Multiple sequence alignment - TraesCS5A01G418200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G418200 chr5A 100.000 3236 0 0 1 3236 606164751 606161516 0.000000e+00 5976
1 TraesCS5A01G418200 chr5A 93.182 88 2 1 637 724 606164072 606163989 3.390000e-25 126
2 TraesCS5A01G418200 chr5A 93.182 88 2 1 680 763 606164115 606164028 3.390000e-25 126
3 TraesCS5A01G418200 chr5D 88.434 2611 150 58 736 3234 484579539 484576969 0.000000e+00 3009
4 TraesCS5A01G418200 chr5D 93.043 230 13 2 458 685 484579740 484579512 1.860000e-87 333
5 TraesCS5A01G418200 chr5B 91.978 1097 69 13 719 1808 595663969 595662885 0.000000e+00 1520
6 TraesCS5A01G418200 chr5B 84.758 1509 135 38 1795 3236 595662526 595661046 0.000000e+00 1424
7 TraesCS5A01G418200 chr5B 79.403 704 68 26 10 685 595664579 595663925 2.980000e-115 425
8 TraesCS5A01G418200 chr5B 86.818 220 21 4 727 938 75544071 75543852 4.170000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G418200 chr5A 606161516 606164751 3235 True 2076 5976 95.454667 1 3236 3 chr5A.!!$R1 3235
1 TraesCS5A01G418200 chr5D 484576969 484579740 2771 True 1671 3009 90.738500 458 3234 2 chr5D.!!$R1 2776
2 TraesCS5A01G418200 chr5B 595661046 595664579 3533 True 1123 1520 85.379667 10 3236 3 chr5B.!!$R2 3226

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.326264 ATCTGAGCCGCTTTTCCTGT 59.674 50.0 0.0 0.0 0.0 4.00 F
708 739 0.332972 TCAGCCTGAGAGTCCTAGCA 59.667 55.0 0.0 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1167 1221 0.67895 TCACATCAGCGACTGAACCA 59.321 50.0 12.43 0.00 44.04 3.67 R
2505 3011 0.02930 CCGCGATCGCAAATTTGGAT 59.971 50.0 36.45 18.06 42.06 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.019984 GATGGAATCTGAGCCGCTTTT 58.980 47.619 0.00 0.00 41.17 2.27
29 30 0.735471 GGAATCTGAGCCGCTTTTCC 59.265 55.000 0.00 2.27 0.00 3.13
32 33 0.326264 ATCTGAGCCGCTTTTCCTGT 59.674 50.000 0.00 0.00 0.00 4.00
35 36 0.667993 TGAGCCGCTTTTCCTGTTTG 59.332 50.000 0.00 0.00 0.00 2.93
36 37 0.664466 GAGCCGCTTTTCCTGTTTGC 60.664 55.000 0.00 0.00 0.00 3.68
37 38 1.109323 AGCCGCTTTTCCTGTTTGCT 61.109 50.000 0.00 0.00 0.00 3.91
38 39 0.664466 GCCGCTTTTCCTGTTTGCTC 60.664 55.000 0.00 0.00 0.00 4.26
39 40 0.385974 CCGCTTTTCCTGTTTGCTCG 60.386 55.000 0.00 0.00 0.00 5.03
53 54 4.150804 TGTTTGCTCGTTTGTTGTTTTTCC 59.849 37.500 0.00 0.00 0.00 3.13
64 65 4.358851 TGTTGTTTTTCCTGAAAGCGATG 58.641 39.130 0.00 0.00 31.77 3.84
68 69 3.417069 TTTTCCTGAAAGCGATGGAGA 57.583 42.857 0.00 0.00 0.00 3.71
69 70 2.680312 TTCCTGAAAGCGATGGAGAG 57.320 50.000 0.00 0.00 0.00 3.20
70 71 1.852633 TCCTGAAAGCGATGGAGAGA 58.147 50.000 0.00 0.00 0.00 3.10
71 72 1.753649 TCCTGAAAGCGATGGAGAGAG 59.246 52.381 0.00 0.00 0.00 3.20
81 82 2.821810 GGAGAGAGCGGCTTTGCC 60.822 66.667 2.97 0.00 46.75 4.52
92 93 2.978018 GCTTTGCCGGACGGAAAGG 61.978 63.158 23.72 18.31 33.66 3.11
103 104 3.243334 CGGACGGAAAGGTAGGTAGATTC 60.243 52.174 0.00 0.00 0.00 2.52
124 127 8.750298 AGATTCGTGAGTTCTTTAGGATAAGAA 58.250 33.333 0.00 0.00 40.76 2.52
125 128 8.934507 ATTCGTGAGTTCTTTAGGATAAGAAG 57.065 34.615 0.00 0.00 42.93 2.85
155 158 1.967779 GGGTAAACATGGTTTGCCTGT 59.032 47.619 22.30 0.00 35.03 4.00
165 183 4.379339 TGGTTTGCCTGTGTAGTTTTTC 57.621 40.909 0.00 0.00 35.27 2.29
178 196 6.183360 TGTGTAGTTTTTCTTCGTCCCTTTTC 60.183 38.462 0.00 0.00 0.00 2.29
185 203 2.303022 TCTTCGTCCCTTTTCTGCTGAT 59.697 45.455 0.00 0.00 0.00 2.90
189 207 1.066143 GTCCCTTTTCTGCTGATCGGA 60.066 52.381 5.48 0.00 0.00 4.55
190 208 1.839994 TCCCTTTTCTGCTGATCGGAT 59.160 47.619 5.48 0.00 0.00 4.18
191 209 2.239654 TCCCTTTTCTGCTGATCGGATT 59.760 45.455 5.48 0.00 0.00 3.01
192 210 3.454447 TCCCTTTTCTGCTGATCGGATTA 59.546 43.478 5.48 0.00 0.00 1.75
201 219 4.560128 TGCTGATCGGATTATTAGCAGAC 58.440 43.478 5.48 4.15 41.83 3.51
203 221 4.616143 GCTGATCGGATTATTAGCAGACGA 60.616 45.833 5.48 0.00 38.13 4.20
205 223 3.284323 TCGGATTATTAGCAGACGAGC 57.716 47.619 0.00 0.00 0.00 5.03
221 239 3.715495 ACGAGCTCTGAATATGCTTCTG 58.285 45.455 12.85 0.00 37.16 3.02
225 243 4.841422 AGCTCTGAATATGCTTCTGTTGT 58.159 39.130 0.00 0.00 32.61 3.32
242 262 4.651778 TGTTGTGGGTAAAGAAGAGATGG 58.348 43.478 0.00 0.00 0.00 3.51
243 263 4.010349 GTTGTGGGTAAAGAAGAGATGGG 58.990 47.826 0.00 0.00 0.00 4.00
256 276 4.496336 ATGGGCGGCCTTCTCTGC 62.496 66.667 29.87 0.07 37.61 4.26
262 282 1.712977 GCGGCCTTCTCTGCTGATTG 61.713 60.000 0.00 0.00 37.27 2.67
279 307 3.056328 GTGCCCTCGGTTGCTTCC 61.056 66.667 0.00 0.00 0.00 3.46
293 321 0.940991 GCTTCCGCAACAAAGCCAAG 60.941 55.000 0.00 0.00 41.60 3.61
296 324 1.007387 CCGCAACAAAGCCAAGGAC 60.007 57.895 0.00 0.00 0.00 3.85
299 327 1.856802 GCAACAAAGCCAAGGACTTG 58.143 50.000 5.09 5.09 40.13 3.16
301 329 2.360801 GCAACAAAGCCAAGGACTTGTA 59.639 45.455 10.81 0.00 38.85 2.41
302 330 3.550842 GCAACAAAGCCAAGGACTTGTAG 60.551 47.826 10.81 0.00 38.85 2.74
303 331 3.857157 ACAAAGCCAAGGACTTGTAGA 57.143 42.857 10.81 0.00 38.85 2.59
306 334 4.520492 ACAAAGCCAAGGACTTGTAGATTG 59.480 41.667 10.81 11.44 38.85 2.67
307 335 4.640771 AAGCCAAGGACTTGTAGATTGA 57.359 40.909 10.81 0.00 38.85 2.57
308 336 4.851639 AGCCAAGGACTTGTAGATTGAT 57.148 40.909 10.81 0.00 38.85 2.57
311 339 6.904626 AGCCAAGGACTTGTAGATTGATATT 58.095 36.000 10.81 0.00 38.85 1.28
341 369 6.812998 TCCATAAAGTACCGGTCTTTATCTG 58.187 40.000 29.48 25.23 42.48 2.90
349 377 5.532664 ACCGGTCTTTATCTGGTTAGATC 57.467 43.478 0.00 0.00 42.60 2.75
351 379 4.262506 CCGGTCTTTATCTGGTTAGATCCC 60.263 50.000 0.00 0.00 42.60 3.85
352 380 4.262506 CGGTCTTTATCTGGTTAGATCCCC 60.263 50.000 0.00 0.00 42.60 4.81
358 386 6.500589 TTATCTGGTTAGATCCCCTTGAAG 57.499 41.667 0.00 0.00 42.60 3.02
371 399 0.958822 CTTGAAGGGGACGGTTTTGG 59.041 55.000 0.00 0.00 0.00 3.28
374 402 1.152631 AAGGGGACGGTTTTGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
377 405 1.454295 GGGACGGTTTTGGTGGTGT 60.454 57.895 0.00 0.00 0.00 4.16
397 425 2.865551 GTTTGCAGTGATTTTGGTGGTG 59.134 45.455 0.00 0.00 0.00 4.17
410 438 3.153369 TGGTGGTGCATAACTGAATGT 57.847 42.857 0.00 0.00 0.00 2.71
412 440 3.081061 GGTGGTGCATAACTGAATGTCA 58.919 45.455 0.00 0.00 0.00 3.58
413 441 3.696051 GGTGGTGCATAACTGAATGTCAT 59.304 43.478 0.00 0.00 0.00 3.06
417 445 6.646240 GTGGTGCATAACTGAATGTCATTTTT 59.354 34.615 0.00 0.00 0.00 1.94
418 446 6.867816 TGGTGCATAACTGAATGTCATTTTTC 59.132 34.615 0.00 0.00 0.00 2.29
419 447 7.092716 GGTGCATAACTGAATGTCATTTTTCT 58.907 34.615 0.00 0.00 0.00 2.52
420 448 7.274250 GGTGCATAACTGAATGTCATTTTTCTC 59.726 37.037 0.00 0.00 0.00 2.87
421 449 8.025445 GTGCATAACTGAATGTCATTTTTCTCT 58.975 33.333 0.00 0.00 0.00 3.10
422 450 8.239314 TGCATAACTGAATGTCATTTTTCTCTC 58.761 33.333 0.00 0.00 0.00 3.20
423 451 7.427606 GCATAACTGAATGTCATTTTTCTCTCG 59.572 37.037 0.00 0.00 0.00 4.04
424 452 5.288543 ACTGAATGTCATTTTTCTCTCGC 57.711 39.130 0.00 0.00 0.00 5.03
425 453 4.999950 ACTGAATGTCATTTTTCTCTCGCT 59.000 37.500 0.00 0.00 0.00 4.93
427 455 6.650807 ACTGAATGTCATTTTTCTCTCGCTTA 59.349 34.615 0.00 0.00 0.00 3.09
428 456 7.173218 ACTGAATGTCATTTTTCTCTCGCTTAA 59.827 33.333 0.00 0.00 0.00 1.85
429 457 7.298122 TGAATGTCATTTTTCTCTCGCTTAAC 58.702 34.615 0.00 0.00 0.00 2.01
430 458 6.801539 ATGTCATTTTTCTCTCGCTTAACA 57.198 33.333 0.00 0.00 0.00 2.41
431 459 6.801539 TGTCATTTTTCTCTCGCTTAACAT 57.198 33.333 0.00 0.00 0.00 2.71
432 460 6.602179 TGTCATTTTTCTCTCGCTTAACATG 58.398 36.000 0.00 0.00 0.00 3.21
433 461 6.426633 TGTCATTTTTCTCTCGCTTAACATGA 59.573 34.615 0.00 0.00 0.00 3.07
434 462 7.119699 TGTCATTTTTCTCTCGCTTAACATGAT 59.880 33.333 0.00 0.00 0.00 2.45
435 463 7.965107 GTCATTTTTCTCTCGCTTAACATGATT 59.035 33.333 0.00 0.00 0.00 2.57
436 464 8.177663 TCATTTTTCTCTCGCTTAACATGATTC 58.822 33.333 0.00 0.00 0.00 2.52
437 465 7.433708 TTTTTCTCTCGCTTAACATGATTCA 57.566 32.000 0.00 0.00 0.00 2.57
438 466 7.433708 TTTTCTCTCGCTTAACATGATTCAA 57.566 32.000 0.00 0.00 0.00 2.69
439 467 7.433708 TTTCTCTCGCTTAACATGATTCAAA 57.566 32.000 0.00 0.00 0.00 2.69
440 468 7.433708 TTCTCTCGCTTAACATGATTCAAAA 57.566 32.000 0.00 0.00 0.00 2.44
441 469 7.433708 TCTCTCGCTTAACATGATTCAAAAA 57.566 32.000 0.00 0.00 0.00 1.94
561 592 9.911788 ACTAGATTGTTCATTTATGATGGAAGT 57.088 29.630 0.00 0.00 36.56 3.01
606 637 2.242965 AGGCTGGTCCATGAATGAATGA 59.757 45.455 0.00 0.00 37.29 2.57
607 638 3.025978 GGCTGGTCCATGAATGAATGAA 58.974 45.455 0.00 0.00 34.01 2.57
614 645 8.536340 TGGTCCATGAATGAATGAATATTGAA 57.464 30.769 0.00 0.00 0.00 2.69
644 675 1.066430 GGCATCCGACTCAACTTACCA 60.066 52.381 0.00 0.00 0.00 3.25
645 676 2.271800 GCATCCGACTCAACTTACCAG 58.728 52.381 0.00 0.00 0.00 4.00
646 677 2.353803 GCATCCGACTCAACTTACCAGT 60.354 50.000 0.00 0.00 33.11 4.00
647 678 3.512680 CATCCGACTCAACTTACCAGTC 58.487 50.000 0.00 0.00 34.36 3.51
648 679 2.589720 TCCGACTCAACTTACCAGTCA 58.410 47.619 0.00 0.00 37.05 3.41
649 680 2.557056 TCCGACTCAACTTACCAGTCAG 59.443 50.000 0.00 0.00 37.05 3.51
650 681 2.329379 CGACTCAACTTACCAGTCAGC 58.671 52.381 0.00 0.00 37.05 4.26
651 682 2.689646 GACTCAACTTACCAGTCAGCC 58.310 52.381 0.00 0.00 37.17 4.85
652 683 2.300437 GACTCAACTTACCAGTCAGCCT 59.700 50.000 0.00 0.00 37.17 4.58
653 684 2.037772 ACTCAACTTACCAGTCAGCCTG 59.962 50.000 0.00 0.00 41.15 4.85
654 685 2.300152 CTCAACTTACCAGTCAGCCTGA 59.700 50.000 0.00 0.00 44.49 3.86
655 686 2.300152 TCAACTTACCAGTCAGCCTGAG 59.700 50.000 0.00 0.00 44.49 3.35
656 687 2.300152 CAACTTACCAGTCAGCCTGAGA 59.700 50.000 0.00 0.00 44.49 3.27
657 688 2.175202 ACTTACCAGTCAGCCTGAGAG 58.825 52.381 0.00 0.00 44.49 3.20
658 689 2.225142 ACTTACCAGTCAGCCTGAGAGA 60.225 50.000 0.00 0.00 44.49 3.10
659 690 2.136298 TACCAGTCAGCCTGAGAGAG 57.864 55.000 0.00 0.00 44.49 3.20
660 691 0.407528 ACCAGTCAGCCTGAGAGAGA 59.592 55.000 0.00 0.00 44.49 3.10
661 692 1.105457 CCAGTCAGCCTGAGAGAGAG 58.895 60.000 0.00 0.00 44.49 3.20
662 693 1.616725 CCAGTCAGCCTGAGAGAGAGT 60.617 57.143 0.00 0.00 44.49 3.24
663 694 1.745087 CAGTCAGCCTGAGAGAGAGTC 59.255 57.143 0.00 0.00 44.49 3.36
664 695 1.102978 GTCAGCCTGAGAGAGAGTCC 58.897 60.000 0.00 0.00 0.00 3.85
665 696 0.998928 TCAGCCTGAGAGAGAGTCCT 59.001 55.000 0.00 0.00 0.00 3.85
666 697 2.092646 GTCAGCCTGAGAGAGAGTCCTA 60.093 54.545 0.00 0.00 0.00 2.94
667 698 2.172505 TCAGCCTGAGAGAGAGTCCTAG 59.827 54.545 0.00 0.00 0.00 3.02
668 699 1.133792 AGCCTGAGAGAGAGTCCTAGC 60.134 57.143 0.00 0.00 0.00 3.42
669 700 1.409521 GCCTGAGAGAGAGTCCTAGCA 60.410 57.143 0.00 0.00 0.00 3.49
670 701 2.948147 GCCTGAGAGAGAGTCCTAGCAA 60.948 54.545 0.00 0.00 0.00 3.91
671 702 3.360867 CCTGAGAGAGAGTCCTAGCAAA 58.639 50.000 0.00 0.00 0.00 3.68
672 703 3.130340 CCTGAGAGAGAGTCCTAGCAAAC 59.870 52.174 0.00 0.00 0.00 2.93
673 704 3.761218 CTGAGAGAGAGTCCTAGCAAACA 59.239 47.826 0.00 0.00 0.00 2.83
674 705 3.761218 TGAGAGAGAGTCCTAGCAAACAG 59.239 47.826 0.00 0.00 0.00 3.16
675 706 3.761752 GAGAGAGAGTCCTAGCAAACAGT 59.238 47.826 0.00 0.00 0.00 3.55
676 707 4.924625 AGAGAGAGTCCTAGCAAACAGTA 58.075 43.478 0.00 0.00 0.00 2.74
677 708 5.326069 AGAGAGAGTCCTAGCAAACAGTAA 58.674 41.667 0.00 0.00 0.00 2.24
678 709 5.955355 AGAGAGAGTCCTAGCAAACAGTAAT 59.045 40.000 0.00 0.00 0.00 1.89
679 710 7.120051 AGAGAGAGTCCTAGCAAACAGTAATA 58.880 38.462 0.00 0.00 0.00 0.98
680 711 7.616150 AGAGAGAGTCCTAGCAAACAGTAATAA 59.384 37.037 0.00 0.00 0.00 1.40
681 712 7.548967 AGAGAGTCCTAGCAAACAGTAATAAC 58.451 38.462 0.00 0.00 0.00 1.89
682 713 7.397761 AGAGAGTCCTAGCAAACAGTAATAACT 59.602 37.037 0.00 0.00 35.91 2.24
683 714 7.908453 AGAGTCCTAGCAAACAGTAATAACTT 58.092 34.615 0.00 0.00 31.97 2.66
684 715 9.032624 AGAGTCCTAGCAAACAGTAATAACTTA 57.967 33.333 0.00 0.00 31.97 2.24
685 716 8.999220 AGTCCTAGCAAACAGTAATAACTTAC 57.001 34.615 0.00 0.00 37.99 2.34
686 717 8.591072 AGTCCTAGCAAACAGTAATAACTTACA 58.409 33.333 0.00 0.00 39.81 2.41
687 718 9.211485 GTCCTAGCAAACAGTAATAACTTACAA 57.789 33.333 0.00 0.00 39.81 2.41
688 719 9.431887 TCCTAGCAAACAGTAATAACTTACAAG 57.568 33.333 0.00 0.00 39.81 3.16
689 720 9.216117 CCTAGCAAACAGTAATAACTTACAAGT 57.784 33.333 0.00 0.00 39.81 3.16
691 722 8.671384 AGCAAACAGTAATAACTTACAAGTCA 57.329 30.769 0.00 0.00 39.81 3.41
692 723 8.774586 AGCAAACAGTAATAACTTACAAGTCAG 58.225 33.333 0.00 0.00 39.81 3.51
693 724 7.534239 GCAAACAGTAATAACTTACAAGTCAGC 59.466 37.037 0.00 0.00 39.81 4.26
694 725 7.668525 AACAGTAATAACTTACAAGTCAGCC 57.331 36.000 0.00 0.00 39.81 4.85
695 726 7.005709 ACAGTAATAACTTACAAGTCAGCCT 57.994 36.000 0.00 0.00 39.81 4.58
696 727 6.874134 ACAGTAATAACTTACAAGTCAGCCTG 59.126 38.462 0.00 0.00 39.81 4.85
697 728 7.097192 CAGTAATAACTTACAAGTCAGCCTGA 58.903 38.462 0.00 0.00 39.81 3.86
698 729 7.276658 CAGTAATAACTTACAAGTCAGCCTGAG 59.723 40.741 0.00 0.00 39.81 3.35
699 730 6.360370 AATAACTTACAAGTCAGCCTGAGA 57.640 37.500 0.00 0.00 38.57 3.27
700 731 3.951775 ACTTACAAGTCAGCCTGAGAG 57.048 47.619 0.00 0.00 32.86 3.20
701 732 3.235200 ACTTACAAGTCAGCCTGAGAGT 58.765 45.455 0.00 0.00 32.86 3.24
702 733 3.257127 ACTTACAAGTCAGCCTGAGAGTC 59.743 47.826 0.00 0.00 32.86 3.36
703 734 0.972883 ACAAGTCAGCCTGAGAGTCC 59.027 55.000 0.00 0.00 0.00 3.85
704 735 1.265236 CAAGTCAGCCTGAGAGTCCT 58.735 55.000 0.00 0.00 0.00 3.85
705 736 2.225142 ACAAGTCAGCCTGAGAGTCCTA 60.225 50.000 0.00 0.00 0.00 2.94
706 737 2.426738 CAAGTCAGCCTGAGAGTCCTAG 59.573 54.545 0.00 0.00 0.00 3.02
707 738 0.744281 GTCAGCCTGAGAGTCCTAGC 59.256 60.000 0.00 0.00 0.00 3.42
708 739 0.332972 TCAGCCTGAGAGTCCTAGCA 59.667 55.000 0.00 0.00 0.00 3.49
709 740 1.189752 CAGCCTGAGAGTCCTAGCAA 58.810 55.000 0.00 0.00 0.00 3.91
710 741 1.552337 CAGCCTGAGAGTCCTAGCAAA 59.448 52.381 0.00 0.00 0.00 3.68
711 742 1.552792 AGCCTGAGAGTCCTAGCAAAC 59.447 52.381 0.00 0.00 0.00 2.93
712 743 1.276421 GCCTGAGAGTCCTAGCAAACA 59.724 52.381 0.00 0.00 0.00 2.83
713 744 2.676463 GCCTGAGAGTCCTAGCAAACAG 60.676 54.545 0.00 0.00 0.00 3.16
714 745 2.564947 CCTGAGAGTCCTAGCAAACAGT 59.435 50.000 0.00 0.00 0.00 3.55
715 746 3.764434 CCTGAGAGTCCTAGCAAACAGTA 59.236 47.826 0.00 0.00 0.00 2.74
716 747 4.220821 CCTGAGAGTCCTAGCAAACAGTAA 59.779 45.833 0.00 0.00 0.00 2.24
717 748 5.105146 CCTGAGAGTCCTAGCAAACAGTAAT 60.105 44.000 0.00 0.00 0.00 1.89
718 749 6.096987 CCTGAGAGTCCTAGCAAACAGTAATA 59.903 42.308 0.00 0.00 0.00 0.98
719 750 7.363880 CCTGAGAGTCCTAGCAAACAGTAATAA 60.364 40.741 0.00 0.00 0.00 1.40
720 751 7.321153 TGAGAGTCCTAGCAAACAGTAATAAC 58.679 38.462 0.00 0.00 0.00 1.89
721 752 7.178628 TGAGAGTCCTAGCAAACAGTAATAACT 59.821 37.037 0.00 0.00 35.91 2.24
722 753 7.908453 AGAGTCCTAGCAAACAGTAATAACTT 58.092 34.615 0.00 0.00 31.97 2.66
723 754 9.032624 AGAGTCCTAGCAAACAGTAATAACTTA 57.967 33.333 0.00 0.00 31.97 2.24
724 755 8.999220 AGTCCTAGCAAACAGTAATAACTTAC 57.001 34.615 0.00 0.00 37.99 2.34
725 756 8.591072 AGTCCTAGCAAACAGTAATAACTTACA 58.409 33.333 0.00 0.00 39.81 2.41
787 824 1.205417 TGTACTACACGCTTTAGGCCC 59.795 52.381 0.00 0.00 37.74 5.80
791 828 2.156098 CTACACGCTTTAGGCCCAAAA 58.844 47.619 0.00 0.00 37.74 2.44
803 840 4.806640 AGGCCCAAAAGTTGAATGTATG 57.193 40.909 0.00 0.00 0.00 2.39
838 879 6.719370 TCCCAGTAAAGTATGTCAAAGCAAAT 59.281 34.615 0.00 0.00 0.00 2.32
857 898 3.788333 ATTGCATTGGTCCGATTTCTG 57.212 42.857 0.00 0.00 0.00 3.02
860 901 2.945008 TGCATTGGTCCGATTTCTGATC 59.055 45.455 0.00 0.00 0.00 2.92
861 902 2.945008 GCATTGGTCCGATTTCTGATCA 59.055 45.455 0.00 0.00 0.00 2.92
862 903 3.003068 GCATTGGTCCGATTTCTGATCAG 59.997 47.826 17.07 17.07 0.00 2.90
864 905 3.526931 TGGTCCGATTTCTGATCAGAC 57.473 47.619 25.07 12.83 37.14 3.51
865 906 3.099905 TGGTCCGATTTCTGATCAGACT 58.900 45.455 25.07 15.16 37.14 3.24
867 908 3.131223 GGTCCGATTTCTGATCAGACTCA 59.869 47.826 25.07 12.39 37.14 3.41
870 911 6.295011 GGTCCGATTTCTGATCAGACTCATAT 60.295 42.308 25.07 12.78 37.14 1.78
871 912 7.094162 GGTCCGATTTCTGATCAGACTCATATA 60.094 40.741 25.07 5.90 37.14 0.86
872 913 8.465999 GTCCGATTTCTGATCAGACTCATATAT 58.534 37.037 25.07 9.58 37.14 0.86
925 968 5.193663 TCTCTGTATATGCTCTTGTCAGC 57.806 43.478 0.00 0.00 40.13 4.26
943 986 1.486726 AGCTTGGTCTGCCCTATACAC 59.513 52.381 0.00 0.00 0.00 2.90
957 1010 5.710984 CCCTATACACGTCTTGGATATCAC 58.289 45.833 4.83 0.00 29.91 3.06
958 1011 5.391449 CCTATACACGTCTTGGATATCACG 58.609 45.833 10.73 10.73 29.91 4.35
960 1013 1.136305 ACACGTCTTGGATATCACGGG 59.864 52.381 12.53 12.53 41.52 5.28
961 1014 1.407618 CACGTCTTGGATATCACGGGA 59.592 52.381 15.25 0.00 37.91 5.14
963 1016 2.296471 ACGTCTTGGATATCACGGGATC 59.704 50.000 1.73 0.00 36.56 3.36
964 1017 2.296190 CGTCTTGGATATCACGGGATCA 59.704 50.000 1.73 0.00 34.89 2.92
965 1018 3.056536 CGTCTTGGATATCACGGGATCAT 60.057 47.826 1.73 0.00 34.89 2.45
980 1034 6.023603 ACGGGATCATAATACCATCCTACTT 58.976 40.000 0.00 0.00 35.27 2.24
1000 1054 3.934457 TCACAGTGAGCTCGAAATACA 57.066 42.857 9.64 0.00 0.00 2.29
1073 1127 4.233632 TCATGGATACCATTGCTGACAA 57.766 40.909 0.11 0.00 42.23 3.18
1158 1212 2.303549 CTAAGCAGAGGTCTGGCCGG 62.304 65.000 4.71 4.71 43.94 6.13
1167 1221 2.363795 TCTGGCCGGTTCGATCCT 60.364 61.111 12.43 0.00 0.00 3.24
1170 1224 3.782443 GGCCGGTTCGATCCTGGT 61.782 66.667 18.41 0.00 0.00 4.00
1228 1282 0.833949 GAGGTCCCTCCATGGAGTTC 59.166 60.000 34.49 24.06 40.44 3.01
1251 1305 0.598158 GTGGCGGAAAGTGTACGTCA 60.598 55.000 0.00 0.00 40.17 4.35
1252 1306 0.319083 TGGCGGAAAGTGTACGTCAT 59.681 50.000 0.00 0.00 37.30 3.06
1253 1307 0.997196 GGCGGAAAGTGTACGTCATC 59.003 55.000 0.00 0.00 31.66 2.92
1254 1308 1.403780 GGCGGAAAGTGTACGTCATCT 60.404 52.381 0.00 0.00 31.66 2.90
1255 1309 2.334838 GCGGAAAGTGTACGTCATCTT 58.665 47.619 0.00 0.00 0.00 2.40
1285 1339 6.790825 GCTCATGTGTTTACTTACGTTTTCTC 59.209 38.462 0.00 0.00 0.00 2.87
1303 1357 2.309755 TCTCCTTGTGGGCATTTCTGAT 59.690 45.455 0.00 0.00 34.39 2.90
1383 1438 1.569493 CAGTGTTTTGGGTCTCGCG 59.431 57.895 0.00 0.00 0.00 5.87
1743 1800 3.910648 ACGTAGAGCTTTACTGTGTTCC 58.089 45.455 12.18 0.00 0.00 3.62
1746 1803 4.386049 CGTAGAGCTTTACTGTGTTCCTTG 59.614 45.833 12.18 0.00 0.00 3.61
1761 1818 4.454161 TGTTCCTTGTGTATTCCGTCATTG 59.546 41.667 0.00 0.00 0.00 2.82
1824 2253 2.424601 CCTGCATGTGGAAATACTGTGG 59.575 50.000 0.00 0.00 0.00 4.17
1859 2288 1.882198 CGATGTTTTGATGTCACGCC 58.118 50.000 0.00 0.00 0.00 5.68
1882 2311 6.402442 GCCATGTTTTATTTCAGGCAATTGTC 60.402 38.462 0.50 0.50 40.29 3.18
1903 2332 0.524862 GATTGTGGGCTGCTTCTGTG 59.475 55.000 0.00 0.00 0.00 3.66
1964 2393 4.081406 TGGTAAGACCGTAAGAAGCTGTA 58.919 43.478 0.00 0.00 42.58 2.74
1983 2412 4.348486 TGTAGCCTCTCATTTCTCTGACT 58.652 43.478 0.00 0.00 0.00 3.41
1984 2413 4.774726 TGTAGCCTCTCATTTCTCTGACTT 59.225 41.667 0.00 0.00 0.00 3.01
2023 2453 8.504005 CGAGAAATAACATACTGTTCCTGTTTT 58.496 33.333 7.92 0.42 40.22 2.43
2048 2482 7.962934 GCGAATGCATGTATTAACTTGTAAA 57.037 32.000 9.16 0.00 42.15 2.01
2082 2526 2.523440 TGGAACAGGGTTCGTCTGT 58.477 52.632 3.30 0.00 46.22 3.41
2232 2676 3.393800 CAAGAGGAACAAGAAGAGCGAA 58.606 45.455 0.00 0.00 0.00 4.70
2244 2688 7.081349 ACAAGAAGAGCGAATAGATTAGATCG 58.919 38.462 0.00 0.00 33.89 3.69
2247 2691 5.811399 AGAGCGAATAGATTAGATCGGAG 57.189 43.478 0.00 0.00 33.89 4.63
2248 2692 4.638421 AGAGCGAATAGATTAGATCGGAGG 59.362 45.833 0.00 0.00 33.89 4.30
2249 2693 3.697045 AGCGAATAGATTAGATCGGAGGG 59.303 47.826 0.00 0.00 35.91 4.30
2299 2761 1.207593 GCCTAGTTTGTGTGCTGCG 59.792 57.895 0.00 0.00 0.00 5.18
2384 2857 3.481839 GTTTAAATTTAACCGCGACGCT 58.518 40.909 19.02 1.24 0.00 5.07
2401 2874 1.294659 GCTTGCGTCTGTTCTCCCAG 61.295 60.000 0.00 0.00 0.00 4.45
2423 2899 2.154567 ATTTGTGGGATGCTGCTCAT 57.845 45.000 0.00 0.00 38.32 2.90
2424 2900 2.804986 TTTGTGGGATGCTGCTCATA 57.195 45.000 0.00 0.00 35.05 2.15
2425 2901 3.301794 TTTGTGGGATGCTGCTCATAT 57.698 42.857 0.00 0.00 35.05 1.78
2427 2903 4.645863 TTGTGGGATGCTGCTCATATAT 57.354 40.909 0.00 0.00 35.05 0.86
2428 2904 4.645863 TGTGGGATGCTGCTCATATATT 57.354 40.909 0.00 0.00 35.05 1.28
2429 2905 4.329392 TGTGGGATGCTGCTCATATATTG 58.671 43.478 0.00 0.00 35.05 1.90
2463 2950 5.761726 TGCATATATTGGAAGTTGAGCTCAG 59.238 40.000 17.43 0.90 0.00 3.35
2485 2972 4.516698 AGATTCGTTGTGCTTTGTCAGAAT 59.483 37.500 0.00 0.00 0.00 2.40
2486 2973 3.607422 TCGTTGTGCTTTGTCAGAATG 57.393 42.857 0.00 0.00 37.54 2.67
2505 3011 2.725637 TGAGAATTGCTTGCTGCCATA 58.274 42.857 0.00 0.00 42.00 2.74
2516 3022 3.182341 TGCTGCCATATCCAAATTTGC 57.818 42.857 12.92 0.03 0.00 3.68
2524 3030 0.029300 ATCCAAATTTGCGATCGCGG 59.971 50.000 32.64 25.65 45.51 6.46
2525 3031 1.136565 CCAAATTTGCGATCGCGGT 59.863 52.632 32.64 19.21 45.51 5.68
2526 3032 1.133363 CCAAATTTGCGATCGCGGTG 61.133 55.000 32.64 23.44 45.51 4.94
2533 3040 0.927537 TGCGATCGCGGTGATTTTAG 59.072 50.000 32.64 0.11 45.51 1.85
2540 3047 1.789054 CGCGGTGATTTTAGTTTCGGC 60.789 52.381 0.00 0.00 0.00 5.54
2550 3057 0.927537 TAGTTTCGGCGATTGCGATG 59.072 50.000 11.76 0.00 44.10 3.84
2551 3058 0.739462 AGTTTCGGCGATTGCGATGA 60.739 50.000 11.76 0.00 44.10 2.92
2555 3062 1.296867 CGGCGATTGCGATGAACAC 60.297 57.895 0.00 0.00 44.10 3.32
2563 3070 1.362768 TGCGATGAACACTCATGCTC 58.637 50.000 0.00 0.00 42.60 4.26
2615 3123 0.038744 ATCTGGTCAAAGGGTGCAGG 59.961 55.000 0.00 0.00 0.00 4.85
2633 3141 1.828979 GGTTAAGCACCGGATTTGGA 58.171 50.000 9.46 0.00 35.12 3.53
2643 3151 2.290323 ACCGGATTTGGAAGTCAGAAGG 60.290 50.000 9.46 0.00 0.00 3.46
2677 3185 2.143876 AGTTTTCAGGTGGTGTTGCT 57.856 45.000 0.00 0.00 0.00 3.91
2712 3220 3.640257 ATGCACCTGGAGCTGCTGG 62.640 63.158 26.28 26.28 34.29 4.85
2718 3226 0.600057 CCTGGAGCTGCTGGAAAAAC 59.400 55.000 24.30 0.00 0.00 2.43
2732 3240 5.337813 GCTGGAAAAACCCATGAGATGATTT 60.338 40.000 0.00 0.00 38.00 2.17
2734 3242 7.169158 TGGAAAAACCCATGAGATGATTTAC 57.831 36.000 0.00 0.00 38.00 2.01
2786 3296 1.616628 CCTACCCCCAGCTCCAAGT 60.617 63.158 0.00 0.00 0.00 3.16
2790 3300 1.303282 CCCCCAGCTCCAAGTTACC 59.697 63.158 0.00 0.00 0.00 2.85
2793 3303 0.693049 CCCAGCTCCAAGTTACCAGT 59.307 55.000 0.00 0.00 0.00 4.00
2794 3304 1.339151 CCCAGCTCCAAGTTACCAGTC 60.339 57.143 0.00 0.00 0.00 3.51
2798 3309 1.071699 GCTCCAAGTTACCAGTCACCA 59.928 52.381 0.00 0.00 0.00 4.17
2816 3327 1.400494 CCACGCTATAAAACCTGCACC 59.600 52.381 0.00 0.00 0.00 5.01
2819 3330 1.379527 GCTATAAAACCTGCACCGCT 58.620 50.000 0.00 0.00 0.00 5.52
2823 3334 1.225376 TAAAACCTGCACCGCTCACG 61.225 55.000 0.00 0.00 39.67 4.35
2859 3370 4.617520 TCGCCGGCAAGAACAGCA 62.618 61.111 28.98 0.00 0.00 4.41
2860 3371 4.389576 CGCCGGCAAGAACAGCAC 62.390 66.667 28.98 0.00 0.00 4.40
2861 3372 4.043200 GCCGGCAAGAACAGCACC 62.043 66.667 24.80 0.00 0.00 5.01
2862 3373 3.365265 CCGGCAAGAACAGCACCC 61.365 66.667 0.00 0.00 0.00 4.61
2863 3374 2.594303 CGGCAAGAACAGCACCCA 60.594 61.111 0.00 0.00 0.00 4.51
2864 3375 2.908073 CGGCAAGAACAGCACCCAC 61.908 63.158 0.00 0.00 0.00 4.61
2866 3377 2.908073 GCAAGAACAGCACCCACGG 61.908 63.158 0.00 0.00 0.00 4.94
2867 3378 1.227823 CAAGAACAGCACCCACGGA 60.228 57.895 0.00 0.00 0.00 4.69
2868 3379 1.071471 AAGAACAGCACCCACGGAG 59.929 57.895 0.00 0.00 0.00 4.63
2869 3380 3.050275 GAACAGCACCCACGGAGC 61.050 66.667 0.00 0.00 39.54 4.70
2875 3386 1.295423 GCACCCACGGAGCTAAGAA 59.705 57.895 0.00 0.00 36.40 2.52
2900 3411 1.148723 GAGCCATGGAGCAGAGCAT 59.851 57.895 18.40 0.00 34.23 3.79
2920 3431 4.831307 CGTCCGTCTTCCTCGGCG 62.831 72.222 0.00 0.00 46.49 6.46
2928 3439 3.398353 CTTCCTCGGCGTCCTCGTC 62.398 68.421 6.85 0.00 39.49 4.20
2984 3495 2.188829 TCCTCCACGACAACGACGT 61.189 57.895 0.00 0.00 44.83 4.34
3192 3715 4.530857 GCGGGGAGGGACGATGTG 62.531 72.222 0.00 0.00 0.00 3.21
3193 3716 2.758327 CGGGGAGGGACGATGTGA 60.758 66.667 0.00 0.00 0.00 3.58
3194 3717 2.786495 CGGGGAGGGACGATGTGAG 61.786 68.421 0.00 0.00 0.00 3.51
3195 3718 1.686110 GGGGAGGGACGATGTGAGT 60.686 63.158 0.00 0.00 0.00 3.41
3196 3719 1.265454 GGGGAGGGACGATGTGAGTT 61.265 60.000 0.00 0.00 0.00 3.01
3198 3721 0.175989 GGAGGGACGATGTGAGTTCC 59.824 60.000 0.00 0.00 37.53 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.141517 GCTCAGATTCCATCCACATCG 58.858 52.381 0.00 0.00 0.00 3.84
1 2 2.502295 GGCTCAGATTCCATCCACATC 58.498 52.381 0.00 0.00 0.00 3.06
2 3 1.202734 CGGCTCAGATTCCATCCACAT 60.203 52.381 0.00 0.00 0.00 3.21
3 4 0.178767 CGGCTCAGATTCCATCCACA 59.821 55.000 0.00 0.00 0.00 4.17
4 5 1.162800 GCGGCTCAGATTCCATCCAC 61.163 60.000 0.00 0.00 0.00 4.02
5 6 1.146930 GCGGCTCAGATTCCATCCA 59.853 57.895 0.00 0.00 0.00 3.41
6 7 0.179034 AAGCGGCTCAGATTCCATCC 60.179 55.000 1.45 0.00 0.00 3.51
7 8 1.673168 AAAGCGGCTCAGATTCCATC 58.327 50.000 1.45 0.00 0.00 3.51
8 9 2.019984 GAAAAGCGGCTCAGATTCCAT 58.980 47.619 1.45 0.00 0.00 3.41
27 28 2.088423 ACAACAAACGAGCAAACAGGA 58.912 42.857 0.00 0.00 0.00 3.86
29 30 4.901866 AAAACAACAAACGAGCAAACAG 57.098 36.364 0.00 0.00 0.00 3.16
32 33 4.387256 CAGGAAAAACAACAAACGAGCAAA 59.613 37.500 0.00 0.00 0.00 3.68
35 36 3.765026 TCAGGAAAAACAACAAACGAGC 58.235 40.909 0.00 0.00 0.00 5.03
36 37 5.220209 GCTTTCAGGAAAAACAACAAACGAG 60.220 40.000 0.00 0.00 0.00 4.18
37 38 4.623595 GCTTTCAGGAAAAACAACAAACGA 59.376 37.500 0.00 0.00 0.00 3.85
38 39 4.490160 CGCTTTCAGGAAAAACAACAAACG 60.490 41.667 0.00 0.00 0.00 3.60
39 40 4.623595 TCGCTTTCAGGAAAAACAACAAAC 59.376 37.500 0.00 0.00 0.00 2.93
53 54 1.569708 GCTCTCTCCATCGCTTTCAG 58.430 55.000 0.00 0.00 0.00 3.02
64 65 2.821810 GGCAAAGCCGCTCTCTCC 60.822 66.667 0.00 0.00 39.62 3.71
81 82 1.755179 TCTACCTACCTTTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
92 93 7.066766 TCCTAAAGAACTCACGAATCTACCTAC 59.933 40.741 0.00 0.00 0.00 3.18
103 104 8.648968 GTTTCTTCTTATCCTAAAGAACTCACG 58.351 37.037 0.00 0.00 39.86 4.35
124 127 3.824443 CCATGTTTACCCCGAAAGTTTCT 59.176 43.478 13.56 0.00 0.00 2.52
125 128 3.570975 ACCATGTTTACCCCGAAAGTTTC 59.429 43.478 5.47 5.47 0.00 2.78
155 158 6.037830 CAGAAAAGGGACGAAGAAAAACTACA 59.962 38.462 0.00 0.00 0.00 2.74
165 183 2.169832 TCAGCAGAAAAGGGACGAAG 57.830 50.000 0.00 0.00 0.00 3.79
185 203 2.885266 AGCTCGTCTGCTAATAATCCGA 59.115 45.455 0.00 0.00 42.10 4.55
201 219 3.715495 ACAGAAGCATATTCAGAGCTCG 58.285 45.455 8.37 3.55 37.70 5.03
203 221 4.634883 CACAACAGAAGCATATTCAGAGCT 59.365 41.667 0.00 0.00 41.03 4.09
205 223 4.334759 CCCACAACAGAAGCATATTCAGAG 59.665 45.833 0.00 0.00 0.00 3.35
221 239 4.010349 CCCATCTCTTCTTTACCCACAAC 58.990 47.826 0.00 0.00 0.00 3.32
225 243 1.209504 CGCCCATCTCTTCTTTACCCA 59.790 52.381 0.00 0.00 0.00 4.51
242 262 2.883267 AATCAGCAGAGAAGGCCGCC 62.883 60.000 0.00 0.00 0.00 6.13
243 263 1.451028 AATCAGCAGAGAAGGCCGC 60.451 57.895 0.00 0.00 0.00 6.53
256 276 1.926511 GCAACCGAGGGCACAATCAG 61.927 60.000 0.00 0.00 0.00 2.90
257 277 1.971167 GCAACCGAGGGCACAATCA 60.971 57.895 0.00 0.00 0.00 2.57
262 282 3.056328 GGAAGCAACCGAGGGCAC 61.056 66.667 0.00 0.00 0.00 5.01
279 307 0.385390 AAGTCCTTGGCTTTGTTGCG 59.615 50.000 0.00 0.00 0.00 4.85
280 308 1.136891 ACAAGTCCTTGGCTTTGTTGC 59.863 47.619 11.45 0.00 44.45 4.17
284 312 4.761739 TCAATCTACAAGTCCTTGGCTTTG 59.238 41.667 11.45 9.04 44.45 2.77
285 313 4.985538 TCAATCTACAAGTCCTTGGCTTT 58.014 39.130 11.45 0.00 44.45 3.51
288 316 7.573968 AAATATCAATCTACAAGTCCTTGGC 57.426 36.000 11.45 0.00 44.45 4.52
306 334 9.063615 ACCGGTACTTTATGGATCAAAAATATC 57.936 33.333 4.49 0.00 0.00 1.63
307 335 8.990163 ACCGGTACTTTATGGATCAAAAATAT 57.010 30.769 4.49 0.00 0.00 1.28
308 336 8.269317 AGACCGGTACTTTATGGATCAAAAATA 58.731 33.333 7.34 0.00 0.00 1.40
311 339 6.057321 AGACCGGTACTTTATGGATCAAAA 57.943 37.500 7.34 0.00 0.00 2.44
329 357 4.262506 GGGGATCTAACCAGATAAAGACCG 60.263 50.000 0.00 0.00 41.78 4.79
351 379 0.958822 CAAAACCGTCCCCTTCAAGG 59.041 55.000 0.00 0.00 34.30 3.61
352 380 0.958822 CCAAAACCGTCCCCTTCAAG 59.041 55.000 0.00 0.00 0.00 3.02
358 386 2.196502 ACCACCAAAACCGTCCCC 59.803 61.111 0.00 0.00 0.00 4.81
368 396 1.774110 ATCACTGCAAACACCACCAA 58.226 45.000 0.00 0.00 0.00 3.67
371 399 2.865551 CCAAAATCACTGCAAACACCAC 59.134 45.455 0.00 0.00 0.00 4.16
374 402 2.865551 CCACCAAAATCACTGCAAACAC 59.134 45.455 0.00 0.00 0.00 3.32
377 405 2.741228 GCACCACCAAAATCACTGCAAA 60.741 45.455 0.00 0.00 0.00 3.68
397 425 7.427606 CGAGAGAAAAATGACATTCAGTTATGC 59.572 37.037 0.05 0.00 33.14 3.14
410 438 7.615582 ATCATGTTAAGCGAGAGAAAAATGA 57.384 32.000 0.00 0.00 32.10 2.57
412 440 8.044060 TGAATCATGTTAAGCGAGAGAAAAAT 57.956 30.769 0.00 0.00 0.00 1.82
413 441 7.433708 TGAATCATGTTAAGCGAGAGAAAAA 57.566 32.000 0.00 0.00 0.00 1.94
417 445 7.433708 TTTTTGAATCATGTTAAGCGAGAGA 57.566 32.000 0.00 0.00 0.00 3.10
499 527 4.885907 CCCATTCAGGCATGATATATGACC 59.114 45.833 11.97 0.00 34.73 4.02
509 537 3.116091 GGTACCCCATTCAGGCATG 57.884 57.895 0.00 0.00 35.39 4.06
555 586 6.323482 TCATTCATTTCTGACCAAAACTTCCA 59.677 34.615 0.00 0.00 0.00 3.53
556 587 6.748132 TCATTCATTTCTGACCAAAACTTCC 58.252 36.000 0.00 0.00 0.00 3.46
558 589 7.954835 TCATCATTCATTTCTGACCAAAACTT 58.045 30.769 0.00 0.00 0.00 2.66
559 590 7.528996 TCATCATTCATTTCTGACCAAAACT 57.471 32.000 0.00 0.00 0.00 2.66
560 591 8.592105 TTTCATCATTCATTTCTGACCAAAAC 57.408 30.769 0.00 0.00 0.00 2.43
561 592 7.874016 CCTTTCATCATTCATTTCTGACCAAAA 59.126 33.333 0.00 0.00 0.00 2.44
562 593 7.380536 CCTTTCATCATTCATTTCTGACCAAA 58.619 34.615 0.00 0.00 0.00 3.28
606 637 7.068103 TCGGATGCCTGTTTAACATTCAATATT 59.932 33.333 0.00 0.00 0.00 1.28
607 638 6.545666 TCGGATGCCTGTTTAACATTCAATAT 59.454 34.615 0.00 0.00 0.00 1.28
614 645 3.270877 GAGTCGGATGCCTGTTTAACAT 58.729 45.455 0.00 0.00 0.00 2.71
625 656 2.271800 CTGGTAAGTTGAGTCGGATGC 58.728 52.381 0.00 0.00 0.00 3.91
644 675 1.340991 GGACTCTCTCTCAGGCTGACT 60.341 57.143 14.43 0.00 0.00 3.41
645 676 1.102978 GGACTCTCTCTCAGGCTGAC 58.897 60.000 14.43 0.62 0.00 3.51
646 677 0.998928 AGGACTCTCTCTCAGGCTGA 59.001 55.000 17.68 17.68 0.00 4.26
647 678 2.575532 CTAGGACTCTCTCTCAGGCTG 58.424 57.143 8.58 8.58 0.00 4.85
648 679 1.133792 GCTAGGACTCTCTCTCAGGCT 60.134 57.143 0.00 0.00 0.00 4.58
649 680 1.318576 GCTAGGACTCTCTCTCAGGC 58.681 60.000 0.00 0.00 0.00 4.85
650 681 2.727123 TGCTAGGACTCTCTCTCAGG 57.273 55.000 0.00 0.00 0.00 3.86
651 682 3.761218 TGTTTGCTAGGACTCTCTCTCAG 59.239 47.826 0.00 0.00 0.00 3.35
652 683 3.761218 CTGTTTGCTAGGACTCTCTCTCA 59.239 47.826 0.00 0.00 0.00 3.27
653 684 3.761752 ACTGTTTGCTAGGACTCTCTCTC 59.238 47.826 0.00 0.00 0.00 3.20
654 685 3.773560 ACTGTTTGCTAGGACTCTCTCT 58.226 45.455 0.00 0.00 0.00 3.10
655 686 5.646577 TTACTGTTTGCTAGGACTCTCTC 57.353 43.478 0.00 0.00 0.00 3.20
656 687 7.397761 AGTTATTACTGTTTGCTAGGACTCTCT 59.602 37.037 0.00 0.00 31.99 3.10
657 688 7.548967 AGTTATTACTGTTTGCTAGGACTCTC 58.451 38.462 0.00 0.00 31.99 3.20
658 689 7.483580 AGTTATTACTGTTTGCTAGGACTCT 57.516 36.000 0.00 0.00 31.99 3.24
659 690 9.085250 GTAAGTTATTACTGTTTGCTAGGACTC 57.915 37.037 0.00 0.00 38.61 3.36
660 691 8.591072 TGTAAGTTATTACTGTTTGCTAGGACT 58.409 33.333 0.00 0.00 41.63 3.85
661 692 8.767478 TGTAAGTTATTACTGTTTGCTAGGAC 57.233 34.615 0.00 0.00 41.63 3.85
662 693 9.431887 CTTGTAAGTTATTACTGTTTGCTAGGA 57.568 33.333 0.00 0.00 41.63 2.94
663 694 9.216117 ACTTGTAAGTTATTACTGTTTGCTAGG 57.784 33.333 0.00 0.00 41.63 3.02
665 696 9.767228 TGACTTGTAAGTTATTACTGTTTGCTA 57.233 29.630 0.00 0.00 41.63 3.49
666 697 8.671384 TGACTTGTAAGTTATTACTGTTTGCT 57.329 30.769 0.00 0.00 41.63 3.91
667 698 7.534239 GCTGACTTGTAAGTTATTACTGTTTGC 59.466 37.037 0.00 4.60 41.63 3.68
668 699 8.015658 GGCTGACTTGTAAGTTATTACTGTTTG 58.984 37.037 0.00 0.00 41.63 2.93
669 700 7.937394 AGGCTGACTTGTAAGTTATTACTGTTT 59.063 33.333 0.00 0.00 41.63 2.83
670 701 7.387948 CAGGCTGACTTGTAAGTTATTACTGTT 59.612 37.037 9.42 0.00 41.63 3.16
671 702 6.874134 CAGGCTGACTTGTAAGTTATTACTGT 59.126 38.462 9.42 0.00 41.63 3.55
672 703 7.097192 TCAGGCTGACTTGTAAGTTATTACTG 58.903 38.462 14.43 5.30 41.63 2.74
673 704 7.178628 TCTCAGGCTGACTTGTAAGTTATTACT 59.821 37.037 14.43 0.00 41.63 2.24
674 705 7.321153 TCTCAGGCTGACTTGTAAGTTATTAC 58.679 38.462 14.43 0.00 39.88 1.89
675 706 7.178628 ACTCTCAGGCTGACTTGTAAGTTATTA 59.821 37.037 14.43 0.00 39.88 0.98
676 707 6.014156 ACTCTCAGGCTGACTTGTAAGTTATT 60.014 38.462 14.43 0.00 39.88 1.40
677 708 5.482175 ACTCTCAGGCTGACTTGTAAGTTAT 59.518 40.000 14.43 0.00 39.88 1.89
678 709 4.833380 ACTCTCAGGCTGACTTGTAAGTTA 59.167 41.667 14.43 0.00 39.88 2.24
679 710 3.643792 ACTCTCAGGCTGACTTGTAAGTT 59.356 43.478 14.43 0.00 39.88 2.66
680 711 3.235200 ACTCTCAGGCTGACTTGTAAGT 58.765 45.455 14.43 7.48 43.16 2.24
681 712 3.367910 GGACTCTCAGGCTGACTTGTAAG 60.368 52.174 14.43 1.89 0.00 2.34
682 713 2.563179 GGACTCTCAGGCTGACTTGTAA 59.437 50.000 14.43 0.00 0.00 2.41
683 714 2.171840 GGACTCTCAGGCTGACTTGTA 58.828 52.381 14.43 0.00 0.00 2.41
684 715 0.972883 GGACTCTCAGGCTGACTTGT 59.027 55.000 14.43 12.16 0.00 3.16
685 716 1.265236 AGGACTCTCAGGCTGACTTG 58.735 55.000 14.43 8.94 0.00 3.16
686 717 2.733956 CTAGGACTCTCAGGCTGACTT 58.266 52.381 14.43 2.77 0.00 3.01
687 718 1.684869 GCTAGGACTCTCAGGCTGACT 60.685 57.143 14.43 11.33 0.00 3.41
688 719 0.744281 GCTAGGACTCTCAGGCTGAC 59.256 60.000 14.43 3.46 0.00 3.51
689 720 0.332972 TGCTAGGACTCTCAGGCTGA 59.667 55.000 17.68 17.68 0.00 4.26
690 721 1.189752 TTGCTAGGACTCTCAGGCTG 58.810 55.000 8.58 8.58 0.00 4.85
691 722 1.552792 GTTTGCTAGGACTCTCAGGCT 59.447 52.381 0.00 0.00 0.00 4.58
692 723 1.276421 TGTTTGCTAGGACTCTCAGGC 59.724 52.381 0.00 0.00 0.00 4.85
693 724 2.564947 ACTGTTTGCTAGGACTCTCAGG 59.435 50.000 0.00 0.00 0.00 3.86
694 725 3.951775 ACTGTTTGCTAGGACTCTCAG 57.048 47.619 0.00 0.00 0.00 3.35
695 726 7.178628 AGTTATTACTGTTTGCTAGGACTCTCA 59.821 37.037 0.00 0.00 31.99 3.27
696 727 7.548967 AGTTATTACTGTTTGCTAGGACTCTC 58.451 38.462 0.00 0.00 31.99 3.20
697 728 7.483580 AGTTATTACTGTTTGCTAGGACTCT 57.516 36.000 0.00 0.00 31.99 3.24
698 729 9.085250 GTAAGTTATTACTGTTTGCTAGGACTC 57.915 37.037 0.00 0.00 38.61 3.36
699 730 8.591072 TGTAAGTTATTACTGTTTGCTAGGACT 58.409 33.333 0.00 0.00 41.63 3.85
700 731 8.767478 TGTAAGTTATTACTGTTTGCTAGGAC 57.233 34.615 0.00 0.00 41.63 3.85
701 732 9.431887 CTTGTAAGTTATTACTGTTTGCTAGGA 57.568 33.333 0.00 0.00 41.63 2.94
702 733 9.216117 ACTTGTAAGTTATTACTGTTTGCTAGG 57.784 33.333 0.00 0.00 41.63 3.02
704 735 9.767228 TGACTTGTAAGTTATTACTGTTTGCTA 57.233 29.630 0.00 0.00 41.63 3.49
705 736 8.671384 TGACTTGTAAGTTATTACTGTTTGCT 57.329 30.769 0.00 0.00 41.63 3.91
706 737 7.534239 GCTGACTTGTAAGTTATTACTGTTTGC 59.466 37.037 0.00 4.60 41.63 3.68
707 738 8.015658 GGCTGACTTGTAAGTTATTACTGTTTG 58.984 37.037 0.00 0.00 41.63 2.93
708 739 7.937394 AGGCTGACTTGTAAGTTATTACTGTTT 59.063 33.333 0.00 0.00 41.63 2.83
709 740 7.387948 CAGGCTGACTTGTAAGTTATTACTGTT 59.612 37.037 9.42 0.00 41.63 3.16
710 741 6.874134 CAGGCTGACTTGTAAGTTATTACTGT 59.126 38.462 9.42 0.00 41.63 3.55
711 742 7.097192 TCAGGCTGACTTGTAAGTTATTACTG 58.903 38.462 14.43 5.30 41.63 2.74
712 743 7.178628 TCTCAGGCTGACTTGTAAGTTATTACT 59.821 37.037 14.43 0.00 41.63 2.24
713 744 7.321153 TCTCAGGCTGACTTGTAAGTTATTAC 58.679 38.462 14.43 0.00 39.88 1.89
714 745 7.178628 ACTCTCAGGCTGACTTGTAAGTTATTA 59.821 37.037 14.43 0.00 39.88 0.98
715 746 6.014156 ACTCTCAGGCTGACTTGTAAGTTATT 60.014 38.462 14.43 0.00 39.88 1.40
716 747 5.482175 ACTCTCAGGCTGACTTGTAAGTTAT 59.518 40.000 14.43 0.00 39.88 1.89
717 748 4.833380 ACTCTCAGGCTGACTTGTAAGTTA 59.167 41.667 14.43 0.00 39.88 2.24
718 749 3.643792 ACTCTCAGGCTGACTTGTAAGTT 59.356 43.478 14.43 0.00 39.88 2.66
719 750 3.235200 ACTCTCAGGCTGACTTGTAAGT 58.765 45.455 14.43 7.48 43.16 2.24
720 751 3.367910 GGACTCTCAGGCTGACTTGTAAG 60.368 52.174 14.43 1.89 0.00 2.34
721 752 2.563179 GGACTCTCAGGCTGACTTGTAA 59.437 50.000 14.43 0.00 0.00 2.41
722 753 2.171840 GGACTCTCAGGCTGACTTGTA 58.828 52.381 14.43 0.00 0.00 2.41
723 754 0.972883 GGACTCTCAGGCTGACTTGT 59.027 55.000 14.43 12.16 0.00 3.16
724 755 1.265236 AGGACTCTCAGGCTGACTTG 58.735 55.000 14.43 8.94 0.00 3.16
725 756 2.733956 CTAGGACTCTCAGGCTGACTT 58.266 52.381 14.43 2.77 0.00 3.01
787 824 9.965824 AGTTTAGAACCATACATTCAACTTTTG 57.034 29.630 0.00 0.00 0.00 2.44
791 828 6.884836 GGGAGTTTAGAACCATACATTCAACT 59.115 38.462 0.00 0.00 29.62 3.16
803 840 7.392418 ACATACTTTACTGGGAGTTTAGAACC 58.608 38.462 0.00 0.00 0.00 3.62
814 851 5.957842 TTGCTTTGACATACTTTACTGGG 57.042 39.130 0.00 0.00 0.00 4.45
838 879 2.789213 TCAGAAATCGGACCAATGCAA 58.211 42.857 0.00 0.00 0.00 4.08
847 888 6.907853 ATATGAGTCTGATCAGAAATCGGA 57.092 37.500 26.70 17.55 39.48 4.55
891 934 5.771469 CATATACAGAGAAGCAGGACAGAG 58.229 45.833 0.00 0.00 0.00 3.35
905 948 5.354767 CAAGCTGACAAGAGCATATACAGA 58.645 41.667 0.00 0.00 41.83 3.41
925 968 1.480954 ACGTGTATAGGGCAGACCAAG 59.519 52.381 0.00 0.00 43.89 3.61
943 986 2.296190 TGATCCCGTGATATCCAAGACG 59.704 50.000 0.00 3.36 0.00 4.18
957 1010 6.154534 TGAAGTAGGATGGTATTATGATCCCG 59.845 42.308 0.00 0.00 37.01 5.14
958 1011 7.038302 TGTGAAGTAGGATGGTATTATGATCCC 60.038 40.741 0.00 0.00 37.01 3.85
960 1013 8.589338 ACTGTGAAGTAGGATGGTATTATGATC 58.411 37.037 0.00 0.00 0.00 2.92
961 1014 8.370940 CACTGTGAAGTAGGATGGTATTATGAT 58.629 37.037 0.32 0.00 0.00 2.45
963 1016 7.726216 TCACTGTGAAGTAGGATGGTATTATG 58.274 38.462 8.27 0.00 0.00 1.90
964 1017 7.472100 GCTCACTGTGAAGTAGGATGGTATTAT 60.472 40.741 12.16 0.00 0.00 1.28
965 1018 6.183360 GCTCACTGTGAAGTAGGATGGTATTA 60.183 42.308 12.16 0.00 0.00 0.98
980 1034 3.934457 TGTATTTCGAGCTCACTGTGA 57.066 42.857 15.40 10.50 0.00 3.58
1000 1054 5.089970 TCAGAATGTTCCGACATCTTCAT 57.910 39.130 0.00 0.00 45.58 2.57
1080 1134 7.785033 TCATGATATTGTCAGACTTCTGCTTA 58.215 34.615 1.31 0.00 43.46 3.09
1158 1212 1.630148 CGACTGAACCAGGATCGAAC 58.370 55.000 0.00 0.00 33.71 3.95
1167 1221 0.678950 TCACATCAGCGACTGAACCA 59.321 50.000 12.43 0.00 44.04 3.67
1170 1224 3.059884 GTTCTTCACATCAGCGACTGAA 58.940 45.455 12.43 0.00 44.04 3.02
1228 1282 0.953960 GTACACTTTCCGCCACCCAG 60.954 60.000 0.00 0.00 0.00 4.45
1251 1305 9.319143 GTAAGTAAACACATGAGCAGATAAGAT 57.681 33.333 0.00 0.00 0.00 2.40
1252 1306 7.488150 CGTAAGTAAACACATGAGCAGATAAGA 59.512 37.037 0.00 0.00 0.00 2.10
1253 1307 7.613146 CGTAAGTAAACACATGAGCAGATAAG 58.387 38.462 0.00 0.00 0.00 1.73
1254 1308 7.520119 CGTAAGTAAACACATGAGCAGATAA 57.480 36.000 0.00 0.00 0.00 1.75
1285 1339 1.134907 GCATCAGAAATGCCCACAAGG 60.135 52.381 0.00 0.00 39.01 3.61
1303 1357 6.808212 GCAGCTACAATGATAAAAGAAAAGCA 59.192 34.615 0.00 0.00 0.00 3.91
1383 1438 3.619038 CGAAGAAAACCCAGATAGCTGTC 59.381 47.826 7.31 1.53 40.63 3.51
1574 1629 5.396436 CGGGGTATTTCAGAAGACCTACATT 60.396 44.000 13.48 0.00 44.70 2.71
1743 1800 4.000325 TCACCAATGACGGAATACACAAG 59.000 43.478 0.00 0.00 0.00 3.16
1746 1803 4.188462 TGATCACCAATGACGGAATACAC 58.812 43.478 0.00 0.00 37.79 2.90
1761 1818 9.125026 ACTTTCCTATTTGATGTAATGATCACC 57.875 33.333 0.00 0.00 31.92 4.02
1824 2253 1.590932 ATCGCCTGATGATGAACAGC 58.409 50.000 0.00 0.00 32.21 4.40
1840 2269 1.196581 TGGCGTGACATCAAAACATCG 59.803 47.619 0.00 0.00 0.00 3.84
1859 2288 6.183360 CCGACAATTGCCTGAAATAAAACATG 60.183 38.462 5.05 0.00 0.00 3.21
1882 2311 1.377725 AGAAGCAGCCCACAATCCG 60.378 57.895 0.00 0.00 0.00 4.18
1903 2332 1.973812 GTTGAACCAGCTCCCAGCC 60.974 63.158 0.00 0.00 43.77 4.85
1964 2393 4.906747 AAAGTCAGAGAAATGAGAGGCT 57.093 40.909 0.00 0.00 0.00 4.58
2047 2481 5.139727 TGTTCCAGGTGATCAGAAAATGTT 58.860 37.500 0.00 0.00 0.00 2.71
2048 2482 4.728772 TGTTCCAGGTGATCAGAAAATGT 58.271 39.130 0.00 0.00 0.00 2.71
2205 2649 0.110486 TCTTGTTCCTCTTGGTGGGC 59.890 55.000 0.00 0.00 34.23 5.36
2232 2676 4.020543 GAGTGCCCTCCGATCTAATCTAT 58.979 47.826 0.00 0.00 0.00 1.98
2244 2688 3.070018 CGATAAATCATGAGTGCCCTCC 58.930 50.000 0.09 0.00 36.86 4.30
2247 2691 3.733337 ACTCGATAAATCATGAGTGCCC 58.267 45.455 0.09 0.00 40.03 5.36
2299 2761 2.826128 TCTCACATGACACTACAGGTCC 59.174 50.000 0.00 0.00 32.49 4.46
2384 2857 0.468226 AACTGGGAGAACAGACGCAA 59.532 50.000 0.00 0.00 40.97 4.85
2401 2874 2.754552 TGAGCAGCATCCCACAAATAAC 59.245 45.455 0.00 0.00 0.00 1.89
2424 2900 9.017509 CCAATATATGCAGACAACTTCCAATAT 57.982 33.333 0.00 0.00 0.00 1.28
2425 2901 8.217111 TCCAATATATGCAGACAACTTCCAATA 58.783 33.333 0.00 0.00 0.00 1.90
2427 2903 6.422333 TCCAATATATGCAGACAACTTCCAA 58.578 36.000 0.00 0.00 0.00 3.53
2428 2904 6.000246 TCCAATATATGCAGACAACTTCCA 58.000 37.500 0.00 0.00 0.00 3.53
2429 2905 6.543831 ACTTCCAATATATGCAGACAACTTCC 59.456 38.462 0.00 0.00 0.00 3.46
2463 2950 3.878086 TCTGACAAAGCACAACGAATC 57.122 42.857 0.00 0.00 0.00 2.52
2496 3002 2.481622 CGCAAATTTGGATATGGCAGCA 60.482 45.455 19.47 0.00 0.00 4.41
2505 3011 0.029300 CCGCGATCGCAAATTTGGAT 59.971 50.000 36.45 18.06 42.06 3.41
2516 3022 3.594312 GAAACTAAAATCACCGCGATCG 58.406 45.455 11.69 11.69 31.11 3.69
2524 3030 3.542310 GCAATCGCCGAAACTAAAATCAC 59.458 43.478 0.00 0.00 0.00 3.06
2525 3031 3.726486 CGCAATCGCCGAAACTAAAATCA 60.726 43.478 0.00 0.00 33.11 2.57
2526 3032 2.776225 CGCAATCGCCGAAACTAAAATC 59.224 45.455 0.00 0.00 33.11 2.17
2533 3040 0.096281 TTCATCGCAATCGCCGAAAC 59.904 50.000 0.00 0.00 38.31 2.78
2540 3047 2.848376 GCATGAGTGTTCATCGCAATCG 60.848 50.000 0.00 0.00 42.12 3.34
2550 3057 1.669779 GCATGGAGAGCATGAGTGTTC 59.330 52.381 0.00 0.00 35.98 3.18
2551 3058 1.747709 GCATGGAGAGCATGAGTGTT 58.252 50.000 0.00 0.00 32.09 3.32
2555 3062 3.331319 GCGCATGGAGAGCATGAG 58.669 61.111 0.30 0.00 43.16 2.90
2563 3070 1.657094 GCAAGAAATTTGCGCATGGAG 59.343 47.619 12.75 0.00 35.58 3.86
2571 3078 1.453148 GACAGCACGCAAGAAATTTGC 59.547 47.619 0.00 1.93 41.71 3.68
2584 3091 2.143122 TGACCAGATTTTCGACAGCAC 58.857 47.619 0.00 0.00 0.00 4.40
2586 3093 3.365364 CCTTTGACCAGATTTTCGACAGC 60.365 47.826 0.00 0.00 0.00 4.40
2615 3123 2.817844 ACTTCCAAATCCGGTGCTTAAC 59.182 45.455 0.00 0.00 0.00 2.01
2625 3133 3.753797 GTCACCTTCTGACTTCCAAATCC 59.246 47.826 0.00 0.00 45.38 3.01
2643 3151 5.449999 CCTGAAAACTAACAACTTGGGTCAC 60.450 44.000 0.00 0.00 0.00 3.67
2702 3210 0.827507 TGGGTTTTTCCAGCAGCTCC 60.828 55.000 0.00 0.00 38.11 4.70
2712 3220 9.657419 ATTTGTAAATCATCTCATGGGTTTTTC 57.343 29.630 0.00 0.00 0.00 2.29
2718 3226 5.764686 TCCGATTTGTAAATCATCTCATGGG 59.235 40.000 15.36 7.41 43.85 4.00
2732 3240 0.323302 TGCCTGCACTCCGATTTGTA 59.677 50.000 0.00 0.00 0.00 2.41
2734 3242 1.798735 CTGCCTGCACTCCGATTTG 59.201 57.895 0.00 0.00 0.00 2.32
2786 3296 4.804868 TTTATAGCGTGGTGACTGGTAA 57.195 40.909 0.00 0.00 0.00 2.85
2790 3300 3.370978 CAGGTTTTATAGCGTGGTGACTG 59.629 47.826 0.00 0.00 0.00 3.51
2793 3303 2.289756 TGCAGGTTTTATAGCGTGGTGA 60.290 45.455 0.00 0.00 0.00 4.02
2794 3304 2.080693 TGCAGGTTTTATAGCGTGGTG 58.919 47.619 0.00 0.00 0.00 4.17
2798 3309 1.365699 CGGTGCAGGTTTTATAGCGT 58.634 50.000 0.00 0.00 0.00 5.07
2819 3330 2.596338 TGAGTGGGAGACGCGTGA 60.596 61.111 20.70 0.00 33.90 4.35
2823 3334 2.048127 GTGGTGAGTGGGAGACGC 60.048 66.667 0.00 0.00 0.00 5.19
2859 3370 0.608640 CTGTTCTTAGCTCCGTGGGT 59.391 55.000 0.00 0.00 0.00 4.51
2860 3371 0.895530 TCTGTTCTTAGCTCCGTGGG 59.104 55.000 0.00 0.00 0.00 4.61
2861 3372 1.737363 GCTCTGTTCTTAGCTCCGTGG 60.737 57.143 0.00 0.00 35.80 4.94
2862 3373 1.634702 GCTCTGTTCTTAGCTCCGTG 58.365 55.000 0.00 0.00 35.80 4.94
2863 3374 0.171455 CGCTCTGTTCTTAGCTCCGT 59.829 55.000 0.00 0.00 36.56 4.69
2864 3375 0.452184 TCGCTCTGTTCTTAGCTCCG 59.548 55.000 0.00 0.00 36.56 4.63
2866 3377 1.555477 GCTCGCTCTGTTCTTAGCTC 58.445 55.000 0.00 0.00 36.56 4.09
2867 3378 0.174617 GGCTCGCTCTGTTCTTAGCT 59.825 55.000 0.00 0.00 36.56 3.32
2868 3379 0.108615 TGGCTCGCTCTGTTCTTAGC 60.109 55.000 0.00 0.00 35.33 3.09
2869 3380 2.200067 CATGGCTCGCTCTGTTCTTAG 58.800 52.381 0.00 0.00 0.00 2.18
2870 3381 1.134699 CCATGGCTCGCTCTGTTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
2871 3382 0.392193 CCATGGCTCGCTCTGTTCTT 60.392 55.000 0.00 0.00 0.00 2.52
2875 3386 2.898738 CTCCATGGCTCGCTCTGT 59.101 61.111 6.96 0.00 0.00 3.41
2900 3411 3.744719 CGAGGAAGACGGACGGCA 61.745 66.667 0.00 0.00 0.00 5.69
2920 3431 3.462678 GGCCAGGAGGACGAGGAC 61.463 72.222 0.00 0.00 36.89 3.85
2964 3475 1.361271 GTCGTTGTCGTGGAGGACA 59.639 57.895 0.00 0.00 44.74 4.02
2965 3476 1.728426 CGTCGTTGTCGTGGAGGAC 60.728 63.158 0.00 0.00 38.33 3.85
2996 3507 2.183555 CGAACTCCTGGGCGTACC 59.816 66.667 0.00 0.00 40.81 3.34
3183 3706 1.810030 GCCGGAACTCACATCGTCC 60.810 63.158 5.05 0.00 0.00 4.79
3188 3711 1.003355 CTGGTGCCGGAACTCACAT 60.003 57.895 13.69 0.00 35.04 3.21
3189 3712 2.425592 CTGGTGCCGGAACTCACA 59.574 61.111 13.69 0.55 35.04 3.58
3191 3714 3.535629 CTGCTGGTGCCGGAACTCA 62.536 63.158 13.69 8.06 38.71 3.41
3192 3715 2.743928 CTGCTGGTGCCGGAACTC 60.744 66.667 13.69 3.06 38.71 3.01
3195 3718 4.349503 ATGCTGCTGGTGCCGGAA 62.350 61.111 5.05 0.00 38.71 4.30
3198 3721 3.047718 CTTCATGCTGCTGGTGCCG 62.048 63.158 0.00 0.00 38.71 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.