
135 136 2.829043 ATAACGAGGCAACGCAGCGA 62.829 55.000 24.65 0.00 46.39 4.93
136 137 2.348140 GATAACGAGGCAACGCAGCG 62.348 60.000 14.82 14.82 46.39 5.18
137 138 1.084370 AGATAACGAGGCAACGCAGC 61.084 55.000 0.00 0.00 46.39 5.25
138 139 1.359848 AAGATAACGAGGCAACGCAG 58.640 50.000 0.00 0.00 46.39 5.18
139 140 2.658373 TAAGATAACGAGGCAACGCA 57.342 45.000 0.00 0.00 46.39 5.24
140 141 2.475487 GGATAAGATAACGAGGCAACGC 59.525 50.000 0.00 0.00 46.39 4.84
141 142 3.978687 AGGATAAGATAACGAGGCAACG 58.021 45.455 0.00 2.85 46.39 4.10
142 143 5.203060 AGAGGATAAGATAACGAGGCAAC 57.797 43.478 0.00 0.00 0.00 4.17
143 144 5.221461 GGAAGAGGATAAGATAACGAGGCAA 60.221 44.000 0.00 0.00 0.00 4.52
144 145 4.281182 GGAAGAGGATAAGATAACGAGGCA 59.719 45.833 0.00 0.00 0.00 4.75
145 146 4.616373 CGGAAGAGGATAAGATAACGAGGC 60.616 50.000 0.00 0.00 0.00 4.70
146 147 4.082679 CCGGAAGAGGATAAGATAACGAGG 60.083 50.000 0.00 0.00 0.00 4.63
147 148 4.616373 GCCGGAAGAGGATAAGATAACGAG 60.616 50.000 5.05 0.00 0.00 4.18
148 149 3.255149 GCCGGAAGAGGATAAGATAACGA 59.745 47.826 5.05 0.00 0.00 3.85
149 150 3.576648 GCCGGAAGAGGATAAGATAACG 58.423 50.000 5.05 0.00 0.00 3.18
150 151 3.579151 AGGCCGGAAGAGGATAAGATAAC 59.421 47.826 5.05 0.00 0.00 1.89
151 152 3.578716 CAGGCCGGAAGAGGATAAGATAA 59.421 47.826 5.05 0.00 0.00 1.75
152 153 3.165875 CAGGCCGGAAGAGGATAAGATA 58.834 50.000 5.05 0.00 0.00 1.98
153 154 1.974236 CAGGCCGGAAGAGGATAAGAT 59.026 52.381 5.05 0.00 0.00 2.40
154 155 1.414158 CAGGCCGGAAGAGGATAAGA 58.586 55.000 5.05 0.00 0.00 2.10
155 156 0.250081 GCAGGCCGGAAGAGGATAAG 60.250 60.000 5.05 0.00 0.00 1.73
156 157 1.830145 GCAGGCCGGAAGAGGATAA 59.170 57.895 5.05 0.00 0.00 1.75
157 158 2.498941 CGCAGGCCGGAAGAGGATA 61.499 63.158 5.05 0.00 0.00 2.59
158 159 3.854669 CGCAGGCCGGAAGAGGAT 61.855 66.667 5.05 0.00 0.00 3.24
178 179 3.000819 TCCCAGGCCAGTACACGG 61.001 66.667 5.01 0.00 0.00 4.94
179 180 2.579201 CTCCCAGGCCAGTACACG 59.421 66.667 5.01 0.00 0.00 4.49
180 181 2.269241 GCTCCCAGGCCAGTACAC 59.731 66.667 5.01 0.00 0.00 2.90
188 189 1.147153 GAGTACATGGCTCCCAGGC 59.853 63.158 0.00 0.00 39.09 4.85
189 190 0.911769 TTGAGTACATGGCTCCCAGG 59.088 55.000 14.34 0.00 41.50 4.45
190 191 2.290260 TGTTTGAGTACATGGCTCCCAG 60.290 50.000 14.34 0.00 36.75 4.45
191 192 1.702401 TGTTTGAGTACATGGCTCCCA 59.298 47.619 14.34 7.79 38.19 4.37
192 193 2.489938 TGTTTGAGTACATGGCTCCC 57.510 50.000 14.34 5.89 32.31 4.30
193 194 3.378427 GGAATGTTTGAGTACATGGCTCC 59.622 47.826 14.34 0.00 38.69 4.70
194 195 4.265073 AGGAATGTTTGAGTACATGGCTC 58.735 43.478 11.25 11.25 38.69 4.70
195 196 4.018960 AGAGGAATGTTTGAGTACATGGCT 60.019 41.667 0.00 0.00 38.69 4.75
196 197 4.265073 AGAGGAATGTTTGAGTACATGGC 58.735 43.478 0.00 0.00 38.69 4.40
197 198 5.063944 CGAAGAGGAATGTTTGAGTACATGG 59.936 44.000 0.00 0.00 38.69 3.66
198 199 5.639506 ACGAAGAGGAATGTTTGAGTACATG 59.360 40.000 0.00 0.00 38.69 3.21
199 200 5.639506 CACGAAGAGGAATGTTTGAGTACAT 59.360 40.000 0.00 0.00 40.37 2.29
200 201 4.988540 CACGAAGAGGAATGTTTGAGTACA 59.011 41.667 0.00 0.00 0.00 2.90
201 202 4.989168 ACACGAAGAGGAATGTTTGAGTAC 59.011 41.667 0.00 0.00 0.00 2.73
202 203 5.209818 ACACGAAGAGGAATGTTTGAGTA 57.790 39.130 0.00 0.00 0.00 2.59
203 204 4.073293 ACACGAAGAGGAATGTTTGAGT 57.927 40.909 0.00 0.00 0.00 3.41
204 205 4.752101 AGAACACGAAGAGGAATGTTTGAG 59.248 41.667 0.00 0.00 35.47 3.02
205 206 4.511454 CAGAACACGAAGAGGAATGTTTGA 59.489 41.667 0.00 0.00 35.47 2.69
206 207 4.319766 CCAGAACACGAAGAGGAATGTTTG 60.320 45.833 0.00 0.00 35.47 2.93
207 208 3.815401 CCAGAACACGAAGAGGAATGTTT 59.185 43.478 0.00 0.00 35.47 2.83
208 209 3.403038 CCAGAACACGAAGAGGAATGTT 58.597 45.455 0.00 0.00 37.97 2.71
209 210 2.872038 GCCAGAACACGAAGAGGAATGT 60.872 50.000 0.00 0.00 0.00 2.71
210 211 1.734465 GCCAGAACACGAAGAGGAATG 59.266 52.381 0.00 0.00 0.00 2.67
211 212 1.625818 AGCCAGAACACGAAGAGGAAT 59.374 47.619 0.00 0.00 0.00 3.01
212 213 1.048601 AGCCAGAACACGAAGAGGAA 58.951 50.000 0.00 0.00 0.00 3.36
213 214 1.048601 AAGCCAGAACACGAAGAGGA 58.951 50.000 0.00 0.00 0.00 3.71
214 215 1.151668 CAAGCCAGAACACGAAGAGG 58.848 55.000 0.00 0.00 0.00 3.69
215 216 2.154854 TCAAGCCAGAACACGAAGAG 57.845 50.000 0.00 0.00 0.00 2.85
216 217 2.839486 ATCAAGCCAGAACACGAAGA 57.161 45.000 0.00 0.00 0.00 2.87
217 218 3.589988 AGTATCAAGCCAGAACACGAAG 58.410 45.455 0.00 0.00 0.00 3.79
218 219 3.678056 AGTATCAAGCCAGAACACGAA 57.322 42.857 0.00 0.00 0.00 3.85
219 220 3.678056 AAGTATCAAGCCAGAACACGA 57.322 42.857 0.00 0.00 0.00 4.35
220 221 3.120199 CCAAAGTATCAAGCCAGAACACG 60.120 47.826 0.00 0.00 0.00 4.49
221 222 3.821033 ACCAAAGTATCAAGCCAGAACAC 59.179 43.478 0.00 0.00 0.00 3.32
222 223 4.098914 ACCAAAGTATCAAGCCAGAACA 57.901 40.909 0.00 0.00 0.00 3.18
223 224 6.759497 AATACCAAAGTATCAAGCCAGAAC 57.241 37.500 0.00 0.00 38.27 3.01
224 225 7.121168 CAGAAATACCAAAGTATCAAGCCAGAA 59.879 37.037 0.00 0.00 38.27 3.02
225 226 6.599244 CAGAAATACCAAAGTATCAAGCCAGA 59.401 38.462 0.00 0.00 38.27 3.86
226 227 6.375455 ACAGAAATACCAAAGTATCAAGCCAG 59.625 38.462 0.00 0.00 38.27 4.85
227 228 6.150976 CACAGAAATACCAAAGTATCAAGCCA 59.849 38.462 0.00 0.00 38.27 4.75
228 229 6.555315 CACAGAAATACCAAAGTATCAAGCC 58.445 40.000 0.00 0.00 38.27 4.35
229 230 6.030228 GCACAGAAATACCAAAGTATCAAGC 58.970 40.000 0.00 0.00 38.27 4.01
230 231 7.246311 CAGCACAGAAATACCAAAGTATCAAG 58.754 38.462 0.00 0.00 38.27 3.02
231 232 6.150976 CCAGCACAGAAATACCAAAGTATCAA 59.849 38.462 0.00 0.00 38.27 2.57
232 233 5.647658 CCAGCACAGAAATACCAAAGTATCA 59.352 40.000 0.00 0.00 38.27 2.15
233 234 5.648092 ACCAGCACAGAAATACCAAAGTATC 59.352 40.000 0.00 0.00 38.27 2.24
234 235 5.570320 ACCAGCACAGAAATACCAAAGTAT 58.430 37.500 0.00 0.00 41.09 2.12
235 236 4.980573 ACCAGCACAGAAATACCAAAGTA 58.019 39.130 0.00 0.00 0.00 2.24
236 237 3.832527 ACCAGCACAGAAATACCAAAGT 58.167 40.909 0.00 0.00 0.00 2.66
237 238 4.037923 ACAACCAGCACAGAAATACCAAAG 59.962 41.667 0.00 0.00 0.00 2.77
238 239 3.957497 ACAACCAGCACAGAAATACCAAA 59.043 39.130 0.00 0.00 0.00 3.28
239 240 3.561143 ACAACCAGCACAGAAATACCAA 58.439 40.909 0.00 0.00 0.00 3.67
240 241 3.146066 GACAACCAGCACAGAAATACCA 58.854 45.455 0.00 0.00 0.00 3.25
241 242 3.189287 CAGACAACCAGCACAGAAATACC 59.811 47.826 0.00 0.00 0.00 2.73
242 243 3.189287 CCAGACAACCAGCACAGAAATAC 59.811 47.826 0.00 0.00 0.00 1.89
243 244 3.411446 CCAGACAACCAGCACAGAAATA 58.589 45.455 0.00 0.00 0.00 1.40
244 245 2.233271 CCAGACAACCAGCACAGAAAT 58.767 47.619 0.00 0.00 0.00 2.17
245 246 1.679139 CCAGACAACCAGCACAGAAA 58.321 50.000 0.00 0.00 0.00 2.52
246 247 0.179020 CCCAGACAACCAGCACAGAA 60.179 55.000 0.00 0.00 0.00 3.02
247 248 1.344953 ACCCAGACAACCAGCACAGA 61.345 55.000 0.00 0.00 0.00 3.41
248 249 0.886490 GACCCAGACAACCAGCACAG 60.886 60.000 0.00 0.00 0.00 3.66
249 250 1.148273 GACCCAGACAACCAGCACA 59.852 57.895 0.00 0.00 0.00 4.57
250 251 1.600916 GGACCCAGACAACCAGCAC 60.601 63.158 0.00 0.00 0.00 4.40
251 252 1.352622 AAGGACCCAGACAACCAGCA 61.353 55.000 0.00 0.00 0.00 4.41
252 253 0.890996 CAAGGACCCAGACAACCAGC 60.891 60.000 0.00 0.00 0.00 4.85
253 254 0.474184 ACAAGGACCCAGACAACCAG 59.526 55.000 0.00 0.00 0.00 4.00
254 255 0.923358 AACAAGGACCCAGACAACCA 59.077 50.000 0.00 0.00 0.00 3.67
255 256 2.882761 GTTAACAAGGACCCAGACAACC 59.117 50.000 0.00 0.00 0.00 3.77
256 257 3.813724 GAGTTAACAAGGACCCAGACAAC 59.186 47.826 8.61 0.00 0.00 3.32
257 258 3.714798 AGAGTTAACAAGGACCCAGACAA 59.285 43.478 8.61 0.00 0.00 3.18
258 259 3.071023 CAGAGTTAACAAGGACCCAGACA 59.929 47.826 8.61 0.00 0.00 3.41
259 260 3.665190 CAGAGTTAACAAGGACCCAGAC 58.335 50.000 8.61 0.00 0.00 3.51
260 261 2.038557 GCAGAGTTAACAAGGACCCAGA 59.961 50.000 8.61 0.00 0.00 3.86
261 262 2.427506 GCAGAGTTAACAAGGACCCAG 58.572 52.381 8.61 0.00 0.00 4.45
262 263 1.073284 GGCAGAGTTAACAAGGACCCA 59.927 52.381 8.61 0.00 0.00 4.51
263 264 1.351350 AGGCAGAGTTAACAAGGACCC 59.649 52.381 8.61 0.57 0.00 4.46
264 265 2.427506 CAGGCAGAGTTAACAAGGACC 58.572 52.381 8.61 2.68 0.00 4.46
265 266 2.224548 ACCAGGCAGAGTTAACAAGGAC 60.225 50.000 8.61 0.00 0.00 3.85
266 267 2.054799 ACCAGGCAGAGTTAACAAGGA 58.945 47.619 8.61 0.00 0.00 3.36
267 268 2.154462 CACCAGGCAGAGTTAACAAGG 58.846 52.381 8.61 1.47 0.00 3.61
268 269 2.154462 CCACCAGGCAGAGTTAACAAG 58.846 52.381 8.61 0.00 0.00 3.16
269 270 2.270352 CCACCAGGCAGAGTTAACAA 57.730 50.000 8.61 0.00 0.00 2.83
290 291 7.453752 AGGTCATAGCCCGACTTTATAGATAAA 59.546 37.037 0.00 0.00 33.73 1.40
291 292 6.952358 AGGTCATAGCCCGACTTTATAGATAA 59.048 38.462 0.00 0.00 33.73 1.75
292 293 6.491383 AGGTCATAGCCCGACTTTATAGATA 58.509 40.000 0.00 0.00 33.73 1.98
293 294 5.334421 AGGTCATAGCCCGACTTTATAGAT 58.666 41.667 0.00 0.00 33.73 1.98
294 295 4.737578 AGGTCATAGCCCGACTTTATAGA 58.262 43.478 0.00 0.00 33.73 1.98
295 296 5.470047 AAGGTCATAGCCCGACTTTATAG 57.530 43.478 0.00 0.00 31.62 1.31
296 297 5.881923 AAAGGTCATAGCCCGACTTTATA 57.118 39.130 0.00 0.00 32.14 0.98
297 298 4.772886 AAAGGTCATAGCCCGACTTTAT 57.227 40.909 0.00 0.00 32.14 1.40
298 299 4.224370 AGAAAAGGTCATAGCCCGACTTTA 59.776 41.667 0.00 0.00 32.14 1.85
299 300 3.009143 AGAAAAGGTCATAGCCCGACTTT 59.991 43.478 0.00 0.00 34.50 2.66
300 301 2.572104 AGAAAAGGTCATAGCCCGACTT 59.428 45.455 0.00 0.00 33.73 3.01
301 302 2.168728 GAGAAAAGGTCATAGCCCGACT 59.831 50.000 0.00 0.00 33.73 4.18
302 303 2.168728 AGAGAAAAGGTCATAGCCCGAC 59.831 50.000 0.00 0.00 0.00 4.79
303 304 2.467880 AGAGAAAAGGTCATAGCCCGA 58.532 47.619 0.00 0.00 0.00 5.14
304 305 2.990066 AGAGAAAAGGTCATAGCCCG 57.010 50.000 0.00 0.00 0.00 6.13
305 306 6.685527 CTTTTAGAGAAAAGGTCATAGCCC 57.314 41.667 2.82 0.00 45.30 5.19
316 317 9.593134 TTACAGCATTTTTGCTTTTAGAGAAAA 57.407 25.926 0.00 0.00 43.52 2.29
317 318 9.593134 TTTACAGCATTTTTGCTTTTAGAGAAA 57.407 25.926 0.00 0.00 43.52 2.52
318 319 9.593134 TTTTACAGCATTTTTGCTTTTAGAGAA 57.407 25.926 0.00 0.00 43.52 2.87
319 320 9.593134 TTTTTACAGCATTTTTGCTTTTAGAGA 57.407 25.926 0.00 0.00 43.52 3.10
342 343 8.374327 ACACGTAGATAAGCAAACTAGTTTTT 57.626 30.769 18.25 13.32 0.00 1.94
343 344 7.958053 ACACGTAGATAAGCAAACTAGTTTT 57.042 32.000 18.25 7.16 0.00 2.43
344 345 8.302438 ACTACACGTAGATAAGCAAACTAGTTT 58.698 33.333 15.22 15.22 36.97 2.66
345 346 7.754027 CACTACACGTAGATAAGCAAACTAGTT 59.246 37.037 11.12 1.12 36.97 2.24
346 347 7.120285 TCACTACACGTAGATAAGCAAACTAGT 59.880 37.037 11.12 0.00 36.97 2.57
347 348 7.470079 TCACTACACGTAGATAAGCAAACTAG 58.530 38.462 11.12 0.00 36.97 2.57
348 349 7.381766 TCACTACACGTAGATAAGCAAACTA 57.618 36.000 11.12 0.00 36.97 2.24
349 350 6.263516 TCACTACACGTAGATAAGCAAACT 57.736 37.500 11.12 0.00 36.97 2.66
350 351 6.019801 CCATCACTACACGTAGATAAGCAAAC 60.020 42.308 11.12 0.00 36.97 2.93
351 352 6.040247 CCATCACTACACGTAGATAAGCAAA 58.960 40.000 11.12 0.00 36.97 3.68
352 353 5.451381 CCCATCACTACACGTAGATAAGCAA 60.451 44.000 11.12 0.00 36.97 3.91
353 354 4.037565 CCCATCACTACACGTAGATAAGCA 59.962 45.833 11.12 0.00 36.97 3.91
354 355 4.547532 CCCATCACTACACGTAGATAAGC 58.452 47.826 11.12 0.00 36.97 3.09
355 356 4.825634 TCCCCATCACTACACGTAGATAAG 59.174 45.833 11.12 0.00 36.97 1.73
356 357 4.795469 TCCCCATCACTACACGTAGATAA 58.205 43.478 11.12 0.00 36.97 1.75
357 358 4.442401 TCCCCATCACTACACGTAGATA 57.558 45.455 11.12 0.00 36.97 1.98
358 359 3.308035 TCCCCATCACTACACGTAGAT 57.692 47.619 11.12 0.00 36.97 1.98
359 360 2.812836 TCCCCATCACTACACGTAGA 57.187 50.000 11.12 0.00 36.97 2.59
360 361 2.031069 CGATCCCCATCACTACACGTAG 60.031 54.545 2.63 2.63 39.04 3.51
361 362 1.951602 CGATCCCCATCACTACACGTA 59.048 52.381 0.00 0.00 0.00 3.57
362 363 0.744874 CGATCCCCATCACTACACGT 59.255 55.000 0.00 0.00 0.00 4.49
363 364 0.597637 GCGATCCCCATCACTACACG 60.598 60.000 0.00 0.00 0.00 4.49
364 365 0.753262 AGCGATCCCCATCACTACAC 59.247 55.000 0.00 0.00 0.00 2.90
365 366 1.496060 AAGCGATCCCCATCACTACA 58.504 50.000 0.00 0.00 0.00 2.74
366 367 3.258372 TCATAAGCGATCCCCATCACTAC 59.742 47.826 0.00 0.00 0.00 2.73
367 368 3.506398 TCATAAGCGATCCCCATCACTA 58.494 45.455 0.00 0.00 0.00 2.74
368 369 2.301296 CTCATAAGCGATCCCCATCACT 59.699 50.000 0.00 0.00 0.00 3.41
369 370 2.037772 ACTCATAAGCGATCCCCATCAC 59.962 50.000 0.00 0.00 0.00 3.06
370 371 2.329267 ACTCATAAGCGATCCCCATCA 58.671 47.619 0.00 0.00 0.00 3.07
371 372 3.409026 AACTCATAAGCGATCCCCATC 57.591 47.619 0.00 0.00 0.00 3.51
372 373 3.864789 AAACTCATAAGCGATCCCCAT 57.135 42.857 0.00 0.00 0.00 4.00
373 374 3.644966 AAAACTCATAAGCGATCCCCA 57.355 42.857 0.00 0.00 0.00 4.96
429 430 1.508632 CCGACAAAGTCAATCCGTGT 58.491 50.000 0.00 0.00 32.09 4.49
500 501 6.536688 ACCACTTCGCGTATATGTTTTAAAC 58.463 36.000 5.77 0.20 0.00 2.01
519 520 6.652245 CGAACGAAACAATTTTAGTACCACT 58.348 36.000 0.00 0.00 31.06 4.00
532 533 1.521010 TCACCCGCGAACGAAACAA 60.521 52.632 8.23 0.00 43.93 2.83
533 534 2.106534 TCACCCGCGAACGAAACA 59.893 55.556 8.23 0.00 43.93 2.83
556 557 3.682858 CCAACATCACTACGTTCGGAAAT 59.317 43.478 0.00 0.00 0.00 2.17
582 583 5.940470 CCCTAAACAGAAGCAAACTGATACT 59.060 40.000 10.78 0.00 38.55 2.12
588 589 2.158460 AGGCCCTAAACAGAAGCAAACT 60.158 45.455 0.00 0.00 0.00 2.66
592 593 0.328258 GGAGGCCCTAAACAGAAGCA 59.672 55.000 0.00 0.00 0.00 3.91
675 704 0.320374 ACACACATGACCTACACGGG 59.680 55.000 0.00 0.00 36.97 5.28
676 705 3.250744 CTTACACACATGACCTACACGG 58.749 50.000 0.00 0.00 39.35 4.94
793 822 7.093377 TGTCGCTAGGTTTAGGGTTTCTTATAA 60.093 37.037 0.00 0.00 39.95 0.98
794 823 6.380846 TGTCGCTAGGTTTAGGGTTTCTTATA 59.619 38.462 0.00 0.00 39.95 0.98
795 824 5.188359 TGTCGCTAGGTTTAGGGTTTCTTAT 59.812 40.000 0.00 0.00 39.95 1.73
796 825 4.527816 TGTCGCTAGGTTTAGGGTTTCTTA 59.472 41.667 0.00 0.00 39.95 2.10
826 856 0.169009 GATGTTGCTCCCGTCTTTGC 59.831 55.000 0.00 0.00 0.00 3.68
852 882 1.144565 CTTCGATCAGCACGGCAGAG 61.145 60.000 0.00 0.00 0.00 3.35
1156 1251 2.360350 CAGCAGCCAACCGTCCAT 60.360 61.111 0.00 0.00 0.00 3.41
1387 3391 1.798813 GTCCTAGGTGTGCAAAACGAG 59.201 52.381 9.08 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.