Multiple sequence alignment - TraesCS5A01G416400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G416400 chr5A 100.000 4515 0 0 1 4515 605151994 605156508 0.000000e+00 8338
1 TraesCS5A01G416400 chr5A 94.495 109 5 1 1686 1793 605153586 605153694 2.790000e-37 167
2 TraesCS5A01G416400 chr5A 94.495 109 5 1 1593 1701 605153679 605153786 2.790000e-37 167
3 TraesCS5A01G416400 chr5B 91.485 2431 132 32 1686 4067 594874024 594876428 0.000000e+00 3273
4 TraesCS5A01G416400 chr5B 88.120 1330 86 32 372 1659 594872791 594874090 0.000000e+00 1515
5 TraesCS5A01G416400 chr5B 90.909 539 28 7 1873 2402 38053299 38053825 0.000000e+00 704
6 TraesCS5A01G416400 chr5B 94.105 458 24 3 2400 2856 38091711 38092166 0.000000e+00 693
7 TraesCS5A01G416400 chr5B 88.660 97 2 2 4065 4157 594905594 594905685 4.780000e-20 110
8 TraesCS5A01G416400 chr5D 89.372 2437 147 44 1686 4090 483697574 483699930 0.000000e+00 2963
9 TraesCS5A01G416400 chr5D 90.077 1300 69 23 372 1659 483696389 483697640 0.000000e+00 1631
10 TraesCS5A01G416400 chr5D 88.674 362 30 5 4121 4476 483699926 483700282 8.970000e-117 431
11 TraesCS5A01G416400 chr5D 90.722 97 4 4 1 92 483696137 483696233 1.710000e-24 124
12 TraesCS5A01G416400 chr7A 87.368 665 82 2 2840 3503 663531166 663531829 0.000000e+00 761
13 TraesCS5A01G416400 chr7A 94.207 397 23 0 1001 1397 663529035 663529431 1.390000e-169 606
14 TraesCS5A01G416400 chr1B 87.106 667 81 5 2840 3502 544997393 544996728 0.000000e+00 750
15 TraesCS5A01G416400 chr1B 91.155 407 36 0 991 1397 473822298 473822704 1.840000e-153 553
16 TraesCS5A01G416400 chr1A 86.957 667 82 5 2840 3502 500563593 500562928 0.000000e+00 745
17 TraesCS5A01G416400 chr1A 91.422 408 33 2 991 1397 452018567 452018973 3.940000e-155 558
18 TraesCS5A01G416400 chr7B 86.767 665 86 2 2840 3503 632491662 632492325 0.000000e+00 739
19 TraesCS5A01G416400 chr7D 86.466 665 88 2 2840 3503 573694313 573694976 0.000000e+00 728
20 TraesCS5A01G416400 chr7D 94.458 397 22 0 1001 1397 573692185 573692581 2.990000e-171 612
21 TraesCS5A01G416400 chr1D 86.207 667 87 5 2840 3502 405111107 405110442 0.000000e+00 717
22 TraesCS5A01G416400 chr1D 91.667 408 32 2 991 1397 351245572 351245978 8.480000e-157 564
23 TraesCS5A01G416400 chr3D 86.454 657 83 5 2840 3493 438943409 438944062 0.000000e+00 715
24 TraesCS5A01G416400 chrUn 92.250 400 31 0 997 1396 126673962 126674361 6.550000e-158 568
25 TraesCS5A01G416400 chr6A 92.405 395 30 0 1003 1397 115944849 115945243 8.480000e-157 564


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G416400 chr5A 605151994 605156508 4514 False 2890.666667 8338 96.33000 1 4515 3 chr5A.!!$F1 4514
1 TraesCS5A01G416400 chr5B 594872791 594876428 3637 False 2394.000000 3273 89.80250 372 4067 2 chr5B.!!$F4 3695
2 TraesCS5A01G416400 chr5B 38053299 38053825 526 False 704.000000 704 90.90900 1873 2402 1 chr5B.!!$F1 529
3 TraesCS5A01G416400 chr5D 483696137 483700282 4145 False 1287.250000 2963 89.71125 1 4476 4 chr5D.!!$F1 4475
4 TraesCS5A01G416400 chr7A 663529035 663531829 2794 False 683.500000 761 90.78750 1001 3503 2 chr7A.!!$F1 2502
5 TraesCS5A01G416400 chr1B 544996728 544997393 665 True 750.000000 750 87.10600 2840 3502 1 chr1B.!!$R1 662
6 TraesCS5A01G416400 chr1A 500562928 500563593 665 True 745.000000 745 86.95700 2840 3502 1 chr1A.!!$R1 662
7 TraesCS5A01G416400 chr7B 632491662 632492325 663 False 739.000000 739 86.76700 2840 3503 1 chr7B.!!$F1 663
8 TraesCS5A01G416400 chr7D 573692185 573694976 2791 False 670.000000 728 90.46200 1001 3503 2 chr7D.!!$F1 2502
9 TraesCS5A01G416400 chr1D 405110442 405111107 665 True 717.000000 717 86.20700 2840 3502 1 chr1D.!!$R1 662
10 TraesCS5A01G416400 chr3D 438943409 438944062 653 False 715.000000 715 86.45400 2840 3493 1 chr3D.!!$F1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 369 0.035056 CAAGGAGCCCGTTTCCTCAT 60.035 55.0 0.72 0.0 44.24 2.90 F
910 946 0.178990 GAATTCCCGAATCCCCCAGG 60.179 60.0 0.00 0.0 0.00 4.45 F
1570 1667 0.106015 ATCCCCAGGGTGCTAATTGC 60.106 55.0 4.22 0.0 43.25 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 1626 0.106015 AATTAGCACCCTGGGGATGC 60.106 55.0 18.88 18.44 40.24 3.91 R
2030 2133 0.597568 TCAAGCAAGCCAATCCAACG 59.402 50.0 0.00 0.00 0.00 4.10 R
3552 4814 0.032678 ACACAGCGACAGACCTGAAG 59.967 55.0 3.76 0.00 33.40 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.037697 AATCGCGGCCGCTATCATTA 60.038 50.000 43.60 21.83 39.32 1.90
27 28 0.175760 ATCGCGGCCGCTATCATTAT 59.824 50.000 43.60 22.94 39.32 1.28
29 30 0.735978 CGCGGCCGCTATCATTATCA 60.736 55.000 43.60 0.00 39.32 2.15
30 31 1.656652 GCGGCCGCTATCATTATCAT 58.343 50.000 41.71 0.00 38.26 2.45
99 105 4.391155 AGGTACTACGATCAGCTTAGAGG 58.609 47.826 0.00 0.00 36.02 3.69
100 106 3.502979 GGTACTACGATCAGCTTAGAGGG 59.497 52.174 0.00 0.00 0.00 4.30
101 107 2.588620 ACTACGATCAGCTTAGAGGGG 58.411 52.381 0.00 0.00 0.00 4.79
102 108 1.271102 CTACGATCAGCTTAGAGGGGC 59.729 57.143 0.00 0.00 0.00 5.80
104 110 0.755686 CGATCAGCTTAGAGGGGCTT 59.244 55.000 0.00 0.00 36.59 4.35
105 111 1.539929 CGATCAGCTTAGAGGGGCTTG 60.540 57.143 0.00 0.00 36.59 4.01
107 113 1.656587 TCAGCTTAGAGGGGCTTGAA 58.343 50.000 0.00 0.00 36.59 2.69
108 114 1.279271 TCAGCTTAGAGGGGCTTGAAC 59.721 52.381 0.00 0.00 36.59 3.18
110 116 0.328258 GCTTAGAGGGGCTTGAACCA 59.672 55.000 0.00 0.00 0.00 3.67
111 117 1.271926 GCTTAGAGGGGCTTGAACCAA 60.272 52.381 0.00 0.00 0.00 3.67
113 119 2.579410 TAGAGGGGCTTGAACCAAAC 57.421 50.000 0.00 0.00 0.00 2.93
114 120 0.537371 AGAGGGGCTTGAACCAAACG 60.537 55.000 0.00 0.00 0.00 3.60
115 121 0.822121 GAGGGGCTTGAACCAAACGT 60.822 55.000 0.00 0.00 0.00 3.99
117 123 0.822121 GGGGCTTGAACCAAACGTCT 60.822 55.000 0.00 0.00 0.00 4.18
118 124 1.543871 GGGGCTTGAACCAAACGTCTA 60.544 52.381 0.00 0.00 0.00 2.59
119 125 1.534163 GGGCTTGAACCAAACGTCTAC 59.466 52.381 0.00 0.00 0.00 2.59
120 126 2.490991 GGCTTGAACCAAACGTCTACT 58.509 47.619 0.00 0.00 0.00 2.57
121 127 2.479275 GGCTTGAACCAAACGTCTACTC 59.521 50.000 0.00 0.00 0.00 2.59
122 128 3.128349 GCTTGAACCAAACGTCTACTCA 58.872 45.455 0.00 0.00 0.00 3.41
123 129 3.184581 GCTTGAACCAAACGTCTACTCAG 59.815 47.826 0.00 0.00 0.00 3.35
125 131 2.101750 TGAACCAAACGTCTACTCAGCA 59.898 45.455 0.00 0.00 0.00 4.41
126 132 2.902705 ACCAAACGTCTACTCAGCAA 57.097 45.000 0.00 0.00 0.00 3.91
127 133 3.188159 ACCAAACGTCTACTCAGCAAA 57.812 42.857 0.00 0.00 0.00 3.68
128 134 3.537580 ACCAAACGTCTACTCAGCAAAA 58.462 40.909 0.00 0.00 0.00 2.44
129 135 4.134563 ACCAAACGTCTACTCAGCAAAAT 58.865 39.130 0.00 0.00 0.00 1.82
130 136 4.578928 ACCAAACGTCTACTCAGCAAAATT 59.421 37.500 0.00 0.00 0.00 1.82
131 137 5.147162 CCAAACGTCTACTCAGCAAAATTC 58.853 41.667 0.00 0.00 0.00 2.17
132 138 5.147162 CAAACGTCTACTCAGCAAAATTCC 58.853 41.667 0.00 0.00 0.00 3.01
133 139 4.002906 ACGTCTACTCAGCAAAATTCCA 57.997 40.909 0.00 0.00 0.00 3.53
134 140 3.997021 ACGTCTACTCAGCAAAATTCCAG 59.003 43.478 0.00 0.00 0.00 3.86
135 141 3.997021 CGTCTACTCAGCAAAATTCCAGT 59.003 43.478 0.00 0.00 0.00 4.00
136 142 4.143030 CGTCTACTCAGCAAAATTCCAGTG 60.143 45.833 0.00 0.00 0.00 3.66
137 143 4.997395 GTCTACTCAGCAAAATTCCAGTGA 59.003 41.667 0.00 0.00 0.00 3.41
138 144 5.645497 GTCTACTCAGCAAAATTCCAGTGAT 59.355 40.000 0.00 0.00 0.00 3.06
139 145 6.150140 GTCTACTCAGCAAAATTCCAGTGATT 59.850 38.462 0.00 0.00 0.00 2.57
140 146 5.130292 ACTCAGCAAAATTCCAGTGATTG 57.870 39.130 0.00 0.00 0.00 2.67
141 147 4.828939 ACTCAGCAAAATTCCAGTGATTGA 59.171 37.500 0.00 0.00 0.00 2.57
142 148 5.479375 ACTCAGCAAAATTCCAGTGATTGAT 59.521 36.000 0.00 0.00 0.00 2.57
143 149 6.014840 ACTCAGCAAAATTCCAGTGATTGATT 60.015 34.615 0.00 0.00 0.00 2.57
144 150 6.392354 TCAGCAAAATTCCAGTGATTGATTC 58.608 36.000 0.00 0.00 0.00 2.52
145 151 6.015265 TCAGCAAAATTCCAGTGATTGATTCA 60.015 34.615 0.00 0.00 0.00 2.57
146 152 6.310467 CAGCAAAATTCCAGTGATTGATTCAG 59.690 38.462 0.00 0.00 34.17 3.02
147 153 6.209986 AGCAAAATTCCAGTGATTGATTCAGA 59.790 34.615 0.00 0.00 34.17 3.27
148 154 6.869913 GCAAAATTCCAGTGATTGATTCAGAA 59.130 34.615 0.00 0.00 34.17 3.02
149 155 7.385752 GCAAAATTCCAGTGATTGATTCAGAAA 59.614 33.333 0.00 0.00 34.17 2.52
150 156 9.263538 CAAAATTCCAGTGATTGATTCAGAAAA 57.736 29.630 0.00 0.00 34.17 2.29
151 157 9.485206 AAAATTCCAGTGATTGATTCAGAAAAG 57.515 29.630 0.00 0.00 34.17 2.27
152 158 8.413309 AATTCCAGTGATTGATTCAGAAAAGA 57.587 30.769 0.00 0.00 34.17 2.52
153 159 7.822161 TTCCAGTGATTGATTCAGAAAAGAA 57.178 32.000 0.00 0.00 34.17 2.52
154 160 7.822161 TCCAGTGATTGATTCAGAAAAGAAA 57.178 32.000 0.00 0.00 34.17 2.52
155 161 7.879070 TCCAGTGATTGATTCAGAAAAGAAAG 58.121 34.615 0.00 0.00 34.17 2.62
156 162 6.585322 CCAGTGATTGATTCAGAAAAGAAAGC 59.415 38.462 0.00 0.00 34.17 3.51
157 163 7.143340 CAGTGATTGATTCAGAAAAGAAAGCA 58.857 34.615 0.00 0.00 34.17 3.91
158 164 7.813148 CAGTGATTGATTCAGAAAAGAAAGCAT 59.187 33.333 0.00 0.00 34.17 3.79
159 165 8.365647 AGTGATTGATTCAGAAAAGAAAGCATT 58.634 29.630 0.00 0.00 34.17 3.56
160 166 9.630098 GTGATTGATTCAGAAAAGAAAGCATTA 57.370 29.630 0.00 0.00 34.17 1.90
165 171 9.480053 TGATTCAGAAAAGAAAGCATTAAAAGG 57.520 29.630 0.00 0.00 0.00 3.11
166 172 9.481340 GATTCAGAAAAGAAAGCATTAAAAGGT 57.519 29.630 0.00 0.00 0.00 3.50
167 173 9.836864 ATTCAGAAAAGAAAGCATTAAAAGGTT 57.163 25.926 0.00 0.00 0.00 3.50
168 174 9.665719 TTCAGAAAAGAAAGCATTAAAAGGTTT 57.334 25.926 7.82 7.82 39.17 3.27
169 175 9.665719 TCAGAAAAGAAAGCATTAAAAGGTTTT 57.334 25.926 9.04 0.00 36.88 2.43
170 176 9.706846 CAGAAAAGAAAGCATTAAAAGGTTTTG 57.293 29.630 9.04 1.50 36.88 2.44
171 177 8.892723 AGAAAAGAAAGCATTAAAAGGTTTTGG 58.107 29.630 9.04 0.00 36.88 3.28
172 178 6.618287 AAGAAAGCATTAAAAGGTTTTGGC 57.382 33.333 9.04 0.30 36.88 4.52
173 179 5.063204 AGAAAGCATTAAAAGGTTTTGGCC 58.937 37.500 0.00 0.00 36.88 5.36
174 180 4.429854 AAGCATTAAAAGGTTTTGGCCA 57.570 36.364 0.00 0.00 0.00 5.36
175 181 4.429854 AGCATTAAAAGGTTTTGGCCAA 57.570 36.364 16.05 16.05 0.00 4.52
176 182 4.388485 AGCATTAAAAGGTTTTGGCCAAG 58.612 39.130 19.48 3.33 0.00 3.61
177 183 3.058293 GCATTAAAAGGTTTTGGCCAAGC 60.058 43.478 19.48 15.24 0.00 4.01
178 184 2.517650 TAAAAGGTTTTGGCCAAGCG 57.482 45.000 19.48 0.00 0.00 4.68
179 185 0.539518 AAAAGGTTTTGGCCAAGCGT 59.460 45.000 19.48 14.05 0.00 5.07
180 186 0.104120 AAAGGTTTTGGCCAAGCGTC 59.896 50.000 19.48 9.87 0.00 5.19
181 187 2.050442 GGTTTTGGCCAAGCGTCG 60.050 61.111 19.48 0.00 0.00 5.12
182 188 2.050442 GTTTTGGCCAAGCGTCGG 60.050 61.111 19.48 0.00 0.00 4.79
190 196 4.717629 CAAGCGTCGGCGACCTCA 62.718 66.667 31.86 0.00 46.35 3.86
191 197 4.421479 AAGCGTCGGCGACCTCAG 62.421 66.667 31.86 19.71 46.35 3.35
194 200 3.432588 CGTCGGCGACCTCAGACT 61.433 66.667 31.86 0.00 41.33 3.24
195 201 2.486042 GTCGGCGACCTCAGACTC 59.514 66.667 28.72 0.05 0.00 3.36
196 202 2.033602 TCGGCGACCTCAGACTCA 59.966 61.111 4.99 0.00 0.00 3.41
197 203 1.602605 TCGGCGACCTCAGACTCAA 60.603 57.895 4.99 0.00 0.00 3.02
198 204 1.176619 TCGGCGACCTCAGACTCAAA 61.177 55.000 4.99 0.00 0.00 2.69
199 205 0.108615 CGGCGACCTCAGACTCAAAT 60.109 55.000 0.00 0.00 0.00 2.32
200 206 1.646189 GGCGACCTCAGACTCAAATC 58.354 55.000 0.00 0.00 0.00 2.17
201 207 1.272781 GCGACCTCAGACTCAAATCG 58.727 55.000 0.00 0.00 0.00 3.34
202 208 1.272781 CGACCTCAGACTCAAATCGC 58.727 55.000 0.00 0.00 0.00 4.58
203 209 1.402852 CGACCTCAGACTCAAATCGCA 60.403 52.381 0.00 0.00 0.00 5.10
204 210 2.266554 GACCTCAGACTCAAATCGCAG 58.733 52.381 0.00 0.00 0.00 5.18
205 211 1.066573 ACCTCAGACTCAAATCGCAGG 60.067 52.381 0.00 0.00 0.00 4.85
206 212 1.205655 CCTCAGACTCAAATCGCAGGA 59.794 52.381 0.00 0.00 0.00 3.86
207 213 2.354103 CCTCAGACTCAAATCGCAGGAA 60.354 50.000 0.00 0.00 0.00 3.36
208 214 3.529533 CTCAGACTCAAATCGCAGGAAT 58.470 45.455 0.00 0.00 0.00 3.01
209 215 3.937706 CTCAGACTCAAATCGCAGGAATT 59.062 43.478 0.00 0.00 0.00 2.17
210 216 3.686241 TCAGACTCAAATCGCAGGAATTG 59.314 43.478 0.00 0.00 34.93 2.32
222 228 3.655276 CAGGAATTGCAAGCTCAGTTT 57.345 42.857 4.94 0.00 0.00 2.66
223 229 3.314553 CAGGAATTGCAAGCTCAGTTTG 58.685 45.455 4.94 0.00 0.00 2.93
224 230 2.064014 GGAATTGCAAGCTCAGTTTGC 58.936 47.619 18.70 18.70 46.96 3.68
225 231 2.064014 GAATTGCAAGCTCAGTTTGCC 58.936 47.619 22.06 4.27 46.41 4.52
226 232 0.038892 ATTGCAAGCTCAGTTTGCCG 60.039 50.000 22.06 0.00 46.41 5.69
227 233 1.383456 TTGCAAGCTCAGTTTGCCGT 61.383 50.000 22.06 0.00 46.41 5.68
228 234 1.081840 GCAAGCTCAGTTTGCCGTC 60.082 57.895 15.02 0.00 42.40 4.79
229 235 1.576421 CAAGCTCAGTTTGCCGTCC 59.424 57.895 0.00 0.00 0.00 4.79
230 236 1.961277 AAGCTCAGTTTGCCGTCCG 60.961 57.895 0.00 0.00 0.00 4.79
231 237 2.660258 AAGCTCAGTTTGCCGTCCGT 62.660 55.000 0.00 0.00 0.00 4.69
232 238 2.251642 GCTCAGTTTGCCGTCCGTT 61.252 57.895 0.00 0.00 0.00 4.44
233 239 1.860078 CTCAGTTTGCCGTCCGTTC 59.140 57.895 0.00 0.00 0.00 3.95
234 240 1.566018 CTCAGTTTGCCGTCCGTTCC 61.566 60.000 0.00 0.00 0.00 3.62
235 241 1.890041 CAGTTTGCCGTCCGTTCCA 60.890 57.895 0.00 0.00 0.00 3.53
236 242 1.153127 AGTTTGCCGTCCGTTCCAA 60.153 52.632 0.00 0.00 0.00 3.53
237 243 0.748729 AGTTTGCCGTCCGTTCCAAA 60.749 50.000 0.00 0.00 0.00 3.28
238 244 0.317519 GTTTGCCGTCCGTTCCAAAG 60.318 55.000 0.00 0.00 0.00 2.77
239 245 0.748729 TTTGCCGTCCGTTCCAAAGT 60.749 50.000 0.00 0.00 0.00 2.66
240 246 0.748729 TTGCCGTCCGTTCCAAAGTT 60.749 50.000 0.00 0.00 0.00 2.66
276 282 1.533625 CTTTGATGAAGGCCGTTCCA 58.466 50.000 0.00 0.00 37.29 3.53
278 284 1.533625 TTGATGAAGGCCGTTCCAAG 58.466 50.000 0.00 0.00 37.29 3.61
279 285 0.322456 TGATGAAGGCCGTTCCAAGG 60.322 55.000 0.00 0.00 37.29 3.61
280 286 0.035439 GATGAAGGCCGTTCCAAGGA 60.035 55.000 0.00 0.00 37.29 3.36
282 288 0.183971 TGAAGGCCGTTCCAAGGAAA 59.816 50.000 2.55 0.00 35.75 3.13
283 289 1.203001 TGAAGGCCGTTCCAAGGAAAT 60.203 47.619 2.55 0.00 35.75 2.17
284 290 1.893137 GAAGGCCGTTCCAAGGAAATT 59.107 47.619 2.55 0.00 35.75 1.82
285 291 1.256812 AGGCCGTTCCAAGGAAATTG 58.743 50.000 2.55 0.00 38.74 2.32
287 293 1.202348 GGCCGTTCCAAGGAAATTGAG 59.798 52.381 2.55 0.00 41.83 3.02
288 294 1.886542 GCCGTTCCAAGGAAATTGAGT 59.113 47.619 2.55 0.00 41.83 3.41
289 295 2.296190 GCCGTTCCAAGGAAATTGAGTT 59.704 45.455 2.55 0.00 41.83 3.01
290 296 3.857010 GCCGTTCCAAGGAAATTGAGTTG 60.857 47.826 2.55 0.00 41.83 3.16
291 297 3.305335 CCGTTCCAAGGAAATTGAGTTGG 60.305 47.826 2.55 6.62 41.83 3.77
292 298 3.305335 CGTTCCAAGGAAATTGAGTTGGG 60.305 47.826 2.55 0.00 41.83 4.12
293 299 2.247358 TCCAAGGAAATTGAGTTGGGC 58.753 47.619 11.23 0.00 41.83 5.36
294 300 1.276138 CCAAGGAAATTGAGTTGGGCC 59.724 52.381 0.00 0.00 41.83 5.80
296 302 2.368221 CAAGGAAATTGAGTTGGGCCAA 59.632 45.455 16.66 16.66 41.83 4.52
297 303 2.688477 AGGAAATTGAGTTGGGCCAAA 58.312 42.857 22.82 5.53 0.00 3.28
298 304 3.044894 AGGAAATTGAGTTGGGCCAAAA 58.955 40.909 22.82 12.70 0.00 2.44
299 305 3.652387 AGGAAATTGAGTTGGGCCAAAAT 59.348 39.130 22.82 14.59 0.00 1.82
300 306 3.752747 GGAAATTGAGTTGGGCCAAAATG 59.247 43.478 22.82 0.00 0.00 2.32
302 308 2.906691 TTGAGTTGGGCCAAAATGTG 57.093 45.000 22.82 0.00 0.00 3.21
303 309 2.079170 TGAGTTGGGCCAAAATGTGA 57.921 45.000 22.82 0.00 0.00 3.58
305 311 3.772387 TGAGTTGGGCCAAAATGTGATA 58.228 40.909 22.82 0.00 0.00 2.15
308 314 4.352009 AGTTGGGCCAAAATGTGATATGA 58.648 39.130 22.82 0.00 0.00 2.15
309 315 4.964262 AGTTGGGCCAAAATGTGATATGAT 59.036 37.500 22.82 0.00 0.00 2.45
310 316 6.135454 AGTTGGGCCAAAATGTGATATGATA 58.865 36.000 22.82 0.00 0.00 2.15
311 317 6.610830 AGTTGGGCCAAAATGTGATATGATAA 59.389 34.615 22.82 0.00 0.00 1.75
312 318 7.125507 AGTTGGGCCAAAATGTGATATGATAAA 59.874 33.333 22.82 0.00 0.00 1.40
313 319 7.429374 TGGGCCAAAATGTGATATGATAAAA 57.571 32.000 2.13 0.00 0.00 1.52
314 320 7.499292 TGGGCCAAAATGTGATATGATAAAAG 58.501 34.615 2.13 0.00 0.00 2.27
315 321 7.344093 TGGGCCAAAATGTGATATGATAAAAGA 59.656 33.333 2.13 0.00 0.00 2.52
316 322 8.203485 GGGCCAAAATGTGATATGATAAAAGAA 58.797 33.333 4.39 0.00 0.00 2.52
324 330 7.693952 TGTGATATGATAAAAGAAAAGACGGC 58.306 34.615 0.00 0.00 0.00 5.68
325 331 7.335673 TGTGATATGATAAAAGAAAAGACGGCA 59.664 33.333 0.00 0.00 0.00 5.69
326 332 8.345565 GTGATATGATAAAAGAAAAGACGGCAT 58.654 33.333 0.00 0.00 0.00 4.40
327 333 8.902806 TGATATGATAAAAGAAAAGACGGCATT 58.097 29.630 0.00 0.00 0.00 3.56
328 334 9.736023 GATATGATAAAAGAAAAGACGGCATTT 57.264 29.630 0.00 0.00 0.00 2.32
329 335 9.736023 ATATGATAAAAGAAAAGACGGCATTTC 57.264 29.630 10.97 10.97 36.11 2.17
330 336 6.386654 TGATAAAAGAAAAGACGGCATTTCC 58.613 36.000 15.03 0.01 36.44 3.13
331 337 4.664150 AAAAGAAAAGACGGCATTTCCA 57.336 36.364 15.03 0.00 36.44 3.53
333 339 4.440839 AAGAAAAGACGGCATTTCCATC 57.559 40.909 15.03 0.00 36.44 3.51
334 340 2.420022 AGAAAAGACGGCATTTCCATCG 59.580 45.455 15.03 0.00 36.44 3.84
336 342 0.392998 AAGACGGCATTTCCATCGCT 60.393 50.000 0.00 0.00 30.96 4.93
337 343 0.464036 AGACGGCATTTCCATCGCTA 59.536 50.000 0.00 0.00 30.96 4.26
338 344 1.070758 AGACGGCATTTCCATCGCTAT 59.929 47.619 0.00 0.00 30.96 2.97
339 345 1.461127 GACGGCATTTCCATCGCTATC 59.539 52.381 0.00 0.00 34.01 2.08
341 347 1.195448 CGGCATTTCCATCGCTATCAC 59.805 52.381 0.00 0.00 34.01 3.06
342 348 2.498167 GGCATTTCCATCGCTATCACT 58.502 47.619 0.00 0.00 34.01 3.41
343 349 2.225019 GGCATTTCCATCGCTATCACTG 59.775 50.000 0.00 0.00 34.01 3.66
344 350 2.350197 GCATTTCCATCGCTATCACTGC 60.350 50.000 0.00 0.00 0.00 4.40
346 352 2.689553 TTCCATCGCTATCACTGCAA 57.310 45.000 0.00 0.00 0.00 4.08
347 353 2.229675 TCCATCGCTATCACTGCAAG 57.770 50.000 0.00 0.00 42.29 4.01
348 354 1.202568 TCCATCGCTATCACTGCAAGG 60.203 52.381 0.00 0.00 39.30 3.61
350 356 2.133553 CATCGCTATCACTGCAAGGAG 58.866 52.381 0.00 0.00 39.30 3.69
351 357 0.179100 TCGCTATCACTGCAAGGAGC 60.179 55.000 0.00 0.00 45.96 4.70
352 358 1.156645 CGCTATCACTGCAAGGAGCC 61.157 60.000 0.00 0.00 44.83 4.70
353 359 0.817229 GCTATCACTGCAAGGAGCCC 60.817 60.000 0.00 0.00 44.83 5.19
354 360 0.531532 CTATCACTGCAAGGAGCCCG 60.532 60.000 0.00 0.00 44.83 6.13
355 361 1.264749 TATCACTGCAAGGAGCCCGT 61.265 55.000 0.00 0.00 44.83 5.28
356 362 2.129555 ATCACTGCAAGGAGCCCGTT 62.130 55.000 0.00 0.00 44.83 4.44
357 363 1.898574 CACTGCAAGGAGCCCGTTT 60.899 57.895 0.00 0.00 44.83 3.60
358 364 1.600916 ACTGCAAGGAGCCCGTTTC 60.601 57.895 0.00 0.00 44.83 2.78
359 365 2.282180 TGCAAGGAGCCCGTTTCC 60.282 61.111 0.00 0.00 44.83 3.13
360 366 2.034221 GCAAGGAGCCCGTTTCCT 59.966 61.111 0.00 0.00 46.97 3.36
361 367 2.041115 GCAAGGAGCCCGTTTCCTC 61.041 63.158 0.72 0.00 44.24 3.71
362 368 1.374947 CAAGGAGCCCGTTTCCTCA 59.625 57.895 0.72 0.00 44.24 3.86
363 369 0.035056 CAAGGAGCCCGTTTCCTCAT 60.035 55.000 0.72 0.00 44.24 2.90
364 370 0.253327 AAGGAGCCCGTTTCCTCATC 59.747 55.000 0.72 0.00 44.24 2.92
365 371 1.521681 GGAGCCCGTTTCCTCATCG 60.522 63.158 0.00 0.00 0.00 3.84
366 372 1.218316 GAGCCCGTTTCCTCATCGT 59.782 57.895 0.00 0.00 0.00 3.73
367 373 1.079127 AGCCCGTTTCCTCATCGTG 60.079 57.895 0.00 0.00 0.00 4.35
368 374 2.106683 GCCCGTTTCCTCATCGTGG 61.107 63.158 0.00 0.00 0.00 4.94
369 375 2.106683 CCCGTTTCCTCATCGTGGC 61.107 63.158 0.00 0.00 0.00 5.01
370 376 2.452813 CCGTTTCCTCATCGTGGCG 61.453 63.158 0.00 0.00 0.00 5.69
463 470 1.141657 CATCCACACGAATCCATCCCT 59.858 52.381 0.00 0.00 0.00 4.20
465 472 0.179045 CCACACGAATCCATCCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
466 473 0.179045 CACACGAATCCATCCCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
469 476 2.883828 CGAATCCATCCCTCCCCCG 61.884 68.421 0.00 0.00 0.00 5.73
470 477 1.461461 GAATCCATCCCTCCCCCGA 60.461 63.158 0.00 0.00 0.00 5.14
471 478 1.462238 AATCCATCCCTCCCCCGAG 60.462 63.158 0.00 0.00 35.72 4.63
472 479 1.973346 AATCCATCCCTCCCCCGAGA 61.973 60.000 0.00 0.00 38.52 4.04
473 480 2.681273 ATCCATCCCTCCCCCGAGAC 62.681 65.000 0.00 0.00 38.52 3.36
474 481 2.844839 CATCCCTCCCCCGAGACC 60.845 72.222 0.00 0.00 38.52 3.85
475 482 4.541648 ATCCCTCCCCCGAGACCG 62.542 72.222 0.00 0.00 38.52 4.79
848 884 2.440430 TTCTCTCTCCCCGCTCGG 60.440 66.667 0.48 0.48 0.00 4.63
859 895 0.317479 CCCGCTCGGAGTATAAAGGG 59.683 60.000 10.28 6.64 37.50 3.95
860 896 1.038280 CCGCTCGGAGTATAAAGGGT 58.962 55.000 6.90 0.00 37.50 4.34
909 945 0.535102 CGAATTCCCGAATCCCCCAG 60.535 60.000 0.00 0.00 0.00 4.45
910 946 0.178990 GAATTCCCGAATCCCCCAGG 60.179 60.000 0.00 0.00 0.00 4.45
919 955 3.661648 TCCCCCAGGAAAGCCAGC 61.662 66.667 0.00 0.00 40.08 4.85
921 957 4.033776 CCCCAGGAAAGCCAGCGA 62.034 66.667 0.00 0.00 36.29 4.93
922 958 2.747855 CCCAGGAAAGCCAGCGAC 60.748 66.667 0.00 0.00 36.29 5.19
923 959 2.747855 CCAGGAAAGCCAGCGACC 60.748 66.667 0.00 0.00 36.29 4.79
924 960 2.747855 CAGGAAAGCCAGCGACCC 60.748 66.667 0.00 0.00 36.29 4.46
925 961 4.035102 AGGAAAGCCAGCGACCCC 62.035 66.667 0.00 0.00 36.29 4.95
1447 1518 2.653234 ATGTCAGGGATTGATGAGCC 57.347 50.000 0.00 0.00 38.29 4.70
1492 1563 2.207924 CCCCGGGGAGTTAGATCCG 61.208 68.421 38.41 1.08 40.56 4.18
1554 1631 3.744426 GCATTTATGCCTGATTTGCATCC 59.256 43.478 3.30 0.00 46.04 3.51
1556 1633 1.999648 TATGCCTGATTTGCATCCCC 58.000 50.000 0.35 0.00 46.04 4.81
1558 1635 0.685131 TGCCTGATTTGCATCCCCAG 60.685 55.000 0.00 0.00 32.85 4.45
1559 1636 1.397390 GCCTGATTTGCATCCCCAGG 61.397 60.000 16.13 16.13 45.31 4.45
1570 1667 0.106015 ATCCCCAGGGTGCTAATTGC 60.106 55.000 4.22 0.00 43.25 3.56
1619 1716 5.887598 TGCCTAATTCTGTGTTATCTGCATT 59.112 36.000 0.00 0.00 0.00 3.56
1620 1717 7.053498 TGCCTAATTCTGTGTTATCTGCATTA 58.947 34.615 0.00 0.00 0.00 1.90
1629 1726 9.176460 TCTGTGTTATCTGCATTATTTTGATCA 57.824 29.630 0.00 0.00 0.00 2.92
1630 1727 9.961265 CTGTGTTATCTGCATTATTTTGATCAT 57.039 29.630 0.00 0.00 0.00 2.45
1638 1735 7.650504 TCTGCATTATTTTGATCATTTAGCTGC 59.349 33.333 0.00 3.68 0.00 5.25
1640 1737 7.436970 TGCATTATTTTGATCATTTAGCTGCTG 59.563 33.333 13.43 0.00 0.00 4.41
1641 1738 7.095774 GCATTATTTTGATCATTTAGCTGCTGG 60.096 37.037 13.43 0.00 0.00 4.85
1642 1739 5.927281 ATTTTGATCATTTAGCTGCTGGT 57.073 34.783 13.43 0.00 0.00 4.00
1643 1740 5.726980 TTTTGATCATTTAGCTGCTGGTT 57.273 34.783 13.43 0.00 0.00 3.67
1645 1742 5.818136 TTGATCATTTAGCTGCTGGTTAC 57.182 39.130 13.43 0.00 0.00 2.50
1646 1743 5.102953 TGATCATTTAGCTGCTGGTTACT 57.897 39.130 13.43 0.00 0.00 2.24
1647 1744 4.877823 TGATCATTTAGCTGCTGGTTACTG 59.122 41.667 13.43 1.67 0.00 2.74
1648 1745 4.286297 TCATTTAGCTGCTGGTTACTGT 57.714 40.909 13.43 0.00 0.00 3.55
1650 1747 4.455533 TCATTTAGCTGCTGGTTACTGTTG 59.544 41.667 13.43 0.00 0.00 3.33
1652 1749 2.867109 AGCTGCTGGTTACTGTTGAT 57.133 45.000 0.00 0.00 0.00 2.57
1653 1750 2.704572 AGCTGCTGGTTACTGTTGATC 58.295 47.619 0.00 0.00 0.00 2.92
1654 1751 1.740025 GCTGCTGGTTACTGTTGATCC 59.260 52.381 0.00 0.00 0.00 3.36
1655 1752 2.875672 GCTGCTGGTTACTGTTGATCCA 60.876 50.000 0.00 0.00 0.00 3.41
1656 1753 3.411446 CTGCTGGTTACTGTTGATCCAA 58.589 45.455 0.00 0.00 0.00 3.53
1657 1754 3.411446 TGCTGGTTACTGTTGATCCAAG 58.589 45.455 0.00 0.00 0.00 3.61
1658 1755 3.181445 TGCTGGTTACTGTTGATCCAAGT 60.181 43.478 0.00 0.00 0.00 3.16
1659 1756 4.041075 TGCTGGTTACTGTTGATCCAAGTA 59.959 41.667 0.00 0.00 0.00 2.24
1660 1757 5.001232 GCTGGTTACTGTTGATCCAAGTAA 58.999 41.667 7.53 7.53 0.00 2.24
1661 1758 5.648092 GCTGGTTACTGTTGATCCAAGTAAT 59.352 40.000 12.46 0.00 0.00 1.89
1662 1759 6.151144 GCTGGTTACTGTTGATCCAAGTAATT 59.849 38.462 12.46 0.00 0.00 1.40
1663 1760 7.309194 GCTGGTTACTGTTGATCCAAGTAATTT 60.309 37.037 12.46 0.00 0.00 1.82
1664 1761 7.881142 TGGTTACTGTTGATCCAAGTAATTTG 58.119 34.615 12.46 0.00 36.50 2.32
1665 1762 6.806739 GGTTACTGTTGATCCAAGTAATTTGC 59.193 38.462 12.46 3.72 35.37 3.68
1666 1763 7.309194 GGTTACTGTTGATCCAAGTAATTTGCT 60.309 37.037 12.46 0.00 35.37 3.91
1667 1764 8.726988 GTTACTGTTGATCCAAGTAATTTGCTA 58.273 33.333 12.46 0.00 35.37 3.49
1668 1765 7.944729 ACTGTTGATCCAAGTAATTTGCTAT 57.055 32.000 0.00 0.00 35.37 2.97
1669 1766 7.989826 ACTGTTGATCCAAGTAATTTGCTATC 58.010 34.615 0.00 0.00 35.37 2.08
1670 1767 7.831193 ACTGTTGATCCAAGTAATTTGCTATCT 59.169 33.333 0.00 0.00 35.37 1.98
1671 1768 9.330063 CTGTTGATCCAAGTAATTTGCTATCTA 57.670 33.333 0.00 0.00 35.37 1.98
1672 1769 9.330063 TGTTGATCCAAGTAATTTGCTATCTAG 57.670 33.333 0.00 0.00 35.37 2.43
1673 1770 9.331282 GTTGATCCAAGTAATTTGCTATCTAGT 57.669 33.333 0.00 0.00 35.37 2.57
1675 1772 9.982651 TGATCCAAGTAATTTGCTATCTAGTAC 57.017 33.333 0.00 0.00 35.37 2.73
1676 1773 9.130312 GATCCAAGTAATTTGCTATCTAGTACG 57.870 37.037 0.00 0.00 35.37 3.67
1677 1774 8.229253 TCCAAGTAATTTGCTATCTAGTACGA 57.771 34.615 0.00 0.00 35.37 3.43
1689 1786 9.110502 TGCTATCTAGTACGATAATAGGTCATG 57.889 37.037 0.00 0.00 0.00 3.07
1702 1799 9.988815 GATAATAGGTCATGTCTAATTCTGTGT 57.011 33.333 0.00 0.00 0.00 3.72
1708 1805 9.770097 AGGTCATGTCTAATTCTGTGTTATATG 57.230 33.333 0.00 0.00 0.00 1.78
1709 1806 8.499162 GGTCATGTCTAATTCTGTGTTATATGC 58.501 37.037 0.00 0.00 0.00 3.14
1710 1807 9.045223 GTCATGTCTAATTCTGTGTTATATGCA 57.955 33.333 0.00 0.00 0.00 3.96
1711 1808 9.783081 TCATGTCTAATTCTGTGTTATATGCAT 57.217 29.630 3.79 3.79 0.00 3.96
1752 1849 4.041075 TGCTGGTTACTGTTGATCCAAGTA 59.959 41.667 0.00 0.00 0.00 2.24
1753 1850 5.001232 GCTGGTTACTGTTGATCCAAGTAA 58.999 41.667 7.53 7.53 0.00 2.24
1754 1851 5.648092 GCTGGTTACTGTTGATCCAAGTAAT 59.352 40.000 12.46 0.00 0.00 1.89
1755 1852 6.151144 GCTGGTTACTGTTGATCCAAGTAATT 59.849 38.462 12.46 0.00 0.00 1.40
1756 1853 7.309194 GCTGGTTACTGTTGATCCAAGTAATTT 60.309 37.037 12.46 0.00 0.00 1.82
1757 1854 7.881142 TGGTTACTGTTGATCCAAGTAATTTG 58.119 34.615 12.46 0.00 36.50 2.32
1758 1855 6.806739 GGTTACTGTTGATCCAAGTAATTTGC 59.193 38.462 12.46 3.72 35.37 3.68
1759 1856 7.309194 GGTTACTGTTGATCCAAGTAATTTGCT 60.309 37.037 12.46 0.00 35.37 3.91
1760 1857 8.726988 GTTACTGTTGATCCAAGTAATTTGCTA 58.273 33.333 12.46 0.00 35.37 3.49
1761 1858 7.944729 ACTGTTGATCCAAGTAATTTGCTAT 57.055 32.000 0.00 0.00 35.37 2.97
1780 1877 9.511272 TTTGCTATCTAGTACGATAATAGGTCA 57.489 33.333 0.00 0.32 0.00 4.02
1810 1907 6.604735 ATTTGTCCATTACGAAGATGCTAC 57.395 37.500 0.00 0.00 34.88 3.58
1811 1908 5.339008 TTGTCCATTACGAAGATGCTACT 57.661 39.130 0.00 0.00 0.00 2.57
1823 1920 6.483640 ACGAAGATGCTACTTTATCCCAATTC 59.516 38.462 0.00 0.00 0.00 2.17
1831 1928 8.271458 TGCTACTTTATCCCAATTCAGAACATA 58.729 33.333 0.00 0.00 0.00 2.29
1832 1929 9.120538 GCTACTTTATCCCAATTCAGAACATAA 57.879 33.333 0.00 0.00 0.00 1.90
1929 2030 2.403252 AGCTTTAAGGGATCGTGTGG 57.597 50.000 0.00 0.00 0.00 4.17
1994 2095 2.159170 AGCTAGCTTCACCAATCTCGAC 60.159 50.000 12.68 0.00 0.00 4.20
2001 2102 0.458543 CACCAATCTCGACTGTCGGG 60.459 60.000 27.69 25.68 42.83 5.14
2080 2183 0.527565 GCACCTGTTAATGCCCTGTG 59.472 55.000 0.00 0.00 35.73 3.66
2096 2199 7.125792 TGCCCTGTGGAAAAACTAAATTAAA 57.874 32.000 0.00 0.00 0.00 1.52
2204 2315 2.243221 CTCCATTCCTTTGGTCATCCCT 59.757 50.000 0.00 0.00 38.01 4.20
2205 2316 3.459598 CTCCATTCCTTTGGTCATCCCTA 59.540 47.826 0.00 0.00 38.01 3.53
2404 2516 2.622942 AGATGTCCAATTTTGCGTGTGT 59.377 40.909 0.00 0.00 0.00 3.72
2407 2519 4.576216 TGTCCAATTTTGCGTGTGTATT 57.424 36.364 0.00 0.00 0.00 1.89
2412 2524 4.148000 CCAATTTTGCGTGTGTATTGTCAC 59.852 41.667 0.00 0.00 38.63 3.67
2415 2527 4.624336 TTTGCGTGTGTATTGTCACTTT 57.376 36.364 0.00 0.00 38.90 2.66
2483 2595 2.104622 CCAAGTTTGCCATTCTTTGGGT 59.895 45.455 0.00 0.00 46.55 4.51
2507 2619 1.348008 GCACTGGATCTGGGATGGGA 61.348 60.000 0.00 0.00 0.00 4.37
2576 2688 1.203523 CTGACCTTCTCTGTCTTCCCG 59.796 57.143 0.00 0.00 33.83 5.14
2682 2794 2.309613 TGGTGCTTGACAATGAAGCTT 58.690 42.857 0.00 0.00 45.14 3.74
2741 3121 4.080299 ACCCCTTCCTGTAAGCTAATCTTG 60.080 45.833 0.00 0.00 36.25 3.02
2765 3998 9.832445 TTGTCTTGATCTTTACTTTTCTGTAGT 57.168 29.630 0.00 0.00 0.00 2.73
2773 4006 8.988064 TCTTTACTTTTCTGTAGTATCTGCTG 57.012 34.615 0.00 0.00 0.00 4.41
2777 4010 9.944376 TTACTTTTCTGTAGTATCTGCTGAAAT 57.056 29.630 15.56 8.48 40.88 2.17
2778 4011 8.854614 ACTTTTCTGTAGTATCTGCTGAAATT 57.145 30.769 15.56 7.69 40.88 1.82
2779 4012 9.289782 ACTTTTCTGTAGTATCTGCTGAAATTT 57.710 29.630 15.56 0.00 40.88 1.82
2782 4015 9.719355 TTTCTGTAGTATCTGCTGAAATTTACA 57.281 29.630 12.65 4.39 38.35 2.41
2783 4016 8.703604 TCTGTAGTATCTGCTGAAATTTACAC 57.296 34.615 0.00 0.00 0.00 2.90
2784 4017 7.488150 TCTGTAGTATCTGCTGAAATTTACACG 59.512 37.037 0.00 0.00 0.00 4.49
2785 4018 5.470845 AGTATCTGCTGAAATTTACACGC 57.529 39.130 0.00 0.00 0.00 5.34
2786 4019 4.935205 AGTATCTGCTGAAATTTACACGCA 59.065 37.500 0.00 0.00 0.00 5.24
2787 4020 3.811722 TCTGCTGAAATTTACACGCAG 57.188 42.857 17.49 17.49 44.45 5.18
2788 4021 3.811722 CTGCTGAAATTTACACGCAGA 57.188 42.857 18.22 2.32 45.56 4.26
2789 4022 4.145876 CTGCTGAAATTTACACGCAGAA 57.854 40.909 18.22 4.99 45.56 3.02
2790 4023 4.145876 TGCTGAAATTTACACGCAGAAG 57.854 40.909 7.76 0.00 0.00 2.85
2797 4044 6.580791 TGAAATTTACACGCAGAAGTTTATGC 59.419 34.615 1.54 1.54 41.69 3.14
2807 4054 5.521735 CGCAGAAGTTTATGCTCAGTTAGAT 59.478 40.000 9.47 0.00 42.85 1.98
2812 4059 6.054860 AGTTTATGCTCAGTTAGATGTGGT 57.945 37.500 0.00 0.00 0.00 4.16
2817 4064 3.056536 TGCTCAGTTAGATGTGGTCACTC 60.057 47.826 2.66 0.00 0.00 3.51
2923 4170 2.103153 TCCCTGGACAACTCAACTCT 57.897 50.000 0.00 0.00 0.00 3.24
3034 4281 1.732259 CAAATGTACCGTGCTCTCACC 59.268 52.381 0.00 0.00 40.04 4.02
3037 4284 1.288127 GTACCGTGCTCTCACCGTT 59.712 57.895 0.00 0.00 40.04 4.44
3121 4368 4.208686 CGCTACCTCACCGCCTCC 62.209 72.222 0.00 0.00 0.00 4.30
3232 4479 0.542333 TCCCCAACAACGTCAAGTCA 59.458 50.000 0.00 0.00 0.00 3.41
3505 4755 1.751162 CGAGGAGGAAGAGGAGCGT 60.751 63.158 0.00 0.00 0.00 5.07
3527 4777 2.009755 GCGTAGTAGTGGCGATCGC 61.010 63.158 31.52 31.52 41.06 4.58
3528 4778 1.721476 CGTAGTAGTGGCGATCGCG 60.721 63.158 31.76 12.40 43.06 5.87
3552 4814 1.296715 CCAGCTATATGTCCCCCGC 59.703 63.158 0.00 0.00 0.00 6.13
3567 4829 2.259818 CGCTTCAGGTCTGTCGCT 59.740 61.111 0.00 0.00 0.00 4.93
3568 4830 2.091112 CGCTTCAGGTCTGTCGCTG 61.091 63.158 0.00 0.00 0.00 5.18
3576 4838 1.364171 GTCTGTCGCTGTGTCCAGT 59.636 57.895 9.31 0.00 41.02 4.00
3629 4912 0.956633 AGTCGAGGTTGCGTCTTGTA 59.043 50.000 0.00 0.00 0.00 2.41
3671 4955 0.716108 GCTAGTAGTGCGTTGCAGTG 59.284 55.000 9.29 0.00 42.60 3.66
3749 5033 0.109039 GAACTGTCGAGTGCTCTCCC 60.109 60.000 10.08 2.20 37.40 4.30
3785 5078 3.746492 GTCGCCTTGTAAGTTCTGACAAT 59.254 43.478 3.54 0.00 35.13 2.71
3910 5206 7.064847 TGCCTCGTTATTTGTGTATATTTCGTT 59.935 33.333 0.00 0.00 0.00 3.85
3926 5222 1.862806 GTTTGCTCGCTCAGGTGTC 59.137 57.895 0.00 0.00 0.00 3.67
3979 5275 9.897744 GTTTTATCATCTTTGTGAATCTTGTGA 57.102 29.630 0.00 0.00 0.00 3.58
3983 5279 4.818534 TCTTTGTGAATCTTGTGAGTGC 57.181 40.909 0.00 0.00 0.00 4.40
4062 5364 2.017782 CTCGCTCAGGCTACTCTTGTA 58.982 52.381 0.00 0.00 36.09 2.41
4063 5365 2.621055 CTCGCTCAGGCTACTCTTGTAT 59.379 50.000 0.00 0.00 36.09 2.29
4077 5381 9.186323 GCTACTCTTGTATGTAGTATTGTGATG 57.814 37.037 0.00 0.00 38.59 3.07
4093 5397 3.105959 TGATGGATCACTCTCTGGTCA 57.894 47.619 0.00 0.00 30.50 4.02
4094 5398 3.650948 TGATGGATCACTCTCTGGTCAT 58.349 45.455 0.00 0.00 30.50 3.06
4095 5399 3.640498 TGATGGATCACTCTCTGGTCATC 59.360 47.826 0.00 0.00 30.50 2.92
4096 5400 3.395054 TGGATCACTCTCTGGTCATCT 57.605 47.619 0.00 0.00 30.50 2.90
4097 5401 4.526438 TGGATCACTCTCTGGTCATCTA 57.474 45.455 0.00 0.00 30.50 1.98
4098 5402 4.211125 TGGATCACTCTCTGGTCATCTAC 58.789 47.826 0.00 0.00 30.50 2.59
4099 5403 4.079500 TGGATCACTCTCTGGTCATCTACT 60.080 45.833 0.00 0.00 30.50 2.57
4100 5404 4.278170 GGATCACTCTCTGGTCATCTACTG 59.722 50.000 0.00 0.00 30.50 2.74
4101 5405 4.308526 TCACTCTCTGGTCATCTACTGT 57.691 45.455 0.00 0.00 0.00 3.55
4102 5406 5.437191 TCACTCTCTGGTCATCTACTGTA 57.563 43.478 0.00 0.00 0.00 2.74
4103 5407 6.007485 TCACTCTCTGGTCATCTACTGTAT 57.993 41.667 0.00 0.00 0.00 2.29
4104 5408 6.427441 TCACTCTCTGGTCATCTACTGTATT 58.573 40.000 0.00 0.00 0.00 1.89
4105 5409 6.892456 TCACTCTCTGGTCATCTACTGTATTT 59.108 38.462 0.00 0.00 0.00 1.40
4106 5410 6.977502 CACTCTCTGGTCATCTACTGTATTTG 59.022 42.308 0.00 0.00 0.00 2.32
4107 5411 6.665680 ACTCTCTGGTCATCTACTGTATTTGT 59.334 38.462 0.00 0.00 0.00 2.83
4108 5412 7.101652 TCTCTGGTCATCTACTGTATTTGTC 57.898 40.000 0.00 0.00 0.00 3.18
4109 5413 6.663523 TCTCTGGTCATCTACTGTATTTGTCA 59.336 38.462 0.00 0.00 0.00 3.58
4110 5414 6.867550 TCTGGTCATCTACTGTATTTGTCAG 58.132 40.000 0.00 0.00 38.68 3.51
4111 5415 6.437477 TCTGGTCATCTACTGTATTTGTCAGT 59.563 38.462 4.11 4.11 46.10 3.41
4112 5416 7.004555 TGGTCATCTACTGTATTTGTCAGTT 57.995 36.000 3.98 0.00 42.50 3.16
4113 5417 8.129496 TGGTCATCTACTGTATTTGTCAGTTA 57.871 34.615 3.98 0.00 42.50 2.24
4114 5418 8.758829 TGGTCATCTACTGTATTTGTCAGTTAT 58.241 33.333 3.98 0.00 42.50 1.89
4120 5424 8.910944 TCTACTGTATTTGTCAGTTATAGTCCC 58.089 37.037 3.98 0.00 42.50 4.46
4121 5425 7.735326 ACTGTATTTGTCAGTTATAGTCCCT 57.265 36.000 0.00 0.00 42.50 4.20
4122 5426 7.783042 ACTGTATTTGTCAGTTATAGTCCCTC 58.217 38.462 0.00 0.00 42.50 4.30
4123 5427 7.620094 ACTGTATTTGTCAGTTATAGTCCCTCT 59.380 37.037 0.00 0.00 42.50 3.69
4124 5428 7.782049 TGTATTTGTCAGTTATAGTCCCTCTG 58.218 38.462 0.00 0.00 0.00 3.35
4137 5441 1.191535 CCCTCTGTTGGGTCATCGTA 58.808 55.000 0.00 0.00 42.25 3.43
4167 5471 2.912295 TCAGTGAGGATTGTTCCATGGA 59.088 45.455 11.44 11.44 45.30 3.41
4172 5476 4.524328 GTGAGGATTGTTCCATGGAGTTTT 59.476 41.667 15.53 1.65 45.30 2.43
4173 5477 4.523943 TGAGGATTGTTCCATGGAGTTTTG 59.476 41.667 15.53 0.00 45.30 2.44
4180 5484 3.558608 TCCATGGAGTTTTGGGGAATT 57.441 42.857 11.44 0.00 33.62 2.17
4185 5489 3.238597 TGGAGTTTTGGGGAATTGGAAG 58.761 45.455 0.00 0.00 0.00 3.46
4230 5534 4.009675 CGATGGGATTTCCTTGTTCAGAA 58.990 43.478 0.00 0.00 36.20 3.02
4233 5537 5.261040 TGGGATTTCCTTGTTCAGAAGAT 57.739 39.130 0.00 0.00 36.20 2.40
4249 5553 6.959361 TCAGAAGATGCTTTTTAGTTGTGAC 58.041 36.000 0.00 0.00 0.00 3.67
4255 5559 5.743026 TGCTTTTTAGTTGTGACGATGAA 57.257 34.783 0.00 0.00 0.00 2.57
4270 5580 5.348724 TGACGATGAATTTTAGTGTCTGCTC 59.651 40.000 0.00 0.00 0.00 4.26
4276 5586 7.566760 TGAATTTTAGTGTCTGCTCTTTTCA 57.433 32.000 0.00 0.00 0.00 2.69
4280 5590 2.157738 AGTGTCTGCTCTTTTCATGCC 58.842 47.619 0.00 0.00 0.00 4.40
4281 5591 1.135859 GTGTCTGCTCTTTTCATGCCG 60.136 52.381 0.00 0.00 0.00 5.69
4283 5593 1.537202 GTCTGCTCTTTTCATGCCGTT 59.463 47.619 0.00 0.00 0.00 4.44
4321 5631 1.273327 CCTCCCTTTTGCTGCGATTTT 59.727 47.619 0.00 0.00 0.00 1.82
4332 5642 1.127213 CTGCGATTTTGCATTTGCCAC 59.873 47.619 0.00 0.00 45.26 5.01
4341 5651 0.581053 GCATTTGCCACCAAAACACG 59.419 50.000 0.00 0.00 43.58 4.49
4372 5682 5.114764 TGGTGGCTCATTATTCAAGATCA 57.885 39.130 0.00 0.00 0.00 2.92
4385 5695 0.798776 AAGATCAAGCTTGAACCGCG 59.201 50.000 31.55 0.00 41.13 6.46
4392 5702 0.753262 AGCTTGAACCGCGGATAGAT 59.247 50.000 35.90 18.07 0.00 1.98
4401 5711 1.350193 CGCGGATAGATTTCATCGGG 58.650 55.000 0.00 0.00 0.00 5.14
4434 5744 4.900635 AATTGTGGGCTATGTTTCGATC 57.099 40.909 0.00 0.00 0.00 3.69
4438 5748 4.075682 TGTGGGCTATGTTTCGATCAAAA 58.924 39.130 0.00 0.00 0.00 2.44
4439 5749 4.520874 TGTGGGCTATGTTTCGATCAAAAA 59.479 37.500 0.00 0.00 0.00 1.94
4476 5786 4.576330 AATGCTAGCTGGGACTTTTAGT 57.424 40.909 17.23 0.00 0.00 2.24
4477 5787 5.693769 AATGCTAGCTGGGACTTTTAGTA 57.306 39.130 17.23 0.00 0.00 1.82
4478 5788 4.737855 TGCTAGCTGGGACTTTTAGTAG 57.262 45.455 17.23 0.00 0.00 2.57
4479 5789 4.094476 TGCTAGCTGGGACTTTTAGTAGT 58.906 43.478 17.23 0.00 0.00 2.73
4480 5790 4.530946 TGCTAGCTGGGACTTTTAGTAGTT 59.469 41.667 17.23 0.00 0.00 2.24
4481 5791 5.110598 GCTAGCTGGGACTTTTAGTAGTTC 58.889 45.833 7.70 0.00 0.00 3.01
4482 5792 4.554960 AGCTGGGACTTTTAGTAGTTCC 57.445 45.455 0.00 0.00 43.18 3.62
4483 5793 3.263681 AGCTGGGACTTTTAGTAGTTCCC 59.736 47.826 0.00 0.00 42.34 3.97
4484 5794 3.008704 GCTGGGACTTTTAGTAGTTCCCA 59.991 47.826 7.43 7.43 42.34 4.37
4485 5795 4.506095 GCTGGGACTTTTAGTAGTTCCCAA 60.506 45.833 8.94 0.00 42.34 4.12
4486 5796 4.976864 TGGGACTTTTAGTAGTTCCCAAC 58.023 43.478 5.15 0.00 42.34 3.77
4487 5797 3.999001 GGGACTTTTAGTAGTTCCCAACG 59.001 47.826 0.00 0.00 37.78 4.10
4488 5798 4.262592 GGGACTTTTAGTAGTTCCCAACGA 60.263 45.833 0.00 0.00 37.78 3.85
4489 5799 5.299949 GGACTTTTAGTAGTTCCCAACGAA 58.700 41.667 0.00 0.00 36.23 3.85
4490 5800 5.407691 GGACTTTTAGTAGTTCCCAACGAAG 59.592 44.000 0.00 0.00 36.23 3.79
4491 5801 6.165700 ACTTTTAGTAGTTCCCAACGAAGA 57.834 37.500 0.00 0.00 36.23 2.87
4492 5802 6.221659 ACTTTTAGTAGTTCCCAACGAAGAG 58.778 40.000 0.00 0.00 36.23 2.85
4493 5803 6.041296 ACTTTTAGTAGTTCCCAACGAAGAGA 59.959 38.462 0.00 0.00 36.23 3.10
4494 5804 3.938289 AGTAGTTCCCAACGAAGAGAC 57.062 47.619 0.00 0.00 36.23 3.36
4495 5805 2.228343 AGTAGTTCCCAACGAAGAGACG 59.772 50.000 0.00 0.00 36.23 4.18
4506 5816 4.238761 ACGAAGAGACGTTTGATCAAGA 57.761 40.909 8.41 0.00 44.14 3.02
4507 5817 4.810790 ACGAAGAGACGTTTGATCAAGAT 58.189 39.130 8.41 0.00 44.14 2.40
4508 5818 4.859798 ACGAAGAGACGTTTGATCAAGATC 59.140 41.667 8.41 7.75 44.14 2.75
4509 5819 4.859245 CGAAGAGACGTTTGATCAAGATCA 59.141 41.667 8.41 8.61 45.30 2.92
4510 5820 7.010490 ACGAAGAGACGTTTGATCAAGATCAA 61.010 38.462 18.74 18.74 44.64 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.443575 AGAATGATAATGATAATGATAGCGGCC 59.556 37.037 0.00 0.00 0.00 6.13
26 27 9.638176 AGCTTAACAAGGAAGAATGATAATGAT 57.362 29.630 0.00 0.00 0.00 2.45
27 28 9.466497 AAGCTTAACAAGGAAGAATGATAATGA 57.534 29.630 0.00 0.00 0.00 2.57
29 30 8.193438 GCAAGCTTAACAAGGAAGAATGATAAT 58.807 33.333 0.00 0.00 0.00 1.28
30 31 7.394359 AGCAAGCTTAACAAGGAAGAATGATAA 59.606 33.333 0.00 0.00 0.00 1.75
92 98 2.820197 GTTTGGTTCAAGCCCCTCTAAG 59.180 50.000 0.00 0.00 0.00 2.18
94 100 1.271163 CGTTTGGTTCAAGCCCCTCTA 60.271 52.381 0.00 0.00 0.00 2.43
97 103 0.822121 GACGTTTGGTTCAAGCCCCT 60.822 55.000 0.00 0.00 0.00 4.79
99 105 1.534163 GTAGACGTTTGGTTCAAGCCC 59.466 52.381 0.00 0.00 0.00 5.19
100 106 2.479275 GAGTAGACGTTTGGTTCAAGCC 59.521 50.000 0.00 0.00 0.00 4.35
101 107 3.128349 TGAGTAGACGTTTGGTTCAAGC 58.872 45.455 0.00 0.00 0.00 4.01
102 108 3.184581 GCTGAGTAGACGTTTGGTTCAAG 59.815 47.826 0.00 0.00 0.00 3.02
104 110 2.101750 TGCTGAGTAGACGTTTGGTTCA 59.898 45.455 0.00 0.00 0.00 3.18
105 111 2.750948 TGCTGAGTAGACGTTTGGTTC 58.249 47.619 0.00 0.00 0.00 3.62
107 113 2.902705 TTGCTGAGTAGACGTTTGGT 57.097 45.000 0.00 0.00 0.00 3.67
108 114 4.749245 ATTTTGCTGAGTAGACGTTTGG 57.251 40.909 0.00 0.00 0.00 3.28
110 116 4.819630 TGGAATTTTGCTGAGTAGACGTTT 59.180 37.500 0.00 0.00 0.00 3.60
111 117 4.385825 TGGAATTTTGCTGAGTAGACGTT 58.614 39.130 0.00 0.00 0.00 3.99
113 119 3.997021 ACTGGAATTTTGCTGAGTAGACG 59.003 43.478 0.00 0.00 0.00 4.18
114 120 4.997395 TCACTGGAATTTTGCTGAGTAGAC 59.003 41.667 0.00 0.00 0.00 2.59
115 121 5.227569 TCACTGGAATTTTGCTGAGTAGA 57.772 39.130 0.00 0.00 0.00 2.59
117 123 6.003326 TCAATCACTGGAATTTTGCTGAGTA 58.997 36.000 0.00 0.00 0.00 2.59
118 124 4.828939 TCAATCACTGGAATTTTGCTGAGT 59.171 37.500 0.00 0.00 0.00 3.41
119 125 5.381174 TCAATCACTGGAATTTTGCTGAG 57.619 39.130 0.00 0.00 0.00 3.35
120 126 5.988310 ATCAATCACTGGAATTTTGCTGA 57.012 34.783 0.00 0.00 0.00 4.26
121 127 6.160684 TGAATCAATCACTGGAATTTTGCTG 58.839 36.000 0.00 0.00 31.50 4.41
122 128 6.209986 TCTGAATCAATCACTGGAATTTTGCT 59.790 34.615 0.00 0.00 33.47 3.91
123 129 6.392354 TCTGAATCAATCACTGGAATTTTGC 58.608 36.000 0.00 0.00 33.47 3.68
125 131 9.485206 CTTTTCTGAATCAATCACTGGAATTTT 57.515 29.630 0.00 0.00 33.47 1.82
126 132 8.863086 TCTTTTCTGAATCAATCACTGGAATTT 58.137 29.630 0.00 0.00 33.47 1.82
127 133 8.413309 TCTTTTCTGAATCAATCACTGGAATT 57.587 30.769 0.00 0.00 33.47 2.17
128 134 8.413309 TTCTTTTCTGAATCAATCACTGGAAT 57.587 30.769 0.00 0.00 33.47 3.01
129 135 7.822161 TTCTTTTCTGAATCAATCACTGGAA 57.178 32.000 0.00 0.00 33.47 3.53
130 136 7.522725 GCTTTCTTTTCTGAATCAATCACTGGA 60.523 37.037 0.00 0.00 33.47 3.86
131 137 6.585322 GCTTTCTTTTCTGAATCAATCACTGG 59.415 38.462 0.00 0.00 33.47 4.00
132 138 7.143340 TGCTTTCTTTTCTGAATCAATCACTG 58.857 34.615 0.00 0.00 33.47 3.66
133 139 7.281040 TGCTTTCTTTTCTGAATCAATCACT 57.719 32.000 0.00 0.00 33.47 3.41
134 140 8.530269 AATGCTTTCTTTTCTGAATCAATCAC 57.470 30.769 0.00 0.00 33.47 3.06
139 145 9.480053 CCTTTTAATGCTTTCTTTTCTGAATCA 57.520 29.630 0.00 0.00 0.00 2.57
140 146 9.481340 ACCTTTTAATGCTTTCTTTTCTGAATC 57.519 29.630 0.00 0.00 0.00 2.52
141 147 9.836864 AACCTTTTAATGCTTTCTTTTCTGAAT 57.163 25.926 0.00 0.00 0.00 2.57
142 148 9.665719 AAACCTTTTAATGCTTTCTTTTCTGAA 57.334 25.926 0.00 0.00 0.00 3.02
143 149 9.665719 AAAACCTTTTAATGCTTTCTTTTCTGA 57.334 25.926 0.00 0.00 0.00 3.27
144 150 9.706846 CAAAACCTTTTAATGCTTTCTTTTCTG 57.293 29.630 0.00 0.00 0.00 3.02
145 151 8.892723 CCAAAACCTTTTAATGCTTTCTTTTCT 58.107 29.630 0.00 0.00 0.00 2.52
146 152 7.643764 GCCAAAACCTTTTAATGCTTTCTTTTC 59.356 33.333 0.00 0.00 0.00 2.29
147 153 7.416213 GGCCAAAACCTTTTAATGCTTTCTTTT 60.416 33.333 0.00 0.00 0.00 2.27
148 154 6.039270 GGCCAAAACCTTTTAATGCTTTCTTT 59.961 34.615 0.00 0.00 0.00 2.52
149 155 5.530915 GGCCAAAACCTTTTAATGCTTTCTT 59.469 36.000 0.00 0.00 0.00 2.52
150 156 5.063204 GGCCAAAACCTTTTAATGCTTTCT 58.937 37.500 0.00 0.00 0.00 2.52
151 157 4.819088 TGGCCAAAACCTTTTAATGCTTTC 59.181 37.500 0.61 0.00 0.00 2.62
152 158 4.786425 TGGCCAAAACCTTTTAATGCTTT 58.214 34.783 0.61 0.00 0.00 3.51
153 159 4.429854 TGGCCAAAACCTTTTAATGCTT 57.570 36.364 0.61 0.00 0.00 3.91
154 160 4.388485 CTTGGCCAAAACCTTTTAATGCT 58.612 39.130 20.91 0.00 0.00 3.79
155 161 3.058293 GCTTGGCCAAAACCTTTTAATGC 60.058 43.478 20.91 10.82 0.00 3.56
156 162 3.186205 CGCTTGGCCAAAACCTTTTAATG 59.814 43.478 20.91 4.04 0.00 1.90
157 163 3.181459 ACGCTTGGCCAAAACCTTTTAAT 60.181 39.130 20.91 0.00 0.00 1.40
158 164 2.168728 ACGCTTGGCCAAAACCTTTTAA 59.831 40.909 20.91 0.00 0.00 1.52
159 165 1.757699 ACGCTTGGCCAAAACCTTTTA 59.242 42.857 20.91 0.00 0.00 1.52
160 166 0.539518 ACGCTTGGCCAAAACCTTTT 59.460 45.000 20.91 0.00 0.00 2.27
161 167 0.104120 GACGCTTGGCCAAAACCTTT 59.896 50.000 20.91 0.28 0.00 3.11
162 168 1.739667 GACGCTTGGCCAAAACCTT 59.260 52.632 20.91 4.41 0.00 3.50
163 169 2.551912 CGACGCTTGGCCAAAACCT 61.552 57.895 20.91 4.52 0.00 3.50
164 170 2.050442 CGACGCTTGGCCAAAACC 60.050 61.111 20.91 9.84 0.00 3.27
165 171 2.050442 CCGACGCTTGGCCAAAAC 60.050 61.111 20.91 13.67 0.00 2.43
173 179 4.717629 TGAGGTCGCCGACGCTTG 62.718 66.667 11.60 0.00 39.84 4.01
174 180 4.421479 CTGAGGTCGCCGACGCTT 62.421 66.667 11.60 0.00 39.84 4.68
177 183 3.384014 GAGTCTGAGGTCGCCGACG 62.384 68.421 11.60 0.00 42.01 5.12
178 184 1.863662 TTGAGTCTGAGGTCGCCGAC 61.864 60.000 9.15 9.15 0.00 4.79
179 185 1.176619 TTTGAGTCTGAGGTCGCCGA 61.177 55.000 0.00 0.00 0.00 5.54
180 186 0.108615 ATTTGAGTCTGAGGTCGCCG 60.109 55.000 0.00 0.00 0.00 6.46
181 187 1.646189 GATTTGAGTCTGAGGTCGCC 58.354 55.000 0.00 0.00 0.00 5.54
182 188 1.272781 CGATTTGAGTCTGAGGTCGC 58.727 55.000 0.00 0.00 0.00 5.19
183 189 1.272781 GCGATTTGAGTCTGAGGTCG 58.727 55.000 0.00 0.00 0.00 4.79
184 190 2.266554 CTGCGATTTGAGTCTGAGGTC 58.733 52.381 0.00 0.00 0.00 3.85
185 191 1.066573 CCTGCGATTTGAGTCTGAGGT 60.067 52.381 0.00 0.00 0.00 3.85
186 192 1.205655 TCCTGCGATTTGAGTCTGAGG 59.794 52.381 0.00 0.00 0.00 3.86
187 193 2.662006 TCCTGCGATTTGAGTCTGAG 57.338 50.000 0.00 0.00 0.00 3.35
188 194 3.616956 ATTCCTGCGATTTGAGTCTGA 57.383 42.857 0.00 0.00 0.00 3.27
189 195 3.730061 GCAATTCCTGCGATTTGAGTCTG 60.730 47.826 0.00 0.00 42.37 3.51
190 196 2.421424 GCAATTCCTGCGATTTGAGTCT 59.579 45.455 0.00 0.00 42.37 3.24
191 197 2.790387 GCAATTCCTGCGATTTGAGTC 58.210 47.619 0.00 0.00 42.37 3.36
192 198 2.927553 GCAATTCCTGCGATTTGAGT 57.072 45.000 0.00 0.00 42.37 3.41
202 208 3.314553 CAAACTGAGCTTGCAATTCCTG 58.685 45.455 0.00 0.00 0.00 3.86
203 209 2.288640 GCAAACTGAGCTTGCAATTCCT 60.289 45.455 15.06 0.00 46.78 3.36
204 210 2.064014 GCAAACTGAGCTTGCAATTCC 58.936 47.619 15.06 0.00 46.78 3.01
210 216 1.081840 GACGGCAAACTGAGCTTGC 60.082 57.895 11.88 11.88 46.82 4.01
211 217 1.576421 GGACGGCAAACTGAGCTTG 59.424 57.895 0.00 0.00 0.00 4.01
212 218 1.961277 CGGACGGCAAACTGAGCTT 60.961 57.895 0.00 0.00 0.00 3.74
213 219 2.357517 CGGACGGCAAACTGAGCT 60.358 61.111 0.00 0.00 0.00 4.09
214 220 2.171489 GAACGGACGGCAAACTGAGC 62.171 60.000 0.00 0.00 0.00 4.26
215 221 1.566018 GGAACGGACGGCAAACTGAG 61.566 60.000 0.00 0.00 0.00 3.35
216 222 1.595929 GGAACGGACGGCAAACTGA 60.596 57.895 0.00 0.00 0.00 3.41
217 223 1.440938 TTGGAACGGACGGCAAACTG 61.441 55.000 0.00 0.00 0.00 3.16
218 224 0.748729 TTTGGAACGGACGGCAAACT 60.749 50.000 0.00 0.00 0.00 2.66
219 225 0.317519 CTTTGGAACGGACGGCAAAC 60.318 55.000 0.00 0.00 0.00 2.93
220 226 0.748729 ACTTTGGAACGGACGGCAAA 60.749 50.000 0.00 0.00 0.00 3.68
221 227 0.748729 AACTTTGGAACGGACGGCAA 60.749 50.000 0.00 0.00 0.00 4.52
222 228 0.748729 AAACTTTGGAACGGACGGCA 60.749 50.000 0.00 0.00 0.00 5.69
223 229 0.382873 AAAACTTTGGAACGGACGGC 59.617 50.000 0.00 0.00 0.00 5.68
224 230 2.855660 AAAAACTTTGGAACGGACGG 57.144 45.000 0.00 0.00 0.00 4.79
257 263 1.533625 TGGAACGGCCTTCATCAAAG 58.466 50.000 14.39 0.00 37.63 2.77
258 264 1.885887 CTTGGAACGGCCTTCATCAAA 59.114 47.619 14.39 1.72 37.63 2.69
259 265 1.533625 CTTGGAACGGCCTTCATCAA 58.466 50.000 14.39 10.07 37.63 2.57
260 266 0.322456 CCTTGGAACGGCCTTCATCA 60.322 55.000 14.39 4.36 37.63 3.07
261 267 0.035439 TCCTTGGAACGGCCTTCATC 60.035 55.000 14.39 2.24 37.63 2.92
262 268 0.404040 TTCCTTGGAACGGCCTTCAT 59.596 50.000 14.39 0.00 37.63 2.57
263 269 0.183971 TTTCCTTGGAACGGCCTTCA 59.816 50.000 14.39 0.00 37.63 3.02
264 270 1.545841 ATTTCCTTGGAACGGCCTTC 58.454 50.000 0.00 3.66 37.63 3.46
265 271 1.618343 CAATTTCCTTGGAACGGCCTT 59.382 47.619 0.00 0.00 37.63 4.35
266 272 1.203001 TCAATTTCCTTGGAACGGCCT 60.203 47.619 0.00 0.00 37.63 5.19
267 273 1.202348 CTCAATTTCCTTGGAACGGCC 59.798 52.381 0.98 0.00 35.43 6.13
268 274 1.886542 ACTCAATTTCCTTGGAACGGC 59.113 47.619 0.98 0.00 35.43 5.68
269 275 3.305335 CCAACTCAATTTCCTTGGAACGG 60.305 47.826 0.98 0.00 36.06 4.44
270 276 3.305335 CCCAACTCAATTTCCTTGGAACG 60.305 47.826 0.98 0.00 36.06 3.95
272 278 2.632512 GCCCAACTCAATTTCCTTGGAA 59.367 45.455 0.00 0.00 36.06 3.53
273 279 2.247358 GCCCAACTCAATTTCCTTGGA 58.753 47.619 6.41 0.00 36.06 3.53
274 280 1.276138 GGCCCAACTCAATTTCCTTGG 59.724 52.381 0.00 0.00 35.43 3.61
275 281 1.969923 TGGCCCAACTCAATTTCCTTG 59.030 47.619 0.00 0.00 36.09 3.61
276 282 2.397044 TGGCCCAACTCAATTTCCTT 57.603 45.000 0.00 0.00 0.00 3.36
278 284 3.483808 TTTTGGCCCAACTCAATTTCC 57.516 42.857 0.00 0.00 0.00 3.13
279 285 4.213906 CACATTTTGGCCCAACTCAATTTC 59.786 41.667 0.00 0.00 0.00 2.17
280 286 4.136051 CACATTTTGGCCCAACTCAATTT 58.864 39.130 0.00 0.00 0.00 1.82
282 288 2.971330 TCACATTTTGGCCCAACTCAAT 59.029 40.909 0.00 0.00 0.00 2.57
283 289 2.392662 TCACATTTTGGCCCAACTCAA 58.607 42.857 0.00 0.00 0.00 3.02
284 290 2.079170 TCACATTTTGGCCCAACTCA 57.921 45.000 0.00 0.00 0.00 3.41
285 291 4.402155 TCATATCACATTTTGGCCCAACTC 59.598 41.667 0.00 0.00 0.00 3.01
287 293 4.734398 TCATATCACATTTTGGCCCAAC 57.266 40.909 0.00 0.00 0.00 3.77
288 294 7.429374 TTTATCATATCACATTTTGGCCCAA 57.571 32.000 0.00 0.00 0.00 4.12
289 295 7.344093 TCTTTTATCATATCACATTTTGGCCCA 59.656 33.333 0.00 0.00 0.00 5.36
290 296 7.725251 TCTTTTATCATATCACATTTTGGCCC 58.275 34.615 0.00 0.00 0.00 5.80
291 297 9.598517 TTTCTTTTATCATATCACATTTTGGCC 57.401 29.630 0.00 0.00 0.00 5.36
298 304 8.345565 GCCGTCTTTTCTTTTATCATATCACAT 58.654 33.333 0.00 0.00 0.00 3.21
299 305 7.335673 TGCCGTCTTTTCTTTTATCATATCACA 59.664 33.333 0.00 0.00 0.00 3.58
300 306 7.693952 TGCCGTCTTTTCTTTTATCATATCAC 58.306 34.615 0.00 0.00 0.00 3.06
302 308 9.736023 AAATGCCGTCTTTTCTTTTATCATATC 57.264 29.630 0.00 0.00 0.00 1.63
303 309 9.736023 GAAATGCCGTCTTTTCTTTTATCATAT 57.264 29.630 0.00 0.00 35.01 1.78
305 311 7.035612 GGAAATGCCGTCTTTTCTTTTATCAT 58.964 34.615 5.04 0.00 36.88 2.45
308 314 6.339587 TGGAAATGCCGTCTTTTCTTTTAT 57.660 33.333 5.04 0.00 40.66 1.40
309 315 5.776173 TGGAAATGCCGTCTTTTCTTTTA 57.224 34.783 5.04 0.00 40.66 1.52
310 316 4.664150 TGGAAATGCCGTCTTTTCTTTT 57.336 36.364 5.04 0.00 40.66 2.27
311 317 4.871933 ATGGAAATGCCGTCTTTTCTTT 57.128 36.364 5.04 0.00 40.66 2.52
320 326 1.202639 TGATAGCGATGGAAATGCCGT 60.203 47.619 0.00 0.00 40.66 5.68
321 327 1.195448 GTGATAGCGATGGAAATGCCG 59.805 52.381 0.00 0.00 40.66 5.69
322 328 2.225019 CAGTGATAGCGATGGAAATGCC 59.775 50.000 0.00 0.00 37.10 4.40
323 329 2.350197 GCAGTGATAGCGATGGAAATGC 60.350 50.000 0.00 0.00 0.00 3.56
324 330 2.874086 TGCAGTGATAGCGATGGAAATG 59.126 45.455 0.00 0.00 33.85 2.32
325 331 3.198409 TGCAGTGATAGCGATGGAAAT 57.802 42.857 0.00 0.00 33.85 2.17
326 332 2.689553 TGCAGTGATAGCGATGGAAA 57.310 45.000 0.00 0.00 33.85 3.13
327 333 2.554142 CTTGCAGTGATAGCGATGGAA 58.446 47.619 0.00 0.00 33.85 3.53
328 334 1.202568 CCTTGCAGTGATAGCGATGGA 60.203 52.381 0.00 0.00 33.85 3.41
329 335 1.202568 TCCTTGCAGTGATAGCGATGG 60.203 52.381 0.00 0.00 33.85 3.51
330 336 2.133553 CTCCTTGCAGTGATAGCGATG 58.866 52.381 0.00 0.00 33.85 3.84
331 337 1.539929 GCTCCTTGCAGTGATAGCGAT 60.540 52.381 0.00 0.00 42.31 4.58
333 339 1.156645 GGCTCCTTGCAGTGATAGCG 61.157 60.000 0.00 0.00 45.15 4.26
334 340 0.817229 GGGCTCCTTGCAGTGATAGC 60.817 60.000 0.00 0.00 45.15 2.97
336 342 1.264749 ACGGGCTCCTTGCAGTGATA 61.265 55.000 0.00 0.00 45.15 2.15
337 343 2.129555 AACGGGCTCCTTGCAGTGAT 62.130 55.000 0.00 0.00 45.15 3.06
338 344 2.337879 AAACGGGCTCCTTGCAGTGA 62.338 55.000 0.00 0.00 45.15 3.41
339 345 1.856265 GAAACGGGCTCCTTGCAGTG 61.856 60.000 0.00 0.00 45.15 3.66
341 347 2.335712 GGAAACGGGCTCCTTGCAG 61.336 63.158 0.00 0.00 45.15 4.41
342 348 2.282180 GGAAACGGGCTCCTTGCA 60.282 61.111 0.00 0.00 45.15 4.08
343 349 2.034221 AGGAAACGGGCTCCTTGC 59.966 61.111 0.00 0.00 40.61 4.01
344 350 0.035056 ATGAGGAAACGGGCTCCTTG 60.035 55.000 3.99 0.00 43.65 3.61
346 352 1.908483 GATGAGGAAACGGGCTCCT 59.092 57.895 2.17 2.17 46.40 3.69
347 353 1.521681 CGATGAGGAAACGGGCTCC 60.522 63.158 0.00 0.00 0.00 4.70
348 354 1.084370 CACGATGAGGAAACGGGCTC 61.084 60.000 0.00 0.00 0.00 4.70
350 356 2.106683 CCACGATGAGGAAACGGGC 61.107 63.158 0.00 0.00 0.00 6.13
351 357 2.106683 GCCACGATGAGGAAACGGG 61.107 63.158 0.00 0.00 0.00 5.28
352 358 2.452813 CGCCACGATGAGGAAACGG 61.453 63.158 0.00 0.00 0.00 4.44
353 359 1.683790 GACGCCACGATGAGGAAACG 61.684 60.000 0.00 0.00 0.00 3.60
354 360 1.359459 GGACGCCACGATGAGGAAAC 61.359 60.000 0.00 0.00 0.00 2.78
355 361 1.079405 GGACGCCACGATGAGGAAA 60.079 57.895 0.00 0.00 0.00 3.13
356 362 2.577059 GGACGCCACGATGAGGAA 59.423 61.111 0.00 0.00 0.00 3.36
357 363 3.822192 CGGACGCCACGATGAGGA 61.822 66.667 0.00 0.00 0.00 3.71
421 428 1.379443 ACGAGGCCTACCGATGACA 60.379 57.895 19.78 0.00 42.76 3.58
430 437 2.122989 GGATGGGGACGAGGCCTA 60.123 66.667 4.42 0.00 0.00 3.93
433 440 3.399181 TGTGGATGGGGACGAGGC 61.399 66.667 0.00 0.00 0.00 4.70
434 441 2.584608 GTGTGGATGGGGACGAGG 59.415 66.667 0.00 0.00 0.00 4.63
469 476 4.459089 GCAGGCAGGGTCGGTCTC 62.459 72.222 0.00 0.00 0.00 3.36
475 482 4.729918 CACCTGGCAGGCAGGGTC 62.730 72.222 38.80 3.16 43.89 4.46
599 614 2.513026 GATGAGCGGATGGGATCGGG 62.513 65.000 0.00 0.00 0.00 5.14
668 683 3.497031 GGCTGGCGTAACCGAAGC 61.497 66.667 0.00 0.00 43.94 3.86
829 856 2.776913 CGAGCGGGGAGAGAGAACC 61.777 68.421 0.00 0.00 0.00 3.62
830 857 2.776913 CCGAGCGGGGAGAGAGAAC 61.777 68.421 0.00 0.00 0.00 3.01
831 858 2.440430 CCGAGCGGGGAGAGAGAA 60.440 66.667 0.00 0.00 0.00 2.87
848 884 4.633126 GGTGTTTTCCGACCCTTTATACTC 59.367 45.833 0.00 0.00 0.00 2.59
872 908 1.021968 CGGATTTCGAAATGGGGGAC 58.978 55.000 27.27 11.70 42.43 4.46
1447 1518 1.134699 TGAGCCCAGATCTAAACGCTG 60.135 52.381 9.10 0.00 0.00 5.18
1475 1546 1.047034 AACGGATCTAACTCCCCGGG 61.047 60.000 15.80 15.80 45.63 5.73
1492 1563 8.281212 AGTAATGACAACCTGATATTTGGAAC 57.719 34.615 2.48 0.00 0.00 3.62
1549 1626 0.106015 AATTAGCACCCTGGGGATGC 60.106 55.000 18.88 18.44 40.24 3.91
1619 1716 7.408756 AACCAGCAGCTAAATGATCAAAATA 57.591 32.000 0.00 0.00 0.00 1.40
1620 1717 5.927281 ACCAGCAGCTAAATGATCAAAAT 57.073 34.783 0.00 0.00 0.00 1.82
1623 1720 5.355071 CAGTAACCAGCAGCTAAATGATCAA 59.645 40.000 0.00 0.00 0.00 2.57
1626 1723 4.848357 ACAGTAACCAGCAGCTAAATGAT 58.152 39.130 0.00 0.00 0.00 2.45
1627 1724 4.286297 ACAGTAACCAGCAGCTAAATGA 57.714 40.909 0.00 0.00 0.00 2.57
1628 1725 4.455533 TCAACAGTAACCAGCAGCTAAATG 59.544 41.667 0.00 0.00 0.00 2.32
1629 1726 4.651778 TCAACAGTAACCAGCAGCTAAAT 58.348 39.130 0.00 0.00 0.00 1.40
1630 1727 4.079980 TCAACAGTAACCAGCAGCTAAA 57.920 40.909 0.00 0.00 0.00 1.85
1631 1728 3.762407 TCAACAGTAACCAGCAGCTAA 57.238 42.857 0.00 0.00 0.00 3.09
1632 1729 3.369471 GGATCAACAGTAACCAGCAGCTA 60.369 47.826 0.00 0.00 0.00 3.32
1634 1731 1.740025 GGATCAACAGTAACCAGCAGC 59.260 52.381 0.00 0.00 0.00 5.25
1638 1735 7.687941 AATTACTTGGATCAACAGTAACCAG 57.312 36.000 10.99 0.00 32.16 4.00
1640 1737 6.806739 GCAAATTACTTGGATCAACAGTAACC 59.193 38.462 10.99 0.00 35.38 2.85
1641 1738 7.593825 AGCAAATTACTTGGATCAACAGTAAC 58.406 34.615 10.99 2.46 35.38 2.50
1642 1739 7.759489 AGCAAATTACTTGGATCAACAGTAA 57.241 32.000 11.11 11.11 35.38 2.24
1643 1740 9.109393 GATAGCAAATTACTTGGATCAACAGTA 57.891 33.333 0.00 0.00 35.38 2.74
1645 1742 8.218338 AGATAGCAAATTACTTGGATCAACAG 57.782 34.615 0.00 0.00 35.38 3.16
1646 1743 9.330063 CTAGATAGCAAATTACTTGGATCAACA 57.670 33.333 0.00 0.00 35.38 3.33
1647 1744 9.331282 ACTAGATAGCAAATTACTTGGATCAAC 57.669 33.333 0.00 0.00 35.38 3.18
1650 1747 9.130312 CGTACTAGATAGCAAATTACTTGGATC 57.870 37.037 0.00 0.00 35.38 3.36
1652 1749 8.229253 TCGTACTAGATAGCAAATTACTTGGA 57.771 34.615 0.00 0.00 35.38 3.53
1661 1758 9.511272 TGACCTATTATCGTACTAGATAGCAAA 57.489 33.333 0.00 0.00 34.90 3.68
1662 1759 9.682465 ATGACCTATTATCGTACTAGATAGCAA 57.318 33.333 0.00 0.00 34.90 3.91
1663 1760 9.110502 CATGACCTATTATCGTACTAGATAGCA 57.889 37.037 0.00 0.00 34.90 3.49
1664 1761 9.111613 ACATGACCTATTATCGTACTAGATAGC 57.888 37.037 0.00 0.00 34.90 2.97
1674 1771 8.861086 ACAGAATTAGACATGACCTATTATCGT 58.139 33.333 0.00 0.00 0.00 3.73
1675 1772 9.133627 CACAGAATTAGACATGACCTATTATCG 57.866 37.037 0.00 0.00 0.00 2.92
1676 1773 9.988815 ACACAGAATTAGACATGACCTATTATC 57.011 33.333 0.00 0.58 0.00 1.75
1682 1779 9.770097 CATATAACACAGAATTAGACATGACCT 57.230 33.333 0.00 0.00 0.00 3.85
1684 1781 9.045223 TGCATATAACACAGAATTAGACATGAC 57.955 33.333 0.00 0.00 0.00 3.06
1706 1803 9.826574 AGCAGTTAAATGATCAAATTAATGCAT 57.173 25.926 26.68 18.99 32.17 3.96
1707 1804 9.089601 CAGCAGTTAAATGATCAAATTAATGCA 57.910 29.630 26.68 0.00 32.17 3.96
1708 1805 8.545420 CCAGCAGTTAAATGATCAAATTAATGC 58.455 33.333 23.09 23.09 0.00 3.56
1709 1806 9.590451 ACCAGCAGTTAAATGATCAAATTAATG 57.410 29.630 7.18 14.92 0.00 1.90
1754 1851 9.511272 TGACCTATTATCGTACTAGATAGCAAA 57.489 33.333 0.00 0.00 34.90 3.68
1755 1852 9.682465 ATGACCTATTATCGTACTAGATAGCAA 57.318 33.333 0.00 0.00 34.90 3.91
1756 1853 9.110502 CATGACCTATTATCGTACTAGATAGCA 57.889 37.037 0.00 0.00 34.90 3.49
1757 1854 9.111613 ACATGACCTATTATCGTACTAGATAGC 57.888 37.037 0.00 0.00 34.90 2.97
1759 1856 9.610705 GGACATGACCTATTATCGTACTAGATA 57.389 37.037 6.99 0.00 32.39 1.98
1760 1857 8.107729 TGGACATGACCTATTATCGTACTAGAT 58.892 37.037 15.29 0.00 34.79 1.98
1761 1858 7.455891 TGGACATGACCTATTATCGTACTAGA 58.544 38.462 15.29 0.00 0.00 2.43
1772 1869 5.579047 TGGACAAATTGGACATGACCTATT 58.421 37.500 15.58 15.58 37.07 1.73
1780 1877 5.943416 TCTTCGTAATGGACAAATTGGACAT 59.057 36.000 0.00 0.00 0.00 3.06
1811 1908 9.973661 TCTTCTTATGTTCTGAATTGGGATAAA 57.026 29.630 0.00 0.00 0.00 1.40
1823 1920 5.350914 CAGCTTCCACTCTTCTTATGTTCTG 59.649 44.000 0.00 0.00 0.00 3.02
1831 1928 2.569404 CCTACCAGCTTCCACTCTTCTT 59.431 50.000 0.00 0.00 0.00 2.52
1832 1929 2.183679 CCTACCAGCTTCCACTCTTCT 58.816 52.381 0.00 0.00 0.00 2.85
1833 1930 2.180276 TCCTACCAGCTTCCACTCTTC 58.820 52.381 0.00 0.00 0.00 2.87
1994 2095 3.226777 AGAATATCAGTCCTCCCGACAG 58.773 50.000 0.00 0.00 44.66 3.51
2030 2133 0.597568 TCAAGCAAGCCAATCCAACG 59.402 50.000 0.00 0.00 0.00 4.10
2096 2199 2.026822 CCCAGCTCAGGTATGACAGTTT 60.027 50.000 0.00 0.00 0.00 2.66
2144 2255 7.878621 ATTCATCATTTAGATAGGGACTCCA 57.121 36.000 0.00 0.00 41.75 3.86
2245 2356 6.898041 TCAGTAATGCTACACAAACATGTTC 58.102 36.000 12.39 0.00 33.85 3.18
2430 2542 5.551305 AAGGAAGCAAATAAAGCCAAACT 57.449 34.783 0.00 0.00 0.00 2.66
2433 2545 6.412362 TGTAAAGGAAGCAAATAAAGCCAA 57.588 33.333 0.00 0.00 0.00 4.52
2483 2595 1.997311 CCCAGATCCAGTGCCTCCA 60.997 63.158 0.00 0.00 0.00 3.86
2507 2619 9.292751 TCCCTAATCTTAGAAATAAGAAGGGTT 57.707 33.333 22.59 9.29 45.68 4.11
2576 2688 2.484889 GTGTCTGAGACCTTTGGTGAC 58.515 52.381 10.52 0.00 35.25 3.67
2763 3996 4.935205 TGCGTGTAAATTTCAGCAGATACT 59.065 37.500 0.00 0.00 0.00 2.12
2764 3997 5.216566 TGCGTGTAAATTTCAGCAGATAC 57.783 39.130 0.00 0.00 0.00 2.24
2770 4003 4.147219 ACTTCTGCGTGTAAATTTCAGC 57.853 40.909 0.00 0.00 0.00 4.26
2773 4006 6.801862 AGCATAAACTTCTGCGTGTAAATTTC 59.198 34.615 0.00 0.00 43.17 2.17
2777 4010 4.752604 TGAGCATAAACTTCTGCGTGTAAA 59.247 37.500 0.00 0.00 43.17 2.01
2778 4011 4.311606 TGAGCATAAACTTCTGCGTGTAA 58.688 39.130 0.00 0.00 43.17 2.41
2779 4012 3.920446 TGAGCATAAACTTCTGCGTGTA 58.080 40.909 0.00 0.00 43.17 2.90
2780 4013 2.738846 CTGAGCATAAACTTCTGCGTGT 59.261 45.455 0.00 0.00 43.17 4.49
2781 4014 2.738846 ACTGAGCATAAACTTCTGCGTG 59.261 45.455 0.00 0.00 43.17 5.34
2782 4015 3.045601 ACTGAGCATAAACTTCTGCGT 57.954 42.857 0.00 0.00 43.17 5.24
2783 4016 4.864806 TCTAACTGAGCATAAACTTCTGCG 59.135 41.667 0.00 0.00 43.17 5.18
2784 4017 6.314896 ACATCTAACTGAGCATAAACTTCTGC 59.685 38.462 0.00 0.00 38.69 4.26
2785 4018 7.201591 CCACATCTAACTGAGCATAAACTTCTG 60.202 40.741 0.00 0.00 0.00 3.02
2786 4019 6.820656 CCACATCTAACTGAGCATAAACTTCT 59.179 38.462 0.00 0.00 0.00 2.85
2787 4020 6.595716 ACCACATCTAACTGAGCATAAACTTC 59.404 38.462 0.00 0.00 0.00 3.01
2788 4021 6.476378 ACCACATCTAACTGAGCATAAACTT 58.524 36.000 0.00 0.00 0.00 2.66
2789 4022 6.054860 ACCACATCTAACTGAGCATAAACT 57.945 37.500 0.00 0.00 0.00 2.66
2790 4023 5.874810 TGACCACATCTAACTGAGCATAAAC 59.125 40.000 0.00 0.00 0.00 2.01
2797 4044 4.790765 TGAGTGACCACATCTAACTGAG 57.209 45.455 2.78 0.00 0.00 3.35
2807 4054 3.402110 CAAAGCTGTATGAGTGACCACA 58.598 45.455 2.78 0.00 0.00 4.17
2812 4059 4.623932 AGAACCAAAGCTGTATGAGTGA 57.376 40.909 0.00 0.00 0.00 3.41
2817 4064 5.801947 GCATTGTTAGAACCAAAGCTGTATG 59.198 40.000 0.00 0.00 0.00 2.39
2923 4170 3.895025 GCAAGCTTGCGGAGATCA 58.105 55.556 33.75 0.00 45.11 2.92
2944 4191 4.408921 AGACGTGGGAATGGAATGAGATTA 59.591 41.667 0.00 0.00 0.00 1.75
2953 4200 0.544357 AGTGGAGACGTGGGAATGGA 60.544 55.000 0.00 0.00 0.00 3.41
3121 4368 4.082523 TTCCCTCGGAAGCAGGCG 62.083 66.667 0.00 0.00 36.71 5.52
3232 4479 3.726517 GGCATGTCGCACACGCTT 61.727 61.111 7.15 0.00 45.17 4.68
3505 4755 1.371337 ATCGCCACTACTACGCGTCA 61.371 55.000 18.63 0.55 45.85 4.35
3529 4779 0.247736 GGGACATATAGCTGGCGGAG 59.752 60.000 0.00 0.00 0.00 4.63
3531 4781 1.296715 GGGGACATATAGCTGGCGG 59.703 63.158 0.00 0.00 0.00 6.13
3533 4783 1.296715 CGGGGGACATATAGCTGGC 59.703 63.158 0.00 0.00 0.00 4.85
3552 4814 0.032678 ACACAGCGACAGACCTGAAG 59.967 55.000 3.76 0.00 33.40 3.02
3567 4829 2.419990 CCACAAACTCTCACTGGACACA 60.420 50.000 0.00 0.00 0.00 3.72
3568 4830 2.213499 CCACAAACTCTCACTGGACAC 58.787 52.381 0.00 0.00 0.00 3.67
3576 4838 2.777692 AGGAGGAAACCACAAACTCTCA 59.222 45.455 0.00 0.00 0.00 3.27
3577 4839 3.142174 CAGGAGGAAACCACAAACTCTC 58.858 50.000 0.00 0.00 0.00 3.20
3578 4840 2.509964 ACAGGAGGAAACCACAAACTCT 59.490 45.455 0.00 0.00 0.00 3.24
3580 4842 2.654863 CACAGGAGGAAACCACAAACT 58.345 47.619 0.00 0.00 0.00 2.66
3671 4955 1.398390 GATGGATGCGGAACAAGACAC 59.602 52.381 0.00 0.00 0.00 3.67
3749 5033 2.202362 CGACGACGACCAGCTCAG 60.202 66.667 0.00 0.00 42.66 3.35
3758 5044 0.311790 AACTTACAAGGCGACGACGA 59.688 50.000 12.29 0.00 42.66 4.20
3759 5045 0.706729 GAACTTACAAGGCGACGACG 59.293 55.000 2.12 2.12 42.93 5.12
3785 5078 7.463648 GCTGAAGCGAACGACTAACAATAATAA 60.464 37.037 0.00 0.00 0.00 1.40
3867 5163 2.029110 AGGCAAAAACATTCCGACATGG 60.029 45.455 0.00 0.00 40.09 3.66
3868 5164 3.244976 GAGGCAAAAACATTCCGACATG 58.755 45.455 0.00 0.00 0.00 3.21
3910 5206 2.159819 GAGGACACCTGAGCGAGCAA 62.160 60.000 0.00 0.00 31.76 3.91
3926 5222 4.192317 GCTGGTACCAAGAATACAAGAGG 58.808 47.826 17.11 0.07 0.00 3.69
3957 5253 7.148356 GCACTCACAAGATTCACAAAGATGATA 60.148 37.037 0.00 0.00 0.00 2.15
3958 5254 6.349115 GCACTCACAAGATTCACAAAGATGAT 60.349 38.462 0.00 0.00 0.00 2.45
4021 5323 5.337251 CGAGCATACGCATATACGCTATTAG 59.663 44.000 0.00 0.00 42.27 1.73
4024 5326 3.618698 CGAGCATACGCATATACGCTAT 58.381 45.455 0.00 0.00 42.27 2.97
4077 5381 4.278170 CAGTAGATGACCAGAGAGTGATCC 59.722 50.000 0.00 0.00 31.47 3.36
4094 5398 8.910944 GGGACTATAACTGACAAATACAGTAGA 58.089 37.037 0.00 0.00 46.01 2.59
4095 5399 8.915036 AGGGACTATAACTGACAAATACAGTAG 58.085 37.037 0.00 0.00 42.09 2.57
4096 5400 8.834004 AGGGACTATAACTGACAAATACAGTA 57.166 34.615 0.00 0.00 42.09 2.74
4097 5401 7.620094 AGAGGGACTATAACTGACAAATACAGT 59.380 37.037 0.00 0.00 45.00 3.55
4098 5402 7.923344 CAGAGGGACTATAACTGACAAATACAG 59.077 40.741 0.00 0.00 41.55 2.74
4099 5403 7.399191 ACAGAGGGACTATAACTGACAAATACA 59.601 37.037 0.00 0.00 41.55 2.29
4100 5404 7.783042 ACAGAGGGACTATAACTGACAAATAC 58.217 38.462 0.00 0.00 41.55 1.89
4101 5405 7.973048 ACAGAGGGACTATAACTGACAAATA 57.027 36.000 0.00 0.00 41.55 1.40
4102 5406 6.875972 ACAGAGGGACTATAACTGACAAAT 57.124 37.500 0.00 0.00 41.55 2.32
4103 5407 6.464222 CAACAGAGGGACTATAACTGACAAA 58.536 40.000 0.00 0.00 41.55 2.83
4104 5408 5.046591 CCAACAGAGGGACTATAACTGACAA 60.047 44.000 0.00 0.00 41.55 3.18
4105 5409 4.466370 CCAACAGAGGGACTATAACTGACA 59.534 45.833 0.00 0.00 41.55 3.58
4106 5410 5.012328 CCAACAGAGGGACTATAACTGAC 57.988 47.826 0.00 0.00 41.55 3.51
4119 5423 1.471676 GCTACGATGACCCAACAGAGG 60.472 57.143 0.00 0.00 0.00 3.69
4120 5424 1.204704 TGCTACGATGACCCAACAGAG 59.795 52.381 0.00 0.00 0.00 3.35
4121 5425 1.204704 CTGCTACGATGACCCAACAGA 59.795 52.381 0.00 0.00 0.00 3.41
4122 5426 1.204704 TCTGCTACGATGACCCAACAG 59.795 52.381 0.00 0.00 0.00 3.16
4123 5427 1.204704 CTCTGCTACGATGACCCAACA 59.795 52.381 0.00 0.00 0.00 3.33
4124 5428 1.927895 CTCTGCTACGATGACCCAAC 58.072 55.000 0.00 0.00 0.00 3.77
4130 5434 2.095461 ACTGAAGCTCTGCTACGATGA 58.905 47.619 0.00 0.00 38.25 2.92
4137 5441 1.570803 ATCCTCACTGAAGCTCTGCT 58.429 50.000 0.00 0.00 42.56 4.24
4167 5471 2.688477 TGCTTCCAATTCCCCAAAACT 58.312 42.857 0.00 0.00 0.00 2.66
4172 5476 0.709397 TCCATGCTTCCAATTCCCCA 59.291 50.000 0.00 0.00 0.00 4.96
4173 5477 1.482182 GTTCCATGCTTCCAATTCCCC 59.518 52.381 0.00 0.00 0.00 4.81
4180 5484 1.675310 CGGCTGTTCCATGCTTCCA 60.675 57.895 0.00 0.00 34.01 3.53
4185 5489 3.818787 CAGCCGGCTGTTCCATGC 61.819 66.667 42.09 6.57 39.10 4.06
4194 5498 1.141881 CATCGAGTTACAGCCGGCT 59.858 57.895 27.08 27.08 0.00 5.52
4197 5501 0.389391 ATCCCATCGAGTTACAGCCG 59.611 55.000 0.00 0.00 0.00 5.52
4198 5502 2.622064 AATCCCATCGAGTTACAGCC 57.378 50.000 0.00 0.00 0.00 4.85
4199 5503 2.872858 GGAAATCCCATCGAGTTACAGC 59.127 50.000 0.00 0.00 29.34 4.40
4230 5534 5.700832 TCATCGTCACAACTAAAAAGCATCT 59.299 36.000 0.00 0.00 0.00 2.90
4233 5537 5.743026 TTCATCGTCACAACTAAAAAGCA 57.257 34.783 0.00 0.00 0.00 3.91
4249 5553 6.414408 AAGAGCAGACACTAAAATTCATCG 57.586 37.500 0.00 0.00 0.00 3.84
4255 5559 6.385033 GCATGAAAAGAGCAGACACTAAAAT 58.615 36.000 0.00 0.00 0.00 1.82
4270 5580 3.129113 TGATCCATCAACGGCATGAAAAG 59.871 43.478 0.00 0.00 33.08 2.27
4276 5586 1.143481 TGGATGATCCATCAACGGCAT 59.857 47.619 10.75 0.00 42.67 4.40
4321 5631 1.661341 GTGTTTTGGTGGCAAATGCA 58.339 45.000 7.80 0.00 44.36 3.96
4341 5651 7.322664 TGAATAATGAGCCACCAAAAGAATTC 58.677 34.615 0.00 0.00 0.00 2.17
4372 5682 0.535335 TCTATCCGCGGTTCAAGCTT 59.465 50.000 27.15 0.00 0.00 3.74
4379 5689 2.404215 CGATGAAATCTATCCGCGGTT 58.596 47.619 27.15 20.39 42.58 4.44
4382 5692 1.350193 CCCGATGAAATCTATCCGCG 58.650 55.000 0.00 0.00 42.58 6.46
4385 5695 2.907042 ACCTCCCCGATGAAATCTATCC 59.093 50.000 0.00 0.00 42.58 2.59
4392 5702 0.326927 GTCCAACCTCCCCGATGAAA 59.673 55.000 0.00 0.00 0.00 2.69
4401 5711 1.618343 CCCACAATTTGTCCAACCTCC 59.382 52.381 0.00 0.00 0.00 4.30
4443 5753 5.067283 CCCAGCTAGCATTACCGTAATTTTT 59.933 40.000 18.83 0.00 0.00 1.94
4450 5760 0.464452 GTCCCAGCTAGCATTACCGT 59.536 55.000 18.83 0.00 0.00 4.83
4463 5773 4.903045 TGGGAACTACTAAAAGTCCCAG 57.097 45.455 5.62 0.00 39.68 4.45
4476 5786 2.233271 ACGTCTCTTCGTTGGGAACTA 58.767 47.619 0.00 0.00 41.37 2.24
4477 5787 1.038280 ACGTCTCTTCGTTGGGAACT 58.962 50.000 0.00 0.00 41.37 3.01
4478 5788 3.582743 ACGTCTCTTCGTTGGGAAC 57.417 52.632 0.00 0.00 41.37 3.62
4485 5795 4.238761 TCTTGATCAAACGTCTCTTCGT 57.761 40.909 9.88 0.00 46.19 3.85
4486 5796 4.859245 TGATCTTGATCAAACGTCTCTTCG 59.141 41.667 9.88 0.00 0.00 3.79
4487 5797 6.712241 TTGATCTTGATCAAACGTCTCTTC 57.288 37.500 19.85 0.00 37.59 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.