Multiple sequence alignment - TraesCS5A01G416700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G416700 chr5A 100.000 5389 0 0 1 5389 605228389 605223001 0.000000e+00 9952.0
1 TraesCS5A01G416700 chr5A 96.135 207 6 2 4619 4824 396391690 396391485 2.400000e-88 337.0
2 TraesCS5A01G416700 chr5A 95.122 205 10 0 4620 4824 391547124 391546920 1.870000e-84 324.0
3 TraesCS5A01G416700 chr5A 94.581 203 11 0 4624 4826 37637354 37637152 1.130000e-81 315.0
4 TraesCS5A01G416700 chr5A 88.889 207 13 5 5116 5318 622461819 622461619 4.170000e-61 246.0
5 TraesCS5A01G416700 chr5A 89.000 200 14 3 5119 5314 662369099 662368904 1.940000e-59 241.0
6 TraesCS5A01G416700 chr5B 93.946 2395 101 21 2094 4464 594915754 594913380 0.000000e+00 3579.0
7 TraesCS5A01G416700 chr5B 92.204 2142 129 24 1 2120 594917882 594915757 0.000000e+00 2996.0
8 TraesCS5A01G416700 chr5B 93.750 144 9 0 4938 5081 594913133 594912990 3.270000e-52 217.0
9 TraesCS5A01G416700 chr5B 89.844 128 10 3 4499 4623 594913311 594913184 1.550000e-35 161.0
10 TraesCS5A01G416700 chr5D 95.513 2095 49 25 2475 4538 483710494 483708414 0.000000e+00 3306.0
11 TraesCS5A01G416700 chr5D 91.884 1688 92 27 1 1666 483712854 483711190 0.000000e+00 2316.0
12 TraesCS5A01G416700 chr5D 88.571 735 49 17 1705 2437 483711188 483710487 0.000000e+00 859.0
13 TraesCS5A01G416700 chr1A 97.044 203 4 2 4620 4822 271624632 271624432 1.860000e-89 340.0
14 TraesCS5A01G416700 chr1A 92.308 39 3 0 5112 5150 567717163 567717125 7.540000e-04 56.5
15 TraesCS5A01G416700 chr7B 97.000 200 5 1 4624 4823 497919217 497919415 8.650000e-88 335.0
16 TraesCS5A01G416700 chr6A 96.000 200 7 1 4624 4823 564852438 564852240 1.870000e-84 324.0
17 TraesCS5A01G416700 chr3A 95.074 203 9 1 4620 4822 7919347 7919146 8.710000e-83 318.0
18 TraesCS5A01G416700 chr6B 93.780 209 13 0 4620 4828 402580112 402579904 1.130000e-81 315.0
19 TraesCS5A01G416700 chr7A 92.661 218 13 3 4608 4824 534534044 534533829 1.460000e-80 311.0
20 TraesCS5A01G416700 chr7D 87.745 204 15 5 5116 5314 113188374 113188572 4.200000e-56 230.0
21 TraesCS5A01G416700 chr7D 86.957 207 13 3 5116 5314 572997474 572997674 2.530000e-53 220.0
22 TraesCS5A01G416700 chr2A 87.421 159 15 2 5156 5314 519408338 519408185 1.540000e-40 178.0
23 TraesCS5A01G416700 chr1B 89.831 59 6 0 1998 2056 654503724 654503782 5.790000e-10 76.8
24 TraesCS5A01G416700 chr4D 95.349 43 2 0 5113 5155 164095442 164095484 9.690000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G416700 chr5A 605223001 605228389 5388 True 9952.000000 9952 100.000000 1 5389 1 chr5A.!!$R4 5388
1 TraesCS5A01G416700 chr5B 594912990 594917882 4892 True 1738.250000 3579 92.436000 1 5081 4 chr5B.!!$R1 5080
2 TraesCS5A01G416700 chr5D 483708414 483712854 4440 True 2160.333333 3306 91.989333 1 4538 3 chr5D.!!$R1 4537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 987 0.038892 CGAGGAGGGAAACGAAACGA 60.039 55.0 0.00 0.00 0.00 3.85 F
1041 1047 0.029567 CTCACGTGGTCCTATCGCTC 59.970 60.0 17.00 0.00 0.00 5.03 F
1042 1048 0.393944 TCACGTGGTCCTATCGCTCT 60.394 55.0 17.00 0.00 0.00 4.09 F
1576 1605 0.976073 TGCCTGTAGGACTGTAGGGC 60.976 60.0 1.17 0.00 37.39 5.19 F
2038 2072 0.615850 AGCAAAGGAGAGGTACCAGC 59.384 55.0 15.94 5.62 0.00 4.85 F
3589 3690 0.543277 TTTGCACCATGGGCACAAAA 59.457 45.0 22.74 14.26 41.75 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 1871 3.056107 GGCCTTCCCATTTTCAACCTAAC 60.056 47.826 0.00 0.00 0.0 2.34 R
2036 2070 3.746045 TGGAGTAAAACGAAGACAGCT 57.254 42.857 0.00 0.00 0.0 4.24 R
2038 2072 4.318831 GCACTTGGAGTAAAACGAAGACAG 60.319 45.833 0.00 0.00 0.0 3.51 R
3093 3189 0.034089 ATGCTAGTTTGGCCACCTCC 60.034 55.000 3.88 0.07 0.0 4.30 R
3951 4054 4.293494 TCTGCAGTCATAGAGAGGGAAAT 58.707 43.478 14.67 0.00 0.0 2.17 R
5101 5267 0.038892 CCACTGTTCACAATGCCAGC 60.039 55.000 0.00 0.00 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.851021 CGCGGCATCAGGTCAAACAA 61.851 55.000 0.00 0.00 0.00 2.83
67 68 1.735198 CAAGCACTGGCATTTGGCG 60.735 57.895 0.00 0.00 46.16 5.69
144 145 2.670934 CAGGGTGTGGAGCTGCAC 60.671 66.667 29.44 29.44 35.07 4.57
148 149 3.958860 GTGTGGAGCTGCACCCCT 61.959 66.667 32.10 0.00 0.00 4.79
154 155 2.203907 AGCTGCACCCCTGAGAGT 60.204 61.111 1.02 0.00 0.00 3.24
214 215 2.029964 GTCGCGAAGTTGGGGTCA 59.970 61.111 12.06 0.00 0.00 4.02
661 662 2.490685 GAGGAGAAGACCGCGACC 59.509 66.667 8.23 0.00 34.73 4.79
977 983 2.260434 CGCGAGGAGGGAAACGAA 59.740 61.111 0.00 0.00 34.27 3.85
978 984 1.373748 CGCGAGGAGGGAAACGAAA 60.374 57.895 0.00 0.00 34.27 3.46
980 986 1.623973 GCGAGGAGGGAAACGAAACG 61.624 60.000 0.00 0.00 0.00 3.60
981 987 0.038892 CGAGGAGGGAAACGAAACGA 60.039 55.000 0.00 0.00 0.00 3.85
982 988 1.711206 GAGGAGGGAAACGAAACGAG 58.289 55.000 0.00 0.00 0.00 4.18
984 990 1.000618 AGGAGGGAAACGAAACGAGAC 59.999 52.381 0.00 0.00 0.00 3.36
985 991 1.058404 GAGGGAAACGAAACGAGACG 58.942 55.000 0.00 0.00 0.00 4.18
986 992 0.319297 AGGGAAACGAAACGAGACGG 60.319 55.000 0.00 0.00 0.00 4.79
987 993 0.318955 GGGAAACGAAACGAGACGGA 60.319 55.000 0.00 0.00 0.00 4.69
988 994 1.490621 GGAAACGAAACGAGACGGAA 58.509 50.000 0.00 0.00 0.00 4.30
989 995 1.860326 GGAAACGAAACGAGACGGAAA 59.140 47.619 0.00 0.00 0.00 3.13
990 996 2.284952 GGAAACGAAACGAGACGGAAAA 59.715 45.455 0.00 0.00 0.00 2.29
991 997 3.529085 GAAACGAAACGAGACGGAAAAG 58.471 45.455 0.00 0.00 0.00 2.27
994 1000 1.396815 CGAAACGAGACGGAAAAGTGC 60.397 52.381 0.00 0.00 0.00 4.40
1002 1008 1.024579 ACGGAAAAGTGCGCTATGGG 61.025 55.000 9.73 0.00 43.33 4.00
1006 1012 0.811281 AAAAGTGCGCTATGGGCTTC 59.189 50.000 9.73 2.26 42.10 3.86
1035 1041 3.755628 GCCGCTCACGTGGTCCTA 61.756 66.667 17.00 0.00 42.91 2.94
1036 1042 3.077519 GCCGCTCACGTGGTCCTAT 62.078 63.158 17.00 0.00 42.91 2.57
1037 1043 1.065928 CCGCTCACGTGGTCCTATC 59.934 63.158 17.00 0.00 37.70 2.08
1038 1044 1.298413 CGCTCACGTGGTCCTATCG 60.298 63.158 17.00 0.00 33.53 2.92
1039 1045 1.589196 GCTCACGTGGTCCTATCGC 60.589 63.158 17.00 2.40 0.00 4.58
1041 1047 0.029567 CTCACGTGGTCCTATCGCTC 59.970 60.000 17.00 0.00 0.00 5.03
1042 1048 0.393944 TCACGTGGTCCTATCGCTCT 60.394 55.000 17.00 0.00 0.00 4.09
1043 1049 1.134310 TCACGTGGTCCTATCGCTCTA 60.134 52.381 17.00 0.00 0.00 2.43
1062 1072 4.823157 TCTATTCTATCTCGCGCTAGTCT 58.177 43.478 8.95 0.81 0.00 3.24
1086 1098 3.807538 TGTCTCTCGCCGTACGCC 61.808 66.667 10.49 0.00 43.23 5.68
1087 1099 3.507009 GTCTCTCGCCGTACGCCT 61.507 66.667 10.49 0.00 43.23 5.52
1089 1101 4.253257 CTCTCGCCGTACGCCTCC 62.253 72.222 10.49 0.00 43.23 4.30
1096 1108 3.823330 CGTACGCCTCCGCCTCTT 61.823 66.667 0.52 0.00 38.22 2.85
1098 1110 3.145551 TACGCCTCCGCCTCTTCC 61.146 66.667 0.00 0.00 38.22 3.46
1109 1121 2.510238 CTCTTCCCGCCTGCTTCG 60.510 66.667 0.00 0.00 0.00 3.79
1110 1122 4.760047 TCTTCCCGCCTGCTTCGC 62.760 66.667 0.00 0.00 0.00 4.70
1415 1430 4.320861 CGCCATTGTAAGTCACCAATTGAA 60.321 41.667 7.12 0.00 35.39 2.69
1420 1435 6.707440 TTGTAAGTCACCAATTGAACACAT 57.293 33.333 7.12 0.00 35.39 3.21
1548 1577 4.890088 TCGTGCACTGGTTTTTCTAGTAT 58.110 39.130 16.19 0.00 35.70 2.12
1551 1580 7.774134 TCGTGCACTGGTTTTTCTAGTATATA 58.226 34.615 16.19 0.00 35.70 0.86
1560 1589 7.011669 TGGTTTTTCTAGTATATAAAGCGTGCC 59.988 37.037 0.00 0.00 0.00 5.01
1576 1605 0.976073 TGCCTGTAGGACTGTAGGGC 60.976 60.000 1.17 0.00 37.39 5.19
1663 1692 9.482627 GTTGAAATGGTTAATATGTTTGGAACA 57.517 29.630 0.00 0.00 46.94 3.18
1780 1810 5.009110 TGGTTTCTATGTTTCGCAATGTGAA 59.991 36.000 4.98 4.98 0.00 3.18
1837 1871 3.248363 TGTGAGTTCGTTTCTCAATGCTG 59.752 43.478 8.05 0.00 42.42 4.41
2036 2070 1.271379 GCAAGCAAAGGAGAGGTACCA 60.271 52.381 15.94 0.00 0.00 3.25
2038 2072 0.615850 AGCAAAGGAGAGGTACCAGC 59.384 55.000 15.94 5.62 0.00 4.85
2052 2087 3.431233 GGTACCAGCTGTCTTCGTTTTAC 59.569 47.826 13.81 0.00 0.00 2.01
2056 2091 3.390135 CAGCTGTCTTCGTTTTACTCCA 58.610 45.455 5.25 0.00 0.00 3.86
2064 2099 3.462483 TCGTTTTACTCCAAGTGCAGA 57.538 42.857 0.00 0.00 0.00 4.26
2092 2127 6.977502 ACAACATGTCGATGATTGTTTTTCAA 59.022 30.769 0.00 0.00 33.62 2.69
2172 2236 5.828299 TTCTTTCAAACATCCGTGAAGTT 57.172 34.783 0.00 0.00 35.29 2.66
2261 2331 4.889409 TCTGGAAACTCAAACTTTGCATCT 59.111 37.500 0.00 0.00 29.78 2.90
2288 2358 3.434309 ACTAGCTGCATTCCCATGTTTT 58.566 40.909 1.02 0.00 32.28 2.43
2335 2405 4.922206 TGGTGTCCTCTTATTTTGCAGAT 58.078 39.130 0.00 0.00 0.00 2.90
2474 2545 1.391157 TTGGTCCTTGTTGTGCTGCC 61.391 55.000 0.00 0.00 0.00 4.85
2690 2761 7.665559 TGATCTTGAACAGGTAATATAATGGGC 59.334 37.037 0.00 0.00 0.00 5.36
3093 3189 4.586001 CCTGATAAAAATCCCCATGTCCAG 59.414 45.833 0.00 0.00 0.00 3.86
3458 3555 7.309438 GCTGTTGATCCTAACTTTCAAATCCTT 60.309 37.037 0.00 0.00 31.66 3.36
3578 3679 2.036217 CTGCCTTCATCTTTTTGCACCA 59.964 45.455 0.00 0.00 0.00 4.17
3589 3690 0.543277 TTTGCACCATGGGCACAAAA 59.457 45.000 22.74 14.26 41.75 2.44
3932 4035 6.648192 AGCTAGTTTTAGAGATGAAGCACAT 58.352 36.000 0.00 0.00 42.47 3.21
4046 4149 2.478514 TCCGATTCAATGTGTGACAACG 59.521 45.455 0.00 0.00 35.39 4.10
4122 4225 3.751479 AGGCAAGACAAAATTTGGGTC 57.249 42.857 10.71 12.89 34.12 4.46
4171 4274 4.068599 TCAATTGTTCATGTACTCGGCAA 58.931 39.130 5.13 0.00 0.00 4.52
4173 4276 2.535012 TGTTCATGTACTCGGCAACA 57.465 45.000 4.01 0.00 0.00 3.33
4224 4327 8.910666 TCATTTTTGTTTTATGTAACATCTGCG 58.089 29.630 0.00 0.00 37.81 5.18
4345 4451 8.750298 TGTAATCCCTTTTTGAAGTAACAAACA 58.250 29.630 0.00 0.00 39.08 2.83
4453 4573 7.504403 ACTCCAATATACTCCAACATCTGAAG 58.496 38.462 0.00 0.00 0.00 3.02
4483 4646 2.836667 ACCCCCTAAATGACTTCGGTA 58.163 47.619 0.00 0.00 0.00 4.02
4484 4647 3.183801 ACCCCCTAAATGACTTCGGTAA 58.816 45.455 0.00 0.00 0.00 2.85
4485 4648 3.784202 ACCCCCTAAATGACTTCGGTAAT 59.216 43.478 0.00 0.00 0.00 1.89
4486 4649 4.228895 ACCCCCTAAATGACTTCGGTAATT 59.771 41.667 0.00 0.00 30.58 1.40
4487 4650 5.429435 ACCCCCTAAATGACTTCGGTAATTA 59.571 40.000 0.00 0.00 29.29 1.40
4488 4651 5.761726 CCCCCTAAATGACTTCGGTAATTAC 59.238 44.000 7.09 7.09 29.29 1.89
4489 4652 6.408891 CCCCCTAAATGACTTCGGTAATTACT 60.409 42.308 15.05 0.00 29.29 2.24
4490 4653 6.704937 CCCCTAAATGACTTCGGTAATTACTC 59.295 42.308 15.05 5.37 29.29 2.59
4491 4654 6.704937 CCCTAAATGACTTCGGTAATTACTCC 59.295 42.308 15.05 0.00 29.29 3.85
4492 4655 7.270047 CCTAAATGACTTCGGTAATTACTCCA 58.730 38.462 15.05 5.41 29.29 3.86
4493 4656 7.767198 CCTAAATGACTTCGGTAATTACTCCAA 59.233 37.037 15.05 5.22 29.29 3.53
4494 4657 6.980051 AATGACTTCGGTAATTACTCCAAC 57.020 37.500 15.05 4.48 27.66 3.77
4495 4658 5.471556 TGACTTCGGTAATTACTCCAACA 57.528 39.130 15.05 6.68 0.00 3.33
4496 4659 6.045072 TGACTTCGGTAATTACTCCAACAT 57.955 37.500 15.05 0.00 0.00 2.71
4497 4660 6.103997 TGACTTCGGTAATTACTCCAACATC 58.896 40.000 15.05 5.92 0.00 3.06
4611 4777 7.822161 AAGGACAACATATGCTAATTATGCA 57.178 32.000 1.58 10.63 44.95 3.96
4613 4779 7.879070 AGGACAACATATGCTAATTATGCAAG 58.121 34.615 1.58 8.62 44.01 4.01
4623 4789 7.430992 TGCTAATTATGCAAGCAGAATAGAG 57.569 36.000 14.42 14.65 41.15 2.43
4624 4790 6.429078 TGCTAATTATGCAAGCAGAATAGAGG 59.571 38.462 14.42 7.19 41.15 3.69
4625 4791 5.702349 AATTATGCAAGCAGAATAGAGGC 57.298 39.130 14.42 0.00 36.94 4.70
4627 4793 0.620030 TGCAAGCAGAATAGAGGCCA 59.380 50.000 5.01 0.00 0.00 5.36
4628 4794 1.307097 GCAAGCAGAATAGAGGCCAG 58.693 55.000 5.01 0.00 0.00 4.85
4629 4795 1.407989 GCAAGCAGAATAGAGGCCAGT 60.408 52.381 5.01 0.00 0.00 4.00
4630 4796 2.943199 GCAAGCAGAATAGAGGCCAGTT 60.943 50.000 5.01 0.00 0.00 3.16
4631 4797 2.941720 CAAGCAGAATAGAGGCCAGTTC 59.058 50.000 5.01 3.29 0.00 3.01
4632 4798 2.476199 AGCAGAATAGAGGCCAGTTCT 58.524 47.619 5.01 5.81 0.00 3.01
4633 4799 2.843113 AGCAGAATAGAGGCCAGTTCTT 59.157 45.455 5.01 0.00 0.00 2.52
4634 4800 3.265479 AGCAGAATAGAGGCCAGTTCTTT 59.735 43.478 5.01 0.00 0.00 2.52
4635 4801 4.013050 GCAGAATAGAGGCCAGTTCTTTT 58.987 43.478 5.01 0.07 0.00 2.27
4636 4802 4.095632 GCAGAATAGAGGCCAGTTCTTTTC 59.904 45.833 5.01 10.30 34.71 2.29
4637 4803 4.331168 CAGAATAGAGGCCAGTTCTTTTCG 59.669 45.833 5.01 3.86 37.56 3.46
4638 4804 2.762535 TAGAGGCCAGTTCTTTTCGG 57.237 50.000 5.01 0.00 0.00 4.30
4639 4805 0.606673 AGAGGCCAGTTCTTTTCGGC 60.607 55.000 5.01 0.00 44.10 5.54
4640 4806 1.912371 GAGGCCAGTTCTTTTCGGCG 61.912 60.000 5.01 0.00 45.85 6.46
4641 4807 1.964373 GGCCAGTTCTTTTCGGCGA 60.964 57.895 4.99 4.99 45.85 5.54
4642 4808 1.305930 GGCCAGTTCTTTTCGGCGAT 61.306 55.000 11.76 0.00 45.85 4.58
4643 4809 0.521735 GCCAGTTCTTTTCGGCGATT 59.478 50.000 11.76 0.00 34.26 3.34
4644 4810 1.465856 GCCAGTTCTTTTCGGCGATTC 60.466 52.381 11.76 0.00 34.26 2.52
4645 4811 2.076863 CCAGTTCTTTTCGGCGATTCT 58.923 47.619 11.76 0.35 0.00 2.40
4646 4812 2.094417 CCAGTTCTTTTCGGCGATTCTC 59.906 50.000 11.76 0.00 0.00 2.87
4647 4813 2.094417 CAGTTCTTTTCGGCGATTCTCC 59.906 50.000 11.76 0.00 0.00 3.71
4648 4814 1.397343 GTTCTTTTCGGCGATTCTCCC 59.603 52.381 11.76 0.00 0.00 4.30
4649 4815 0.611200 TCTTTTCGGCGATTCTCCCA 59.389 50.000 11.76 0.00 0.00 4.37
4650 4816 1.009829 CTTTTCGGCGATTCTCCCAG 58.990 55.000 11.76 0.00 0.00 4.45
4651 4817 0.611200 TTTTCGGCGATTCTCCCAGA 59.389 50.000 11.76 0.00 0.00 3.86
4652 4818 0.611200 TTTCGGCGATTCTCCCAGAA 59.389 50.000 11.76 0.00 38.78 3.02
4653 4819 0.830648 TTCGGCGATTCTCCCAGAAT 59.169 50.000 11.76 0.00 46.84 2.40
4659 4825 1.839894 ATTCTCCCAGAATCGCCCC 59.160 57.895 0.00 0.00 40.75 5.80
4660 4826 1.709994 ATTCTCCCAGAATCGCCCCC 61.710 60.000 0.00 0.00 40.75 5.40
4674 4840 3.640761 CCCCCTCCTCAGCTTCTC 58.359 66.667 0.00 0.00 0.00 2.87
4675 4841 2.069430 CCCCCTCCTCAGCTTCTCC 61.069 68.421 0.00 0.00 0.00 3.71
4676 4842 2.069430 CCCCTCCTCAGCTTCTCCC 61.069 68.421 0.00 0.00 0.00 4.30
4677 4843 1.306482 CCCTCCTCAGCTTCTCCCA 60.306 63.158 0.00 0.00 0.00 4.37
4678 4844 1.336632 CCCTCCTCAGCTTCTCCCAG 61.337 65.000 0.00 0.00 0.00 4.45
4679 4845 0.325110 CCTCCTCAGCTTCTCCCAGA 60.325 60.000 0.00 0.00 0.00 3.86
4680 4846 1.566211 CTCCTCAGCTTCTCCCAGAA 58.434 55.000 0.00 0.00 32.50 3.02
4681 4847 2.117865 CTCCTCAGCTTCTCCCAGAAT 58.882 52.381 0.00 0.00 33.13 2.40
4682 4848 2.102925 CTCCTCAGCTTCTCCCAGAATC 59.897 54.545 0.00 0.00 33.13 2.52
4683 4849 1.202510 CCTCAGCTTCTCCCAGAATCG 60.203 57.143 0.00 0.00 33.13 3.34
4684 4850 0.176680 TCAGCTTCTCCCAGAATCGC 59.823 55.000 0.00 0.00 33.13 4.58
4685 4851 0.813210 CAGCTTCTCCCAGAATCGCC 60.813 60.000 0.00 0.00 33.13 5.54
4686 4852 1.221840 GCTTCTCCCAGAATCGCCA 59.778 57.895 0.00 0.00 33.13 5.69
4687 4853 1.092345 GCTTCTCCCAGAATCGCCAC 61.092 60.000 0.00 0.00 33.13 5.01
4688 4854 0.539051 CTTCTCCCAGAATCGCCACT 59.461 55.000 0.00 0.00 33.13 4.00
4689 4855 0.537188 TTCTCCCAGAATCGCCACTC 59.463 55.000 0.00 0.00 0.00 3.51
4690 4856 1.144936 CTCCCAGAATCGCCACTCC 59.855 63.158 0.00 0.00 0.00 3.85
4691 4857 1.612146 TCCCAGAATCGCCACTCCA 60.612 57.895 0.00 0.00 0.00 3.86
4692 4858 0.982852 TCCCAGAATCGCCACTCCAT 60.983 55.000 0.00 0.00 0.00 3.41
4693 4859 0.758734 CCCAGAATCGCCACTCCATA 59.241 55.000 0.00 0.00 0.00 2.74
4694 4860 1.349026 CCCAGAATCGCCACTCCATAT 59.651 52.381 0.00 0.00 0.00 1.78
4695 4861 2.224621 CCCAGAATCGCCACTCCATATT 60.225 50.000 0.00 0.00 0.00 1.28
4696 4862 3.480470 CCAGAATCGCCACTCCATATTT 58.520 45.455 0.00 0.00 0.00 1.40
4697 4863 3.885297 CCAGAATCGCCACTCCATATTTT 59.115 43.478 0.00 0.00 0.00 1.82
4698 4864 4.339247 CCAGAATCGCCACTCCATATTTTT 59.661 41.667 0.00 0.00 0.00 1.94
4768 4934 8.469309 AAAACATATGGAGTGATTATTCTGGG 57.531 34.615 7.80 0.00 0.00 4.45
4769 4935 7.392766 AACATATGGAGTGATTATTCTGGGA 57.607 36.000 7.80 0.00 0.00 4.37
4770 4936 7.013823 ACATATGGAGTGATTATTCTGGGAG 57.986 40.000 7.80 0.00 0.00 4.30
4771 4937 6.789457 ACATATGGAGTGATTATTCTGGGAGA 59.211 38.462 7.80 0.00 0.00 3.71
4772 4938 7.293299 ACATATGGAGTGATTATTCTGGGAGAA 59.707 37.037 7.80 0.00 38.78 2.87
4773 4939 5.620738 TGGAGTGATTATTCTGGGAGAAG 57.379 43.478 0.00 0.00 37.69 2.85
4774 4940 4.141620 TGGAGTGATTATTCTGGGAGAAGC 60.142 45.833 0.00 0.00 37.69 3.86
4775 4941 4.102367 GGAGTGATTATTCTGGGAGAAGCT 59.898 45.833 0.00 0.00 37.69 3.74
4776 4942 5.305644 GGAGTGATTATTCTGGGAGAAGCTA 59.694 44.000 0.00 0.00 37.69 3.32
4777 4943 6.418057 AGTGATTATTCTGGGAGAAGCTAG 57.582 41.667 0.00 0.00 37.69 3.42
4778 4944 5.306678 AGTGATTATTCTGGGAGAAGCTAGG 59.693 44.000 0.00 0.00 37.69 3.02
4779 4945 4.594920 TGATTATTCTGGGAGAAGCTAGGG 59.405 45.833 0.00 0.00 37.69 3.53
4780 4946 2.877154 ATTCTGGGAGAAGCTAGGGA 57.123 50.000 0.00 0.00 37.69 4.20
4781 4947 2.166907 TTCTGGGAGAAGCTAGGGAG 57.833 55.000 0.00 0.00 29.50 4.30
4782 4948 0.263172 TCTGGGAGAAGCTAGGGAGG 59.737 60.000 0.00 0.00 0.00 4.30
4783 4949 0.762461 CTGGGAGAAGCTAGGGAGGG 60.762 65.000 0.00 0.00 0.00 4.30
4784 4950 1.460497 GGGAGAAGCTAGGGAGGGG 60.460 68.421 0.00 0.00 0.00 4.79
4785 4951 1.460497 GGAGAAGCTAGGGAGGGGG 60.460 68.421 0.00 0.00 0.00 5.40
4809 4975 3.644966 ATTCTGGTAGAATCGCCCAAA 57.355 42.857 0.00 0.00 40.75 3.28
4810 4976 3.426787 TTCTGGTAGAATCGCCCAAAA 57.573 42.857 0.00 0.00 0.00 2.44
4811 4977 2.985896 TCTGGTAGAATCGCCCAAAAG 58.014 47.619 0.00 0.00 0.00 2.27
4812 4978 2.569853 TCTGGTAGAATCGCCCAAAAGA 59.430 45.455 0.00 0.00 0.00 2.52
4813 4979 3.008594 TCTGGTAGAATCGCCCAAAAGAA 59.991 43.478 0.00 0.00 0.00 2.52
4814 4980 3.078837 TGGTAGAATCGCCCAAAAGAAC 58.921 45.455 0.00 0.00 0.00 3.01
4815 4981 3.244770 TGGTAGAATCGCCCAAAAGAACT 60.245 43.478 0.00 0.00 0.00 3.01
4816 4982 3.127030 GGTAGAATCGCCCAAAAGAACTG 59.873 47.826 0.00 0.00 0.00 3.16
4817 4983 2.162681 AGAATCGCCCAAAAGAACTGG 58.837 47.619 0.00 0.00 0.00 4.00
4818 4984 0.603065 AATCGCCCAAAAGAACTGGC 59.397 50.000 0.00 0.00 40.54 4.85
4819 4985 1.250840 ATCGCCCAAAAGAACTGGCC 61.251 55.000 0.00 0.00 40.87 5.36
4820 4986 2.931068 CGCCCAAAAGAACTGGCCC 61.931 63.158 0.00 0.00 40.87 5.80
4821 4987 1.533994 GCCCAAAAGAACTGGCCCT 60.534 57.895 0.00 0.00 37.94 5.19
4822 4988 0.251608 GCCCAAAAGAACTGGCCCTA 60.252 55.000 0.00 0.00 37.94 3.53
4823 4989 1.839424 CCCAAAAGAACTGGCCCTAG 58.161 55.000 0.00 0.00 32.10 3.02
4824 4990 1.354368 CCCAAAAGAACTGGCCCTAGA 59.646 52.381 0.00 0.00 32.10 2.43
4825 4991 2.024941 CCCAAAAGAACTGGCCCTAGAT 60.025 50.000 0.00 0.00 32.10 1.98
4826 4992 3.202151 CCCAAAAGAACTGGCCCTAGATA 59.798 47.826 0.00 0.00 32.10 1.98
4827 4993 4.141158 CCCAAAAGAACTGGCCCTAGATAT 60.141 45.833 0.00 0.00 32.10 1.63
4828 4994 5.449553 CCAAAAGAACTGGCCCTAGATATT 58.550 41.667 0.00 0.00 0.00 1.28
4831 4997 7.260603 CAAAAGAACTGGCCCTAGATATTTTG 58.739 38.462 14.52 14.52 0.00 2.44
4839 5005 6.601332 TGGCCCTAGATATTTTGGTAAAGAG 58.399 40.000 0.00 0.00 0.00 2.85
4873 5039 7.931015 TCCATTTTGGAGTACCTCATACTAT 57.069 36.000 0.00 0.00 44.64 2.12
4875 5041 7.016268 TCCATTTTGGAGTACCTCATACTATCC 59.984 40.741 0.00 0.00 44.64 2.59
4876 5042 7.202093 CCATTTTGGAGTACCTCATACTATCCA 60.202 40.741 0.00 0.00 44.64 3.41
4877 5043 7.743116 TTTTGGAGTACCTCATACTATCCAA 57.257 36.000 3.94 3.94 44.64 3.53
4878 5044 6.978674 TTGGAGTACCTCATACTATCCAAG 57.021 41.667 3.94 0.00 44.64 3.61
4879 5045 6.027025 TGGAGTACCTCATACTATCCAAGT 57.973 41.667 0.00 0.00 44.64 3.16
4880 5046 7.157947 TGGAGTACCTCATACTATCCAAGTA 57.842 40.000 0.00 0.00 44.64 2.24
4881 5047 7.002879 TGGAGTACCTCATACTATCCAAGTAC 58.997 42.308 0.00 0.00 44.64 2.73
4882 5048 7.147177 TGGAGTACCTCATACTATCCAAGTACT 60.147 40.741 0.00 0.00 44.64 2.73
4883 5049 8.326680 GAGTACCTCATACTATCCAAGTACTC 57.673 42.308 10.24 10.24 44.64 2.59
4884 5050 7.232910 AGTACCTCATACTATCCAAGTACTCC 58.767 42.308 0.00 0.00 43.47 3.85
4885 5051 5.395611 ACCTCATACTATCCAAGTACTCCC 58.604 45.833 0.00 0.00 43.47 4.30
4886 5052 5.136392 ACCTCATACTATCCAAGTACTCCCT 59.864 44.000 0.00 0.00 43.47 4.20
4887 5053 5.712917 CCTCATACTATCCAAGTACTCCCTC 59.287 48.000 0.00 0.00 43.47 4.30
4888 5054 5.642165 TCATACTATCCAAGTACTCCCTCC 58.358 45.833 0.00 0.00 43.47 4.30
4889 5055 2.946785 ACTATCCAAGTACTCCCTCCG 58.053 52.381 0.00 0.00 36.36 4.63
4890 5056 2.244252 ACTATCCAAGTACTCCCTCCGT 59.756 50.000 0.00 0.00 36.36 4.69
4891 5057 3.461085 ACTATCCAAGTACTCCCTCCGTA 59.539 47.826 0.00 0.00 36.36 4.02
4892 5058 3.614568 ATCCAAGTACTCCCTCCGTAT 57.385 47.619 0.00 0.00 0.00 3.06
4893 5059 2.941480 TCCAAGTACTCCCTCCGTATC 58.059 52.381 0.00 0.00 0.00 2.24
4894 5060 2.242965 TCCAAGTACTCCCTCCGTATCA 59.757 50.000 0.00 0.00 0.00 2.15
4895 5061 3.028850 CCAAGTACTCCCTCCGTATCAA 58.971 50.000 0.00 0.00 0.00 2.57
4896 5062 3.449737 CCAAGTACTCCCTCCGTATCAAA 59.550 47.826 0.00 0.00 0.00 2.69
4897 5063 4.081309 CCAAGTACTCCCTCCGTATCAAAA 60.081 45.833 0.00 0.00 0.00 2.44
4898 5064 5.396436 CCAAGTACTCCCTCCGTATCAAAAT 60.396 44.000 0.00 0.00 0.00 1.82
4899 5065 5.277857 AGTACTCCCTCCGTATCAAAATG 57.722 43.478 0.00 0.00 0.00 2.32
4900 5066 2.919228 ACTCCCTCCGTATCAAAATGC 58.081 47.619 0.00 0.00 0.00 3.56
4901 5067 2.238646 ACTCCCTCCGTATCAAAATGCA 59.761 45.455 0.00 0.00 0.00 3.96
4902 5068 3.278574 CTCCCTCCGTATCAAAATGCAA 58.721 45.455 0.00 0.00 0.00 4.08
4903 5069 3.278574 TCCCTCCGTATCAAAATGCAAG 58.721 45.455 0.00 0.00 0.00 4.01
4904 5070 3.054728 TCCCTCCGTATCAAAATGCAAGA 60.055 43.478 0.00 0.00 0.00 3.02
4905 5071 3.065371 CCCTCCGTATCAAAATGCAAGAC 59.935 47.826 0.00 0.00 0.00 3.01
4906 5072 3.242413 CCTCCGTATCAAAATGCAAGACG 60.242 47.826 0.00 0.00 0.00 4.18
4907 5073 3.331150 TCCGTATCAAAATGCAAGACGT 58.669 40.909 0.00 0.00 0.00 4.34
4908 5074 3.749088 TCCGTATCAAAATGCAAGACGTT 59.251 39.130 0.00 0.00 0.00 3.99
4909 5075 4.214545 TCCGTATCAAAATGCAAGACGTTT 59.785 37.500 0.00 0.00 39.22 3.60
4910 5076 4.915085 CCGTATCAAAATGCAAGACGTTTT 59.085 37.500 0.00 0.00 46.19 2.43
4911 5077 5.059221 CCGTATCAAAATGCAAGACGTTTTC 59.941 40.000 0.00 0.00 43.99 2.29
4912 5078 5.851177 CGTATCAAAATGCAAGACGTTTTCT 59.149 36.000 0.00 0.00 43.99 2.52
4913 5079 6.359617 CGTATCAAAATGCAAGACGTTTTCTT 59.640 34.615 0.00 0.00 43.99 2.52
4914 5080 7.532546 CGTATCAAAATGCAAGACGTTTTCTTA 59.467 33.333 0.00 0.00 43.99 2.10
4915 5081 7.623268 ATCAAAATGCAAGACGTTTTCTTAC 57.377 32.000 0.00 0.00 43.99 2.34
4916 5082 6.556212 TCAAAATGCAAGACGTTTTCTTACA 58.444 32.000 0.00 0.00 43.99 2.41
4917 5083 6.470877 TCAAAATGCAAGACGTTTTCTTACAC 59.529 34.615 0.00 0.00 43.99 2.90
4918 5084 5.751243 AATGCAAGACGTTTTCTTACACT 57.249 34.783 0.00 0.00 43.23 3.55
4919 5085 6.854496 AATGCAAGACGTTTTCTTACACTA 57.146 33.333 0.00 0.00 43.23 2.74
4920 5086 7.435068 AATGCAAGACGTTTTCTTACACTAT 57.565 32.000 0.00 0.00 43.23 2.12
4921 5087 6.223138 TGCAAGACGTTTTCTTACACTATG 57.777 37.500 0.00 0.00 43.23 2.23
4922 5088 5.986741 TGCAAGACGTTTTCTTACACTATGA 59.013 36.000 0.00 0.00 43.23 2.15
4923 5089 6.649141 TGCAAGACGTTTTCTTACACTATGAT 59.351 34.615 0.00 0.00 43.23 2.45
4924 5090 7.815549 TGCAAGACGTTTTCTTACACTATGATA 59.184 33.333 0.00 0.00 43.23 2.15
4925 5091 8.653338 GCAAGACGTTTTCTTACACTATGATAA 58.347 33.333 0.00 0.00 43.23 1.75
4930 5096 9.367444 ACGTTTTCTTACACTATGATAAAGAGG 57.633 33.333 0.00 0.00 0.00 3.69
4931 5097 9.582431 CGTTTTCTTACACTATGATAAAGAGGA 57.418 33.333 0.00 0.00 0.00 3.71
4936 5102 8.696374 TCTTACACTATGATAAAGAGGAAGTGG 58.304 37.037 0.00 0.00 37.71 4.00
4946 5112 9.434275 TGATAAAGAGGAAGTGGAGTATATTCA 57.566 33.333 0.00 0.00 0.00 2.57
4974 5140 6.418101 AGAGATAAATTGGTACAGCACACAT 58.582 36.000 0.00 0.00 42.39 3.21
4977 5143 8.158169 AGATAAATTGGTACAGCACACATATG 57.842 34.615 0.00 0.00 42.39 1.78
4990 5156 9.428097 ACAGCACACATATGTATATAAGTGATG 57.572 33.333 25.85 25.85 42.40 3.07
5023 5189 3.206150 GGAACACATACACCATAGCAGG 58.794 50.000 0.00 0.00 0.00 4.85
5073 5239 0.830648 CGGGCCTAGGTGAGAAATCA 59.169 55.000 11.31 0.00 0.00 2.57
5104 5270 5.591643 TTTTCTCTAACGCTTAGTTGCTG 57.408 39.130 5.18 0.00 44.01 4.41
5105 5271 3.232213 TCTCTAACGCTTAGTTGCTGG 57.768 47.619 5.18 0.00 44.01 4.85
5106 5272 1.661112 CTCTAACGCTTAGTTGCTGGC 59.339 52.381 5.18 0.00 44.01 4.85
5107 5273 1.001520 TCTAACGCTTAGTTGCTGGCA 59.998 47.619 0.00 0.00 44.01 4.92
5108 5274 2.009774 CTAACGCTTAGTTGCTGGCAT 58.990 47.619 0.00 0.00 44.01 4.40
5109 5275 1.247567 AACGCTTAGTTGCTGGCATT 58.752 45.000 0.00 0.00 42.39 3.56
5110 5276 0.523072 ACGCTTAGTTGCTGGCATTG 59.477 50.000 0.00 0.00 0.00 2.82
5111 5277 0.523072 CGCTTAGTTGCTGGCATTGT 59.477 50.000 0.00 0.00 0.00 2.71
5112 5278 1.730121 CGCTTAGTTGCTGGCATTGTG 60.730 52.381 0.00 0.00 0.00 3.33
5113 5279 1.541147 GCTTAGTTGCTGGCATTGTGA 59.459 47.619 0.00 0.00 0.00 3.58
5114 5280 2.030007 GCTTAGTTGCTGGCATTGTGAA 60.030 45.455 0.00 0.00 0.00 3.18
5115 5281 3.568538 CTTAGTTGCTGGCATTGTGAAC 58.431 45.455 0.00 0.00 0.00 3.18
5116 5282 1.401761 AGTTGCTGGCATTGTGAACA 58.598 45.000 0.00 0.00 0.00 3.18
5117 5283 1.338973 AGTTGCTGGCATTGTGAACAG 59.661 47.619 0.00 0.00 0.00 3.16
5118 5284 1.067516 GTTGCTGGCATTGTGAACAGT 59.932 47.619 0.00 0.00 33.62 3.55
5119 5285 0.669619 TGCTGGCATTGTGAACAGTG 59.330 50.000 1.85 1.85 36.76 3.66
5120 5286 0.038892 GCTGGCATTGTGAACAGTGG 60.039 55.000 7.88 0.00 34.62 4.00
5122 5288 1.081242 GGCATTGTGAACAGTGGCG 60.081 57.895 14.98 0.00 45.79 5.69
5123 5289 1.081242 GCATTGTGAACAGTGGCGG 60.081 57.895 7.88 0.00 34.62 6.13
5124 5290 1.514678 GCATTGTGAACAGTGGCGGA 61.515 55.000 7.88 0.00 34.62 5.54
5125 5291 0.518636 CATTGTGAACAGTGGCGGAG 59.481 55.000 0.00 0.00 30.99 4.63
5126 5292 0.396435 ATTGTGAACAGTGGCGGAGA 59.604 50.000 0.00 0.00 0.00 3.71
5127 5293 0.531974 TTGTGAACAGTGGCGGAGAC 60.532 55.000 0.00 0.00 0.00 3.36
5138 5304 4.087892 CGGAGACAGGGGTGCCAG 62.088 72.222 0.00 0.00 0.00 4.85
5139 5305 4.416738 GGAGACAGGGGTGCCAGC 62.417 72.222 0.00 0.00 0.00 4.85
5140 5306 3.640407 GAGACAGGGGTGCCAGCA 61.640 66.667 0.00 0.00 0.00 4.41
5141 5307 3.909086 GAGACAGGGGTGCCAGCAC 62.909 68.421 14.39 14.39 45.49 4.40
5157 5323 4.342086 ACGGACCCTGGCCCCTAA 62.342 66.667 0.00 0.00 0.00 2.69
5158 5324 3.793888 CGGACCCTGGCCCCTAAC 61.794 72.222 0.00 0.00 0.00 2.34
5159 5325 2.612746 GGACCCTGGCCCCTAACA 60.613 66.667 0.00 0.00 0.00 2.41
5160 5326 2.235761 GGACCCTGGCCCCTAACAA 61.236 63.158 0.00 0.00 0.00 2.83
5161 5327 1.001269 GACCCTGGCCCCTAACAAC 60.001 63.158 0.00 0.00 0.00 3.32
5162 5328 1.776710 ACCCTGGCCCCTAACAACA 60.777 57.895 0.00 0.00 0.00 3.33
5163 5329 1.146544 ACCCTGGCCCCTAACAACAT 61.147 55.000 0.00 0.00 0.00 2.71
5164 5330 0.684153 CCCTGGCCCCTAACAACATG 60.684 60.000 0.00 0.00 0.00 3.21
5165 5331 0.331278 CCTGGCCCCTAACAACATGA 59.669 55.000 0.00 0.00 0.00 3.07
5166 5332 1.272425 CCTGGCCCCTAACAACATGAA 60.272 52.381 0.00 0.00 0.00 2.57
5167 5333 2.624029 CCTGGCCCCTAACAACATGAAT 60.624 50.000 0.00 0.00 0.00 2.57
5168 5334 3.099141 CTGGCCCCTAACAACATGAATT 58.901 45.455 0.00 0.00 0.00 2.17
5169 5335 3.515104 CTGGCCCCTAACAACATGAATTT 59.485 43.478 0.00 0.00 0.00 1.82
5170 5336 4.678256 TGGCCCCTAACAACATGAATTTA 58.322 39.130 0.00 0.00 0.00 1.40
5171 5337 4.464597 TGGCCCCTAACAACATGAATTTAC 59.535 41.667 0.00 0.00 0.00 2.01
5172 5338 4.709886 GGCCCCTAACAACATGAATTTACT 59.290 41.667 0.00 0.00 0.00 2.24
5173 5339 5.889289 GGCCCCTAACAACATGAATTTACTA 59.111 40.000 0.00 0.00 0.00 1.82
5174 5340 6.183360 GGCCCCTAACAACATGAATTTACTAC 60.183 42.308 0.00 0.00 0.00 2.73
5175 5341 6.602009 GCCCCTAACAACATGAATTTACTACT 59.398 38.462 0.00 0.00 0.00 2.57
5176 5342 7.771826 GCCCCTAACAACATGAATTTACTACTA 59.228 37.037 0.00 0.00 0.00 1.82
5177 5343 9.675464 CCCCTAACAACATGAATTTACTACTAA 57.325 33.333 0.00 0.00 0.00 2.24
5199 5365 9.787435 ACTAAATTACTGGTGAATAGTGTTGAA 57.213 29.630 0.00 0.00 0.00 2.69
5207 5373 9.520515 ACTGGTGAATAGTGTTGAATTAGAATT 57.479 29.630 0.00 0.00 0.00 2.17
5247 5413 9.822185 AAACATCTATTTTTCTATGAATTGGCC 57.178 29.630 0.00 0.00 0.00 5.36
5248 5414 7.955918 ACATCTATTTTTCTATGAATTGGCCC 58.044 34.615 0.00 0.00 0.00 5.80
5249 5415 7.786464 ACATCTATTTTTCTATGAATTGGCCCT 59.214 33.333 0.00 0.00 0.00 5.19
5250 5416 7.823745 TCTATTTTTCTATGAATTGGCCCTC 57.176 36.000 0.00 0.00 0.00 4.30
5251 5417 5.876651 ATTTTTCTATGAATTGGCCCTCC 57.123 39.130 0.00 0.00 0.00 4.30
5252 5418 3.312736 TTTCTATGAATTGGCCCTCCC 57.687 47.619 0.00 0.00 0.00 4.30
5253 5419 1.149101 TCTATGAATTGGCCCTCCCC 58.851 55.000 0.00 0.00 0.00 4.81
5254 5420 0.852842 CTATGAATTGGCCCTCCCCA 59.147 55.000 0.00 0.00 0.00 4.96
5256 5422 0.325577 ATGAATTGGCCCTCCCCAAC 60.326 55.000 0.00 0.00 46.85 3.77
5257 5423 1.685765 GAATTGGCCCTCCCCAACC 60.686 63.158 0.00 0.00 46.85 3.77
5258 5424 2.168272 GAATTGGCCCTCCCCAACCT 62.168 60.000 0.00 0.00 46.85 3.50
5259 5425 0.853586 AATTGGCCCTCCCCAACCTA 60.854 55.000 0.00 0.00 46.85 3.08
5260 5426 0.630478 ATTGGCCCTCCCCAACCTAT 60.630 55.000 0.00 0.00 46.85 2.57
5261 5427 0.853586 TTGGCCCTCCCCAACCTATT 60.854 55.000 0.00 0.00 39.85 1.73
5262 5428 0.853586 TGGCCCTCCCCAACCTATTT 60.854 55.000 0.00 0.00 30.32 1.40
5263 5429 0.106167 GGCCCTCCCCAACCTATTTC 60.106 60.000 0.00 0.00 0.00 2.17
5264 5430 0.629058 GCCCTCCCCAACCTATTTCA 59.371 55.000 0.00 0.00 0.00 2.69
5265 5431 1.410224 GCCCTCCCCAACCTATTTCAG 60.410 57.143 0.00 0.00 0.00 3.02
5266 5432 1.923148 CCCTCCCCAACCTATTTCAGT 59.077 52.381 0.00 0.00 0.00 3.41
5267 5433 2.357154 CCCTCCCCAACCTATTTCAGTG 60.357 54.545 0.00 0.00 0.00 3.66
5268 5434 2.357154 CCTCCCCAACCTATTTCAGTGG 60.357 54.545 0.00 0.00 0.00 4.00
5269 5435 1.005450 TCCCCAACCTATTTCAGTGGC 59.995 52.381 0.00 0.00 0.00 5.01
5270 5436 1.272425 CCCCAACCTATTTCAGTGGCA 60.272 52.381 0.00 0.00 0.00 4.92
5271 5437 1.818674 CCCAACCTATTTCAGTGGCAC 59.181 52.381 10.29 10.29 0.00 5.01
5272 5438 2.555227 CCCAACCTATTTCAGTGGCACT 60.555 50.000 15.88 15.88 0.00 4.40
5273 5439 3.157087 CCAACCTATTTCAGTGGCACTT 58.843 45.455 19.43 6.05 0.00 3.16
5274 5440 3.057315 CCAACCTATTTCAGTGGCACTTG 60.057 47.826 19.43 13.61 0.00 3.16
5275 5441 2.162681 ACCTATTTCAGTGGCACTTGC 58.837 47.619 19.43 0.00 41.14 4.01
5302 5468 4.406648 CCCCCTAATCCAATTTTTCTGC 57.593 45.455 0.00 0.00 0.00 4.26
5303 5469 3.134623 CCCCCTAATCCAATTTTTCTGCC 59.865 47.826 0.00 0.00 0.00 4.85
5304 5470 4.033009 CCCCTAATCCAATTTTTCTGCCT 58.967 43.478 0.00 0.00 0.00 4.75
5305 5471 4.100035 CCCCTAATCCAATTTTTCTGCCTC 59.900 45.833 0.00 0.00 0.00 4.70
5306 5472 4.100035 CCCTAATCCAATTTTTCTGCCTCC 59.900 45.833 0.00 0.00 0.00 4.30
5307 5473 3.874392 AATCCAATTTTTCTGCCTCCG 57.126 42.857 0.00 0.00 0.00 4.63
5308 5474 0.887933 TCCAATTTTTCTGCCTCCGC 59.112 50.000 0.00 0.00 0.00 5.54
5309 5475 0.108662 CCAATTTTTCTGCCTCCGCC 60.109 55.000 0.00 0.00 0.00 6.13
5310 5476 0.602562 CAATTTTTCTGCCTCCGCCA 59.397 50.000 0.00 0.00 0.00 5.69
5311 5477 0.603065 AATTTTTCTGCCTCCGCCAC 59.397 50.000 0.00 0.00 0.00 5.01
5312 5478 0.251341 ATTTTTCTGCCTCCGCCACT 60.251 50.000 0.00 0.00 0.00 4.00
5313 5479 1.172180 TTTTTCTGCCTCCGCCACTG 61.172 55.000 0.00 0.00 0.00 3.66
5314 5480 2.050836 TTTTCTGCCTCCGCCACTGA 62.051 55.000 0.00 0.00 0.00 3.41
5315 5481 1.841302 TTTCTGCCTCCGCCACTGAT 61.841 55.000 0.00 0.00 0.00 2.90
5316 5482 1.841302 TTCTGCCTCCGCCACTGATT 61.841 55.000 0.00 0.00 0.00 2.57
5317 5483 2.046023 TGCCTCCGCCACTGATTG 60.046 61.111 0.00 0.00 0.00 2.67
5318 5484 2.045926 GCCTCCGCCACTGATTGT 60.046 61.111 0.00 0.00 0.00 2.71
5319 5485 2.401766 GCCTCCGCCACTGATTGTG 61.402 63.158 0.00 0.00 45.80 3.33
5331 5497 4.298103 ACTGATTGTGAATGCCTCTTCT 57.702 40.909 0.00 0.00 0.00 2.85
5332 5498 4.260170 ACTGATTGTGAATGCCTCTTCTC 58.740 43.478 0.00 0.00 0.00 2.87
5333 5499 4.259356 CTGATTGTGAATGCCTCTTCTCA 58.741 43.478 0.00 0.00 0.00 3.27
5334 5500 4.654915 TGATTGTGAATGCCTCTTCTCAA 58.345 39.130 9.31 9.31 40.70 3.02
5335 5501 4.698780 TGATTGTGAATGCCTCTTCTCAAG 59.301 41.667 11.39 0.00 40.14 3.02
5336 5502 4.356405 TTGTGAATGCCTCTTCTCAAGA 57.644 40.909 4.93 0.00 35.09 3.02
5350 5516 7.718334 TCTTCTCAAGAGTGTGATAATACCA 57.282 36.000 0.00 0.00 32.71 3.25
5351 5517 7.548097 TCTTCTCAAGAGTGTGATAATACCAC 58.452 38.462 0.00 0.00 32.71 4.16
5352 5518 6.850752 TCTCAAGAGTGTGATAATACCACA 57.149 37.500 0.00 0.00 41.68 4.17
5353 5519 7.423844 TCTCAAGAGTGTGATAATACCACAT 57.576 36.000 0.00 0.00 45.00 3.21
5354 5520 7.851228 TCTCAAGAGTGTGATAATACCACATT 58.149 34.615 0.00 0.00 45.00 2.71
5355 5521 7.765819 TCTCAAGAGTGTGATAATACCACATTG 59.234 37.037 0.00 0.00 45.00 2.82
5356 5522 7.619965 TCAAGAGTGTGATAATACCACATTGA 58.380 34.615 0.00 0.00 45.00 2.57
5357 5523 8.267183 TCAAGAGTGTGATAATACCACATTGAT 58.733 33.333 0.00 0.00 45.00 2.57
5358 5524 8.896744 CAAGAGTGTGATAATACCACATTGATT 58.103 33.333 0.00 0.00 45.00 2.57
5359 5525 9.466497 AAGAGTGTGATAATACCACATTGATTT 57.534 29.630 0.00 0.00 45.00 2.17
5360 5526 8.896744 AGAGTGTGATAATACCACATTGATTTG 58.103 33.333 0.00 0.00 45.00 2.32
5361 5527 8.806429 AGTGTGATAATACCACATTGATTTGA 57.194 30.769 0.00 0.00 45.00 2.69
5362 5528 9.412460 AGTGTGATAATACCACATTGATTTGAT 57.588 29.630 0.00 0.00 45.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.240945 GGTTGTTTGACCTGATGCCG 59.759 55.000 0.00 0.00 36.73 5.69
33 34 0.107508 CTTGGATGATGCGTGGAGGT 60.108 55.000 0.00 0.00 0.00 3.85
144 145 0.827368 GGCTGACTTACTCTCAGGGG 59.173 60.000 0.00 0.00 36.43 4.79
148 149 1.271982 ACGGAGGCTGACTTACTCTCA 60.272 52.381 0.00 0.00 0.00 3.27
532 533 0.172578 TCTACGTCAAGATGTGGGCG 59.827 55.000 5.22 0.00 34.00 6.13
681 682 0.102300 CATCGGCATGTACGTCCTGA 59.898 55.000 10.83 0.00 0.00 3.86
956 957 4.430765 TTTCCCTCCTCGCGTCGC 62.431 66.667 7.29 7.29 0.00 5.19
957 958 2.506438 GTTTCCCTCCTCGCGTCG 60.506 66.667 5.77 0.00 0.00 5.12
960 963 1.373748 TTTCGTTTCCCTCCTCGCG 60.374 57.895 0.00 0.00 0.00 5.87
977 983 1.828331 GCGCACTTTTCCGTCTCGTT 61.828 55.000 0.30 0.00 0.00 3.85
978 984 2.308039 GCGCACTTTTCCGTCTCGT 61.308 57.895 0.30 0.00 0.00 4.18
980 986 1.324736 CATAGCGCACTTTTCCGTCTC 59.675 52.381 11.47 0.00 0.00 3.36
981 987 1.359848 CATAGCGCACTTTTCCGTCT 58.640 50.000 11.47 0.00 0.00 4.18
982 988 0.373716 CCATAGCGCACTTTTCCGTC 59.626 55.000 11.47 0.00 0.00 4.79
984 990 1.721487 CCCATAGCGCACTTTTCCG 59.279 57.895 11.47 0.00 0.00 4.30
985 991 1.433471 GCCCATAGCGCACTTTTCC 59.567 57.895 11.47 0.00 0.00 3.13
1002 1008 1.862806 GGCACGTGAGAGTTGAAGC 59.137 57.895 22.23 0.00 0.00 3.86
1030 1036 5.277154 GCGAGATAGAATAGAGCGATAGGAC 60.277 48.000 0.00 0.00 0.00 3.85
1031 1037 4.812091 GCGAGATAGAATAGAGCGATAGGA 59.188 45.833 0.00 0.00 0.00 2.94
1032 1038 5.090652 GCGAGATAGAATAGAGCGATAGG 57.909 47.826 0.00 0.00 0.00 2.57
1038 1044 2.911819 AGCGCGAGATAGAATAGAGC 57.088 50.000 12.10 0.00 0.00 4.09
1062 1072 2.677979 CGGCGAGAGACACACGAGA 61.678 63.158 0.00 0.00 41.50 4.04
1092 1104 2.510238 CGAAGCAGGCGGGAAGAG 60.510 66.667 0.00 0.00 0.00 2.85
1415 1430 0.673644 GCAGCGGGTTCTGTATGTGT 60.674 55.000 0.00 0.00 36.49 3.72
1420 1435 0.394938 TTCAAGCAGCGGGTTCTGTA 59.605 50.000 0.00 0.00 36.49 2.74
1515 1530 2.166459 CCAGTGCACGAATAGAAGGAGA 59.834 50.000 12.01 0.00 0.00 3.71
1548 1577 3.028850 AGTCCTACAGGCACGCTTTATA 58.971 45.455 0.00 0.00 34.44 0.98
1551 1580 0.320771 CAGTCCTACAGGCACGCTTT 60.321 55.000 0.00 0.00 34.44 3.51
1560 1589 1.568504 TTGGCCCTACAGTCCTACAG 58.431 55.000 0.00 0.00 0.00 2.74
1576 1605 3.985279 CACTTCAAATGCAGTGACATTGG 59.015 43.478 7.32 9.76 40.87 3.16
1728 1757 3.004002 TGAAGCAGTCATTGTTGCAAGAG 59.996 43.478 0.00 0.00 42.67 2.85
1793 1823 9.216087 TCACATTTTGTTATTGCGATAAATACG 57.784 29.630 8.01 0.00 29.89 3.06
1837 1871 3.056107 GGCCTTCCCATTTTCAACCTAAC 60.056 47.826 0.00 0.00 0.00 2.34
2036 2070 3.746045 TGGAGTAAAACGAAGACAGCT 57.254 42.857 0.00 0.00 0.00 4.24
2038 2072 4.318831 GCACTTGGAGTAAAACGAAGACAG 60.319 45.833 0.00 0.00 0.00 3.51
2064 2099 5.437289 AACAATCATCGACATGTTGTGTT 57.563 34.783 12.90 12.03 42.36 3.32
2068 2103 6.989796 TGAAAAACAATCATCGACATGTTG 57.010 33.333 6.77 6.77 36.23 3.33
2172 2236 6.630413 GCAAACTGACCTGGAGTATAGAATCA 60.630 42.308 0.00 0.00 0.00 2.57
2690 2761 5.897377 AAAATCCACACTTAAATCCCTCG 57.103 39.130 0.00 0.00 0.00 4.63
3093 3189 0.034089 ATGCTAGTTTGGCCACCTCC 60.034 55.000 3.88 0.07 0.00 4.30
3578 3679 6.112927 ACATAGTCAAAATTTTGTGCCCAT 57.887 33.333 25.98 14.75 39.18 4.00
3589 3690 8.641541 ACATCCAAGACAAAACATAGTCAAAAT 58.358 29.630 0.00 0.00 37.23 1.82
3951 4054 4.293494 TCTGCAGTCATAGAGAGGGAAAT 58.707 43.478 14.67 0.00 0.00 2.17
4046 4149 3.629398 CCTGGAACTTCTTGCATGGTATC 59.371 47.826 0.00 0.00 0.00 2.24
4122 4225 5.391310 CCTCAAAGACAAAATCTGATGGTCG 60.391 44.000 10.02 0.00 37.88 4.79
4206 4309 7.478520 AGTATCCGCAGATGTTACATAAAAC 57.521 36.000 0.00 0.00 33.67 2.43
4224 4327 4.973168 TGATGCAGACCCATTAAGTATCC 58.027 43.478 0.00 0.00 0.00 2.59
4327 4433 8.674607 ACTCCTACTGTTTGTTACTTCAAAAAG 58.325 33.333 7.52 7.52 43.98 2.27
4453 4573 8.818622 AAGTCATTTAGGGGGTAATTAAGAAC 57.181 34.615 0.00 0.00 0.00 3.01
4546 4709 7.789349 AGGTTATAAAATGTAAATGGCCCAGAT 59.211 33.333 0.00 0.00 0.00 2.90
4549 4712 7.741554 AAGGTTATAAAATGTAAATGGCCCA 57.258 32.000 0.00 0.00 0.00 5.36
4550 4713 9.104965 GAAAAGGTTATAAAATGTAAATGGCCC 57.895 33.333 0.00 0.00 0.00 5.80
4586 4752 8.236585 TGCATAATTAGCATATGTTGTCCTTT 57.763 30.769 4.29 0.00 37.02 3.11
4594 4760 7.514784 TTCTGCTTGCATAATTAGCATATGT 57.485 32.000 10.30 0.00 43.33 2.29
4611 4777 2.843113 AGAACTGGCCTCTATTCTGCTT 59.157 45.455 3.32 0.00 30.26 3.91
4613 4779 2.998316 AGAACTGGCCTCTATTCTGC 57.002 50.000 3.32 0.00 30.26 4.26
4616 4782 3.623510 CCGAAAAGAACTGGCCTCTATTC 59.376 47.826 3.32 2.42 0.00 1.75
4623 4789 1.305930 ATCGCCGAAAAGAACTGGCC 61.306 55.000 0.00 0.00 44.71 5.36
4624 4790 0.521735 AATCGCCGAAAAGAACTGGC 59.478 50.000 0.00 0.00 44.09 4.85
4625 4791 2.076863 AGAATCGCCGAAAAGAACTGG 58.923 47.619 0.00 0.00 0.00 4.00
4627 4793 2.347731 GGAGAATCGCCGAAAAGAACT 58.652 47.619 0.00 0.00 34.37 3.01
4628 4794 1.397343 GGGAGAATCGCCGAAAAGAAC 59.603 52.381 0.00 0.00 43.06 3.01
4629 4795 1.734163 GGGAGAATCGCCGAAAAGAA 58.266 50.000 0.00 0.00 43.06 2.52
4630 4796 3.453559 GGGAGAATCGCCGAAAAGA 57.546 52.632 0.00 0.00 43.06 2.52
4641 4807 1.709994 GGGGGCGATTCTGGGAGAAT 61.710 60.000 0.00 0.00 46.84 2.40
4642 4808 2.375345 GGGGGCGATTCTGGGAGAA 61.375 63.158 0.00 0.00 38.78 2.87
4643 4809 2.768344 GGGGGCGATTCTGGGAGA 60.768 66.667 0.00 0.00 0.00 3.71
4657 4823 2.069430 GGAGAAGCTGAGGAGGGGG 61.069 68.421 0.00 0.00 0.00 5.40
4658 4824 2.069430 GGGAGAAGCTGAGGAGGGG 61.069 68.421 0.00 0.00 0.00 4.79
4659 4825 1.306482 TGGGAGAAGCTGAGGAGGG 60.306 63.158 0.00 0.00 0.00 4.30
4660 4826 0.325110 TCTGGGAGAAGCTGAGGAGG 60.325 60.000 0.00 0.00 0.00 4.30
4661 4827 1.566211 TTCTGGGAGAAGCTGAGGAG 58.434 55.000 0.00 0.00 29.50 3.69
4662 4828 2.114616 GATTCTGGGAGAAGCTGAGGA 58.885 52.381 0.00 0.00 37.62 3.71
4663 4829 1.202510 CGATTCTGGGAGAAGCTGAGG 60.203 57.143 0.00 0.00 38.40 3.86
4664 4830 1.805871 GCGATTCTGGGAGAAGCTGAG 60.806 57.143 0.00 0.00 38.40 3.35
4665 4831 0.176680 GCGATTCTGGGAGAAGCTGA 59.823 55.000 0.00 0.00 38.40 4.26
4666 4832 0.813210 GGCGATTCTGGGAGAAGCTG 60.813 60.000 0.00 0.00 38.40 4.24
4667 4833 1.267574 TGGCGATTCTGGGAGAAGCT 61.268 55.000 0.00 0.00 38.40 3.74
4668 4834 1.092345 GTGGCGATTCTGGGAGAAGC 61.092 60.000 0.00 0.00 37.69 3.86
4669 4835 0.539051 AGTGGCGATTCTGGGAGAAG 59.461 55.000 0.00 0.00 37.69 2.85
4670 4836 0.537188 GAGTGGCGATTCTGGGAGAA 59.463 55.000 0.00 0.00 38.78 2.87
4671 4837 1.330655 GGAGTGGCGATTCTGGGAGA 61.331 60.000 0.00 0.00 0.00 3.71
4672 4838 1.144936 GGAGTGGCGATTCTGGGAG 59.855 63.158 0.00 0.00 0.00 4.30
4673 4839 0.982852 ATGGAGTGGCGATTCTGGGA 60.983 55.000 0.00 0.00 0.00 4.37
4674 4840 0.758734 TATGGAGTGGCGATTCTGGG 59.241 55.000 0.00 0.00 0.00 4.45
4675 4841 2.847327 ATATGGAGTGGCGATTCTGG 57.153 50.000 0.00 0.00 0.00 3.86
4676 4842 5.505173 AAAAATATGGAGTGGCGATTCTG 57.495 39.130 0.00 0.00 0.00 3.02
4742 4908 8.917088 CCCAGAATAATCACTCCATATGTTTTT 58.083 33.333 1.24 0.00 0.00 1.94
4743 4909 8.281531 TCCCAGAATAATCACTCCATATGTTTT 58.718 33.333 1.24 0.00 0.00 2.43
4744 4910 7.815383 TCCCAGAATAATCACTCCATATGTTT 58.185 34.615 1.24 0.00 0.00 2.83
4745 4911 7.293299 TCTCCCAGAATAATCACTCCATATGTT 59.707 37.037 1.24 0.00 0.00 2.71
4746 4912 6.789457 TCTCCCAGAATAATCACTCCATATGT 59.211 38.462 1.24 0.00 0.00 2.29
4747 4913 7.250032 TCTCCCAGAATAATCACTCCATATG 57.750 40.000 0.00 0.00 0.00 1.78
4748 4914 7.528543 GCTTCTCCCAGAATAATCACTCCATAT 60.529 40.741 0.00 0.00 33.13 1.78
4749 4915 6.239714 GCTTCTCCCAGAATAATCACTCCATA 60.240 42.308 0.00 0.00 33.13 2.74
4750 4916 5.455899 GCTTCTCCCAGAATAATCACTCCAT 60.456 44.000 0.00 0.00 33.13 3.41
4751 4917 4.141620 GCTTCTCCCAGAATAATCACTCCA 60.142 45.833 0.00 0.00 33.13 3.86
4752 4918 4.102367 AGCTTCTCCCAGAATAATCACTCC 59.898 45.833 0.00 0.00 33.13 3.85
4753 4919 5.289083 AGCTTCTCCCAGAATAATCACTC 57.711 43.478 0.00 0.00 33.13 3.51
4754 4920 5.306678 CCTAGCTTCTCCCAGAATAATCACT 59.693 44.000 0.00 0.00 33.13 3.41
4755 4921 5.512232 CCCTAGCTTCTCCCAGAATAATCAC 60.512 48.000 0.00 0.00 33.13 3.06
4756 4922 4.594920 CCCTAGCTTCTCCCAGAATAATCA 59.405 45.833 0.00 0.00 33.13 2.57
4757 4923 4.841246 TCCCTAGCTTCTCCCAGAATAATC 59.159 45.833 0.00 0.00 33.13 1.75
4758 4924 4.832492 TCCCTAGCTTCTCCCAGAATAAT 58.168 43.478 0.00 0.00 33.13 1.28
4759 4925 4.227197 CTCCCTAGCTTCTCCCAGAATAA 58.773 47.826 0.00 0.00 33.13 1.40
4760 4926 3.438668 CCTCCCTAGCTTCTCCCAGAATA 60.439 52.174 0.00 0.00 33.13 1.75
4761 4927 2.688477 CTCCCTAGCTTCTCCCAGAAT 58.312 52.381 0.00 0.00 33.13 2.40
4762 4928 1.343478 CCTCCCTAGCTTCTCCCAGAA 60.343 57.143 0.00 0.00 32.50 3.02
4763 4929 0.263172 CCTCCCTAGCTTCTCCCAGA 59.737 60.000 0.00 0.00 0.00 3.86
4764 4930 0.762461 CCCTCCCTAGCTTCTCCCAG 60.762 65.000 0.00 0.00 0.00 4.45
4765 4931 1.314867 CCCTCCCTAGCTTCTCCCA 59.685 63.158 0.00 0.00 0.00 4.37
4766 4932 1.460497 CCCCTCCCTAGCTTCTCCC 60.460 68.421 0.00 0.00 0.00 4.30
4767 4933 1.460497 CCCCCTCCCTAGCTTCTCC 60.460 68.421 0.00 0.00 0.00 3.71
4768 4934 4.304432 CCCCCTCCCTAGCTTCTC 57.696 66.667 0.00 0.00 0.00 2.87
4789 4955 3.644966 TTTGGGCGATTCTACCAGAAT 57.355 42.857 1.09 1.09 46.84 2.40
4790 4956 3.008594 TCTTTTGGGCGATTCTACCAGAA 59.991 43.478 0.00 0.00 38.78 3.02
4791 4957 2.569853 TCTTTTGGGCGATTCTACCAGA 59.430 45.455 0.00 0.00 35.37 3.86
4792 4958 2.985896 TCTTTTGGGCGATTCTACCAG 58.014 47.619 0.00 0.00 35.37 4.00
4793 4959 3.078837 GTTCTTTTGGGCGATTCTACCA 58.921 45.455 0.00 0.00 0.00 3.25
4794 4960 3.127030 CAGTTCTTTTGGGCGATTCTACC 59.873 47.826 0.00 0.00 0.00 3.18
4795 4961 3.127030 CCAGTTCTTTTGGGCGATTCTAC 59.873 47.826 0.00 0.00 31.87 2.59
4796 4962 3.343617 CCAGTTCTTTTGGGCGATTCTA 58.656 45.455 0.00 0.00 31.87 2.10
4797 4963 2.162681 CCAGTTCTTTTGGGCGATTCT 58.837 47.619 0.00 0.00 31.87 2.40
4798 4964 1.402852 GCCAGTTCTTTTGGGCGATTC 60.403 52.381 0.00 0.00 36.58 2.52
4799 4965 0.603065 GCCAGTTCTTTTGGGCGATT 59.397 50.000 0.00 0.00 36.58 3.34
4800 4966 2.267045 GCCAGTTCTTTTGGGCGAT 58.733 52.632 0.00 0.00 36.58 4.58
4801 4967 3.758172 GCCAGTTCTTTTGGGCGA 58.242 55.556 0.00 0.00 36.58 5.54
4804 4970 1.354368 TCTAGGGCCAGTTCTTTTGGG 59.646 52.381 6.18 0.00 36.19 4.12
4805 4971 2.879103 TCTAGGGCCAGTTCTTTTGG 57.121 50.000 6.18 0.00 38.78 3.28
4806 4972 7.260603 CAAAATATCTAGGGCCAGTTCTTTTG 58.739 38.462 6.18 12.68 0.00 2.44
4807 4973 6.381133 CCAAAATATCTAGGGCCAGTTCTTTT 59.619 38.462 6.18 5.55 0.00 2.27
4808 4974 5.893824 CCAAAATATCTAGGGCCAGTTCTTT 59.106 40.000 6.18 0.00 0.00 2.52
4809 4975 5.044105 ACCAAAATATCTAGGGCCAGTTCTT 60.044 40.000 6.18 0.00 0.00 2.52
4810 4976 4.478686 ACCAAAATATCTAGGGCCAGTTCT 59.521 41.667 6.18 0.00 0.00 3.01
4811 4977 4.793201 ACCAAAATATCTAGGGCCAGTTC 58.207 43.478 6.18 0.00 0.00 3.01
4812 4978 4.881157 ACCAAAATATCTAGGGCCAGTT 57.119 40.909 6.18 0.00 0.00 3.16
4813 4979 5.987019 TTACCAAAATATCTAGGGCCAGT 57.013 39.130 6.18 0.00 0.00 4.00
4814 4980 6.601332 TCTTTACCAAAATATCTAGGGCCAG 58.399 40.000 6.18 0.85 0.00 4.85
4815 4981 6.388689 TCTCTTTACCAAAATATCTAGGGCCA 59.611 38.462 6.18 0.00 0.00 5.36
4816 4982 6.838382 TCTCTTTACCAAAATATCTAGGGCC 58.162 40.000 0.00 0.00 0.00 5.80
4817 4983 8.926092 ATTCTCTTTACCAAAATATCTAGGGC 57.074 34.615 0.00 0.00 0.00 5.19
4826 4992 8.980596 TGGATTGCATATTCTCTTTACCAAAAT 58.019 29.630 0.00 0.00 0.00 1.82
4827 4993 8.359875 TGGATTGCATATTCTCTTTACCAAAA 57.640 30.769 0.00 0.00 0.00 2.44
4828 4994 7.953005 TGGATTGCATATTCTCTTTACCAAA 57.047 32.000 0.00 0.00 0.00 3.28
4831 4997 9.252962 CAAAATGGATTGCATATTCTCTTTACC 57.747 33.333 0.00 0.00 0.00 2.85
4868 5034 3.461085 ACGGAGGGAGTACTTGGATAGTA 59.539 47.826 0.00 0.00 38.33 1.82
4869 5035 2.244252 ACGGAGGGAGTACTTGGATAGT 59.756 50.000 0.00 0.00 41.04 2.12
4870 5036 2.946785 ACGGAGGGAGTACTTGGATAG 58.053 52.381 0.00 0.00 0.00 2.08
4872 5038 3.117246 TGATACGGAGGGAGTACTTGGAT 60.117 47.826 0.00 0.00 0.00 3.41
4873 5039 2.242965 TGATACGGAGGGAGTACTTGGA 59.757 50.000 0.00 0.00 0.00 3.53
4875 5041 4.730949 TTTGATACGGAGGGAGTACTTG 57.269 45.455 0.00 0.00 0.00 3.16
4876 5042 5.671493 CATTTTGATACGGAGGGAGTACTT 58.329 41.667 0.00 0.00 0.00 2.24
4877 5043 4.443034 GCATTTTGATACGGAGGGAGTACT 60.443 45.833 0.00 0.00 0.00 2.73
4878 5044 3.808174 GCATTTTGATACGGAGGGAGTAC 59.192 47.826 0.00 0.00 0.00 2.73
4879 5045 3.452990 TGCATTTTGATACGGAGGGAGTA 59.547 43.478 0.00 0.00 0.00 2.59
4880 5046 2.238646 TGCATTTTGATACGGAGGGAGT 59.761 45.455 0.00 0.00 0.00 3.85
4881 5047 2.917933 TGCATTTTGATACGGAGGGAG 58.082 47.619 0.00 0.00 0.00 4.30
4882 5048 3.054728 TCTTGCATTTTGATACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
4883 5049 3.065371 GTCTTGCATTTTGATACGGAGGG 59.935 47.826 0.00 0.00 0.00 4.30
4884 5050 3.242413 CGTCTTGCATTTTGATACGGAGG 60.242 47.826 0.00 0.00 0.00 4.30
4885 5051 3.370978 ACGTCTTGCATTTTGATACGGAG 59.629 43.478 0.00 0.00 33.44 4.63
4886 5052 3.331150 ACGTCTTGCATTTTGATACGGA 58.669 40.909 0.00 0.00 33.44 4.69
4887 5053 3.740044 ACGTCTTGCATTTTGATACGG 57.260 42.857 0.00 0.00 33.44 4.02
4888 5054 5.851177 AGAAAACGTCTTGCATTTTGATACG 59.149 36.000 0.00 0.00 29.66 3.06
4889 5055 7.623268 AAGAAAACGTCTTGCATTTTGATAC 57.377 32.000 0.00 0.00 45.29 2.24
4890 5056 8.722342 GTAAGAAAACGTCTTGCATTTTGATA 57.278 30.769 0.00 0.00 46.48 2.15
4891 5057 7.623268 GTAAGAAAACGTCTTGCATTTTGAT 57.377 32.000 0.00 0.00 46.48 2.57
4899 5065 6.462073 TCATAGTGTAAGAAAACGTCTTGC 57.538 37.500 0.00 0.00 46.48 4.01
4904 5070 9.367444 CCTCTTTATCATAGTGTAAGAAAACGT 57.633 33.333 0.00 0.00 0.00 3.99
4905 5071 9.582431 TCCTCTTTATCATAGTGTAAGAAAACG 57.418 33.333 0.00 0.00 0.00 3.60
4910 5076 8.696374 CCACTTCCTCTTTATCATAGTGTAAGA 58.304 37.037 0.00 0.00 31.89 2.10
4911 5077 8.696374 TCCACTTCCTCTTTATCATAGTGTAAG 58.304 37.037 0.00 0.00 31.89 2.34
4912 5078 8.603898 TCCACTTCCTCTTTATCATAGTGTAA 57.396 34.615 0.00 0.00 31.89 2.41
4913 5079 7.839705 ACTCCACTTCCTCTTTATCATAGTGTA 59.160 37.037 0.00 0.00 31.89 2.90
4914 5080 6.670027 ACTCCACTTCCTCTTTATCATAGTGT 59.330 38.462 0.00 0.00 31.89 3.55
4915 5081 7.118496 ACTCCACTTCCTCTTTATCATAGTG 57.882 40.000 0.00 0.00 33.21 2.74
4920 5086 9.434275 TGAATATACTCCACTTCCTCTTTATCA 57.566 33.333 0.00 0.00 0.00 2.15
4924 5090 9.807921 TTTTTGAATATACTCCACTTCCTCTTT 57.192 29.630 0.00 0.00 0.00 2.52
4925 5091 9.454859 CTTTTTGAATATACTCCACTTCCTCTT 57.545 33.333 0.00 0.00 0.00 2.85
4926 5092 8.826765 TCTTTTTGAATATACTCCACTTCCTCT 58.173 33.333 0.00 0.00 0.00 3.69
4927 5093 9.103861 CTCTTTTTGAATATACTCCACTTCCTC 57.896 37.037 0.00 0.00 0.00 3.71
4928 5094 8.826765 TCTCTTTTTGAATATACTCCACTTCCT 58.173 33.333 0.00 0.00 0.00 3.36
4929 5095 9.620259 ATCTCTTTTTGAATATACTCCACTTCC 57.380 33.333 0.00 0.00 0.00 3.46
4946 5112 8.082242 GTGTGCTGTACCAATTTATCTCTTTTT 58.918 33.333 0.00 0.00 0.00 1.94
4949 5115 6.237901 TGTGTGCTGTACCAATTTATCTCTT 58.762 36.000 0.00 0.00 0.00 2.85
4967 5133 8.255394 TGCATCACTTATATACATATGTGTGC 57.745 34.615 18.81 17.65 41.85 4.57
4977 5143 7.332926 CCCACTTCTCATGCATCACTTATATAC 59.667 40.741 0.00 0.00 0.00 1.47
4990 5156 1.896220 TGTGTTCCCACTTCTCATGC 58.104 50.000 0.00 0.00 42.34 4.06
5023 5189 3.769536 CCCGTGGCACAAAAGATATTTC 58.230 45.455 19.09 0.00 44.16 2.17
5053 5219 0.533085 GATTTCTCACCTAGGCCCGC 60.533 60.000 9.30 0.00 0.00 6.13
5081 5247 5.049680 CCAGCAACTAAGCGTTAGAGAAAAA 60.050 40.000 10.46 0.00 40.15 1.94
5082 5248 4.451096 CCAGCAACTAAGCGTTAGAGAAAA 59.549 41.667 10.46 0.00 40.15 2.29
5083 5249 3.994392 CCAGCAACTAAGCGTTAGAGAAA 59.006 43.478 10.46 0.00 40.15 2.52
5084 5250 3.585862 CCAGCAACTAAGCGTTAGAGAA 58.414 45.455 10.46 0.00 40.15 2.87
5085 5251 2.674177 GCCAGCAACTAAGCGTTAGAGA 60.674 50.000 10.46 0.00 40.15 3.10
5086 5252 1.661112 GCCAGCAACTAAGCGTTAGAG 59.339 52.381 10.46 0.00 40.15 2.43
5087 5253 1.001520 TGCCAGCAACTAAGCGTTAGA 59.998 47.619 10.46 0.00 40.15 2.10
5088 5254 1.438651 TGCCAGCAACTAAGCGTTAG 58.561 50.000 0.00 4.02 40.15 2.34
5089 5255 2.107950 ATGCCAGCAACTAAGCGTTA 57.892 45.000 0.00 0.00 40.15 3.18
5090 5256 1.068333 CAATGCCAGCAACTAAGCGTT 60.068 47.619 0.00 0.00 40.15 4.84
5091 5257 0.523072 CAATGCCAGCAACTAAGCGT 59.477 50.000 0.00 0.00 40.15 5.07
5092 5258 0.523072 ACAATGCCAGCAACTAAGCG 59.477 50.000 0.00 0.00 40.15 4.68
5093 5259 1.541147 TCACAATGCCAGCAACTAAGC 59.459 47.619 0.00 0.00 0.00 3.09
5094 5260 3.004629 TGTTCACAATGCCAGCAACTAAG 59.995 43.478 0.00 0.00 0.00 2.18
5095 5261 2.954989 TGTTCACAATGCCAGCAACTAA 59.045 40.909 0.00 0.00 0.00 2.24
5096 5262 2.553602 CTGTTCACAATGCCAGCAACTA 59.446 45.455 0.00 0.00 0.00 2.24
5097 5263 1.338973 CTGTTCACAATGCCAGCAACT 59.661 47.619 0.00 0.00 0.00 3.16
5098 5264 1.067516 ACTGTTCACAATGCCAGCAAC 59.932 47.619 0.00 0.00 0.00 4.17
5099 5265 1.067364 CACTGTTCACAATGCCAGCAA 59.933 47.619 0.00 0.00 0.00 3.91
5100 5266 0.669619 CACTGTTCACAATGCCAGCA 59.330 50.000 0.00 0.00 0.00 4.41
5101 5267 0.038892 CCACTGTTCACAATGCCAGC 60.039 55.000 0.00 0.00 0.00 4.85
5102 5268 0.038892 GCCACTGTTCACAATGCCAG 60.039 55.000 0.00 0.00 0.00 4.85
5103 5269 1.794151 CGCCACTGTTCACAATGCCA 61.794 55.000 0.00 0.00 0.00 4.92
5104 5270 1.081242 CGCCACTGTTCACAATGCC 60.081 57.895 0.00 0.00 0.00 4.40
5105 5271 1.081242 CCGCCACTGTTCACAATGC 60.081 57.895 0.00 0.00 0.00 3.56
5106 5272 0.518636 CTCCGCCACTGTTCACAATG 59.481 55.000 0.00 0.00 0.00 2.82
5107 5273 0.396435 TCTCCGCCACTGTTCACAAT 59.604 50.000 0.00 0.00 0.00 2.71
5108 5274 0.531974 GTCTCCGCCACTGTTCACAA 60.532 55.000 0.00 0.00 0.00 3.33
5109 5275 1.069090 GTCTCCGCCACTGTTCACA 59.931 57.895 0.00 0.00 0.00 3.58
5110 5276 0.946221 CTGTCTCCGCCACTGTTCAC 60.946 60.000 0.00 0.00 0.00 3.18
5111 5277 1.367471 CTGTCTCCGCCACTGTTCA 59.633 57.895 0.00 0.00 0.00 3.18
5112 5278 1.374758 CCTGTCTCCGCCACTGTTC 60.375 63.158 0.00 0.00 0.00 3.18
5113 5279 2.743718 CCTGTCTCCGCCACTGTT 59.256 61.111 0.00 0.00 0.00 3.16
5114 5280 3.314331 CCCTGTCTCCGCCACTGT 61.314 66.667 0.00 0.00 0.00 3.55
5115 5281 4.087892 CCCCTGTCTCCGCCACTG 62.088 72.222 0.00 0.00 0.00 3.66
5116 5282 4.640690 ACCCCTGTCTCCGCCACT 62.641 66.667 0.00 0.00 0.00 4.00
5117 5283 4.394712 CACCCCTGTCTCCGCCAC 62.395 72.222 0.00 0.00 0.00 5.01
5121 5287 4.087892 CTGGCACCCCTGTCTCCG 62.088 72.222 0.00 0.00 0.00 4.63
5122 5288 4.416738 GCTGGCACCCCTGTCTCC 62.417 72.222 0.00 0.00 32.98 3.71
5123 5289 3.640407 TGCTGGCACCCCTGTCTC 61.640 66.667 0.00 0.00 32.98 3.36
5124 5290 3.958860 GTGCTGGCACCCCTGTCT 61.959 66.667 14.03 0.00 40.79 3.41
5140 5306 4.342086 TTAGGGGCCAGGGTCCGT 62.342 66.667 4.39 9.38 41.67 4.69
5141 5307 3.793888 GTTAGGGGCCAGGGTCCG 61.794 72.222 4.39 0.00 41.67 4.79
5142 5308 2.235761 TTGTTAGGGGCCAGGGTCC 61.236 63.158 4.39 0.00 39.62 4.46
5143 5309 1.001269 GTTGTTAGGGGCCAGGGTC 60.001 63.158 4.39 0.00 0.00 4.46
5144 5310 1.146544 ATGTTGTTAGGGGCCAGGGT 61.147 55.000 4.39 0.00 0.00 4.34
5145 5311 0.684153 CATGTTGTTAGGGGCCAGGG 60.684 60.000 4.39 0.00 0.00 4.45
5146 5312 0.331278 TCATGTTGTTAGGGGCCAGG 59.669 55.000 4.39 0.00 0.00 4.45
5147 5313 2.214376 TTCATGTTGTTAGGGGCCAG 57.786 50.000 4.39 0.00 0.00 4.85
5148 5314 2.917713 ATTCATGTTGTTAGGGGCCA 57.082 45.000 4.39 0.00 0.00 5.36
5149 5315 4.709886 AGTAAATTCATGTTGTTAGGGGCC 59.290 41.667 0.00 0.00 0.00 5.80
5150 5316 5.914898 AGTAAATTCATGTTGTTAGGGGC 57.085 39.130 0.00 0.00 0.00 5.80
5151 5317 9.675464 TTAGTAGTAAATTCATGTTGTTAGGGG 57.325 33.333 0.00 0.00 0.00 4.79
5173 5339 9.787435 TTCAACACTATTCACCAGTAATTTAGT 57.213 29.630 0.00 0.00 0.00 2.24
5181 5347 9.520515 AATTCTAATTCAACACTATTCACCAGT 57.479 29.630 0.00 0.00 0.00 4.00
5221 5387 9.822185 GGCCAATTCATAGAAAAATAGATGTTT 57.178 29.630 0.00 0.00 0.00 2.83
5222 5388 8.424133 GGGCCAATTCATAGAAAAATAGATGTT 58.576 33.333 4.39 0.00 0.00 2.71
5223 5389 7.786464 AGGGCCAATTCATAGAAAAATAGATGT 59.214 33.333 6.18 0.00 0.00 3.06
5224 5390 8.186709 AGGGCCAATTCATAGAAAAATAGATG 57.813 34.615 6.18 0.00 0.00 2.90
5225 5391 7.452813 GGAGGGCCAATTCATAGAAAAATAGAT 59.547 37.037 6.18 0.00 0.00 1.98
5226 5392 6.777580 GGAGGGCCAATTCATAGAAAAATAGA 59.222 38.462 6.18 0.00 0.00 1.98
5227 5393 6.015095 GGGAGGGCCAATTCATAGAAAAATAG 60.015 42.308 6.18 0.00 35.15 1.73
5228 5394 5.838521 GGGAGGGCCAATTCATAGAAAAATA 59.161 40.000 6.18 0.00 35.15 1.40
5229 5395 4.655649 GGGAGGGCCAATTCATAGAAAAAT 59.344 41.667 6.18 0.00 35.15 1.82
5230 5396 4.030216 GGGAGGGCCAATTCATAGAAAAA 58.970 43.478 6.18 0.00 35.15 1.94
5231 5397 3.629796 GGGGAGGGCCAATTCATAGAAAA 60.630 47.826 6.18 0.00 35.15 2.29
5232 5398 2.091333 GGGGAGGGCCAATTCATAGAAA 60.091 50.000 6.18 0.00 35.15 2.52
5233 5399 1.499007 GGGGAGGGCCAATTCATAGAA 59.501 52.381 6.18 0.00 35.15 2.10
5234 5400 1.149101 GGGGAGGGCCAATTCATAGA 58.851 55.000 6.18 0.00 35.15 1.98
5235 5401 0.852842 TGGGGAGGGCCAATTCATAG 59.147 55.000 6.18 0.00 35.15 2.23
5236 5402 1.063266 GTTGGGGAGGGCCAATTCATA 60.063 52.381 6.18 0.00 35.15 2.15
5237 5403 0.325577 GTTGGGGAGGGCCAATTCAT 60.326 55.000 6.18 0.00 35.15 2.57
5238 5404 1.078347 GTTGGGGAGGGCCAATTCA 59.922 57.895 6.18 0.00 35.15 2.57
5239 5405 1.685765 GGTTGGGGAGGGCCAATTC 60.686 63.158 6.18 0.00 35.15 2.17
5240 5406 0.853586 TAGGTTGGGGAGGGCCAATT 60.854 55.000 6.18 0.00 35.15 2.32
5241 5407 0.630478 ATAGGTTGGGGAGGGCCAAT 60.630 55.000 6.18 0.00 35.15 3.16
5242 5408 0.853586 AATAGGTTGGGGAGGGCCAA 60.854 55.000 6.18 0.00 35.15 4.52
5243 5409 0.853586 AAATAGGTTGGGGAGGGCCA 60.854 55.000 6.18 0.00 35.15 5.36
5244 5410 0.106167 GAAATAGGTTGGGGAGGGCC 60.106 60.000 0.00 0.00 0.00 5.80
5245 5411 0.629058 TGAAATAGGTTGGGGAGGGC 59.371 55.000 0.00 0.00 0.00 5.19
5246 5412 1.923148 ACTGAAATAGGTTGGGGAGGG 59.077 52.381 0.00 0.00 0.00 4.30
5247 5413 2.357154 CCACTGAAATAGGTTGGGGAGG 60.357 54.545 0.00 0.00 0.00 4.30
5248 5414 2.945890 GCCACTGAAATAGGTTGGGGAG 60.946 54.545 0.00 0.00 0.00 4.30
5249 5415 1.005450 GCCACTGAAATAGGTTGGGGA 59.995 52.381 0.00 0.00 0.00 4.81
5250 5416 1.272425 TGCCACTGAAATAGGTTGGGG 60.272 52.381 0.00 0.00 0.00 4.96
5251 5417 1.818674 GTGCCACTGAAATAGGTTGGG 59.181 52.381 0.00 0.00 0.00 4.12
5252 5418 2.795329 AGTGCCACTGAAATAGGTTGG 58.205 47.619 0.00 0.00 0.00 3.77
5253 5419 3.612479 GCAAGTGCCACTGAAATAGGTTG 60.612 47.826 0.00 0.00 34.31 3.77
5254 5420 2.558359 GCAAGTGCCACTGAAATAGGTT 59.442 45.455 0.00 0.00 34.31 3.50
5255 5421 2.162681 GCAAGTGCCACTGAAATAGGT 58.837 47.619 0.00 0.00 34.31 3.08
5256 5422 2.927553 GCAAGTGCCACTGAAATAGG 57.072 50.000 0.00 0.00 34.31 2.57
5281 5447 3.134623 GGCAGAAAAATTGGATTAGGGGG 59.865 47.826 0.00 0.00 0.00 5.40
5282 5448 4.033009 AGGCAGAAAAATTGGATTAGGGG 58.967 43.478 0.00 0.00 0.00 4.79
5283 5449 4.100035 GGAGGCAGAAAAATTGGATTAGGG 59.900 45.833 0.00 0.00 0.00 3.53
5284 5450 4.202050 CGGAGGCAGAAAAATTGGATTAGG 60.202 45.833 0.00 0.00 0.00 2.69
5285 5451 4.734695 GCGGAGGCAGAAAAATTGGATTAG 60.735 45.833 0.00 0.00 39.62 1.73
5286 5452 3.130340 GCGGAGGCAGAAAAATTGGATTA 59.870 43.478 0.00 0.00 39.62 1.75
5287 5453 2.094026 GCGGAGGCAGAAAAATTGGATT 60.094 45.455 0.00 0.00 39.62 3.01
5288 5454 1.478105 GCGGAGGCAGAAAAATTGGAT 59.522 47.619 0.00 0.00 39.62 3.41
5289 5455 0.887933 GCGGAGGCAGAAAAATTGGA 59.112 50.000 0.00 0.00 39.62 3.53
5290 5456 3.423848 GCGGAGGCAGAAAAATTGG 57.576 52.632 0.00 0.00 39.62 3.16
5302 5468 3.895025 CACAATCAGTGGCGGAGG 58.105 61.111 0.00 0.00 44.69 4.30
5310 5476 4.260170 GAGAAGAGGCATTCACAATCAGT 58.740 43.478 5.44 0.00 0.00 3.41
5311 5477 4.259356 TGAGAAGAGGCATTCACAATCAG 58.741 43.478 5.44 0.00 28.65 2.90
5312 5478 4.290711 TGAGAAGAGGCATTCACAATCA 57.709 40.909 5.44 0.00 28.65 2.57
5313 5479 4.940046 TCTTGAGAAGAGGCATTCACAATC 59.060 41.667 12.92 1.17 38.50 2.67
5314 5480 4.914983 TCTTGAGAAGAGGCATTCACAAT 58.085 39.130 12.92 0.00 38.50 2.71
5315 5481 4.356405 TCTTGAGAAGAGGCATTCACAA 57.644 40.909 12.27 12.27 37.41 3.33
5326 5492 7.178451 TGTGGTATTATCACACTCTTGAGAAGA 59.822 37.037 5.66 0.00 39.83 2.87
5327 5493 7.323420 TGTGGTATTATCACACTCTTGAGAAG 58.677 38.462 5.66 0.00 39.83 2.85
5328 5494 7.239763 TGTGGTATTATCACACTCTTGAGAA 57.760 36.000 5.66 0.00 39.83 2.87
5329 5495 6.850752 TGTGGTATTATCACACTCTTGAGA 57.149 37.500 5.66 0.00 39.83 3.27
5330 5496 7.765819 TCAATGTGGTATTATCACACTCTTGAG 59.234 37.037 11.86 0.00 46.19 3.02
5331 5497 7.619965 TCAATGTGGTATTATCACACTCTTGA 58.380 34.615 11.86 14.14 46.19 3.02
5332 5498 7.848223 TCAATGTGGTATTATCACACTCTTG 57.152 36.000 11.86 12.30 46.19 3.02
5333 5499 9.466497 AAATCAATGTGGTATTATCACACTCTT 57.534 29.630 11.86 0.71 46.19 2.85
5334 5500 8.896744 CAAATCAATGTGGTATTATCACACTCT 58.103 33.333 11.86 0.00 46.19 3.24
5335 5501 8.892723 TCAAATCAATGTGGTATTATCACACTC 58.107 33.333 11.86 0.00 46.19 3.51
5336 5502 8.806429 TCAAATCAATGTGGTATTATCACACT 57.194 30.769 11.86 0.00 46.19 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.