Multiple sequence alignment - TraesCS5A01G417900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G417900 chr5A 100.000 4188 0 0 1 4188 606152437 606156624 0.000000e+00 7734.0
1 TraesCS5A01G417900 chr5A 81.474 1506 195 54 971 2427 606053295 606054765 0.000000e+00 1158.0
2 TraesCS5A01G417900 chr5A 83.671 790 83 22 2564 3320 606054863 606055639 0.000000e+00 702.0
3 TraesCS5A01G417900 chr5A 78.596 584 83 19 3402 3976 606056444 606056994 8.620000e-92 348.0
4 TraesCS5A01G417900 chr5A 95.385 195 8 1 1 195 505445366 505445173 4.070000e-80 309.0
5 TraesCS5A01G417900 chr5A 90.345 145 9 5 598 741 606063159 606063299 7.150000e-43 185.0
6 TraesCS5A01G417900 chr5B 91.938 3659 160 53 598 4188 595652275 595655866 0.000000e+00 4998.0
7 TraesCS5A01G417900 chr5B 82.786 761 78 35 2594 3318 595626963 595627706 7.640000e-177 630.0
8 TraesCS5A01G417900 chr5B 79.135 786 110 31 1639 2408 595625144 595625891 1.050000e-135 494.0
9 TraesCS5A01G417900 chr5B 85.339 457 47 9 971 1413 595624697 595625147 4.940000e-124 455.0
10 TraesCS5A01G417900 chr5B 95.855 193 7 1 1 192 33175610 33175418 1.130000e-80 311.0
11 TraesCS5A01G417900 chr5D 92.544 2897 121 35 1346 4186 484567979 484570836 0.000000e+00 4065.0
12 TraesCS5A01G417900 chr5D 83.066 1494 191 43 971 2426 484415714 484417183 0.000000e+00 1301.0
13 TraesCS5A01G417900 chr5D 85.139 720 66 17 2602 3291 484417338 484418046 0.000000e+00 699.0
14 TraesCS5A01G417900 chr5D 93.629 361 13 7 943 1303 484567267 484567617 7.970000e-147 531.0
15 TraesCS5A01G417900 chr5D 98.895 181 1 1 1 180 546039436 546039256 5.220000e-84 322.0
16 TraesCS5A01G417900 chr4D 95.074 203 6 4 1 202 290712655 290712854 2.430000e-82 316.0
17 TraesCS5A01G417900 chr4D 94.924 197 9 1 1 197 117775533 117775728 1.460000e-79 307.0
18 TraesCS5A01G417900 chr2D 96.825 189 6 0 1 189 368092279 368092467 2.430000e-82 316.0
19 TraesCS5A01G417900 chr3A 96.809 188 4 2 1 188 507625325 507625510 3.140000e-81 313.0
20 TraesCS5A01G417900 chr3A 96.809 188 5 1 1 188 642635027 642634841 3.140000e-81 313.0
21 TraesCS5A01G417900 chr7D 95.876 194 5 3 1 192 127015510 127015702 1.130000e-80 311.0
22 TraesCS5A01G417900 chr6A 86.885 183 21 1 1045 1227 30422633 30422812 7.100000e-48 202.0
23 TraesCS5A01G417900 chr6A 83.838 198 29 1 1050 1247 30036448 30036254 7.150000e-43 185.0
24 TraesCS5A01G417900 chr6A 97.674 43 1 0 1431 1473 30283094 30283052 1.610000e-09 75.0
25 TraesCS5A01G417900 chr6B 84.375 192 27 1 1050 1241 51732114 51732302 7.150000e-43 185.0
26 TraesCS5A01G417900 chr6B 86.765 68 9 0 1429 1496 45552224 45552291 4.490000e-10 76.8
27 TraesCS5A01G417900 chr6B 94.872 39 2 0 1429 1467 63365588 63365626 1.260000e-05 62.1
28 TraesCS5A01G417900 chr6D 81.481 216 36 2 1032 1246 29094596 29094384 1.550000e-39 174.0
29 TraesCS5A01G417900 chr6D 82.564 195 31 1 1047 1241 27845350 27845541 7.200000e-38 169.0
30 TraesCS5A01G417900 chr6D 82.178 202 29 5 1050 1249 35886224 35886028 2.590000e-37 167.0
31 TraesCS5A01G417900 chr6D 90.909 44 4 0 1612 1655 29933027 29933070 4.520000e-05 60.2
32 TraesCS5A01G417900 chrUn 92.308 52 4 0 1429 1480 95016681 95016732 1.610000e-09 75.0
33 TraesCS5A01G417900 chrUn 97.561 41 1 0 1429 1469 26697804 26697764 2.090000e-08 71.3
34 TraesCS5A01G417900 chr1D 94.737 38 1 1 667 704 378734605 378734641 1.630000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G417900 chr5A 606152437 606156624 4187 False 7734.000000 7734 100.0000 1 4188 1 chr5A.!!$F2 4187
1 TraesCS5A01G417900 chr5A 606053295 606056994 3699 False 736.000000 1158 81.2470 971 3976 3 chr5A.!!$F3 3005
2 TraesCS5A01G417900 chr5B 595652275 595655866 3591 False 4998.000000 4998 91.9380 598 4188 1 chr5B.!!$F1 3590
3 TraesCS5A01G417900 chr5B 595624697 595627706 3009 False 526.333333 630 82.4200 971 3318 3 chr5B.!!$F2 2347
4 TraesCS5A01G417900 chr5D 484567267 484570836 3569 False 2298.000000 4065 93.0865 943 4186 2 chr5D.!!$F2 3243
5 TraesCS5A01G417900 chr5D 484415714 484418046 2332 False 1000.000000 1301 84.1025 971 3291 2 chr5D.!!$F1 2320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
558 559 0.033601 AGTGGTTGTCCTTTGGTGCA 60.034 50.0 0.00 0.0 34.23 4.57 F
560 561 0.033601 TGGTTGTCCTTTGGTGCACT 60.034 50.0 17.98 0.0 34.23 4.40 F
911 949 0.108138 CCGCCTTGATCGGTTCTTCT 60.108 55.0 0.00 0.0 41.85 2.85 F
1717 2102 0.784250 CGGTTTCGATGCGTGTTTCG 60.784 55.0 0.00 0.0 39.70 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 2792 1.080638 ACCTCTGACCTCTGACCTCT 58.919 55.000 0.00 0.0 0.00 3.69 R
2368 2795 1.107945 GCTACCTCTGACCTCTGACC 58.892 60.000 0.00 0.0 0.00 4.02 R
2722 4224 1.081175 CTCTGACGCTTGCGAGTCA 60.081 57.895 22.03 14.0 45.71 3.41 R
3352 5628 0.109723 TGGCGGCCTACTTTCAAGTT 59.890 50.000 21.46 0.0 40.37 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.410120 TTGATCAATGAGCTAGTCAAGTAGA 57.590 36.000 3.38 0.00 39.19 2.59
26 27 7.036996 TGATCAATGAGCTAGTCAAGTAGAG 57.963 40.000 0.00 0.00 39.19 2.43
27 28 5.843673 TCAATGAGCTAGTCAAGTAGAGG 57.156 43.478 0.00 0.00 39.19 3.69
28 29 4.098654 TCAATGAGCTAGTCAAGTAGAGGC 59.901 45.833 0.00 0.00 39.19 4.70
29 30 3.087370 TGAGCTAGTCAAGTAGAGGCA 57.913 47.619 0.00 0.00 29.64 4.75
30 31 3.636679 TGAGCTAGTCAAGTAGAGGCAT 58.363 45.455 0.00 0.00 29.64 4.40
31 32 4.793201 TGAGCTAGTCAAGTAGAGGCATA 58.207 43.478 0.00 0.00 29.64 3.14
32 33 4.580995 TGAGCTAGTCAAGTAGAGGCATAC 59.419 45.833 0.00 0.00 29.64 2.39
33 34 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
34 35 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
35 36 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
36 37 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
37 38 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
38 39 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
39 40 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
40 41 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
41 42 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
42 43 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
43 44 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
44 45 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
45 46 3.951037 AGAGGCATACTAGTGACACTCTG 59.049 47.826 12.39 9.04 33.23 3.35
46 47 3.697045 GAGGCATACTAGTGACACTCTGT 59.303 47.826 12.39 14.35 0.00 3.41
47 48 4.090090 AGGCATACTAGTGACACTCTGTT 58.910 43.478 12.39 0.00 0.00 3.16
48 49 4.528596 AGGCATACTAGTGACACTCTGTTT 59.471 41.667 12.39 5.23 0.00 2.83
49 50 4.627467 GGCATACTAGTGACACTCTGTTTG 59.373 45.833 12.39 16.63 0.00 2.93
50 51 5.230942 GCATACTAGTGACACTCTGTTTGT 58.769 41.667 12.39 5.61 0.00 2.83
51 52 5.346281 GCATACTAGTGACACTCTGTTTGTC 59.654 44.000 12.39 9.81 43.22 3.18
52 53 6.682746 CATACTAGTGACACTCTGTTTGTCT 58.317 40.000 12.39 0.00 43.30 3.41
53 54 7.575155 GCATACTAGTGACACTCTGTTTGTCTA 60.575 40.741 12.39 0.00 43.30 2.59
54 55 6.902771 ACTAGTGACACTCTGTTTGTCTAT 57.097 37.500 12.39 0.00 43.30 1.98
55 56 6.682746 ACTAGTGACACTCTGTTTGTCTATG 58.317 40.000 12.39 0.00 43.30 2.23
56 57 5.537300 AGTGACACTCTGTTTGTCTATGT 57.463 39.130 1.07 0.00 43.30 2.29
57 58 6.650427 AGTGACACTCTGTTTGTCTATGTA 57.350 37.500 1.07 0.00 43.30 2.29
58 59 7.233389 AGTGACACTCTGTTTGTCTATGTAT 57.767 36.000 1.07 0.00 43.30 2.29
59 60 7.671302 AGTGACACTCTGTTTGTCTATGTATT 58.329 34.615 1.07 0.00 43.30 1.89
60 61 7.815068 AGTGACACTCTGTTTGTCTATGTATTC 59.185 37.037 1.07 0.00 43.30 1.75
61 62 7.598869 GTGACACTCTGTTTGTCTATGTATTCA 59.401 37.037 0.00 0.00 43.30 2.57
62 63 7.598869 TGACACTCTGTTTGTCTATGTATTCAC 59.401 37.037 11.01 0.00 43.30 3.18
63 64 7.441836 ACACTCTGTTTGTCTATGTATTCACA 58.558 34.615 0.00 0.00 39.52 3.58
64 65 7.385205 ACACTCTGTTTGTCTATGTATTCACAC 59.615 37.037 0.00 0.00 37.54 3.82
65 66 7.384932 CACTCTGTTTGTCTATGTATTCACACA 59.615 37.037 0.00 0.00 37.54 3.72
66 67 8.097038 ACTCTGTTTGTCTATGTATTCACACAT 58.903 33.333 0.00 0.00 41.88 3.21
67 68 8.255394 TCTGTTTGTCTATGTATTCACACATG 57.745 34.615 0.00 0.00 39.46 3.21
68 69 7.877612 TCTGTTTGTCTATGTATTCACACATGT 59.122 33.333 0.00 0.00 39.46 3.21
69 70 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
70 71 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
81 82 9.935682 GTATTCACACATGTATTATGTTTCTGG 57.064 33.333 0.00 0.00 0.00 3.86
82 83 7.994425 TTCACACATGTATTATGTTTCTGGT 57.006 32.000 0.00 0.00 0.00 4.00
83 84 7.994425 TCACACATGTATTATGTTTCTGGTT 57.006 32.000 0.00 0.00 0.00 3.67
84 85 9.508642 TTCACACATGTATTATGTTTCTGGTTA 57.491 29.630 0.00 0.00 0.00 2.85
85 86 9.508642 TCACACATGTATTATGTTTCTGGTTAA 57.491 29.630 0.00 0.00 0.00 2.01
98 99 8.856153 TGTTTCTGGTTAATACAATTCTAGCA 57.144 30.769 0.00 0.00 0.00 3.49
99 100 9.461312 TGTTTCTGGTTAATACAATTCTAGCAT 57.539 29.630 0.00 0.00 0.00 3.79
100 101 9.722056 GTTTCTGGTTAATACAATTCTAGCATG 57.278 33.333 0.00 0.00 0.00 4.06
101 102 9.679661 TTTCTGGTTAATACAATTCTAGCATGA 57.320 29.630 0.00 0.00 0.00 3.07
102 103 9.679661 TTCTGGTTAATACAATTCTAGCATGAA 57.320 29.630 0.00 0.00 0.00 2.57
103 104 9.851686 TCTGGTTAATACAATTCTAGCATGAAT 57.148 29.630 0.00 0.00 38.19 2.57
162 163 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
174 175 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
175 176 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
176 177 4.349342 CCTCTAGGGCATATTTCCTTCAGT 59.651 45.833 0.00 0.00 34.75 3.41
177 178 5.163152 CCTCTAGGGCATATTTCCTTCAGTT 60.163 44.000 0.00 0.00 34.75 3.16
178 179 5.684704 TCTAGGGCATATTTCCTTCAGTTG 58.315 41.667 0.00 0.00 34.75 3.16
179 180 4.322057 AGGGCATATTTCCTTCAGTTGT 57.678 40.909 0.00 0.00 0.00 3.32
180 181 4.677182 AGGGCATATTTCCTTCAGTTGTT 58.323 39.130 0.00 0.00 0.00 2.83
181 182 5.086621 AGGGCATATTTCCTTCAGTTGTTT 58.913 37.500 0.00 0.00 0.00 2.83
182 183 6.252995 AGGGCATATTTCCTTCAGTTGTTTA 58.747 36.000 0.00 0.00 0.00 2.01
183 184 6.378280 AGGGCATATTTCCTTCAGTTGTTTAG 59.622 38.462 0.00 0.00 0.00 1.85
184 185 6.405842 GGGCATATTTCCTTCAGTTGTTTAGG 60.406 42.308 0.00 0.00 0.00 2.69
185 186 6.152831 GGCATATTTCCTTCAGTTGTTTAGGT 59.847 38.462 0.00 0.00 0.00 3.08
186 187 7.309805 GGCATATTTCCTTCAGTTGTTTAGGTT 60.310 37.037 0.00 0.00 0.00 3.50
187 188 8.736244 GCATATTTCCTTCAGTTGTTTAGGTTA 58.264 33.333 0.00 0.00 0.00 2.85
190 191 8.762481 ATTTCCTTCAGTTGTTTAGGTTAGTT 57.238 30.769 0.00 0.00 0.00 2.24
191 192 8.584063 TTTCCTTCAGTTGTTTAGGTTAGTTT 57.416 30.769 0.00 0.00 0.00 2.66
192 193 8.584063 TTCCTTCAGTTGTTTAGGTTAGTTTT 57.416 30.769 0.00 0.00 0.00 2.43
193 194 8.584063 TCCTTCAGTTGTTTAGGTTAGTTTTT 57.416 30.769 0.00 0.00 0.00 1.94
210 211 2.413310 TTTTTCCTGATAGGGGCGAC 57.587 50.000 0.00 0.00 35.59 5.19
211 212 1.281419 TTTTCCTGATAGGGGCGACA 58.719 50.000 0.00 0.00 35.59 4.35
212 213 1.507140 TTTCCTGATAGGGGCGACAT 58.493 50.000 0.00 0.00 35.59 3.06
213 214 1.507140 TTCCTGATAGGGGCGACATT 58.493 50.000 0.00 0.00 35.59 2.71
214 215 2.391926 TCCTGATAGGGGCGACATTA 57.608 50.000 0.00 0.00 35.59 1.90
215 216 2.902608 TCCTGATAGGGGCGACATTAT 58.097 47.619 0.00 0.00 35.59 1.28
216 217 2.567169 TCCTGATAGGGGCGACATTATG 59.433 50.000 0.00 0.00 35.59 1.90
217 218 2.303022 CCTGATAGGGGCGACATTATGT 59.697 50.000 0.00 0.00 0.00 2.29
218 219 3.329386 CTGATAGGGGCGACATTATGTG 58.671 50.000 1.24 0.00 0.00 3.21
219 220 2.038426 TGATAGGGGCGACATTATGTGG 59.962 50.000 1.24 2.21 0.00 4.17
220 221 1.502690 TAGGGGCGACATTATGTGGT 58.497 50.000 1.24 0.00 0.00 4.16
221 222 0.107214 AGGGGCGACATTATGTGGTG 60.107 55.000 1.24 0.00 0.00 4.17
222 223 1.101049 GGGGCGACATTATGTGGTGG 61.101 60.000 1.24 0.00 0.00 4.61
223 224 1.724582 GGGCGACATTATGTGGTGGC 61.725 60.000 1.24 4.80 37.92 5.01
224 225 1.029408 GGCGACATTATGTGGTGGCA 61.029 55.000 1.24 0.00 40.03 4.92
225 226 0.808125 GCGACATTATGTGGTGGCAA 59.192 50.000 1.24 0.00 38.43 4.52
226 227 1.405105 GCGACATTATGTGGTGGCAAT 59.595 47.619 1.24 0.00 38.43 3.56
227 228 2.795681 GCGACATTATGTGGTGGCAATG 60.796 50.000 1.24 0.00 38.43 2.82
228 229 2.795681 CGACATTATGTGGTGGCAATGC 60.796 50.000 1.24 0.00 32.76 3.56
229 230 2.428171 GACATTATGTGGTGGCAATGCT 59.572 45.455 1.24 0.00 32.76 3.79
230 231 2.833338 ACATTATGTGGTGGCAATGCTT 59.167 40.909 4.82 0.00 32.76 3.91
231 232 3.119029 ACATTATGTGGTGGCAATGCTTC 60.119 43.478 4.82 0.00 32.76 3.86
232 233 2.212812 TATGTGGTGGCAATGCTTCA 57.787 45.000 4.82 0.00 0.00 3.02
233 234 1.563924 ATGTGGTGGCAATGCTTCAT 58.436 45.000 4.82 0.79 0.00 2.57
234 235 0.889994 TGTGGTGGCAATGCTTCATC 59.110 50.000 4.82 0.00 0.00 2.92
235 236 1.180029 GTGGTGGCAATGCTTCATCT 58.820 50.000 4.82 0.00 0.00 2.90
236 237 1.547372 GTGGTGGCAATGCTTCATCTT 59.453 47.619 4.82 0.00 0.00 2.40
237 238 1.820519 TGGTGGCAATGCTTCATCTTC 59.179 47.619 4.82 0.00 0.00 2.87
238 239 1.202222 GGTGGCAATGCTTCATCTTCG 60.202 52.381 4.82 0.00 0.00 3.79
239 240 1.739466 GTGGCAATGCTTCATCTTCGA 59.261 47.619 4.82 0.00 0.00 3.71
240 241 2.011947 TGGCAATGCTTCATCTTCGAG 58.988 47.619 4.82 0.00 0.00 4.04
241 242 1.268437 GGCAATGCTTCATCTTCGAGC 60.268 52.381 4.82 0.00 36.95 5.03
242 243 1.268437 GCAATGCTTCATCTTCGAGCC 60.268 52.381 0.00 0.00 35.59 4.70
243 244 1.004185 CAATGCTTCATCTTCGAGCCG 60.004 52.381 0.00 0.00 35.59 5.52
244 245 1.156645 ATGCTTCATCTTCGAGCCGC 61.157 55.000 0.00 0.00 35.59 6.53
245 246 1.520342 GCTTCATCTTCGAGCCGCT 60.520 57.895 0.00 0.00 0.00 5.52
246 247 1.486644 GCTTCATCTTCGAGCCGCTC 61.487 60.000 10.59 10.59 0.00 5.03
247 248 0.102120 CTTCATCTTCGAGCCGCTCT 59.898 55.000 18.14 0.00 0.00 4.09
248 249 0.532573 TTCATCTTCGAGCCGCTCTT 59.467 50.000 18.14 0.00 0.00 2.85
249 250 0.532573 TCATCTTCGAGCCGCTCTTT 59.467 50.000 18.14 0.00 0.00 2.52
250 251 0.926846 CATCTTCGAGCCGCTCTTTC 59.073 55.000 18.14 0.00 0.00 2.62
251 252 0.526524 ATCTTCGAGCCGCTCTTTCG 60.527 55.000 18.14 6.13 35.76 3.46
252 253 1.444553 CTTCGAGCCGCTCTTTCGT 60.445 57.895 18.14 0.00 35.90 3.85
253 254 1.678269 CTTCGAGCCGCTCTTTCGTG 61.678 60.000 18.14 1.79 35.90 4.35
254 255 3.843240 CGAGCCGCTCTTTCGTGC 61.843 66.667 18.14 0.00 0.00 5.34
255 256 2.433318 GAGCCGCTCTTTCGTGCT 60.433 61.111 13.42 0.00 38.19 4.40
256 257 2.029844 GAGCCGCTCTTTCGTGCTT 61.030 57.895 13.42 0.00 36.59 3.91
257 258 1.569479 GAGCCGCTCTTTCGTGCTTT 61.569 55.000 13.42 0.00 36.59 3.51
258 259 1.441016 GCCGCTCTTTCGTGCTTTG 60.441 57.895 0.00 0.00 0.00 2.77
259 260 1.841663 GCCGCTCTTTCGTGCTTTGA 61.842 55.000 0.00 0.00 0.00 2.69
260 261 0.798776 CCGCTCTTTCGTGCTTTGAT 59.201 50.000 0.00 0.00 0.00 2.57
261 262 1.201965 CCGCTCTTTCGTGCTTTGATC 60.202 52.381 0.00 0.00 0.00 2.92
262 263 1.201965 CGCTCTTTCGTGCTTTGATCC 60.202 52.381 0.00 0.00 0.00 3.36
263 264 2.079925 GCTCTTTCGTGCTTTGATCCT 58.920 47.619 0.00 0.00 0.00 3.24
264 265 2.095053 GCTCTTTCGTGCTTTGATCCTC 59.905 50.000 0.00 0.00 0.00 3.71
265 266 2.675348 CTCTTTCGTGCTTTGATCCTCC 59.325 50.000 0.00 0.00 0.00 4.30
266 267 2.303022 TCTTTCGTGCTTTGATCCTCCT 59.697 45.455 0.00 0.00 0.00 3.69
267 268 2.859165 TTCGTGCTTTGATCCTCCTT 57.141 45.000 0.00 0.00 0.00 3.36
268 269 2.099141 TCGTGCTTTGATCCTCCTTG 57.901 50.000 0.00 0.00 0.00 3.61
269 270 1.347707 TCGTGCTTTGATCCTCCTTGT 59.652 47.619 0.00 0.00 0.00 3.16
270 271 1.466167 CGTGCTTTGATCCTCCTTGTG 59.534 52.381 0.00 0.00 0.00 3.33
271 272 2.508526 GTGCTTTGATCCTCCTTGTGT 58.491 47.619 0.00 0.00 0.00 3.72
272 273 2.887152 GTGCTTTGATCCTCCTTGTGTT 59.113 45.455 0.00 0.00 0.00 3.32
273 274 3.057946 GTGCTTTGATCCTCCTTGTGTTC 60.058 47.826 0.00 0.00 0.00 3.18
274 275 2.160417 GCTTTGATCCTCCTTGTGTTCG 59.840 50.000 0.00 0.00 0.00 3.95
275 276 3.403038 CTTTGATCCTCCTTGTGTTCGT 58.597 45.455 0.00 0.00 0.00 3.85
276 277 2.743636 TGATCCTCCTTGTGTTCGTC 57.256 50.000 0.00 0.00 0.00 4.20
277 278 1.275291 TGATCCTCCTTGTGTTCGTCC 59.725 52.381 0.00 0.00 0.00 4.79
278 279 1.275291 GATCCTCCTTGTGTTCGTCCA 59.725 52.381 0.00 0.00 0.00 4.02
279 280 1.348064 TCCTCCTTGTGTTCGTCCAT 58.652 50.000 0.00 0.00 0.00 3.41
280 281 1.697432 TCCTCCTTGTGTTCGTCCATT 59.303 47.619 0.00 0.00 0.00 3.16
281 282 2.901192 TCCTCCTTGTGTTCGTCCATTA 59.099 45.455 0.00 0.00 0.00 1.90
282 283 3.056107 TCCTCCTTGTGTTCGTCCATTAG 60.056 47.826 0.00 0.00 0.00 1.73
283 284 3.262420 CTCCTTGTGTTCGTCCATTAGG 58.738 50.000 0.00 0.00 0.00 2.69
284 285 2.901192 TCCTTGTGTTCGTCCATTAGGA 59.099 45.455 0.00 0.00 43.21 2.94
295 296 3.459232 TCCATTAGGACGAGAGCATTG 57.541 47.619 0.00 0.00 39.61 2.82
296 297 2.103094 TCCATTAGGACGAGAGCATTGG 59.897 50.000 0.00 0.00 39.61 3.16
297 298 1.869767 CATTAGGACGAGAGCATTGGC 59.130 52.381 0.00 0.00 41.61 4.52
311 312 3.064931 GCATTGGCGTAGATTAGTACCC 58.935 50.000 0.00 0.00 0.00 3.69
312 313 3.244112 GCATTGGCGTAGATTAGTACCCT 60.244 47.826 0.00 0.00 0.00 4.34
313 314 4.742743 GCATTGGCGTAGATTAGTACCCTT 60.743 45.833 0.00 0.00 0.00 3.95
314 315 5.365619 CATTGGCGTAGATTAGTACCCTTT 58.634 41.667 0.00 0.00 0.00 3.11
315 316 5.425196 TTGGCGTAGATTAGTACCCTTTT 57.575 39.130 0.00 0.00 0.00 2.27
316 317 5.425196 TGGCGTAGATTAGTACCCTTTTT 57.575 39.130 0.00 0.00 0.00 1.94
336 337 4.904253 TTTTTGAACGGTGAGGTTAAGG 57.096 40.909 0.00 0.00 0.00 2.69
337 338 3.564053 TTTGAACGGTGAGGTTAAGGT 57.436 42.857 0.00 0.00 0.00 3.50
338 339 3.564053 TTGAACGGTGAGGTTAAGGTT 57.436 42.857 0.00 0.00 0.00 3.50
339 340 3.564053 TGAACGGTGAGGTTAAGGTTT 57.436 42.857 0.00 0.00 0.00 3.27
340 341 3.469739 TGAACGGTGAGGTTAAGGTTTC 58.530 45.455 0.00 0.00 0.00 2.78
341 342 3.135167 TGAACGGTGAGGTTAAGGTTTCT 59.865 43.478 0.00 0.00 0.00 2.52
342 343 3.851458 ACGGTGAGGTTAAGGTTTCTT 57.149 42.857 0.00 0.00 37.03 2.52
343 344 3.473625 ACGGTGAGGTTAAGGTTTCTTG 58.526 45.455 0.00 0.00 34.59 3.02
344 345 2.225727 CGGTGAGGTTAAGGTTTCTTGC 59.774 50.000 0.00 0.00 34.59 4.01
345 346 2.557056 GGTGAGGTTAAGGTTTCTTGCC 59.443 50.000 0.00 0.00 34.59 4.52
346 347 3.219281 GTGAGGTTAAGGTTTCTTGCCA 58.781 45.455 0.00 0.00 34.23 4.92
347 348 3.634910 GTGAGGTTAAGGTTTCTTGCCAA 59.365 43.478 0.00 0.00 34.23 4.52
348 349 4.280929 GTGAGGTTAAGGTTTCTTGCCAAT 59.719 41.667 0.00 0.00 34.23 3.16
349 350 4.280677 TGAGGTTAAGGTTTCTTGCCAATG 59.719 41.667 0.00 0.00 34.23 2.82
350 351 4.223144 AGGTTAAGGTTTCTTGCCAATGT 58.777 39.130 0.00 0.00 34.23 2.71
351 352 4.039124 AGGTTAAGGTTTCTTGCCAATGTG 59.961 41.667 0.00 0.00 34.23 3.21
352 353 2.531522 AAGGTTTCTTGCCAATGTGC 57.468 45.000 0.00 0.00 0.00 4.57
353 354 1.412079 AGGTTTCTTGCCAATGTGCA 58.588 45.000 0.00 0.00 40.07 4.57
354 355 1.069049 AGGTTTCTTGCCAATGTGCAC 59.931 47.619 10.75 10.75 41.88 4.57
355 356 1.130955 GTTTCTTGCCAATGTGCACG 58.869 50.000 13.13 0.00 41.88 5.34
356 357 1.028130 TTTCTTGCCAATGTGCACGA 58.972 45.000 13.13 1.58 41.88 4.35
357 358 0.310543 TTCTTGCCAATGTGCACGAC 59.689 50.000 13.13 0.00 41.88 4.34
358 359 1.440850 CTTGCCAATGTGCACGACG 60.441 57.895 13.13 2.10 41.88 5.12
359 360 2.784957 CTTGCCAATGTGCACGACGG 62.785 60.000 13.13 12.79 41.88 4.79
360 361 4.759096 GCCAATGTGCACGACGGC 62.759 66.667 22.46 22.46 0.00 5.68
361 362 4.444024 CCAATGTGCACGACGGCG 62.444 66.667 10.39 10.39 44.79 6.46
362 363 3.410516 CAATGTGCACGACGGCGA 61.411 61.111 22.49 0.00 41.64 5.54
363 364 3.112075 AATGTGCACGACGGCGAG 61.112 61.111 22.49 12.22 41.64 5.03
364 365 3.567478 AATGTGCACGACGGCGAGA 62.567 57.895 22.49 0.00 41.64 4.04
365 366 2.835701 AATGTGCACGACGGCGAGAT 62.836 55.000 22.49 0.00 41.64 2.75
366 367 2.809601 GTGCACGACGGCGAGATT 60.810 61.111 22.49 0.00 41.64 2.40
367 368 2.048597 TGCACGACGGCGAGATTT 60.049 55.556 22.49 0.00 41.64 2.17
368 369 2.379634 TGCACGACGGCGAGATTTG 61.380 57.895 22.49 5.53 41.64 2.32
369 370 3.081133 CACGACGGCGAGATTTGG 58.919 61.111 22.49 0.00 41.64 3.28
370 371 1.736645 CACGACGGCGAGATTTGGT 60.737 57.895 22.49 0.00 41.64 3.67
371 372 1.736645 ACGACGGCGAGATTTGGTG 60.737 57.895 22.49 0.00 41.64 4.17
372 373 2.785258 GACGGCGAGATTTGGTGC 59.215 61.111 16.62 0.00 0.00 5.01
373 374 2.746277 ACGGCGAGATTTGGTGCC 60.746 61.111 16.62 0.00 44.09 5.01
375 376 3.190878 GGCGAGATTTGGTGCCAG 58.809 61.111 0.00 0.00 46.76 4.85
376 377 2.409870 GGCGAGATTTGGTGCCAGG 61.410 63.158 0.00 0.00 46.76 4.45
377 378 3.056313 GCGAGATTTGGTGCCAGGC 62.056 63.158 3.66 3.66 0.00 4.85
378 379 1.675310 CGAGATTTGGTGCCAGGCA 60.675 57.895 11.22 11.22 35.60 4.75
388 389 1.732917 TGCCAGGCACTTCAAAACG 59.267 52.632 11.22 0.00 34.60 3.60
389 390 0.749818 TGCCAGGCACTTCAAAACGA 60.750 50.000 11.22 0.00 34.60 3.85
390 391 0.598065 GCCAGGCACTTCAAAACGAT 59.402 50.000 6.55 0.00 34.60 3.73
391 392 1.000274 GCCAGGCACTTCAAAACGATT 60.000 47.619 6.55 0.00 34.60 3.34
392 393 2.922335 GCCAGGCACTTCAAAACGATTC 60.922 50.000 6.55 0.00 34.60 2.52
393 394 2.293122 CCAGGCACTTCAAAACGATTCA 59.707 45.455 0.00 0.00 34.60 2.57
394 395 3.243367 CCAGGCACTTCAAAACGATTCAA 60.243 43.478 0.00 0.00 34.60 2.69
395 396 4.549458 CAGGCACTTCAAAACGATTCAAT 58.451 39.130 0.00 0.00 34.60 2.57
396 397 4.383649 CAGGCACTTCAAAACGATTCAATG 59.616 41.667 0.00 0.00 34.60 2.82
397 398 3.674753 GGCACTTCAAAACGATTCAATGG 59.325 43.478 0.00 0.00 0.00 3.16
398 399 4.298332 GCACTTCAAAACGATTCAATGGT 58.702 39.130 0.00 0.00 0.00 3.55
399 400 4.744631 GCACTTCAAAACGATTCAATGGTT 59.255 37.500 0.00 0.00 32.34 3.67
400 401 5.107875 GCACTTCAAAACGATTCAATGGTTC 60.108 40.000 0.00 0.00 30.59 3.62
401 402 5.976534 CACTTCAAAACGATTCAATGGTTCA 59.023 36.000 0.00 0.00 30.59 3.18
402 403 6.475076 CACTTCAAAACGATTCAATGGTTCAA 59.525 34.615 0.00 0.00 30.59 2.69
403 404 7.169645 CACTTCAAAACGATTCAATGGTTCAAT 59.830 33.333 0.00 0.00 30.59 2.57
404 405 7.169645 ACTTCAAAACGATTCAATGGTTCAATG 59.830 33.333 0.00 0.00 30.59 2.82
405 406 5.925397 TCAAAACGATTCAATGGTTCAATGG 59.075 36.000 0.00 0.00 30.59 3.16
406 407 3.508744 ACGATTCAATGGTTCAATGGC 57.491 42.857 0.00 0.00 0.00 4.40
407 408 2.824936 ACGATTCAATGGTTCAATGGCA 59.175 40.909 0.00 0.00 0.00 4.92
408 409 3.257873 ACGATTCAATGGTTCAATGGCAA 59.742 39.130 0.00 0.00 0.00 4.52
409 410 4.081531 ACGATTCAATGGTTCAATGGCAAT 60.082 37.500 0.00 0.00 0.00 3.56
410 411 5.126869 ACGATTCAATGGTTCAATGGCAATA 59.873 36.000 0.00 0.00 0.00 1.90
411 412 6.041511 CGATTCAATGGTTCAATGGCAATAA 58.958 36.000 0.00 0.00 0.00 1.40
412 413 6.702723 CGATTCAATGGTTCAATGGCAATAAT 59.297 34.615 0.00 0.00 0.00 1.28
413 414 7.225145 CGATTCAATGGTTCAATGGCAATAATT 59.775 33.333 0.00 0.00 0.00 1.40
414 415 7.612668 TTCAATGGTTCAATGGCAATAATTG 57.387 32.000 0.00 0.00 36.54 2.32
424 425 3.557207 CAATAATTGCGGCTCTGGC 57.443 52.632 0.00 0.00 37.82 4.85
425 426 1.027357 CAATAATTGCGGCTCTGGCT 58.973 50.000 0.00 0.00 38.73 4.75
426 427 1.406539 CAATAATTGCGGCTCTGGCTT 59.593 47.619 0.00 0.00 38.73 4.35
427 428 1.027357 ATAATTGCGGCTCTGGCTTG 58.973 50.000 0.00 0.00 38.73 4.01
428 429 1.656818 TAATTGCGGCTCTGGCTTGC 61.657 55.000 0.00 0.00 39.14 4.01
429 430 3.933048 ATTGCGGCTCTGGCTTGCT 62.933 57.895 0.00 0.00 39.32 3.91
432 433 2.124819 CGGCTCTGGCTTGCTGAT 60.125 61.111 0.00 0.00 37.75 2.90
433 434 1.748122 CGGCTCTGGCTTGCTGATT 60.748 57.895 0.00 0.00 37.75 2.57
434 435 1.310933 CGGCTCTGGCTTGCTGATTT 61.311 55.000 0.00 0.00 37.75 2.17
435 436 0.893447 GGCTCTGGCTTGCTGATTTT 59.107 50.000 0.00 0.00 38.73 1.82
436 437 1.274447 GGCTCTGGCTTGCTGATTTTT 59.726 47.619 0.00 0.00 38.73 1.94
437 438 2.493278 GGCTCTGGCTTGCTGATTTTTA 59.507 45.455 0.00 0.00 38.73 1.52
438 439 3.428589 GGCTCTGGCTTGCTGATTTTTAG 60.429 47.826 0.00 0.00 38.73 1.85
439 440 3.192212 GCTCTGGCTTGCTGATTTTTAGT 59.808 43.478 0.00 0.00 35.22 2.24
440 441 4.730657 CTCTGGCTTGCTGATTTTTAGTG 58.269 43.478 0.00 0.00 0.00 2.74
441 442 3.507233 TCTGGCTTGCTGATTTTTAGTGG 59.493 43.478 0.00 0.00 0.00 4.00
442 443 2.029110 TGGCTTGCTGATTTTTAGTGGC 60.029 45.455 0.00 0.00 0.00 5.01
443 444 2.029110 GGCTTGCTGATTTTTAGTGGCA 60.029 45.455 0.00 0.00 0.00 4.92
444 445 2.989166 GCTTGCTGATTTTTAGTGGCAC 59.011 45.455 10.29 10.29 0.00 5.01
445 446 2.987413 TGCTGATTTTTAGTGGCACG 57.013 45.000 12.71 0.00 0.00 5.34
446 447 2.226330 TGCTGATTTTTAGTGGCACGT 58.774 42.857 12.71 3.39 0.00 4.49
447 448 2.031245 TGCTGATTTTTAGTGGCACGTG 60.031 45.455 12.28 12.28 0.00 4.49
448 449 2.584791 CTGATTTTTAGTGGCACGTGC 58.415 47.619 32.15 32.15 41.14 5.34
449 450 1.069568 TGATTTTTAGTGGCACGTGCG 60.070 47.619 32.35 0.65 43.26 5.34
450 451 0.948678 ATTTTTAGTGGCACGTGCGT 59.051 45.000 32.35 21.81 43.26 5.24
460 461 3.319904 ACGTGCGTGAAGTCTTGC 58.680 55.556 0.00 0.00 0.00 4.01
461 462 2.244651 ACGTGCGTGAAGTCTTGCC 61.245 57.895 0.00 0.00 0.00 4.52
462 463 2.551270 GTGCGTGAAGTCTTGCCG 59.449 61.111 0.00 0.00 0.00 5.69
463 464 2.664851 TGCGTGAAGTCTTGCCGG 60.665 61.111 0.00 0.00 0.00 6.13
464 465 2.665185 GCGTGAAGTCTTGCCGGT 60.665 61.111 1.90 0.00 0.00 5.28
465 466 2.251642 GCGTGAAGTCTTGCCGGTT 61.252 57.895 1.90 0.00 0.00 4.44
466 467 1.860078 CGTGAAGTCTTGCCGGTTC 59.140 57.895 1.90 0.00 0.00 3.62
467 468 0.600255 CGTGAAGTCTTGCCGGTTCT 60.600 55.000 1.90 0.00 0.00 3.01
468 469 1.149148 GTGAAGTCTTGCCGGTTCTC 58.851 55.000 1.90 0.00 0.00 2.87
469 470 0.756294 TGAAGTCTTGCCGGTTCTCA 59.244 50.000 1.90 0.00 0.00 3.27
470 471 1.347707 TGAAGTCTTGCCGGTTCTCAT 59.652 47.619 1.90 0.00 0.00 2.90
471 472 2.565391 TGAAGTCTTGCCGGTTCTCATA 59.435 45.455 1.90 0.00 0.00 2.15
472 473 2.969628 AGTCTTGCCGGTTCTCATAG 57.030 50.000 1.90 0.00 0.00 2.23
473 474 2.457598 AGTCTTGCCGGTTCTCATAGA 58.542 47.619 1.90 0.00 0.00 1.98
474 475 2.166664 AGTCTTGCCGGTTCTCATAGAC 59.833 50.000 1.90 8.31 0.00 2.59
475 476 2.094182 GTCTTGCCGGTTCTCATAGACA 60.094 50.000 1.90 0.00 32.79 3.41
476 477 2.565391 TCTTGCCGGTTCTCATAGACAA 59.435 45.455 1.90 0.00 0.00 3.18
477 478 2.672961 TGCCGGTTCTCATAGACAAG 57.327 50.000 1.90 0.00 0.00 3.16
478 479 2.176045 TGCCGGTTCTCATAGACAAGA 58.824 47.619 1.90 0.00 0.00 3.02
479 480 2.766263 TGCCGGTTCTCATAGACAAGAT 59.234 45.455 1.90 0.00 0.00 2.40
480 481 3.181475 TGCCGGTTCTCATAGACAAGATC 60.181 47.826 1.90 0.00 0.00 2.75
481 482 3.181475 GCCGGTTCTCATAGACAAGATCA 60.181 47.826 1.90 0.00 0.00 2.92
482 483 4.680708 GCCGGTTCTCATAGACAAGATCAA 60.681 45.833 1.90 0.00 0.00 2.57
483 484 5.605534 CCGGTTCTCATAGACAAGATCAAT 58.394 41.667 0.00 0.00 0.00 2.57
484 485 5.694006 CCGGTTCTCATAGACAAGATCAATC 59.306 44.000 0.00 0.00 0.00 2.67
485 486 5.694006 CGGTTCTCATAGACAAGATCAATCC 59.306 44.000 0.00 0.00 0.00 3.01
486 487 5.694006 GGTTCTCATAGACAAGATCAATCCG 59.306 44.000 0.00 0.00 0.00 4.18
487 488 6.461648 GGTTCTCATAGACAAGATCAATCCGA 60.462 42.308 0.00 0.00 0.00 4.55
488 489 6.078202 TCTCATAGACAAGATCAATCCGAC 57.922 41.667 0.00 0.00 0.00 4.79
489 490 5.830457 TCTCATAGACAAGATCAATCCGACT 59.170 40.000 0.00 0.00 0.00 4.18
490 491 6.016693 TCTCATAGACAAGATCAATCCGACTC 60.017 42.308 0.00 0.00 0.00 3.36
491 492 3.810310 AGACAAGATCAATCCGACTCC 57.190 47.619 0.00 0.00 0.00 3.85
492 493 2.099921 AGACAAGATCAATCCGACTCCG 59.900 50.000 0.00 0.00 0.00 4.63
521 522 3.986006 ACGACATCGGCACACGGT 61.986 61.111 6.21 0.00 44.95 4.83
530 531 2.870372 GCACACGGTGGCTCATTC 59.130 61.111 13.48 0.00 33.64 2.67
531 532 3.027170 GCACACGGTGGCTCATTCG 62.027 63.158 13.48 0.00 33.64 3.34
532 533 2.742372 ACACGGTGGCTCATTCGC 60.742 61.111 13.48 0.00 0.00 4.70
533 534 3.853330 CACGGTGGCTCATTCGCG 61.853 66.667 0.00 0.00 0.00 5.87
534 535 4.063967 ACGGTGGCTCATTCGCGA 62.064 61.111 3.71 3.71 0.00 5.87
535 536 3.554692 CGGTGGCTCATTCGCGAC 61.555 66.667 9.15 0.00 37.82 5.19
536 537 3.554692 GGTGGCTCATTCGCGACG 61.555 66.667 9.15 2.63 39.19 5.12
537 538 2.506217 GTGGCTCATTCGCGACGA 60.506 61.111 9.15 7.91 0.00 4.20
538 539 1.878522 GTGGCTCATTCGCGACGAT 60.879 57.895 9.15 0.00 35.23 3.73
539 540 0.594028 GTGGCTCATTCGCGACGATA 60.594 55.000 9.15 0.00 35.23 2.92
540 541 0.317854 TGGCTCATTCGCGACGATAG 60.318 55.000 9.15 5.38 35.23 2.08
555 556 3.053831 CGATAGTGGTTGTCCTTTGGT 57.946 47.619 0.00 0.00 34.23 3.67
556 557 2.742053 CGATAGTGGTTGTCCTTTGGTG 59.258 50.000 0.00 0.00 34.23 4.17
557 558 1.975660 TAGTGGTTGTCCTTTGGTGC 58.024 50.000 0.00 0.00 34.23 5.01
558 559 0.033601 AGTGGTTGTCCTTTGGTGCA 60.034 50.000 0.00 0.00 34.23 4.57
559 560 0.102300 GTGGTTGTCCTTTGGTGCAC 59.898 55.000 8.80 8.80 34.23 4.57
560 561 0.033601 TGGTTGTCCTTTGGTGCACT 60.034 50.000 17.98 0.00 34.23 4.40
561 562 0.385390 GGTTGTCCTTTGGTGCACTG 59.615 55.000 17.98 4.86 0.00 3.66
562 563 1.102978 GTTGTCCTTTGGTGCACTGT 58.897 50.000 17.98 0.00 0.00 3.55
563 564 2.294074 GTTGTCCTTTGGTGCACTGTA 58.706 47.619 17.98 0.49 0.00 2.74
564 565 1.961793 TGTCCTTTGGTGCACTGTAC 58.038 50.000 17.98 7.47 0.00 2.90
565 566 1.210722 TGTCCTTTGGTGCACTGTACA 59.789 47.619 17.98 9.88 0.00 2.90
566 567 2.158682 TGTCCTTTGGTGCACTGTACAT 60.159 45.455 17.98 0.00 0.00 2.29
567 568 2.226437 GTCCTTTGGTGCACTGTACATG 59.774 50.000 17.98 0.00 0.00 3.21
568 569 2.105649 TCCTTTGGTGCACTGTACATGA 59.894 45.455 17.98 2.57 0.00 3.07
569 570 3.084039 CCTTTGGTGCACTGTACATGAT 58.916 45.455 17.98 0.00 0.00 2.45
570 571 3.119743 CCTTTGGTGCACTGTACATGATG 60.120 47.826 17.98 0.00 0.00 3.07
571 572 2.857186 TGGTGCACTGTACATGATGT 57.143 45.000 17.98 2.65 0.00 3.06
572 573 3.971245 TGGTGCACTGTACATGATGTA 57.029 42.857 17.98 0.23 0.00 2.29
573 574 4.486125 TGGTGCACTGTACATGATGTAT 57.514 40.909 17.98 0.00 35.05 2.29
574 575 5.606348 TGGTGCACTGTACATGATGTATA 57.394 39.130 17.98 5.20 35.05 1.47
575 576 6.173427 TGGTGCACTGTACATGATGTATAT 57.827 37.500 17.98 0.00 35.05 0.86
576 577 6.591001 TGGTGCACTGTACATGATGTATATT 58.409 36.000 17.98 0.00 35.05 1.28
577 578 7.053498 TGGTGCACTGTACATGATGTATATTT 58.947 34.615 17.98 0.00 35.05 1.40
578 579 7.555914 TGGTGCACTGTACATGATGTATATTTT 59.444 33.333 17.98 0.00 35.05 1.82
579 580 8.405531 GGTGCACTGTACATGATGTATATTTTT 58.594 33.333 17.98 0.00 35.05 1.94
719 721 9.474920 GTACCTTGAAATGTTTGATTTGATTGA 57.525 29.630 0.00 0.00 0.00 2.57
860 883 2.150397 ACAGCACCGTGTCTTTACTC 57.850 50.000 0.00 0.00 0.00 2.59
863 886 1.941476 GCACCGTGTCTTTACTCGCG 61.941 60.000 0.00 0.00 40.38 5.87
895 933 2.171725 CAGTTAAGCCTACGCCCGC 61.172 63.158 0.00 0.00 34.57 6.13
910 948 1.090052 CCCGCCTTGATCGGTTCTTC 61.090 60.000 0.66 0.00 45.09 2.87
911 949 0.108138 CCGCCTTGATCGGTTCTTCT 60.108 55.000 0.00 0.00 41.85 2.85
913 951 2.194271 CGCCTTGATCGGTTCTTCTAC 58.806 52.381 0.00 0.00 0.00 2.59
924 962 3.183775 CGGTTCTTCTACAACGAAACCTG 59.816 47.826 0.00 0.00 0.00 4.00
925 963 3.497262 GGTTCTTCTACAACGAAACCTGG 59.503 47.826 0.00 0.00 0.00 4.45
929 967 1.001633 TCTACAACGAAACCTGGGCTC 59.998 52.381 0.00 0.00 0.00 4.70
934 972 1.995376 ACGAAACCTGGGCTCAAAAT 58.005 45.000 0.00 0.00 0.00 1.82
935 973 3.149005 ACGAAACCTGGGCTCAAAATA 57.851 42.857 0.00 0.00 0.00 1.40
937 975 3.892588 ACGAAACCTGGGCTCAAAATAAA 59.107 39.130 0.00 0.00 0.00 1.40
940 978 5.931724 CGAAACCTGGGCTCAAAATAAAAAT 59.068 36.000 0.00 0.00 0.00 1.82
941 979 6.128580 CGAAACCTGGGCTCAAAATAAAAATG 60.129 38.462 0.00 0.00 0.00 2.32
946 984 7.777440 ACCTGGGCTCAAAATAAAAATGAAAAA 59.223 29.630 0.00 0.00 0.00 1.94
947 985 8.795513 CCTGGGCTCAAAATAAAAATGAAAAAT 58.204 29.630 0.00 0.00 0.00 1.82
973 1018 2.222445 GCTAAAAACAAAGCTCGGTCGA 59.778 45.455 0.00 0.00 35.80 4.20
1176 1227 2.125229 CTCCTCGTCTCCGACCGA 60.125 66.667 0.00 0.00 38.40 4.69
1272 1338 4.779733 GAGCCCTCCCCGGACTCA 62.780 72.222 0.73 0.00 33.16 3.41
1297 1363 1.078848 CAGCCTCTTCTTCACCCCG 60.079 63.158 0.00 0.00 0.00 5.73
1448 1833 4.194497 TCCTGGTGTGGGACCCCA 62.194 66.667 8.45 3.10 45.45 4.96
1485 1870 4.493747 CTTCGTCGTCCCTCCGGC 62.494 72.222 0.00 0.00 0.00 6.13
1573 1958 2.124320 CGCCCATTCCGGTTCCAT 60.124 61.111 0.00 0.00 0.00 3.41
1585 1970 1.586154 GGTTCCATGTGGTCTTGGCG 61.586 60.000 0.00 0.00 38.34 5.69
1717 2102 0.784250 CGGTTTCGATGCGTGTTTCG 60.784 55.000 0.00 0.00 39.70 3.46
1816 2210 1.553690 AACGCCTGGCTGTGATACCT 61.554 55.000 17.92 0.00 0.00 3.08
2122 2522 3.003689 AGTCATTGAAGTTCAACAAGCCG 59.996 43.478 20.26 5.72 39.45 5.52
2186 2587 8.941977 CAAGTGTTTATACTGCAGGTAATAACA 58.058 33.333 19.93 16.96 36.42 2.41
2188 2589 9.509956 AGTGTTTATACTGCAGGTAATAACAAA 57.490 29.630 19.93 3.91 38.37 2.83
2189 2590 9.769093 GTGTTTATACTGCAGGTAATAACAAAG 57.231 33.333 19.93 0.00 38.37 2.77
2190 2591 9.509956 TGTTTATACTGCAGGTAATAACAAAGT 57.490 29.630 19.93 0.00 36.14 2.66
2193 2594 9.826574 TTATACTGCAGGTAATAACAAAGTAGG 57.173 33.333 19.93 0.00 33.74 3.18
2240 2649 3.320626 GAAAGCTTTTCACATCCTTGGC 58.679 45.455 14.05 0.00 0.00 4.52
2259 2670 9.918630 TCCTTGGCGTTAGACTAATATAATAAC 57.081 33.333 0.00 0.00 0.00 1.89
2493 3938 8.755028 TCACTGCTACCTTTCTATTGTGTTATA 58.245 33.333 0.00 0.00 0.00 0.98
2526 3971 5.981088 ATAATGCCAGTGATTGTGTTTCA 57.019 34.783 0.00 0.00 0.00 2.69
2531 3976 2.375110 CAGTGATTGTGTTTCACGCAC 58.625 47.619 10.17 10.17 46.39 5.34
2941 4473 2.435069 TGCATGCCATTCCATTTTAGGG 59.565 45.455 16.68 0.00 0.00 3.53
3020 4554 7.545265 TGTGCTTTTGTTTATCTATTCCAATGC 59.455 33.333 0.00 0.00 0.00 3.56
3398 5695 1.425066 TGCCTCCACTTTGATCTTGGT 59.575 47.619 0.00 0.00 0.00 3.67
3422 5731 3.093278 CGCCTTAGAAAGCGCTGG 58.907 61.111 12.58 7.96 46.50 4.85
3428 5737 0.669318 TTAGAAAGCGCTGGTCCACG 60.669 55.000 12.58 8.85 0.00 4.94
3492 5801 0.107703 TAGCCACCACTGCTGCATAC 60.108 55.000 1.31 0.00 39.91 2.39
3498 5813 1.280133 ACCACTGCTGCATACTGTCAT 59.720 47.619 1.31 0.00 0.00 3.06
3499 5814 1.669265 CCACTGCTGCATACTGTCATG 59.331 52.381 1.31 0.00 0.00 3.07
3500 5815 2.624636 CACTGCTGCATACTGTCATGA 58.375 47.619 1.31 0.00 0.00 3.07
3501 5816 2.608090 CACTGCTGCATACTGTCATGAG 59.392 50.000 1.31 0.00 0.00 2.90
3502 5817 2.498885 ACTGCTGCATACTGTCATGAGA 59.501 45.455 1.31 0.00 0.00 3.27
3503 5818 3.055602 ACTGCTGCATACTGTCATGAGAA 60.056 43.478 1.31 0.00 0.00 2.87
3504 5819 4.127907 CTGCTGCATACTGTCATGAGAAT 58.872 43.478 1.31 0.00 0.00 2.40
3619 5934 1.079612 TCCTGATGCTGCGACAGTG 60.080 57.895 18.99 12.94 33.43 3.66
3813 6130 0.178953 AGCAGTGTCCATTTTGGCCT 60.179 50.000 3.32 0.00 37.47 5.19
3872 6195 2.224161 GCTAGAGGCTTCTACCACATGG 60.224 54.545 0.59 0.00 38.49 3.66
3983 6329 3.988379 TCAACACCATGAAGCAAAGAC 57.012 42.857 0.00 0.00 0.00 3.01
4065 6411 4.819630 GGTTTGACATAAGTTCCACAGTGA 59.180 41.667 0.62 0.00 0.00 3.41
4066 6412 5.049405 GGTTTGACATAAGTTCCACAGTGAG 60.049 44.000 0.62 0.00 0.00 3.51
4158 6505 5.533482 TCATCAACCGGTGGTAAAATTTTG 58.467 37.500 8.52 0.00 33.12 2.44
4176 6523 6.560253 ATTTTGTATGACCAGTGACTGTTC 57.440 37.500 12.15 7.58 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.840931 TCTACTTGACTAGCTCATTGATCAAA 58.159 34.615 13.09 0.00 0.00 2.69
1 2 7.410120 TCTACTTGACTAGCTCATTGATCAA 57.590 36.000 11.26 11.26 0.00 2.57
2 3 6.040278 CCTCTACTTGACTAGCTCATTGATCA 59.960 42.308 0.00 0.00 0.00 2.92
3 4 6.446318 CCTCTACTTGACTAGCTCATTGATC 58.554 44.000 0.00 0.00 0.00 2.92
5 6 4.098654 GCCTCTACTTGACTAGCTCATTGA 59.901 45.833 0.00 0.00 0.00 2.57
6 7 4.142071 TGCCTCTACTTGACTAGCTCATTG 60.142 45.833 0.00 0.00 0.00 2.82
8 9 3.636679 TGCCTCTACTTGACTAGCTCAT 58.363 45.455 0.00 0.00 0.00 2.90
9 10 3.087370 TGCCTCTACTTGACTAGCTCA 57.913 47.619 0.00 0.00 0.00 4.26
10 11 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
11 12 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
12 13 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
13 14 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
14 15 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
15 16 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
16 17 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
17 18 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
18 19 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
19 20 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
20 21 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
21 22 5.008217 CAGAGTGTCACTAGTATGCCTCTAC 59.992 48.000 5.21 0.00 0.00 2.59
22 23 5.126779 CAGAGTGTCACTAGTATGCCTCTA 58.873 45.833 5.21 0.00 0.00 2.43
23 24 3.951037 CAGAGTGTCACTAGTATGCCTCT 59.049 47.826 5.21 1.89 0.00 3.69
24 25 3.697045 ACAGAGTGTCACTAGTATGCCTC 59.303 47.826 5.21 0.00 0.00 4.70
25 26 3.702792 ACAGAGTGTCACTAGTATGCCT 58.297 45.455 5.21 0.00 0.00 4.75
26 27 4.457834 AACAGAGTGTCACTAGTATGCC 57.542 45.455 5.21 0.00 0.00 4.40
27 28 5.230942 ACAAACAGAGTGTCACTAGTATGC 58.769 41.667 5.21 0.00 0.00 3.14
28 29 6.682746 AGACAAACAGAGTGTCACTAGTATG 58.317 40.000 5.21 5.56 46.44 2.39
29 30 6.902771 AGACAAACAGAGTGTCACTAGTAT 57.097 37.500 5.21 0.00 46.44 2.12
30 31 7.447545 ACATAGACAAACAGAGTGTCACTAGTA 59.552 37.037 5.21 0.00 46.44 1.82
31 32 6.265649 ACATAGACAAACAGAGTGTCACTAGT 59.734 38.462 5.21 5.11 46.44 2.57
32 33 6.682746 ACATAGACAAACAGAGTGTCACTAG 58.317 40.000 5.21 4.44 46.44 2.57
33 34 6.650427 ACATAGACAAACAGAGTGTCACTA 57.350 37.500 5.21 0.00 46.44 2.74
34 35 5.537300 ACATAGACAAACAGAGTGTCACT 57.463 39.130 4.81 4.81 46.44 3.41
35 36 7.598869 TGAATACATAGACAAACAGAGTGTCAC 59.401 37.037 7.26 0.00 46.44 3.67
36 37 7.598869 GTGAATACATAGACAAACAGAGTGTCA 59.401 37.037 7.26 0.00 46.44 3.58
37 38 7.598869 TGTGAATACATAGACAAACAGAGTGTC 59.401 37.037 0.00 0.00 44.75 3.67
38 39 7.385205 GTGTGAATACATAGACAAACAGAGTGT 59.615 37.037 0.00 0.00 39.39 3.55
39 40 7.384932 TGTGTGAATACATAGACAAACAGAGTG 59.615 37.037 0.00 0.00 39.39 3.51
40 41 7.441836 TGTGTGAATACATAGACAAACAGAGT 58.558 34.615 0.00 0.00 39.39 3.24
41 42 7.889589 TGTGTGAATACATAGACAAACAGAG 57.110 36.000 0.00 0.00 39.39 3.35
42 43 7.877612 ACATGTGTGAATACATAGACAAACAGA 59.122 33.333 0.00 0.00 39.17 3.41
43 44 8.032952 ACATGTGTGAATACATAGACAAACAG 57.967 34.615 0.00 0.00 39.17 3.16
44 45 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
55 56 9.935682 CCAGAAACATAATACATGTGTGAATAC 57.064 33.333 9.11 0.00 31.80 1.89
56 57 9.679661 ACCAGAAACATAATACATGTGTGAATA 57.320 29.630 9.11 0.00 31.80 1.75
57 58 8.579850 ACCAGAAACATAATACATGTGTGAAT 57.420 30.769 9.11 0.00 31.80 2.57
58 59 7.994425 ACCAGAAACATAATACATGTGTGAA 57.006 32.000 9.11 0.00 31.80 3.18
59 60 7.994425 AACCAGAAACATAATACATGTGTGA 57.006 32.000 9.11 0.00 31.80 3.58
72 73 9.461312 TGCTAGAATTGTATTAACCAGAAACAT 57.539 29.630 0.00 0.00 0.00 2.71
73 74 8.856153 TGCTAGAATTGTATTAACCAGAAACA 57.144 30.769 0.00 0.00 0.00 2.83
74 75 9.722056 CATGCTAGAATTGTATTAACCAGAAAC 57.278 33.333 0.00 0.00 0.00 2.78
75 76 9.679661 TCATGCTAGAATTGTATTAACCAGAAA 57.320 29.630 0.00 0.00 0.00 2.52
76 77 9.679661 TTCATGCTAGAATTGTATTAACCAGAA 57.320 29.630 0.00 0.00 0.00 3.02
77 78 9.851686 ATTCATGCTAGAATTGTATTAACCAGA 57.148 29.630 0.00 0.00 34.70 3.86
153 154 4.349342 ACTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
154 155 5.559148 ACTGAAGGAAATATGCCCTAGAG 57.441 43.478 0.00 0.46 31.36 2.43
155 156 5.191722 ACAACTGAAGGAAATATGCCCTAGA 59.808 40.000 0.00 0.00 31.36 2.43
156 157 5.440610 ACAACTGAAGGAAATATGCCCTAG 58.559 41.667 0.00 0.00 31.36 3.02
157 158 5.450818 ACAACTGAAGGAAATATGCCCTA 57.549 39.130 0.00 0.00 31.36 3.53
158 159 4.322057 ACAACTGAAGGAAATATGCCCT 57.678 40.909 0.00 0.00 0.00 5.19
159 160 5.405935 AAACAACTGAAGGAAATATGCCC 57.594 39.130 0.00 0.00 0.00 5.36
160 161 6.152831 ACCTAAACAACTGAAGGAAATATGCC 59.847 38.462 0.00 0.00 33.16 4.40
161 162 7.158099 ACCTAAACAACTGAAGGAAATATGC 57.842 36.000 0.00 0.00 33.16 3.14
164 165 9.856162 AACTAACCTAAACAACTGAAGGAAATA 57.144 29.630 0.00 0.00 33.16 1.40
165 166 8.762481 AACTAACCTAAACAACTGAAGGAAAT 57.238 30.769 0.00 0.00 33.16 2.17
166 167 8.584063 AAACTAACCTAAACAACTGAAGGAAA 57.416 30.769 0.00 0.00 33.16 3.13
167 168 8.584063 AAAACTAACCTAAACAACTGAAGGAA 57.416 30.769 0.00 0.00 33.16 3.36
168 169 8.584063 AAAAACTAACCTAAACAACTGAAGGA 57.416 30.769 0.00 0.00 33.16 3.36
191 192 1.631388 TGTCGCCCCTATCAGGAAAAA 59.369 47.619 0.00 0.00 37.67 1.94
192 193 1.281419 TGTCGCCCCTATCAGGAAAA 58.719 50.000 0.00 0.00 37.67 2.29
193 194 1.507140 ATGTCGCCCCTATCAGGAAA 58.493 50.000 0.00 0.00 37.67 3.13
194 195 1.507140 AATGTCGCCCCTATCAGGAA 58.493 50.000 0.00 0.00 37.67 3.36
195 196 2.391926 TAATGTCGCCCCTATCAGGA 57.608 50.000 0.00 0.00 37.67 3.86
196 197 2.303022 ACATAATGTCGCCCCTATCAGG 59.697 50.000 0.00 0.00 34.30 3.86
197 198 3.329386 CACATAATGTCGCCCCTATCAG 58.671 50.000 0.00 0.00 0.00 2.90
198 199 2.038426 CCACATAATGTCGCCCCTATCA 59.962 50.000 0.00 0.00 0.00 2.15
199 200 2.038557 ACCACATAATGTCGCCCCTATC 59.961 50.000 0.00 0.00 0.00 2.08
200 201 2.054799 ACCACATAATGTCGCCCCTAT 58.945 47.619 0.00 0.00 0.00 2.57
201 202 1.140052 CACCACATAATGTCGCCCCTA 59.860 52.381 0.00 0.00 0.00 3.53
202 203 0.107214 CACCACATAATGTCGCCCCT 60.107 55.000 0.00 0.00 0.00 4.79
203 204 1.101049 CCACCACATAATGTCGCCCC 61.101 60.000 0.00 0.00 0.00 5.80
204 205 1.724582 GCCACCACATAATGTCGCCC 61.725 60.000 0.00 0.00 0.00 6.13
205 206 1.029408 TGCCACCACATAATGTCGCC 61.029 55.000 0.00 0.00 0.00 5.54
206 207 0.808125 TTGCCACCACATAATGTCGC 59.192 50.000 0.00 0.00 0.00 5.19
207 208 2.795681 GCATTGCCACCACATAATGTCG 60.796 50.000 0.00 0.00 34.04 4.35
208 209 2.428171 AGCATTGCCACCACATAATGTC 59.572 45.455 4.70 0.00 34.04 3.06
209 210 2.459644 AGCATTGCCACCACATAATGT 58.540 42.857 4.70 0.00 34.04 2.71
210 211 3.119065 TGAAGCATTGCCACCACATAATG 60.119 43.478 4.70 0.00 34.51 1.90
211 212 3.098377 TGAAGCATTGCCACCACATAAT 58.902 40.909 4.70 0.00 0.00 1.28
212 213 2.523245 TGAAGCATTGCCACCACATAA 58.477 42.857 4.70 0.00 0.00 1.90
213 214 2.212812 TGAAGCATTGCCACCACATA 57.787 45.000 4.70 0.00 0.00 2.29
214 215 1.479323 GATGAAGCATTGCCACCACAT 59.521 47.619 4.70 4.44 0.00 3.21
215 216 0.889994 GATGAAGCATTGCCACCACA 59.110 50.000 4.70 0.00 0.00 4.17
216 217 1.180029 AGATGAAGCATTGCCACCAC 58.820 50.000 4.70 0.00 0.00 4.16
217 218 1.820519 GAAGATGAAGCATTGCCACCA 59.179 47.619 4.70 1.37 0.00 4.17
218 219 1.202222 CGAAGATGAAGCATTGCCACC 60.202 52.381 4.70 0.00 0.00 4.61
219 220 1.739466 TCGAAGATGAAGCATTGCCAC 59.261 47.619 4.70 0.29 0.00 5.01
220 221 2.011947 CTCGAAGATGAAGCATTGCCA 58.988 47.619 4.70 0.00 33.89 4.92
221 222 1.268437 GCTCGAAGATGAAGCATTGCC 60.268 52.381 4.70 0.00 33.89 4.52
222 223 1.268437 GGCTCGAAGATGAAGCATTGC 60.268 52.381 0.00 0.00 33.89 3.56
223 224 1.004185 CGGCTCGAAGATGAAGCATTG 60.004 52.381 0.00 0.00 33.89 2.82
224 225 1.293924 CGGCTCGAAGATGAAGCATT 58.706 50.000 0.00 0.00 33.89 3.56
225 226 1.156645 GCGGCTCGAAGATGAAGCAT 61.157 55.000 0.00 0.00 33.89 3.79
226 227 1.811266 GCGGCTCGAAGATGAAGCA 60.811 57.895 0.00 0.00 33.89 3.91
227 228 1.486644 GAGCGGCTCGAAGATGAAGC 61.487 60.000 15.09 0.00 33.89 3.86
228 229 0.102120 AGAGCGGCTCGAAGATGAAG 59.898 55.000 23.15 0.00 35.36 3.02
229 230 0.532573 AAGAGCGGCTCGAAGATGAA 59.467 50.000 23.15 0.00 35.36 2.57
230 231 0.532573 AAAGAGCGGCTCGAAGATGA 59.467 50.000 23.15 0.00 35.36 2.92
231 232 0.926846 GAAAGAGCGGCTCGAAGATG 59.073 55.000 23.15 0.00 35.36 2.90
232 233 0.526524 CGAAAGAGCGGCTCGAAGAT 60.527 55.000 23.15 9.62 35.36 2.40
233 234 1.154016 CGAAAGAGCGGCTCGAAGA 60.154 57.895 23.15 0.00 35.36 2.87
234 235 1.444553 ACGAAAGAGCGGCTCGAAG 60.445 57.895 23.15 17.48 35.36 3.79
235 236 1.733041 CACGAAAGAGCGGCTCGAA 60.733 57.895 23.15 0.00 35.36 3.71
236 237 2.126463 CACGAAAGAGCGGCTCGA 60.126 61.111 23.15 0.00 35.36 4.04
237 238 3.843240 GCACGAAAGAGCGGCTCG 61.843 66.667 23.15 15.20 38.08 5.03
242 243 5.296965 GAGGATCAAAGCACGAAAGAGCG 62.297 52.174 0.00 0.00 44.04 5.03
243 244 2.095053 GAGGATCAAAGCACGAAAGAGC 59.905 50.000 0.00 0.00 41.18 4.09
244 245 2.675348 GGAGGATCAAAGCACGAAAGAG 59.325 50.000 0.00 0.00 36.25 2.85
245 246 2.303022 AGGAGGATCAAAGCACGAAAGA 59.697 45.455 0.00 0.00 36.25 2.52
246 247 2.704572 AGGAGGATCAAAGCACGAAAG 58.295 47.619 0.00 0.00 36.25 2.62
247 248 2.813754 CAAGGAGGATCAAAGCACGAAA 59.186 45.455 0.00 0.00 36.25 3.46
248 249 2.224523 ACAAGGAGGATCAAAGCACGAA 60.225 45.455 0.00 0.00 36.25 3.85
249 250 1.347707 ACAAGGAGGATCAAAGCACGA 59.652 47.619 0.00 0.00 36.25 4.35
250 251 1.466167 CACAAGGAGGATCAAAGCACG 59.534 52.381 0.00 0.00 36.25 5.34
251 252 2.508526 ACACAAGGAGGATCAAAGCAC 58.491 47.619 0.00 0.00 36.25 4.40
252 253 2.957402 ACACAAGGAGGATCAAAGCA 57.043 45.000 0.00 0.00 36.25 3.91
253 254 2.160417 CGAACACAAGGAGGATCAAAGC 59.840 50.000 0.00 0.00 36.25 3.51
254 255 3.403038 ACGAACACAAGGAGGATCAAAG 58.597 45.455 0.00 0.00 36.25 2.77
255 256 3.399330 GACGAACACAAGGAGGATCAAA 58.601 45.455 0.00 0.00 36.25 2.69
256 257 2.289444 GGACGAACACAAGGAGGATCAA 60.289 50.000 0.00 0.00 36.25 2.57
257 258 1.275291 GGACGAACACAAGGAGGATCA 59.725 52.381 0.00 0.00 36.25 2.92
258 259 1.275291 TGGACGAACACAAGGAGGATC 59.725 52.381 0.00 0.00 0.00 3.36
259 260 1.348064 TGGACGAACACAAGGAGGAT 58.652 50.000 0.00 0.00 0.00 3.24
260 261 1.348064 ATGGACGAACACAAGGAGGA 58.652 50.000 0.00 0.00 0.00 3.71
261 262 2.185004 AATGGACGAACACAAGGAGG 57.815 50.000 0.00 0.00 0.00 4.30
262 263 3.056107 TCCTAATGGACGAACACAAGGAG 60.056 47.826 10.16 0.00 37.46 3.69
263 264 2.901192 TCCTAATGGACGAACACAAGGA 59.099 45.455 10.16 10.16 37.46 3.36
264 265 3.328382 TCCTAATGGACGAACACAAGG 57.672 47.619 0.00 0.00 37.46 3.61
275 276 2.103094 CCAATGCTCTCGTCCTAATGGA 59.897 50.000 0.00 0.00 40.69 3.41
276 277 2.487934 CCAATGCTCTCGTCCTAATGG 58.512 52.381 0.00 0.00 0.00 3.16
277 278 1.869767 GCCAATGCTCTCGTCCTAATG 59.130 52.381 0.00 0.00 33.53 1.90
278 279 1.539065 CGCCAATGCTCTCGTCCTAAT 60.539 52.381 0.00 0.00 34.43 1.73
279 280 0.179111 CGCCAATGCTCTCGTCCTAA 60.179 55.000 0.00 0.00 34.43 2.69
280 281 1.320344 ACGCCAATGCTCTCGTCCTA 61.320 55.000 0.00 0.00 34.43 2.94
281 282 1.320344 TACGCCAATGCTCTCGTCCT 61.320 55.000 0.00 0.00 36.50 3.85
282 283 0.872021 CTACGCCAATGCTCTCGTCC 60.872 60.000 0.00 0.00 36.50 4.79
283 284 0.100682 TCTACGCCAATGCTCTCGTC 59.899 55.000 0.00 0.00 36.50 4.20
284 285 0.747255 ATCTACGCCAATGCTCTCGT 59.253 50.000 0.00 0.00 38.75 4.18
285 286 1.858091 AATCTACGCCAATGCTCTCG 58.142 50.000 0.00 0.00 34.43 4.04
286 287 3.983741 ACTAATCTACGCCAATGCTCTC 58.016 45.455 0.00 0.00 34.43 3.20
287 288 4.262079 GGTACTAATCTACGCCAATGCTCT 60.262 45.833 0.00 0.00 34.43 4.09
288 289 3.988517 GGTACTAATCTACGCCAATGCTC 59.011 47.826 0.00 0.00 34.43 4.26
289 290 3.244112 GGGTACTAATCTACGCCAATGCT 60.244 47.826 0.00 0.00 34.43 3.79
290 291 3.064931 GGGTACTAATCTACGCCAATGC 58.935 50.000 0.00 0.00 0.00 3.56
291 292 4.602340 AGGGTACTAATCTACGCCAATG 57.398 45.455 0.00 0.00 31.47 2.82
292 293 5.625568 AAAGGGTACTAATCTACGCCAAT 57.374 39.130 0.00 0.00 31.47 3.16
293 294 5.425196 AAAAGGGTACTAATCTACGCCAA 57.575 39.130 0.00 0.00 31.47 4.52
294 295 5.425196 AAAAAGGGTACTAATCTACGCCA 57.575 39.130 0.00 0.00 31.47 5.69
315 316 4.271661 ACCTTAACCTCACCGTTCAAAAA 58.728 39.130 0.00 0.00 0.00 1.94
316 317 3.888583 ACCTTAACCTCACCGTTCAAAA 58.111 40.909 0.00 0.00 0.00 2.44
317 318 3.564053 ACCTTAACCTCACCGTTCAAA 57.436 42.857 0.00 0.00 0.00 2.69
318 319 3.564053 AACCTTAACCTCACCGTTCAA 57.436 42.857 0.00 0.00 0.00 2.69
319 320 3.135167 AGAAACCTTAACCTCACCGTTCA 59.865 43.478 0.00 0.00 0.00 3.18
320 321 3.736720 AGAAACCTTAACCTCACCGTTC 58.263 45.455 0.00 0.00 0.00 3.95
321 322 3.851458 AGAAACCTTAACCTCACCGTT 57.149 42.857 0.00 0.00 0.00 4.44
322 323 3.473625 CAAGAAACCTTAACCTCACCGT 58.526 45.455 0.00 0.00 0.00 4.83
323 324 2.225727 GCAAGAAACCTTAACCTCACCG 59.774 50.000 0.00 0.00 0.00 4.94
324 325 2.557056 GGCAAGAAACCTTAACCTCACC 59.443 50.000 0.00 0.00 0.00 4.02
325 326 3.219281 TGGCAAGAAACCTTAACCTCAC 58.781 45.455 0.00 0.00 0.00 3.51
326 327 3.586470 TGGCAAGAAACCTTAACCTCA 57.414 42.857 0.00 0.00 0.00 3.86
327 328 4.280929 ACATTGGCAAGAAACCTTAACCTC 59.719 41.667 5.96 0.00 0.00 3.85
328 329 4.039124 CACATTGGCAAGAAACCTTAACCT 59.961 41.667 5.96 0.00 0.00 3.50
329 330 4.306600 CACATTGGCAAGAAACCTTAACC 58.693 43.478 5.96 0.00 0.00 2.85
330 331 3.740832 GCACATTGGCAAGAAACCTTAAC 59.259 43.478 5.96 0.00 0.00 2.01
331 332 3.386078 TGCACATTGGCAAGAAACCTTAA 59.614 39.130 5.96 0.00 41.65 1.85
332 333 2.961741 TGCACATTGGCAAGAAACCTTA 59.038 40.909 5.96 0.00 41.65 2.69
333 334 1.761784 TGCACATTGGCAAGAAACCTT 59.238 42.857 5.96 0.00 41.65 3.50
334 335 1.069049 GTGCACATTGGCAAGAAACCT 59.931 47.619 13.17 0.00 46.93 3.50
335 336 1.501169 GTGCACATTGGCAAGAAACC 58.499 50.000 13.17 0.00 46.93 3.27
336 337 1.130955 CGTGCACATTGGCAAGAAAC 58.869 50.000 18.64 0.00 46.93 2.78
337 338 1.028130 TCGTGCACATTGGCAAGAAA 58.972 45.000 18.64 0.00 46.57 2.52
338 339 2.712984 TCGTGCACATTGGCAAGAA 58.287 47.368 18.64 0.00 46.57 2.52
340 341 1.440850 CGTCGTGCACATTGGCAAG 60.441 57.895 18.64 0.50 46.93 4.01
341 342 2.636462 CGTCGTGCACATTGGCAA 59.364 55.556 18.64 0.68 46.93 4.52
342 343 3.353029 CCGTCGTGCACATTGGCA 61.353 61.111 18.64 0.00 42.53 4.92
343 344 4.759096 GCCGTCGTGCACATTGGC 62.759 66.667 22.46 22.46 35.04 4.52
344 345 4.444024 CGCCGTCGTGCACATTGG 62.444 66.667 18.64 15.16 0.00 3.16
345 346 3.353114 CTCGCCGTCGTGCACATTG 62.353 63.158 18.64 4.90 36.96 2.82
346 347 2.835701 ATCTCGCCGTCGTGCACATT 62.836 55.000 18.64 0.00 36.96 2.71
347 348 2.835701 AATCTCGCCGTCGTGCACAT 62.836 55.000 18.64 0.00 36.96 3.21
348 349 3.567478 AATCTCGCCGTCGTGCACA 62.567 57.895 18.64 0.81 36.96 4.57
349 350 2.380410 AAATCTCGCCGTCGTGCAC 61.380 57.895 6.82 6.82 36.96 4.57
350 351 2.048597 AAATCTCGCCGTCGTGCA 60.049 55.556 6.53 0.00 36.96 4.57
351 352 2.395690 CAAATCTCGCCGTCGTGC 59.604 61.111 0.00 0.00 36.96 5.34
352 353 1.736645 ACCAAATCTCGCCGTCGTG 60.737 57.895 0.00 0.00 36.96 4.35
353 354 1.736645 CACCAAATCTCGCCGTCGT 60.737 57.895 0.00 0.00 36.96 4.34
354 355 3.081133 CACCAAATCTCGCCGTCG 58.919 61.111 0.00 0.00 0.00 5.12
355 356 2.750888 GGCACCAAATCTCGCCGTC 61.751 63.158 0.00 0.00 34.26 4.79
356 357 2.746277 GGCACCAAATCTCGCCGT 60.746 61.111 0.00 0.00 34.26 5.68
358 359 2.409870 CCTGGCACCAAATCTCGCC 61.410 63.158 0.00 0.00 45.11 5.54
359 360 3.056313 GCCTGGCACCAAATCTCGC 62.056 63.158 15.17 0.00 0.00 5.03
360 361 1.675310 TGCCTGGCACCAAATCTCG 60.675 57.895 19.30 0.00 31.71 4.04
361 362 4.421365 TGCCTGGCACCAAATCTC 57.579 55.556 19.30 0.00 31.71 2.75
370 371 0.749818 TCGTTTTGAAGTGCCTGGCA 60.750 50.000 19.30 19.30 35.60 4.92
371 372 0.598065 ATCGTTTTGAAGTGCCTGGC 59.402 50.000 12.87 12.87 0.00 4.85
372 373 2.293122 TGAATCGTTTTGAAGTGCCTGG 59.707 45.455 0.00 0.00 0.00 4.45
373 374 3.624326 TGAATCGTTTTGAAGTGCCTG 57.376 42.857 0.00 0.00 0.00 4.85
374 375 4.549458 CATTGAATCGTTTTGAAGTGCCT 58.451 39.130 0.00 0.00 0.00 4.75
375 376 3.674753 CCATTGAATCGTTTTGAAGTGCC 59.325 43.478 0.00 0.00 0.00 5.01
376 377 4.298332 ACCATTGAATCGTTTTGAAGTGC 58.702 39.130 0.00 0.00 0.00 4.40
377 378 5.976534 TGAACCATTGAATCGTTTTGAAGTG 59.023 36.000 0.00 0.00 0.00 3.16
378 379 6.142818 TGAACCATTGAATCGTTTTGAAGT 57.857 33.333 0.00 0.00 0.00 3.01
379 380 7.359431 CCATTGAACCATTGAATCGTTTTGAAG 60.359 37.037 0.00 0.00 0.00 3.02
380 381 6.423302 CCATTGAACCATTGAATCGTTTTGAA 59.577 34.615 0.00 0.00 0.00 2.69
381 382 5.925397 CCATTGAACCATTGAATCGTTTTGA 59.075 36.000 0.00 0.00 0.00 2.69
382 383 5.389725 GCCATTGAACCATTGAATCGTTTTG 60.390 40.000 0.00 0.00 0.00 2.44
383 384 4.690280 GCCATTGAACCATTGAATCGTTTT 59.310 37.500 0.00 0.00 0.00 2.43
384 385 4.244862 GCCATTGAACCATTGAATCGTTT 58.755 39.130 0.00 0.00 0.00 3.60
385 386 3.257873 TGCCATTGAACCATTGAATCGTT 59.742 39.130 0.00 0.00 0.00 3.85
386 387 2.824936 TGCCATTGAACCATTGAATCGT 59.175 40.909 0.00 0.00 0.00 3.73
387 388 3.507103 TGCCATTGAACCATTGAATCG 57.493 42.857 0.00 0.00 0.00 3.34
388 389 8.339714 CAATTATTGCCATTGAACCATTGAATC 58.660 33.333 0.00 0.00 34.05 2.52
389 390 8.215926 CAATTATTGCCATTGAACCATTGAAT 57.784 30.769 0.00 0.00 34.05 2.57
390 391 7.612668 CAATTATTGCCATTGAACCATTGAA 57.387 32.000 0.00 0.00 34.05 2.69
405 406 2.954074 AGCCAGAGCCGCAATTATTGC 61.954 52.381 18.91 18.91 45.25 3.56
406 407 1.027357 AGCCAGAGCCGCAATTATTG 58.973 50.000 0.00 0.00 41.25 1.90
407 408 1.406539 CAAGCCAGAGCCGCAATTATT 59.593 47.619 0.00 0.00 41.25 1.40
408 409 1.027357 CAAGCCAGAGCCGCAATTAT 58.973 50.000 0.00 0.00 41.25 1.28
409 410 1.656818 GCAAGCCAGAGCCGCAATTA 61.657 55.000 0.00 0.00 41.25 1.40
410 411 2.998279 GCAAGCCAGAGCCGCAATT 61.998 57.895 0.00 0.00 41.25 2.32
411 412 3.446570 GCAAGCCAGAGCCGCAAT 61.447 61.111 0.00 0.00 41.25 3.56
412 413 4.648626 AGCAAGCCAGAGCCGCAA 62.649 61.111 0.00 0.00 39.74 4.85
415 416 1.310933 AAATCAGCAAGCCAGAGCCG 61.311 55.000 0.00 0.00 41.25 5.52
416 417 0.893447 AAAATCAGCAAGCCAGAGCC 59.107 50.000 0.00 0.00 41.25 4.70
417 418 2.738013 AAAAATCAGCAAGCCAGAGC 57.262 45.000 0.00 0.00 40.32 4.09
418 419 4.380233 CCACTAAAAATCAGCAAGCCAGAG 60.380 45.833 0.00 0.00 0.00 3.35
419 420 3.507233 CCACTAAAAATCAGCAAGCCAGA 59.493 43.478 0.00 0.00 0.00 3.86
420 421 3.841643 CCACTAAAAATCAGCAAGCCAG 58.158 45.455 0.00 0.00 0.00 4.85
421 422 2.029110 GCCACTAAAAATCAGCAAGCCA 60.029 45.455 0.00 0.00 0.00 4.75
422 423 2.029110 TGCCACTAAAAATCAGCAAGCC 60.029 45.455 0.00 0.00 0.00 4.35
423 424 2.989166 GTGCCACTAAAAATCAGCAAGC 59.011 45.455 0.00 0.00 31.03 4.01
424 425 3.236816 CGTGCCACTAAAAATCAGCAAG 58.763 45.455 0.00 0.00 31.03 4.01
425 426 2.621055 ACGTGCCACTAAAAATCAGCAA 59.379 40.909 0.00 0.00 31.03 3.91
426 427 2.031245 CACGTGCCACTAAAAATCAGCA 60.031 45.455 0.82 0.00 0.00 4.41
427 428 2.584791 CACGTGCCACTAAAAATCAGC 58.415 47.619 0.82 0.00 0.00 4.26
428 429 2.584791 GCACGTGCCACTAAAAATCAG 58.415 47.619 30.12 0.00 34.31 2.90
429 430 1.069568 CGCACGTGCCACTAAAAATCA 60.070 47.619 33.23 0.00 37.91 2.57
430 431 1.069500 ACGCACGTGCCACTAAAAATC 60.069 47.619 33.23 3.11 37.91 2.17
431 432 0.948678 ACGCACGTGCCACTAAAAAT 59.051 45.000 33.23 6.07 37.91 1.82
432 433 0.028242 CACGCACGTGCCACTAAAAA 59.972 50.000 33.23 0.00 39.39 1.94
433 434 0.810426 TCACGCACGTGCCACTAAAA 60.810 50.000 33.23 10.29 45.04 1.52
434 435 0.810426 TTCACGCACGTGCCACTAAA 60.810 50.000 33.23 17.69 45.04 1.85
435 436 1.218875 CTTCACGCACGTGCCACTAA 61.219 55.000 33.23 20.43 45.04 2.24
436 437 1.663388 CTTCACGCACGTGCCACTA 60.663 57.895 33.23 16.12 45.04 2.74
437 438 2.967076 CTTCACGCACGTGCCACT 60.967 61.111 33.23 14.29 45.04 4.00
438 439 3.223435 GACTTCACGCACGTGCCAC 62.223 63.158 33.23 13.41 45.04 5.01
439 440 2.916502 AAGACTTCACGCACGTGCCA 62.917 55.000 33.23 15.79 45.04 4.92
440 441 2.244651 AAGACTTCACGCACGTGCC 61.245 57.895 33.23 17.89 45.04 5.01
441 442 1.083401 CAAGACTTCACGCACGTGC 60.083 57.895 30.42 30.42 45.04 5.34
442 443 1.083401 GCAAGACTTCACGCACGTG 60.083 57.895 16.73 16.73 46.64 4.49
443 444 2.244651 GGCAAGACTTCACGCACGT 61.245 57.895 0.00 0.00 0.00 4.49
444 445 2.551270 GGCAAGACTTCACGCACG 59.449 61.111 0.00 0.00 0.00 5.34
445 446 2.551270 CGGCAAGACTTCACGCAC 59.449 61.111 0.00 0.00 0.00 5.34
446 447 2.664851 CCGGCAAGACTTCACGCA 60.665 61.111 0.00 0.00 0.00 5.24
447 448 2.171489 GAACCGGCAAGACTTCACGC 62.171 60.000 0.00 0.00 0.00 5.34
448 449 0.600255 AGAACCGGCAAGACTTCACG 60.600 55.000 0.00 1.98 0.00 4.35
449 450 1.149148 GAGAACCGGCAAGACTTCAC 58.851 55.000 0.00 0.00 0.00 3.18
450 451 0.756294 TGAGAACCGGCAAGACTTCA 59.244 50.000 0.00 0.00 0.00 3.02
451 452 2.100605 ATGAGAACCGGCAAGACTTC 57.899 50.000 0.00 0.00 0.00 3.01
452 453 2.832129 TCTATGAGAACCGGCAAGACTT 59.168 45.455 0.00 0.00 0.00 3.01
453 454 2.166664 GTCTATGAGAACCGGCAAGACT 59.833 50.000 0.00 0.00 31.41 3.24
454 455 2.094182 TGTCTATGAGAACCGGCAAGAC 60.094 50.000 0.00 8.01 34.00 3.01
455 456 2.176045 TGTCTATGAGAACCGGCAAGA 58.824 47.619 0.00 0.00 0.00 3.02
456 457 2.672961 TGTCTATGAGAACCGGCAAG 57.327 50.000 0.00 0.00 0.00 4.01
457 458 2.565391 TCTTGTCTATGAGAACCGGCAA 59.435 45.455 0.00 0.00 0.00 4.52
458 459 2.176045 TCTTGTCTATGAGAACCGGCA 58.824 47.619 0.00 0.00 0.00 5.69
459 460 2.961526 TCTTGTCTATGAGAACCGGC 57.038 50.000 0.00 0.00 0.00 6.13
460 461 4.655762 TGATCTTGTCTATGAGAACCGG 57.344 45.455 0.00 0.00 0.00 5.28
461 462 5.694006 GGATTGATCTTGTCTATGAGAACCG 59.306 44.000 0.00 0.00 0.00 4.44
462 463 5.694006 CGGATTGATCTTGTCTATGAGAACC 59.306 44.000 0.00 0.00 0.00 3.62
463 464 6.419413 GTCGGATTGATCTTGTCTATGAGAAC 59.581 42.308 0.00 0.00 0.00 3.01
464 465 6.322456 AGTCGGATTGATCTTGTCTATGAGAA 59.678 38.462 0.00 0.00 0.00 2.87
465 466 5.830457 AGTCGGATTGATCTTGTCTATGAGA 59.170 40.000 0.00 0.00 0.00 3.27
466 467 6.083098 AGTCGGATTGATCTTGTCTATGAG 57.917 41.667 0.00 0.00 0.00 2.90
467 468 5.010112 GGAGTCGGATTGATCTTGTCTATGA 59.990 44.000 0.00 0.00 0.00 2.15
468 469 5.226396 GGAGTCGGATTGATCTTGTCTATG 58.774 45.833 0.00 0.00 0.00 2.23
469 470 4.022762 CGGAGTCGGATTGATCTTGTCTAT 60.023 45.833 0.00 0.00 0.00 1.98
470 471 3.315470 CGGAGTCGGATTGATCTTGTCTA 59.685 47.826 0.00 0.00 0.00 2.59
471 472 2.099921 CGGAGTCGGATTGATCTTGTCT 59.900 50.000 0.00 0.00 0.00 3.41
472 473 2.464865 CGGAGTCGGATTGATCTTGTC 58.535 52.381 0.00 0.00 0.00 3.18
473 474 2.586258 CGGAGTCGGATTGATCTTGT 57.414 50.000 0.00 0.00 0.00 3.16
491 492 4.883300 GTCGTCGCTCCGCTACCG 62.883 72.222 0.00 0.00 0.00 4.02
492 493 2.985486 GATGTCGTCGCTCCGCTACC 62.985 65.000 0.00 0.00 0.00 3.18
493 494 1.654743 GATGTCGTCGCTCCGCTAC 60.655 63.158 0.00 0.00 0.00 3.58
494 495 2.713770 GATGTCGTCGCTCCGCTA 59.286 61.111 0.00 0.00 0.00 4.26
495 496 4.538283 CGATGTCGTCGCTCCGCT 62.538 66.667 0.67 0.00 44.33 5.52
503 504 3.179265 CCGTGTGCCGATGTCGTC 61.179 66.667 1.44 0.00 39.56 4.20
504 505 3.986006 ACCGTGTGCCGATGTCGT 61.986 61.111 1.44 0.00 39.56 4.34
505 506 3.478394 CACCGTGTGCCGATGTCG 61.478 66.667 0.00 0.00 39.56 4.35
506 507 3.118454 CCACCGTGTGCCGATGTC 61.118 66.667 0.00 0.00 39.56 3.06
509 510 4.760047 GAGCCACCGTGTGCCGAT 62.760 66.667 7.99 0.00 39.56 4.18
512 513 2.672996 AATGAGCCACCGTGTGCC 60.673 61.111 7.99 2.58 31.34 5.01
513 514 2.870372 GAATGAGCCACCGTGTGC 59.130 61.111 0.00 1.02 31.34 4.57
514 515 3.027170 GCGAATGAGCCACCGTGTG 62.027 63.158 0.00 0.00 0.00 3.82
515 516 2.742372 GCGAATGAGCCACCGTGT 60.742 61.111 0.00 0.00 0.00 4.49
516 517 3.853330 CGCGAATGAGCCACCGTG 61.853 66.667 0.00 0.00 0.00 4.94
517 518 4.063967 TCGCGAATGAGCCACCGT 62.064 61.111 6.20 0.00 0.00 4.83
518 519 3.554692 GTCGCGAATGAGCCACCG 61.555 66.667 12.06 0.00 0.00 4.94
519 520 3.554692 CGTCGCGAATGAGCCACC 61.555 66.667 12.06 0.00 0.00 4.61
520 521 0.594028 TATCGTCGCGAATGAGCCAC 60.594 55.000 12.06 0.00 39.99 5.01
521 522 0.317854 CTATCGTCGCGAATGAGCCA 60.318 55.000 12.06 1.02 39.99 4.75
522 523 0.317938 ACTATCGTCGCGAATGAGCC 60.318 55.000 12.06 0.00 39.99 4.70
523 524 0.772926 CACTATCGTCGCGAATGAGC 59.227 55.000 12.06 0.00 39.99 4.26
524 525 1.268589 ACCACTATCGTCGCGAATGAG 60.269 52.381 12.06 8.76 39.99 2.90
525 526 0.736636 ACCACTATCGTCGCGAATGA 59.263 50.000 12.06 13.16 39.99 2.57
526 527 1.255342 CAACCACTATCGTCGCGAATG 59.745 52.381 12.06 6.86 39.99 2.67
527 528 1.135199 ACAACCACTATCGTCGCGAAT 60.135 47.619 12.06 4.02 39.99 3.34
528 529 0.241749 ACAACCACTATCGTCGCGAA 59.758 50.000 12.06 0.00 39.99 4.70
529 530 0.179181 GACAACCACTATCGTCGCGA 60.179 55.000 3.71 3.71 41.13 5.87
530 531 1.138047 GGACAACCACTATCGTCGCG 61.138 60.000 0.00 0.00 35.97 5.87
531 532 0.172803 AGGACAACCACTATCGTCGC 59.827 55.000 0.00 0.00 38.94 5.19
532 533 2.649331 AAGGACAACCACTATCGTCG 57.351 50.000 0.00 0.00 38.94 5.12
533 534 3.000727 CCAAAGGACAACCACTATCGTC 58.999 50.000 0.00 0.00 38.94 4.20
534 535 2.370849 ACCAAAGGACAACCACTATCGT 59.629 45.455 0.00 0.00 38.94 3.73
535 536 2.742053 CACCAAAGGACAACCACTATCG 59.258 50.000 0.00 0.00 38.94 2.92
536 537 2.488153 GCACCAAAGGACAACCACTATC 59.512 50.000 0.00 0.00 38.94 2.08
537 538 2.158534 TGCACCAAAGGACAACCACTAT 60.159 45.455 0.00 0.00 38.94 2.12
538 539 1.213182 TGCACCAAAGGACAACCACTA 59.787 47.619 0.00 0.00 38.94 2.74
539 540 0.033601 TGCACCAAAGGACAACCACT 60.034 50.000 0.00 0.00 38.94 4.00
540 541 0.102300 GTGCACCAAAGGACAACCAC 59.898 55.000 5.22 0.00 38.94 4.16
541 542 0.033601 AGTGCACCAAAGGACAACCA 60.034 50.000 14.63 0.00 38.94 3.67
542 543 0.385390 CAGTGCACCAAAGGACAACC 59.615 55.000 14.63 0.00 31.60 3.77
543 544 1.102978 ACAGTGCACCAAAGGACAAC 58.897 50.000 14.63 0.00 31.60 3.32
544 545 2.294074 GTACAGTGCACCAAAGGACAA 58.706 47.619 14.63 0.00 31.60 3.18
545 546 1.210722 TGTACAGTGCACCAAAGGACA 59.789 47.619 14.63 11.47 31.60 4.02
546 547 1.961793 TGTACAGTGCACCAAAGGAC 58.038 50.000 14.63 8.84 0.00 3.85
547 548 2.105649 TCATGTACAGTGCACCAAAGGA 59.894 45.455 14.63 0.00 0.00 3.36
548 549 2.503331 TCATGTACAGTGCACCAAAGG 58.497 47.619 14.63 0.68 0.00 3.11
549 550 3.503363 ACATCATGTACAGTGCACCAAAG 59.497 43.478 14.63 3.84 0.00 2.77
550 551 3.485394 ACATCATGTACAGTGCACCAAA 58.515 40.909 14.63 0.00 0.00 3.28
551 552 3.138884 ACATCATGTACAGTGCACCAA 57.861 42.857 14.63 0.00 0.00 3.67
552 553 2.857186 ACATCATGTACAGTGCACCA 57.143 45.000 14.63 4.38 0.00 4.17
553 554 7.496529 AAATATACATCATGTACAGTGCACC 57.503 36.000 14.63 0.00 35.42 5.01
687 688 4.276431 TCAAACATTTCAAGGTACCCGTTC 59.724 41.667 8.74 0.00 0.00 3.95
691 692 6.754193 TCAAATCAAACATTTCAAGGTACCC 58.246 36.000 8.74 0.00 0.00 3.69
696 697 8.367943 TGTCAATCAAATCAAACATTTCAAGG 57.632 30.769 0.00 0.00 0.00 3.61
839 857 2.985139 GAGTAAAGACACGGTGCTGTAC 59.015 50.000 17.72 17.72 0.00 2.90
840 858 2.351060 CGAGTAAAGACACGGTGCTGTA 60.351 50.000 8.30 3.44 36.19 2.74
841 859 1.602165 CGAGTAAAGACACGGTGCTGT 60.602 52.381 8.30 4.41 36.19 4.40
842 860 1.060713 CGAGTAAAGACACGGTGCTG 58.939 55.000 8.30 0.00 36.19 4.41
843 861 0.666577 GCGAGTAAAGACACGGTGCT 60.667 55.000 8.30 3.65 39.69 4.40
863 886 2.775032 TAACTGGGTCAGAACGCCGC 62.775 60.000 1.59 0.00 37.53 6.53
895 933 3.612860 CGTTGTAGAAGAACCGATCAAGG 59.387 47.826 0.00 0.00 37.30 3.61
910 948 1.270625 TGAGCCCAGGTTTCGTTGTAG 60.271 52.381 0.00 0.00 0.00 2.74
911 949 0.759959 TGAGCCCAGGTTTCGTTGTA 59.240 50.000 0.00 0.00 0.00 2.41
913 951 1.028905 TTTGAGCCCAGGTTTCGTTG 58.971 50.000 0.00 0.00 0.00 4.10
946 984 6.687604 ACCGAGCTTTGTTTTTAGCATTTAT 58.312 32.000 0.00 0.00 39.85 1.40
947 985 6.079424 ACCGAGCTTTGTTTTTAGCATTTA 57.921 33.333 0.00 0.00 39.85 1.40
948 986 4.944048 ACCGAGCTTTGTTTTTAGCATTT 58.056 34.783 0.00 0.00 39.85 2.32
949 987 4.546570 GACCGAGCTTTGTTTTTAGCATT 58.453 39.130 0.00 0.00 39.85 3.56
950 988 3.364964 CGACCGAGCTTTGTTTTTAGCAT 60.365 43.478 0.00 0.00 39.85 3.79
951 989 2.032377 CGACCGAGCTTTGTTTTTAGCA 60.032 45.455 0.00 0.00 39.85 3.49
952 990 2.222445 TCGACCGAGCTTTGTTTTTAGC 59.778 45.455 0.00 0.00 37.66 3.09
953 991 4.663636 ATCGACCGAGCTTTGTTTTTAG 57.336 40.909 0.00 0.00 0.00 1.85
954 992 5.427036 AAATCGACCGAGCTTTGTTTTTA 57.573 34.783 0.00 0.00 0.00 1.52
1215 1266 4.172232 CCGATCAGGGGAGGGGGA 62.172 72.222 0.00 0.00 35.97 4.81
1272 1338 1.846712 GAAGAAGAGGCTGCTGGGGT 61.847 60.000 0.00 0.00 0.00 4.95
1390 1775 2.047560 TCGACGAGGAGCACGAGA 60.048 61.111 0.00 0.00 34.70 4.04
1448 1833 4.760047 GTGCTGGTCGCCGGTGAT 62.760 66.667 22.69 0.00 38.05 3.06
1573 1958 3.918253 GATGCCCGCCAAGACCACA 62.918 63.158 0.00 0.00 0.00 4.17
1918 2318 3.610911 GTCGATCTCCCTTTTCCACAAT 58.389 45.455 0.00 0.00 0.00 2.71
2191 2592 9.965902 ATCAATCAATTGTAGAAAAGTACTCCT 57.034 29.630 5.13 0.00 38.84 3.69
2192 2593 9.994432 CATCAATCAATTGTAGAAAAGTACTCC 57.006 33.333 5.13 0.00 38.84 3.85
2193 2594 9.994432 CCATCAATCAATTGTAGAAAAGTACTC 57.006 33.333 5.13 0.00 38.84 2.59
2357 2784 7.070571 CCTCTGACCTCTGACCTCTAATAAAAT 59.929 40.741 0.00 0.00 0.00 1.82
2358 2785 6.381420 CCTCTGACCTCTGACCTCTAATAAAA 59.619 42.308 0.00 0.00 0.00 1.52
2360 2787 5.044030 ACCTCTGACCTCTGACCTCTAATAA 60.044 44.000 0.00 0.00 0.00 1.40
2362 2789 3.270960 ACCTCTGACCTCTGACCTCTAAT 59.729 47.826 0.00 0.00 0.00 1.73
2363 2790 2.650322 ACCTCTGACCTCTGACCTCTAA 59.350 50.000 0.00 0.00 0.00 2.10
2365 2792 1.080638 ACCTCTGACCTCTGACCTCT 58.919 55.000 0.00 0.00 0.00 3.69
2366 2793 2.650322 CTACCTCTGACCTCTGACCTC 58.350 57.143 0.00 0.00 0.00 3.85
2367 2794 1.341581 GCTACCTCTGACCTCTGACCT 60.342 57.143 0.00 0.00 0.00 3.85
2368 2795 1.107945 GCTACCTCTGACCTCTGACC 58.892 60.000 0.00 0.00 0.00 4.02
2369 2796 1.840737 TGCTACCTCTGACCTCTGAC 58.159 55.000 0.00 0.00 0.00 3.51
2370 2797 2.451490 CTTGCTACCTCTGACCTCTGA 58.549 52.381 0.00 0.00 0.00 3.27
2371 2798 1.134848 GCTTGCTACCTCTGACCTCTG 60.135 57.143 0.00 0.00 0.00 3.35
2372 2799 1.190643 GCTTGCTACCTCTGACCTCT 58.809 55.000 0.00 0.00 0.00 3.69
2375 2802 2.409948 AATGCTTGCTACCTCTGACC 57.590 50.000 0.00 0.00 0.00 4.02
2493 3938 5.242434 TCACTGGCATTATACGTCTTTTGT 58.758 37.500 0.00 0.00 0.00 2.83
2526 3971 2.146342 CTGTTTTCCATCTCAGTGCGT 58.854 47.619 0.00 0.00 0.00 5.24
2531 3976 3.063510 TCCAGCTGTTTTCCATCTCAG 57.936 47.619 13.81 0.00 0.00 3.35
2722 4224 1.081175 CTCTGACGCTTGCGAGTCA 60.081 57.895 22.03 14.00 45.71 3.41
3020 4554 6.038603 TGAGAGAGGAAAAACACATGTTTCAG 59.961 38.462 10.30 0.00 46.47 3.02
3070 4604 5.611374 ACCAAAGATACGATGGGATAACAG 58.389 41.667 0.00 0.00 38.58 3.16
3351 5627 1.244816 GGCGGCCTACTTTCAAGTTT 58.755 50.000 12.87 0.00 40.37 2.66
3352 5628 0.109723 TGGCGGCCTACTTTCAAGTT 59.890 50.000 21.46 0.00 40.37 2.66
3353 5629 0.328258 ATGGCGGCCTACTTTCAAGT 59.672 50.000 21.46 0.00 42.91 3.16
3354 5630 1.017387 GATGGCGGCCTACTTTCAAG 58.983 55.000 21.46 0.00 0.00 3.02
3355 5631 0.618458 AGATGGCGGCCTACTTTCAA 59.382 50.000 21.46 0.00 0.00 2.69
3356 5632 0.178068 GAGATGGCGGCCTACTTTCA 59.822 55.000 21.46 0.00 0.00 2.69
3357 5633 0.466124 AGAGATGGCGGCCTACTTTC 59.534 55.000 21.46 10.47 0.00 2.62
3422 5731 2.477863 GCACAGGAATTTATGCGTGGAC 60.478 50.000 0.00 0.00 0.00 4.02
3428 5737 2.099756 GGACCAGCACAGGAATTTATGC 59.900 50.000 0.00 0.00 38.39 3.14
3492 5801 3.714391 TGCGATCTCATTCTCATGACAG 58.286 45.455 0.00 0.00 34.22 3.51
3498 5813 3.778618 CAAGACTGCGATCTCATTCTCA 58.221 45.455 6.08 0.00 0.00 3.27
3499 5814 2.539274 GCAAGACTGCGATCTCATTCTC 59.461 50.000 6.08 0.00 39.20 2.87
3500 5815 2.548875 GCAAGACTGCGATCTCATTCT 58.451 47.619 0.04 0.04 39.20 2.40
3522 5837 3.957586 CACTGGGCTGGCCACTGA 61.958 66.667 20.19 0.00 37.98 3.41
3525 5840 4.729918 CCTCACTGGGCTGGCCAC 62.730 72.222 20.19 0.00 37.98 5.01
3619 5934 0.257039 AATCTGGGCACATGTCCTCC 59.743 55.000 3.79 0.00 41.34 4.30
3995 6341 7.201548 GCAGCAAAATCAGAAGAAGTTCAAAAA 60.202 33.333 5.50 0.00 34.82 1.94
4065 6411 9.013229 TGCTAAACATAAACATCAAAGTCATCT 57.987 29.630 0.00 0.00 0.00 2.90
4066 6412 9.624697 TTGCTAAACATAAACATCAAAGTCATC 57.375 29.630 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.