Multiple sequence alignment - TraesCS5A01G414900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G414900 chr5A 100.000 2381 0 0 1 2381 603051404 603053784 0.000000e+00 4397.0
1 TraesCS5A01G414900 chr5A 94.309 246 14 0 292 537 603012226 603012471 6.210000e-101 377.0
2 TraesCS5A01G414900 chr5A 92.453 53 3 1 256 308 603011219 603011270 9.130000e-10 75.0
3 TraesCS5A01G414900 chr1A 97.775 1708 14 2 687 2381 501994089 501995785 0.000000e+00 2922.0
4 TraesCS5A01G414900 chr1A 95.170 1263 40 7 1131 2381 365615349 365616602 0.000000e+00 1975.0
5 TraesCS5A01G414900 chr1A 95.618 251 10 1 692 941 365615074 365615324 3.690000e-108 401.0
6 TraesCS5A01G414900 chr1A 92.500 40 1 2 899 936 365615311 365615350 3.310000e-04 56.5
7 TraesCS5A01G414900 chr4A 95.332 1264 43 8 1131 2381 624742728 624741468 0.000000e+00 1993.0
8 TraesCS5A01G414900 chr4A 93.200 250 14 3 695 941 624743002 624742753 4.840000e-97 364.0
9 TraesCS5A01G414900 chr4A 80.769 260 29 14 2137 2381 624741832 624741579 1.450000e-42 183.0
10 TraesCS5A01G414900 chr4A 84.242 165 16 2 2120 2283 624741610 624741455 4.100000e-33 152.0
11 TraesCS5A01G414900 chr2B 91.648 886 52 10 686 1553 733826129 733827010 0.000000e+00 1206.0
12 TraesCS5A01G414900 chr2B 87.542 883 65 20 695 1558 84533022 84533878 0.000000e+00 979.0
13 TraesCS5A01G414900 chr2B 87.089 852 56 27 1576 2381 733837140 733837983 0.000000e+00 915.0
14 TraesCS5A01G414900 chr2B 86.352 784 65 22 1576 2329 637753980 637754751 0.000000e+00 817.0
15 TraesCS5A01G414900 chr2B 85.366 369 42 8 695 1058 637707742 637708103 2.890000e-99 372.0
16 TraesCS5A01G414900 chr2B 88.532 218 17 3 1323 1533 733826881 733827097 8.440000e-65 257.0
17 TraesCS5A01G414900 chr2B 80.781 333 34 16 1087 1396 637708102 637708427 1.420000e-57 233.0
18 TraesCS5A01G414900 chr2B 87.821 156 14 2 2125 2280 733837843 733837993 6.760000e-41 178.0
19 TraesCS5A01G414900 chr2B 76.547 307 47 17 2000 2292 733837664 733837959 6.860000e-31 145.0
20 TraesCS5A01G414900 chr2B 89.189 111 6 3 1323 1427 733826987 733827097 1.480000e-27 134.0
21 TraesCS5A01G414900 chr5D 91.830 869 58 12 695 1551 362066952 362067819 0.000000e+00 1199.0
22 TraesCS5A01G414900 chr7B 87.879 891 63 19 686 1558 328571102 328570239 0.000000e+00 1005.0
23 TraesCS5A01G414900 chr7B 85.401 137 20 0 341 477 703586398 703586534 2.470000e-30 143.0
24 TraesCS5A01G414900 chr6A 92.126 381 6 2 2014 2381 39135457 39135088 1.260000e-142 516.0
25 TraesCS5A01G414900 chr6A 86.946 406 32 11 1576 1961 573126600 573127004 1.010000e-118 436.0
26 TraesCS5A01G414900 chr6A 86.600 403 36 10 1576 1961 27202417 27202016 1.690000e-116 429.0
27 TraesCS5A01G414900 chr6A 80.597 268 26 14 2137 2381 39135452 39135188 1.450000e-42 183.0
28 TraesCS5A01G414900 chr3A 82.971 552 66 14 1 537 598892798 598893336 7.700000e-130 473.0
29 TraesCS5A01G414900 chr3A 84.527 433 47 12 111 537 598891656 598892074 6.130000e-111 411.0
30 TraesCS5A01G414900 chr3A 80.090 221 36 7 22 234 572479745 572479965 8.810000e-35 158.0
31 TraesCS5A01G414900 chr5B 86.946 406 32 11 1576 1961 551419004 551418600 1.010000e-118 436.0
32 TraesCS5A01G414900 chr5B 94.937 158 8 0 537 694 592831613 592831770 5.080000e-62 248.0
33 TraesCS5A01G414900 chr4B 86.946 406 32 11 1576 1961 347576751 347577155 1.010000e-118 436.0
34 TraesCS5A01G414900 chr1D 77.670 721 122 26 695 1398 431424203 431423505 1.020000e-108 403.0
35 TraesCS5A01G414900 chr7D 77.469 719 124 26 696 1398 587289197 587288501 1.720000e-106 396.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G414900 chr5A 603051404 603053784 2380 False 4397.000000 4397 100.000000 1 2381 1 chr5A.!!$F1 2380
1 TraesCS5A01G414900 chr5A 603011219 603012471 1252 False 226.000000 377 93.381000 256 537 2 chr5A.!!$F2 281
2 TraesCS5A01G414900 chr1A 501994089 501995785 1696 False 2922.000000 2922 97.775000 687 2381 1 chr1A.!!$F1 1694
3 TraesCS5A01G414900 chr1A 365615074 365616602 1528 False 810.833333 1975 94.429333 692 2381 3 chr1A.!!$F2 1689
4 TraesCS5A01G414900 chr4A 624741455 624743002 1547 True 673.000000 1993 88.385750 695 2381 4 chr4A.!!$R1 1686
5 TraesCS5A01G414900 chr2B 84533022 84533878 856 False 979.000000 979 87.542000 695 1558 1 chr2B.!!$F1 863
6 TraesCS5A01G414900 chr2B 637753980 637754751 771 False 817.000000 817 86.352000 1576 2329 1 chr2B.!!$F2 753
7 TraesCS5A01G414900 chr2B 733826129 733827097 968 False 532.333333 1206 89.789667 686 1553 3 chr2B.!!$F4 867
8 TraesCS5A01G414900 chr2B 733837140 733837993 853 False 412.666667 915 83.819000 1576 2381 3 chr2B.!!$F5 805
9 TraesCS5A01G414900 chr2B 637707742 637708427 685 False 302.500000 372 83.073500 695 1396 2 chr2B.!!$F3 701
10 TraesCS5A01G414900 chr5D 362066952 362067819 867 False 1199.000000 1199 91.830000 695 1551 1 chr5D.!!$F1 856
11 TraesCS5A01G414900 chr7B 328570239 328571102 863 True 1005.000000 1005 87.879000 686 1558 1 chr7B.!!$R1 872
12 TraesCS5A01G414900 chr3A 598891656 598893336 1680 False 442.000000 473 83.749000 1 537 2 chr3A.!!$F2 536
13 TraesCS5A01G414900 chr1D 431423505 431424203 698 True 403.000000 403 77.670000 695 1398 1 chr1D.!!$R1 703
14 TraesCS5A01G414900 chr7D 587288501 587289197 696 True 396.000000 396 77.469000 696 1398 1 chr7D.!!$R1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 1780 0.038166 TTTGAGACCTGGTCATGGGC 59.962 55.0 27.48 11.98 34.6 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 3820 6.430616 CCGTTTACAGGTTTAAAATGGGTAGA 59.569 38.462 6.62 0.0 36.19 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 1176 2.969827 TCGCCAGCGACTTCATCA 59.030 55.556 11.27 0.00 44.01 3.07
38 1179 1.078848 GCCAGCGACTTCATCACCT 60.079 57.895 0.00 0.00 0.00 4.00
57 1198 2.657237 CCCCGAGGCGCTAATAGG 59.343 66.667 7.64 3.60 0.00 2.57
58 1199 2.657237 CCCGAGGCGCTAATAGGG 59.343 66.667 7.64 9.45 0.00 3.53
66 1207 4.752514 GCTAATAGGGCGCGACTT 57.247 55.556 13.91 6.97 0.00 3.01
70 1211 1.102809 TAATAGGGCGCGACTTCGGA 61.103 55.000 13.91 0.00 40.23 4.55
76 1217 2.430921 CGCGACTTCGGAGCAAGT 60.431 61.111 0.00 0.00 39.43 3.16
79 1220 1.664649 CGACTTCGGAGCAAGTGCA 60.665 57.895 6.00 0.00 36.71 4.57
89 1230 2.593257 GAGCAAGTGCAGCTTCAAATC 58.407 47.619 6.00 0.00 43.58 2.17
97 1238 1.936547 GCAGCTTCAAATCGACCTAGG 59.063 52.381 7.41 7.41 0.00 3.02
125 1266 0.243636 CAATTGTTGGAACTCGGCCC 59.756 55.000 0.00 0.00 0.00 5.80
126 1267 0.112412 AATTGTTGGAACTCGGCCCT 59.888 50.000 0.00 0.00 0.00 5.19
127 1268 0.322546 ATTGTTGGAACTCGGCCCTC 60.323 55.000 0.00 0.00 0.00 4.30
128 1269 2.434359 GTTGGAACTCGGCCCTCG 60.434 66.667 0.00 0.00 40.90 4.63
139 1280 2.286523 GGCCCTCGGGATCGATCAT 61.287 63.158 25.93 0.00 45.04 2.45
144 1285 2.760650 CCCTCGGGATCGATCATATCAA 59.239 50.000 25.93 5.10 45.04 2.57
146 1287 4.141846 CCCTCGGGATCGATCATATCAAAT 60.142 45.833 25.93 0.00 45.04 2.32
147 1288 5.046529 CCTCGGGATCGATCATATCAAATC 58.953 45.833 25.93 5.91 45.04 2.17
152 1293 6.045318 GGGATCGATCATATCAAATCACGAT 58.955 40.000 25.93 0.00 40.87 3.73
156 1297 7.945033 TCGATCATATCAAATCACGATGAAA 57.055 32.000 0.00 0.00 30.75 2.69
159 1300 8.063630 CGATCATATCAAATCACGATGAAAACA 58.936 33.333 0.00 0.00 30.75 2.83
161 1302 8.038492 TCATATCAAATCACGATGAAAACACA 57.962 30.769 0.00 0.00 0.00 3.72
162 1303 8.676401 TCATATCAAATCACGATGAAAACACAT 58.324 29.630 0.00 0.00 0.00 3.21
163 1304 8.739461 CATATCAAATCACGATGAAAACACATG 58.261 33.333 0.00 0.00 0.00 3.21
165 1306 2.592796 TCACGATGAAAACACATGCG 57.407 45.000 0.00 0.00 0.00 4.73
166 1307 0.976963 CACGATGAAAACACATGCGC 59.023 50.000 0.00 0.00 0.00 6.09
169 1310 2.252747 CGATGAAAACACATGCGCAAT 58.747 42.857 17.11 1.94 0.00 3.56
170 1311 2.662637 CGATGAAAACACATGCGCAATT 59.337 40.909 17.11 0.00 0.00 2.32
190 1333 2.211353 TTTTTACCAAAGGCACGTGC 57.789 45.000 32.15 32.15 41.14 5.34
205 1348 0.660300 CGTGCCGTGCCTTTCTTTTC 60.660 55.000 0.00 0.00 0.00 2.29
206 1349 0.318699 GTGCCGTGCCTTTCTTTTCC 60.319 55.000 0.00 0.00 0.00 3.13
209 1352 0.598065 CCGTGCCTTTCTTTTCCCTG 59.402 55.000 0.00 0.00 0.00 4.45
211 1354 1.681264 CGTGCCTTTCTTTTCCCTGTT 59.319 47.619 0.00 0.00 0.00 3.16
215 1358 5.666462 GTGCCTTTCTTTTCCCTGTTTTTA 58.334 37.500 0.00 0.00 0.00 1.52
221 1364 9.613428 CCTTTCTTTTCCCTGTTTTTATTTTCT 57.387 29.630 0.00 0.00 0.00 2.52
223 1366 9.952030 TTTCTTTTCCCTGTTTTTATTTTCTGT 57.048 25.926 0.00 0.00 0.00 3.41
225 1368 9.952030 TCTTTTCCCTGTTTTTATTTTCTGTTT 57.048 25.926 0.00 0.00 0.00 2.83
228 1371 9.952030 TTTCCCTGTTTTTATTTTCTGTTTTCT 57.048 25.926 0.00 0.00 0.00 2.52
229 1372 9.952030 TTCCCTGTTTTTATTTTCTGTTTTCTT 57.048 25.926 0.00 0.00 0.00 2.52
231 1374 8.122330 CCCTGTTTTTATTTTCTGTTTTCTTGC 58.878 33.333 0.00 0.00 0.00 4.01
234 1377 8.447053 TGTTTTTATTTTCTGTTTTCTTGCACC 58.553 29.630 0.00 0.00 0.00 5.01
236 1379 7.769272 TTTATTTTCTGTTTTCTTGCACCAG 57.231 32.000 0.00 0.00 0.00 4.00
237 1380 3.799281 TTTCTGTTTTCTTGCACCAGG 57.201 42.857 0.00 0.00 0.00 4.45
238 1381 2.435372 TCTGTTTTCTTGCACCAGGT 57.565 45.000 0.00 0.00 0.00 4.00
239 1382 3.569194 TCTGTTTTCTTGCACCAGGTA 57.431 42.857 0.00 0.00 0.00 3.08
240 1383 3.476552 TCTGTTTTCTTGCACCAGGTAG 58.523 45.455 0.00 0.00 0.00 3.18
241 1384 3.135712 TCTGTTTTCTTGCACCAGGTAGA 59.864 43.478 0.00 0.00 0.00 2.59
242 1385 3.882888 CTGTTTTCTTGCACCAGGTAGAA 59.117 43.478 0.00 0.00 0.00 2.10
244 1387 4.892934 TGTTTTCTTGCACCAGGTAGAAAT 59.107 37.500 14.37 0.00 36.73 2.17
245 1388 5.009610 TGTTTTCTTGCACCAGGTAGAAATC 59.990 40.000 14.37 13.81 36.73 2.17
246 1389 4.640771 TTCTTGCACCAGGTAGAAATCT 57.359 40.909 1.26 0.00 0.00 2.40
247 1390 5.755409 TTCTTGCACCAGGTAGAAATCTA 57.245 39.130 1.26 0.00 0.00 1.98
248 1391 5.957771 TCTTGCACCAGGTAGAAATCTAT 57.042 39.130 0.00 0.00 0.00 1.98
249 1392 7.432148 TTCTTGCACCAGGTAGAAATCTATA 57.568 36.000 1.26 0.00 0.00 1.31
262 1405 6.365970 AGAAATCTATACCCTGGCTATGTG 57.634 41.667 0.00 0.00 0.00 3.21
330 1481 7.435488 CGACTAAGACACAATCCTAAACCTATG 59.565 40.741 0.00 0.00 0.00 2.23
335 1486 5.925509 ACACAATCCTAAACCTATGCGTAT 58.074 37.500 0.00 0.00 0.00 3.06
361 1512 0.606604 GCTAGAAACCTGACCGGACA 59.393 55.000 9.46 7.70 36.31 4.02
383 1534 4.693042 AGACCTATCTAGCTCTACACGT 57.307 45.455 0.00 0.00 31.46 4.49
389 1540 0.656785 CTAGCTCTACACGTCCGGAC 59.343 60.000 25.28 25.28 0.00 4.79
394 1545 0.311790 TCTACACGTCCGGACACAAC 59.688 55.000 32.80 7.84 0.00 3.32
402 1553 2.555782 CGGACACAACCATGCACG 59.444 61.111 0.00 0.00 0.00 5.34
412 1563 1.882912 ACCATGCACGTATATGCCTG 58.117 50.000 0.00 0.89 45.50 4.85
418 1569 2.102420 TGCACGTATATGCCTGCTACTT 59.898 45.455 13.91 0.00 45.50 2.24
447 1598 4.711846 TGGACTCTCCTACTAGTACACGTA 59.288 45.833 0.00 0.00 37.46 3.57
486 1637 2.489971 CCAAAGAACTAAGCCACGTGA 58.510 47.619 19.30 0.00 0.00 4.35
545 1696 9.613428 TCAAGATTACATCTAACATTTGTAGGG 57.387 33.333 0.00 0.00 39.08 3.53
546 1697 8.345565 CAAGATTACATCTAACATTTGTAGGGC 58.654 37.037 0.00 0.00 39.08 5.19
547 1698 6.998673 AGATTACATCTAACATTTGTAGGGCC 59.001 38.462 0.00 0.00 38.00 5.80
548 1699 4.584638 ACATCTAACATTTGTAGGGCCA 57.415 40.909 6.18 0.00 0.00 5.36
549 1700 5.129368 ACATCTAACATTTGTAGGGCCAT 57.871 39.130 6.18 0.00 0.00 4.40
550 1701 5.518865 ACATCTAACATTTGTAGGGCCATT 58.481 37.500 6.18 0.00 0.00 3.16
551 1702 5.957774 ACATCTAACATTTGTAGGGCCATTT 59.042 36.000 6.18 0.00 0.00 2.32
552 1703 5.913137 TCTAACATTTGTAGGGCCATTTG 57.087 39.130 6.18 0.00 0.00 2.32
553 1704 5.575157 TCTAACATTTGTAGGGCCATTTGA 58.425 37.500 6.18 0.00 0.00 2.69
554 1705 6.194235 TCTAACATTTGTAGGGCCATTTGAT 58.806 36.000 6.18 0.00 0.00 2.57
555 1706 4.741321 ACATTTGTAGGGCCATTTGATG 57.259 40.909 6.18 6.98 0.00 3.07
556 1707 4.352009 ACATTTGTAGGGCCATTTGATGA 58.648 39.130 6.18 0.00 0.00 2.92
557 1708 4.160252 ACATTTGTAGGGCCATTTGATGAC 59.840 41.667 6.18 0.00 0.00 3.06
558 1709 3.737559 TTGTAGGGCCATTTGATGACT 57.262 42.857 6.18 0.00 0.00 3.41
559 1710 3.003394 TGTAGGGCCATTTGATGACTG 57.997 47.619 6.18 0.00 0.00 3.51
560 1711 2.575735 TGTAGGGCCATTTGATGACTGA 59.424 45.455 6.18 0.00 0.00 3.41
561 1712 3.202818 TGTAGGGCCATTTGATGACTGAT 59.797 43.478 6.18 0.00 0.00 2.90
562 1713 2.662866 AGGGCCATTTGATGACTGATG 58.337 47.619 6.18 0.00 0.00 3.07
563 1714 1.068127 GGGCCATTTGATGACTGATGC 59.932 52.381 4.39 0.00 0.00 3.91
564 1715 1.268896 GGCCATTTGATGACTGATGCG 60.269 52.381 0.00 0.00 0.00 4.73
565 1716 1.672363 GCCATTTGATGACTGATGCGA 59.328 47.619 0.00 0.00 0.00 5.10
566 1717 2.097954 GCCATTTGATGACTGATGCGAA 59.902 45.455 0.00 0.00 0.00 4.70
567 1718 3.791122 GCCATTTGATGACTGATGCGAAG 60.791 47.826 0.00 0.00 0.00 3.79
581 1732 3.021451 CGAAGCACAAAGAACCCCT 57.979 52.632 0.00 0.00 0.00 4.79
582 1733 0.593128 CGAAGCACAAAGAACCCCTG 59.407 55.000 0.00 0.00 0.00 4.45
583 1734 1.692411 GAAGCACAAAGAACCCCTGT 58.308 50.000 0.00 0.00 0.00 4.00
584 1735 2.808933 CGAAGCACAAAGAACCCCTGTA 60.809 50.000 0.00 0.00 0.00 2.74
585 1736 2.568623 AGCACAAAGAACCCCTGTAG 57.431 50.000 0.00 0.00 0.00 2.74
586 1737 2.054799 AGCACAAAGAACCCCTGTAGA 58.945 47.619 0.00 0.00 0.00 2.59
587 1738 2.441750 AGCACAAAGAACCCCTGTAGAA 59.558 45.455 0.00 0.00 0.00 2.10
588 1739 2.552743 GCACAAAGAACCCCTGTAGAAC 59.447 50.000 0.00 0.00 0.00 3.01
589 1740 2.806244 CACAAAGAACCCCTGTAGAACG 59.194 50.000 0.00 0.00 0.00 3.95
590 1741 2.701951 ACAAAGAACCCCTGTAGAACGA 59.298 45.455 0.00 0.00 0.00 3.85
591 1742 3.064931 CAAAGAACCCCTGTAGAACGAC 58.935 50.000 0.00 0.00 0.00 4.34
592 1743 2.005370 AGAACCCCTGTAGAACGACA 57.995 50.000 0.00 0.00 0.00 4.35
593 1744 2.322658 AGAACCCCTGTAGAACGACAA 58.677 47.619 0.00 0.00 0.00 3.18
594 1745 2.036862 AGAACCCCTGTAGAACGACAAC 59.963 50.000 0.00 0.00 0.00 3.32
595 1746 0.316204 ACCCCTGTAGAACGACAACG 59.684 55.000 0.00 0.00 45.75 4.10
607 1758 2.577300 CGACAACGTCCAAATCTGTG 57.423 50.000 0.00 0.00 34.56 3.66
608 1759 2.131972 CGACAACGTCCAAATCTGTGA 58.868 47.619 0.00 0.00 34.56 3.58
609 1760 2.736721 CGACAACGTCCAAATCTGTGAT 59.263 45.455 0.00 0.00 34.56 3.06
610 1761 3.186409 CGACAACGTCCAAATCTGTGATT 59.814 43.478 0.00 0.00 34.56 2.57
611 1762 4.319477 CGACAACGTCCAAATCTGTGATTT 60.319 41.667 0.00 0.25 34.56 2.17
612 1763 5.514274 ACAACGTCCAAATCTGTGATTTT 57.486 34.783 3.13 0.00 0.00 1.82
613 1764 5.280945 ACAACGTCCAAATCTGTGATTTTG 58.719 37.500 3.13 1.27 33.58 2.44
614 1765 5.067153 ACAACGTCCAAATCTGTGATTTTGA 59.933 36.000 3.13 3.41 35.34 2.69
615 1766 5.362556 ACGTCCAAATCTGTGATTTTGAG 57.637 39.130 6.94 5.29 35.34 3.02
616 1767 5.063204 ACGTCCAAATCTGTGATTTTGAGA 58.937 37.500 6.94 1.92 35.34 3.27
617 1768 5.049405 ACGTCCAAATCTGTGATTTTGAGAC 60.049 40.000 6.94 10.22 35.34 3.36
618 1769 5.617751 CGTCCAAATCTGTGATTTTGAGACC 60.618 44.000 14.82 4.23 35.34 3.85
619 1770 5.474876 GTCCAAATCTGTGATTTTGAGACCT 59.525 40.000 6.94 0.00 35.34 3.85
620 1771 5.474532 TCCAAATCTGTGATTTTGAGACCTG 59.525 40.000 3.13 0.00 35.34 4.00
621 1772 5.336213 CCAAATCTGTGATTTTGAGACCTGG 60.336 44.000 3.13 0.00 35.34 4.45
622 1773 4.647564 ATCTGTGATTTTGAGACCTGGT 57.352 40.909 0.00 0.00 0.00 4.00
623 1774 4.008074 TCTGTGATTTTGAGACCTGGTC 57.992 45.455 19.20 19.20 0.00 4.02
624 1775 3.390967 TCTGTGATTTTGAGACCTGGTCA 59.609 43.478 27.48 6.87 34.60 4.02
625 1776 4.042062 TCTGTGATTTTGAGACCTGGTCAT 59.958 41.667 27.48 12.52 34.60 3.06
626 1777 4.074259 TGTGATTTTGAGACCTGGTCATG 58.926 43.478 27.48 0.00 34.60 3.07
627 1778 3.441572 GTGATTTTGAGACCTGGTCATGG 59.558 47.826 27.48 0.00 34.60 3.66
628 1779 2.584835 TTTTGAGACCTGGTCATGGG 57.415 50.000 27.48 0.00 34.60 4.00
629 1780 0.038166 TTTGAGACCTGGTCATGGGC 59.962 55.000 27.48 11.98 34.60 5.36
630 1781 1.852157 TTGAGACCTGGTCATGGGCC 61.852 60.000 27.48 0.00 34.60 5.80
631 1782 1.997874 GAGACCTGGTCATGGGCCT 60.998 63.158 27.48 5.90 34.60 5.19
632 1783 2.262774 GAGACCTGGTCATGGGCCTG 62.263 65.000 27.48 0.24 34.60 4.85
633 1784 3.341629 ACCTGGTCATGGGCCTGG 61.342 66.667 22.20 22.20 46.59 4.45
634 1785 4.133373 CCTGGTCATGGGCCTGGG 62.133 72.222 18.61 12.17 40.23 4.45
635 1786 4.828296 CTGGTCATGGGCCTGGGC 62.828 72.222 12.58 12.58 41.06 5.36
645 1796 3.686760 GCCTGGGCCTCACTTTTC 58.313 61.111 4.53 0.00 34.56 2.29
646 1797 1.075659 GCCTGGGCCTCACTTTTCT 59.924 57.895 4.53 0.00 34.56 2.52
647 1798 0.540597 GCCTGGGCCTCACTTTTCTT 60.541 55.000 4.53 0.00 34.56 2.52
648 1799 1.539157 CCTGGGCCTCACTTTTCTTC 58.461 55.000 4.53 0.00 0.00 2.87
649 1800 1.539157 CTGGGCCTCACTTTTCTTCC 58.461 55.000 4.53 0.00 0.00 3.46
650 1801 0.850100 TGGGCCTCACTTTTCTTCCA 59.150 50.000 4.53 0.00 0.00 3.53
651 1802 1.202927 TGGGCCTCACTTTTCTTCCAG 60.203 52.381 4.53 0.00 0.00 3.86
652 1803 1.073923 GGGCCTCACTTTTCTTCCAGA 59.926 52.381 0.84 0.00 0.00 3.86
653 1804 2.489073 GGGCCTCACTTTTCTTCCAGAA 60.489 50.000 0.84 0.00 31.28 3.02
654 1805 3.222603 GGCCTCACTTTTCTTCCAGAAA 58.777 45.455 0.00 0.00 42.00 2.52
655 1806 3.004839 GGCCTCACTTTTCTTCCAGAAAC 59.995 47.826 0.00 0.00 43.25 2.78
656 1807 3.004839 GCCTCACTTTTCTTCCAGAAACC 59.995 47.826 0.00 0.00 43.25 3.27
657 1808 3.570125 CCTCACTTTTCTTCCAGAAACCC 59.430 47.826 0.00 0.00 43.25 4.11
658 1809 4.207165 CTCACTTTTCTTCCAGAAACCCA 58.793 43.478 0.00 0.00 43.25 4.51
659 1810 4.207165 TCACTTTTCTTCCAGAAACCCAG 58.793 43.478 0.00 0.00 43.25 4.45
660 1811 2.959030 ACTTTTCTTCCAGAAACCCAGC 59.041 45.455 0.00 0.00 43.25 4.85
661 1812 3.225940 CTTTTCTTCCAGAAACCCAGCT 58.774 45.455 0.00 0.00 43.25 4.24
667 1818 1.349026 TCCAGAAACCCAGCTCAGAAG 59.651 52.381 0.00 0.00 0.00 2.85
673 1824 3.297134 AACCCAGCTCAGAAGTCAAAA 57.703 42.857 0.00 0.00 0.00 2.44
674 1825 3.297134 ACCCAGCTCAGAAGTCAAAAA 57.703 42.857 0.00 0.00 0.00 1.94
1933 3820 6.114187 TCCTGATGACACACTTTTCATAGT 57.886 37.500 0.00 0.00 32.43 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.472276 GGCGATGTTGTAGCGACGAG 61.472 60.000 0.00 0.00 41.60 4.18
4 5 1.515519 GGCGATGTTGTAGCGACGA 60.516 57.895 0.00 0.00 41.60 4.20
5 6 2.995482 GGCGATGTTGTAGCGACG 59.005 61.111 0.00 0.00 41.60 5.12
7 8 1.809619 GCTGGCGATGTTGTAGCGA 60.810 57.895 0.00 0.00 41.60 4.93
8 9 2.703409 GCTGGCGATGTTGTAGCG 59.297 61.111 0.00 0.00 42.06 4.26
29 1170 2.669133 CCTCGGGGCAGGTGATGAA 61.669 63.158 0.00 0.00 0.00 2.57
30 1171 3.083349 CCTCGGGGCAGGTGATGA 61.083 66.667 0.00 0.00 0.00 2.92
53 1194 2.831742 TCCGAAGTCGCGCCCTAT 60.832 61.111 0.00 0.00 38.18 2.57
54 1195 3.515286 CTCCGAAGTCGCGCCCTA 61.515 66.667 0.00 0.00 38.18 3.53
58 1199 3.843240 CTTGCTCCGAAGTCGCGC 61.843 66.667 0.00 0.00 38.18 6.86
62 1203 1.905922 GCTGCACTTGCTCCGAAGTC 61.906 60.000 2.33 0.00 42.66 3.01
64 1205 1.233285 AAGCTGCACTTGCTCCGAAG 61.233 55.000 1.02 0.00 40.22 3.79
65 1206 1.227943 AAGCTGCACTTGCTCCGAA 60.228 52.632 1.02 0.00 40.22 4.30
66 1207 1.669115 GAAGCTGCACTTGCTCCGA 60.669 57.895 1.02 0.00 39.29 4.55
70 1211 1.068748 CGATTTGAAGCTGCACTTGCT 60.069 47.619 0.00 0.00 39.29 3.91
76 1217 2.621338 CTAGGTCGATTTGAAGCTGCA 58.379 47.619 1.02 0.00 0.00 4.41
79 1220 3.528597 GACCTAGGTCGATTTGAAGCT 57.471 47.619 25.83 0.00 35.30 3.74
109 1250 1.072505 GAGGGCCGAGTTCCAACAA 59.927 57.895 0.00 0.00 0.00 2.83
127 1268 4.266265 CGTGATTTGATATGATCGATCCCG 59.734 45.833 22.31 6.11 37.07 5.14
128 1269 5.410924 TCGTGATTTGATATGATCGATCCC 58.589 41.667 22.31 9.59 0.00 3.85
139 1280 6.746822 GCATGTGTTTTCATCGTGATTTGATA 59.253 34.615 0.00 0.00 0.00 2.15
144 1285 3.491356 CGCATGTGTTTTCATCGTGATT 58.509 40.909 0.00 0.00 0.00 2.57
146 1287 1.399599 GCGCATGTGTTTTCATCGTGA 60.400 47.619 0.30 0.00 0.00 4.35
147 1288 0.976963 GCGCATGTGTTTTCATCGTG 59.023 50.000 0.30 0.00 0.00 4.35
152 1293 4.871993 AAAAATTGCGCATGTGTTTTCA 57.128 31.818 12.75 0.00 0.00 2.69
187 1330 0.318699 GGAAAAGAAAGGCACGGCAC 60.319 55.000 0.00 0.00 0.00 5.01
190 1333 0.598065 CAGGGAAAAGAAAGGCACGG 59.402 55.000 0.00 0.00 0.00 4.94
197 1340 9.952030 ACAGAAAATAAAAACAGGGAAAAGAAA 57.048 25.926 0.00 0.00 0.00 2.52
205 1348 8.122330 GCAAGAAAACAGAAAATAAAAACAGGG 58.878 33.333 0.00 0.00 0.00 4.45
206 1349 8.663911 TGCAAGAAAACAGAAAATAAAAACAGG 58.336 29.630 0.00 0.00 0.00 4.00
209 1352 8.447053 TGGTGCAAGAAAACAGAAAATAAAAAC 58.553 29.630 0.00 0.00 0.00 2.43
211 1354 7.279758 CCTGGTGCAAGAAAACAGAAAATAAAA 59.720 33.333 0.00 0.00 0.00 1.52
215 1358 4.162131 ACCTGGTGCAAGAAAACAGAAAAT 59.838 37.500 0.00 0.00 0.00 1.82
221 1364 3.569194 TCTACCTGGTGCAAGAAAACA 57.431 42.857 10.23 0.00 0.00 2.83
222 1365 4.911514 TTTCTACCTGGTGCAAGAAAAC 57.088 40.909 16.95 0.00 35.58 2.43
223 1366 5.385198 AGATTTCTACCTGGTGCAAGAAAA 58.615 37.500 21.05 9.74 40.32 2.29
225 1368 4.640771 AGATTTCTACCTGGTGCAAGAA 57.359 40.909 10.23 8.02 0.00 2.52
226 1369 5.957771 ATAGATTTCTACCTGGTGCAAGA 57.042 39.130 10.23 1.10 0.00 3.02
227 1370 5.992217 GGTATAGATTTCTACCTGGTGCAAG 59.008 44.000 10.23 0.00 35.51 4.01
228 1371 5.163237 GGGTATAGATTTCTACCTGGTGCAA 60.163 44.000 10.23 0.00 37.98 4.08
229 1372 4.347000 GGGTATAGATTTCTACCTGGTGCA 59.653 45.833 10.23 0.00 37.98 4.57
231 1374 5.012148 CCAGGGTATAGATTTCTACCTGGTG 59.988 48.000 22.30 0.00 45.76 4.17
234 1377 4.841246 AGCCAGGGTATAGATTTCTACCTG 59.159 45.833 12.54 12.54 38.74 4.00
236 1379 6.440965 ACATAGCCAGGGTATAGATTTCTACC 59.559 42.308 10.99 0.00 37.29 3.18
237 1380 7.038941 ACACATAGCCAGGGTATAGATTTCTAC 60.039 40.741 10.99 0.00 0.00 2.59
238 1381 7.016914 ACACATAGCCAGGGTATAGATTTCTA 58.983 38.462 10.99 0.00 0.00 2.10
239 1382 5.846714 ACACATAGCCAGGGTATAGATTTCT 59.153 40.000 10.99 0.00 0.00 2.52
240 1383 6.115448 ACACATAGCCAGGGTATAGATTTC 57.885 41.667 10.99 0.00 0.00 2.17
241 1384 7.814693 ATACACATAGCCAGGGTATAGATTT 57.185 36.000 10.99 0.00 0.00 2.17
330 1481 4.025647 CAGGTTTCTAGCAAGCTTATACGC 60.026 45.833 3.98 0.00 32.01 4.42
335 1486 3.616560 CGGTCAGGTTTCTAGCAAGCTTA 60.617 47.826 3.98 0.00 32.01 3.09
383 1534 1.599518 GTGCATGGTTGTGTCCGGA 60.600 57.895 0.00 0.00 0.00 5.14
389 1540 2.286950 GGCATATACGTGCATGGTTGTG 60.287 50.000 11.36 6.79 46.81 3.33
402 1553 4.264460 AGCAGAAGTAGCAGGCATATAC 57.736 45.455 0.00 0.00 0.00 1.47
412 1563 2.418060 GGAGAGTCCAAGCAGAAGTAGC 60.418 54.545 0.00 0.00 36.28 3.58
418 1569 2.909504 AGTAGGAGAGTCCAAGCAGA 57.090 50.000 0.00 0.00 39.61 4.26
447 1598 3.561143 TGGCAACTAACCAAAGTCATGT 58.439 40.909 0.00 0.00 33.12 3.21
474 1625 1.129251 CTTGCATGTCACGTGGCTTAG 59.871 52.381 22.43 11.84 0.00 2.18
486 1637 7.309194 GGTTTGAAAAGTAGTATCCTTGCATGT 60.309 37.037 0.00 0.00 0.00 3.21
528 1679 6.096705 TCAAATGGCCCTACAAATGTTAGATG 59.903 38.462 0.00 0.00 0.00 2.90
537 1688 3.763360 CAGTCATCAAATGGCCCTACAAA 59.237 43.478 0.00 0.00 34.84 2.83
538 1689 3.010027 TCAGTCATCAAATGGCCCTACAA 59.990 43.478 0.00 0.00 34.84 2.41
539 1690 2.575735 TCAGTCATCAAATGGCCCTACA 59.424 45.455 0.00 0.00 34.84 2.74
540 1691 3.281727 TCAGTCATCAAATGGCCCTAC 57.718 47.619 0.00 0.00 34.84 3.18
541 1692 3.824133 CATCAGTCATCAAATGGCCCTA 58.176 45.455 0.00 0.00 34.84 3.53
542 1693 2.662866 CATCAGTCATCAAATGGCCCT 58.337 47.619 0.00 0.00 34.84 5.19
543 1694 1.068127 GCATCAGTCATCAAATGGCCC 59.932 52.381 0.00 0.00 34.84 5.80
544 1695 1.268896 CGCATCAGTCATCAAATGGCC 60.269 52.381 0.00 0.00 34.84 5.36
545 1696 1.672363 TCGCATCAGTCATCAAATGGC 59.328 47.619 0.00 0.00 34.38 4.40
546 1697 3.791122 GCTTCGCATCAGTCATCAAATGG 60.791 47.826 0.00 0.00 0.00 3.16
547 1698 3.181504 TGCTTCGCATCAGTCATCAAATG 60.182 43.478 0.00 0.00 31.71 2.32
548 1699 3.011818 TGCTTCGCATCAGTCATCAAAT 58.988 40.909 0.00 0.00 31.71 2.32
549 1700 2.160219 GTGCTTCGCATCAGTCATCAAA 59.840 45.455 0.00 0.00 41.91 2.69
550 1701 1.733912 GTGCTTCGCATCAGTCATCAA 59.266 47.619 0.00 0.00 41.91 2.57
551 1702 1.338011 TGTGCTTCGCATCAGTCATCA 60.338 47.619 0.00 0.00 41.91 3.07
552 1703 1.362768 TGTGCTTCGCATCAGTCATC 58.637 50.000 0.00 0.00 41.91 2.92
553 1704 1.812235 TTGTGCTTCGCATCAGTCAT 58.188 45.000 0.00 0.00 41.91 3.06
554 1705 1.532437 CTTTGTGCTTCGCATCAGTCA 59.468 47.619 0.00 0.00 41.91 3.41
555 1706 1.800586 TCTTTGTGCTTCGCATCAGTC 59.199 47.619 0.00 0.00 41.91 3.51
556 1707 1.882912 TCTTTGTGCTTCGCATCAGT 58.117 45.000 0.00 0.00 41.91 3.41
557 1708 2.578495 GTTCTTTGTGCTTCGCATCAG 58.422 47.619 0.00 0.00 41.91 2.90
558 1709 1.266718 GGTTCTTTGTGCTTCGCATCA 59.733 47.619 0.00 0.00 41.91 3.07
559 1710 1.401539 GGGTTCTTTGTGCTTCGCATC 60.402 52.381 0.00 0.00 41.91 3.91
560 1711 0.598065 GGGTTCTTTGTGCTTCGCAT 59.402 50.000 0.00 0.00 41.91 4.73
561 1712 1.452145 GGGGTTCTTTGTGCTTCGCA 61.452 55.000 0.00 0.00 35.60 5.10
562 1713 1.172812 AGGGGTTCTTTGTGCTTCGC 61.173 55.000 0.00 0.00 0.00 4.70
563 1714 0.593128 CAGGGGTTCTTTGTGCTTCG 59.407 55.000 0.00 0.00 0.00 3.79
564 1715 1.692411 ACAGGGGTTCTTTGTGCTTC 58.308 50.000 0.00 0.00 0.00 3.86
565 1716 2.441750 TCTACAGGGGTTCTTTGTGCTT 59.558 45.455 0.00 0.00 0.00 3.91
566 1717 2.054799 TCTACAGGGGTTCTTTGTGCT 58.945 47.619 0.00 0.00 0.00 4.40
567 1718 2.552743 GTTCTACAGGGGTTCTTTGTGC 59.447 50.000 0.00 0.00 0.00 4.57
568 1719 2.806244 CGTTCTACAGGGGTTCTTTGTG 59.194 50.000 0.00 0.00 0.00 3.33
569 1720 2.701951 TCGTTCTACAGGGGTTCTTTGT 59.298 45.455 0.00 0.00 0.00 2.83
570 1721 3.064931 GTCGTTCTACAGGGGTTCTTTG 58.935 50.000 0.00 0.00 0.00 2.77
571 1722 2.701951 TGTCGTTCTACAGGGGTTCTTT 59.298 45.455 0.00 0.00 0.00 2.52
572 1723 2.322658 TGTCGTTCTACAGGGGTTCTT 58.677 47.619 0.00 0.00 0.00 2.52
573 1724 2.005370 TGTCGTTCTACAGGGGTTCT 57.995 50.000 0.00 0.00 0.00 3.01
574 1725 2.410939 GTTGTCGTTCTACAGGGGTTC 58.589 52.381 0.00 0.00 0.00 3.62
575 1726 1.269936 CGTTGTCGTTCTACAGGGGTT 60.270 52.381 0.00 0.00 0.00 4.11
576 1727 0.316204 CGTTGTCGTTCTACAGGGGT 59.684 55.000 0.00 0.00 0.00 4.95
577 1728 3.117589 CGTTGTCGTTCTACAGGGG 57.882 57.895 0.00 0.00 0.00 4.79
588 1739 2.131972 TCACAGATTTGGACGTTGTCG 58.868 47.619 0.00 0.00 43.34 4.35
589 1740 4.749245 AATCACAGATTTGGACGTTGTC 57.251 40.909 0.00 0.00 0.00 3.18
590 1741 5.067153 TCAAAATCACAGATTTGGACGTTGT 59.933 36.000 5.81 0.00 37.19 3.32
591 1742 5.518812 TCAAAATCACAGATTTGGACGTTG 58.481 37.500 5.81 0.79 37.19 4.10
592 1743 5.530915 TCTCAAAATCACAGATTTGGACGTT 59.469 36.000 5.81 0.00 37.19 3.99
593 1744 5.049405 GTCTCAAAATCACAGATTTGGACGT 60.049 40.000 5.81 0.00 37.19 4.34
594 1745 5.385617 GTCTCAAAATCACAGATTTGGACG 58.614 41.667 5.81 3.85 37.19 4.79
595 1746 5.474876 AGGTCTCAAAATCACAGATTTGGAC 59.525 40.000 5.81 12.47 37.19 4.02
596 1747 5.474532 CAGGTCTCAAAATCACAGATTTGGA 59.525 40.000 8.75 8.75 37.19 3.53
597 1748 5.336213 CCAGGTCTCAAAATCACAGATTTGG 60.336 44.000 5.81 3.49 37.19 3.28
598 1749 5.242393 ACCAGGTCTCAAAATCACAGATTTG 59.758 40.000 5.81 0.00 37.77 2.32
599 1750 5.388654 ACCAGGTCTCAAAATCACAGATTT 58.611 37.500 0.00 0.00 0.00 2.17
600 1751 4.990526 ACCAGGTCTCAAAATCACAGATT 58.009 39.130 0.00 0.00 0.00 2.40
601 1752 4.042062 TGACCAGGTCTCAAAATCACAGAT 59.958 41.667 20.82 0.00 33.15 2.90
602 1753 3.390967 TGACCAGGTCTCAAAATCACAGA 59.609 43.478 20.82 0.00 33.15 3.41
603 1754 3.743521 TGACCAGGTCTCAAAATCACAG 58.256 45.455 20.82 0.00 33.15 3.66
604 1755 3.855255 TGACCAGGTCTCAAAATCACA 57.145 42.857 20.82 0.00 33.15 3.58
605 1756 3.441572 CCATGACCAGGTCTCAAAATCAC 59.558 47.826 20.82 0.00 33.15 3.06
606 1757 3.561960 CCCATGACCAGGTCTCAAAATCA 60.562 47.826 20.82 0.00 33.15 2.57
607 1758 3.019564 CCCATGACCAGGTCTCAAAATC 58.980 50.000 20.82 0.00 33.15 2.17
608 1759 2.885554 GCCCATGACCAGGTCTCAAAAT 60.886 50.000 20.82 2.26 33.15 1.82
609 1760 1.547675 GCCCATGACCAGGTCTCAAAA 60.548 52.381 20.82 0.00 33.15 2.44
610 1761 0.038166 GCCCATGACCAGGTCTCAAA 59.962 55.000 20.82 0.00 33.15 2.69
611 1762 1.685224 GCCCATGACCAGGTCTCAA 59.315 57.895 20.82 0.36 33.15 3.02
612 1763 2.300967 GGCCCATGACCAGGTCTCA 61.301 63.158 20.82 1.92 33.15 3.27
613 1764 1.997874 AGGCCCATGACCAGGTCTC 60.998 63.158 20.82 4.77 30.18 3.36
614 1765 2.125912 AGGCCCATGACCAGGTCT 59.874 61.111 20.82 3.50 31.62 3.85
615 1766 2.273449 CAGGCCCATGACCAGGTC 59.727 66.667 13.35 13.35 0.00 3.85
616 1767 3.341629 CCAGGCCCATGACCAGGT 61.342 66.667 0.00 0.00 0.00 4.00
617 1768 4.133373 CCCAGGCCCATGACCAGG 62.133 72.222 0.00 8.63 33.72 4.45
618 1769 4.828296 GCCCAGGCCCATGACCAG 62.828 72.222 0.00 0.00 34.56 4.00
628 1779 0.540597 AAGAAAAGTGAGGCCCAGGC 60.541 55.000 0.00 0.00 41.06 4.85
629 1780 1.539157 GAAGAAAAGTGAGGCCCAGG 58.461 55.000 0.00 0.00 0.00 4.45
630 1781 1.202927 TGGAAGAAAAGTGAGGCCCAG 60.203 52.381 0.00 0.00 0.00 4.45
631 1782 0.850100 TGGAAGAAAAGTGAGGCCCA 59.150 50.000 0.00 0.00 0.00 5.36
632 1783 1.073923 TCTGGAAGAAAAGTGAGGCCC 59.926 52.381 0.00 0.00 42.31 5.80
633 1784 2.568623 TCTGGAAGAAAAGTGAGGCC 57.431 50.000 0.00 0.00 42.31 5.19
644 1795 1.349026 CTGAGCTGGGTTTCTGGAAGA 59.651 52.381 0.00 0.00 44.68 2.87
645 1796 1.349026 TCTGAGCTGGGTTTCTGGAAG 59.651 52.381 0.00 0.00 0.00 3.46
646 1797 1.434188 TCTGAGCTGGGTTTCTGGAA 58.566 50.000 0.00 0.00 0.00 3.53
647 1798 1.349026 CTTCTGAGCTGGGTTTCTGGA 59.651 52.381 0.00 0.00 0.00 3.86
648 1799 1.072965 ACTTCTGAGCTGGGTTTCTGG 59.927 52.381 0.00 0.00 0.00 3.86
649 1800 2.224378 TGACTTCTGAGCTGGGTTTCTG 60.224 50.000 0.00 0.00 0.00 3.02
650 1801 2.050144 TGACTTCTGAGCTGGGTTTCT 58.950 47.619 0.00 0.00 0.00 2.52
651 1802 2.550830 TGACTTCTGAGCTGGGTTTC 57.449 50.000 0.00 0.00 0.00 2.78
652 1803 3.297134 TTTGACTTCTGAGCTGGGTTT 57.703 42.857 0.00 0.00 0.00 3.27
653 1804 3.297134 TTTTGACTTCTGAGCTGGGTT 57.703 42.857 0.00 0.00 0.00 4.11
654 1805 3.297134 TTTTTGACTTCTGAGCTGGGT 57.703 42.857 0.00 0.00 0.00 4.51
673 1824 6.592870 TCCCAAAAACAATTTTACGGGATTT 58.407 32.000 15.33 0.00 43.84 2.17
674 1825 6.176014 TCCCAAAAACAATTTTACGGGATT 57.824 33.333 15.33 0.00 43.84 3.01
677 1828 5.760743 ACATTCCCAAAAACAATTTTACGGG 59.239 36.000 12.28 12.28 42.57 5.28
678 1829 6.704050 AGACATTCCCAAAAACAATTTTACGG 59.296 34.615 0.00 0.00 36.62 4.02
679 1830 7.707774 AGACATTCCCAAAAACAATTTTACG 57.292 32.000 0.00 0.00 36.62 3.18
683 1834 9.844257 TCAATTAGACATTCCCAAAAACAATTT 57.156 25.926 0.00 0.00 0.00 1.82
684 1835 9.271828 GTCAATTAGACATTCCCAAAAACAATT 57.728 29.630 0.00 0.00 46.77 2.32
767 1945 3.223435 GACTGCCCTGATAGTACAGCTA 58.777 50.000 0.00 0.00 36.67 3.32
1052 2372 5.402867 GTGTTTCCTCTTCGTTCTACTCTTG 59.597 44.000 0.00 0.00 0.00 3.02
1933 3820 6.430616 CCGTTTACAGGTTTAAAATGGGTAGA 59.569 38.462 6.62 0.00 36.19 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.