Multiple sequence alignment - TraesCS5A01G414400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G414400 chr5A 100.000 1762 0 0 935 2696 602357150 602355389 0.000000e+00 3254
1 TraesCS5A01G414400 chr5A 100.000 715 0 0 1 715 602358084 602357370 0.000000e+00 1321
2 TraesCS5A01G414400 chr5A 97.984 248 4 1 99 346 463798549 463798303 1.920000e-116 429
3 TraesCS5A01G414400 chr5D 95.940 1133 39 2 995 2123 482598351 482597222 0.000000e+00 1831
4 TraesCS5A01G414400 chr5D 85.714 595 45 20 2120 2696 482597065 482596493 2.310000e-165 592
5 TraesCS5A01G414400 chr5D 88.148 135 10 6 354 487 482602347 482602218 3.590000e-34 156
6 TraesCS5A01G414400 chr5D 86.567 134 12 6 354 487 482607345 482607218 2.800000e-30 143
7 TraesCS5A01G414400 chr5B 93.934 1154 60 8 995 2140 591836760 591835609 0.000000e+00 1735
8 TraesCS5A01G414400 chr5B 99.592 245 1 0 100 344 298703311 298703555 5.290000e-122 448
9 TraesCS5A01G414400 chr5B 98.381 247 4 0 99 345 462292097 462291851 4.120000e-118 435
10 TraesCS5A01G414400 chr5B 87.338 308 20 9 2155 2454 591835374 591835078 4.300000e-88 335
11 TraesCS5A01G414400 chr5B 87.407 135 11 6 354 487 592206388 592206259 1.670000e-32 150
12 TraesCS5A01G414400 chr2A 99.588 243 1 0 98 340 694155189 694155431 6.850000e-121 444
13 TraesCS5A01G414400 chr7A 99.177 243 2 0 100 342 23347023 23346781 3.190000e-119 438
14 TraesCS5A01G414400 chr6D 98.780 246 2 1 96 340 149882403 149882158 1.150000e-118 436
15 TraesCS5A01G414400 chr6A 99.174 242 2 0 100 341 608342001 608341760 1.150000e-118 436
16 TraesCS5A01G414400 chr4A 99.170 241 2 0 100 340 37605315 37605555 4.120000e-118 435
17 TraesCS5A01G414400 chr4A 98.755 241 3 0 100 340 61317955 61318195 1.920000e-116 429


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G414400 chr5A 602355389 602358084 2695 True 2287.500000 3254 100.000 1 2696 2 chr5A.!!$R2 2695
1 TraesCS5A01G414400 chr5D 482596493 482602347 5854 True 859.666667 1831 89.934 354 2696 3 chr5D.!!$R2 2342
2 TraesCS5A01G414400 chr5B 591835078 591836760 1682 True 1035.000000 1735 90.636 995 2454 2 chr5B.!!$R3 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.034337 TGCGGTTTTCGAGGCTAACT 59.966 50.0 0.0 0.0 42.43 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 5478 0.678048 GACACCACAAGCCCTCATCC 60.678 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.323729 CCATTGACACGATGTATGTGC 57.676 47.619 0.00 0.00 41.03 4.57
21 22 2.032054 CCATTGACACGATGTATGTGCC 59.968 50.000 0.00 0.00 41.03 5.01
22 23 2.464157 TTGACACGATGTATGTGCCA 57.536 45.000 0.00 0.00 41.03 4.92
23 24 2.689553 TGACACGATGTATGTGCCAT 57.310 45.000 0.00 0.00 41.03 4.40
24 25 2.549926 TGACACGATGTATGTGCCATC 58.450 47.619 0.00 0.00 41.03 3.51
25 26 1.867233 GACACGATGTATGTGCCATCC 59.133 52.381 0.00 0.00 41.03 3.51
26 27 1.229428 CACGATGTATGTGCCATCCC 58.771 55.000 0.00 0.00 36.23 3.85
27 28 0.836606 ACGATGTATGTGCCATCCCA 59.163 50.000 0.00 0.00 36.23 4.37
28 29 1.229428 CGATGTATGTGCCATCCCAC 58.771 55.000 0.00 0.00 36.23 4.61
36 37 3.399440 TGTGCCATCCCACAAAAATTC 57.601 42.857 0.00 0.00 42.33 2.17
37 38 2.702478 TGTGCCATCCCACAAAAATTCA 59.298 40.909 0.00 0.00 42.33 2.57
38 39 3.135348 TGTGCCATCCCACAAAAATTCAA 59.865 39.130 0.00 0.00 42.33 2.69
39 40 4.133078 GTGCCATCCCACAAAAATTCAAA 58.867 39.130 0.00 0.00 35.80 2.69
40 41 4.024133 GTGCCATCCCACAAAAATTCAAAC 60.024 41.667 0.00 0.00 35.80 2.93
41 42 3.501828 GCCATCCCACAAAAATTCAAACC 59.498 43.478 0.00 0.00 0.00 3.27
42 43 4.071423 CCATCCCACAAAAATTCAAACCC 58.929 43.478 0.00 0.00 0.00 4.11
43 44 4.445448 CCATCCCACAAAAATTCAAACCCA 60.445 41.667 0.00 0.00 0.00 4.51
44 45 5.315348 CATCCCACAAAAATTCAAACCCAT 58.685 37.500 0.00 0.00 0.00 4.00
45 46 6.471146 CATCCCACAAAAATTCAAACCCATA 58.529 36.000 0.00 0.00 0.00 2.74
46 47 6.694445 TCCCACAAAAATTCAAACCCATAT 57.306 33.333 0.00 0.00 0.00 1.78
47 48 6.706295 TCCCACAAAAATTCAAACCCATATC 58.294 36.000 0.00 0.00 0.00 1.63
48 49 5.879777 CCCACAAAAATTCAAACCCATATCC 59.120 40.000 0.00 0.00 0.00 2.59
49 50 6.471146 CCACAAAAATTCAAACCCATATCCA 58.529 36.000 0.00 0.00 0.00 3.41
50 51 7.111466 CCACAAAAATTCAAACCCATATCCAT 58.889 34.615 0.00 0.00 0.00 3.41
51 52 7.280652 CCACAAAAATTCAAACCCATATCCATC 59.719 37.037 0.00 0.00 0.00 3.51
52 53 7.280652 CACAAAAATTCAAACCCATATCCATCC 59.719 37.037 0.00 0.00 0.00 3.51
53 54 6.499106 AAAATTCAAACCCATATCCATCCC 57.501 37.500 0.00 0.00 0.00 3.85
54 55 2.949177 TCAAACCCATATCCATCCCG 57.051 50.000 0.00 0.00 0.00 5.14
55 56 2.131854 TCAAACCCATATCCATCCCGT 58.868 47.619 0.00 0.00 0.00 5.28
56 57 3.319220 TCAAACCCATATCCATCCCGTA 58.681 45.455 0.00 0.00 0.00 4.02
57 58 3.326588 TCAAACCCATATCCATCCCGTAG 59.673 47.826 0.00 0.00 0.00 3.51
58 59 1.276622 ACCCATATCCATCCCGTAGC 58.723 55.000 0.00 0.00 0.00 3.58
59 60 1.203313 ACCCATATCCATCCCGTAGCT 60.203 52.381 0.00 0.00 0.00 3.32
60 61 1.482593 CCCATATCCATCCCGTAGCTC 59.517 57.143 0.00 0.00 0.00 4.09
61 62 2.179427 CCATATCCATCCCGTAGCTCA 58.821 52.381 0.00 0.00 0.00 4.26
62 63 2.567169 CCATATCCATCCCGTAGCTCAA 59.433 50.000 0.00 0.00 0.00 3.02
63 64 3.368843 CCATATCCATCCCGTAGCTCAAG 60.369 52.174 0.00 0.00 0.00 3.02
64 65 2.088104 ATCCATCCCGTAGCTCAAGA 57.912 50.000 0.00 0.00 0.00 3.02
65 66 1.860641 TCCATCCCGTAGCTCAAGAA 58.139 50.000 0.00 0.00 0.00 2.52
66 67 2.184533 TCCATCCCGTAGCTCAAGAAA 58.815 47.619 0.00 0.00 0.00 2.52
67 68 2.093658 TCCATCCCGTAGCTCAAGAAAC 60.094 50.000 0.00 0.00 0.00 2.78
68 69 2.354704 CCATCCCGTAGCTCAAGAAACA 60.355 50.000 0.00 0.00 0.00 2.83
69 70 3.334691 CATCCCGTAGCTCAAGAAACAA 58.665 45.455 0.00 0.00 0.00 2.83
70 71 3.040147 TCCCGTAGCTCAAGAAACAAG 57.960 47.619 0.00 0.00 0.00 3.16
71 72 1.464997 CCCGTAGCTCAAGAAACAAGC 59.535 52.381 0.00 0.00 36.27 4.01
72 73 2.143122 CCGTAGCTCAAGAAACAAGCA 58.857 47.619 0.00 0.00 38.51 3.91
73 74 2.548057 CCGTAGCTCAAGAAACAAGCAA 59.452 45.455 0.00 0.00 38.51 3.91
74 75 3.003275 CCGTAGCTCAAGAAACAAGCAAA 59.997 43.478 0.00 0.00 38.51 3.68
75 76 4.497340 CCGTAGCTCAAGAAACAAGCAAAA 60.497 41.667 0.00 0.00 38.51 2.44
76 77 4.672413 CGTAGCTCAAGAAACAAGCAAAAG 59.328 41.667 0.00 0.00 38.51 2.27
77 78 3.451526 AGCTCAAGAAACAAGCAAAAGC 58.548 40.909 0.00 0.00 38.51 3.51
78 79 2.217167 GCTCAAGAAACAAGCAAAAGCG 59.783 45.455 0.00 0.00 36.06 4.68
79 80 2.791004 CTCAAGAAACAAGCAAAAGCGG 59.209 45.455 0.00 0.00 0.00 5.52
80 81 2.425312 TCAAGAAACAAGCAAAAGCGGA 59.575 40.909 0.00 0.00 0.00 5.54
81 82 3.068024 TCAAGAAACAAGCAAAAGCGGAT 59.932 39.130 0.00 0.00 0.00 4.18
82 83 3.288809 AGAAACAAGCAAAAGCGGATC 57.711 42.857 0.00 0.00 0.00 3.36
83 84 2.029918 AGAAACAAGCAAAAGCGGATCC 60.030 45.455 0.00 0.00 0.00 3.36
84 85 1.327303 AACAAGCAAAAGCGGATCCA 58.673 45.000 13.41 0.00 0.00 3.41
85 86 1.327303 ACAAGCAAAAGCGGATCCAA 58.673 45.000 13.41 0.00 0.00 3.53
86 87 1.000274 ACAAGCAAAAGCGGATCCAAC 60.000 47.619 13.41 2.73 0.00 3.77
87 88 0.240945 AAGCAAAAGCGGATCCAACG 59.759 50.000 13.41 0.00 0.00 4.10
94 95 4.277239 CGGATCCAACGCTGAACA 57.723 55.556 13.41 0.00 0.00 3.18
95 96 2.081526 CGGATCCAACGCTGAACAG 58.918 57.895 13.41 0.00 0.00 3.16
96 97 0.670546 CGGATCCAACGCTGAACAGT 60.671 55.000 13.41 0.00 0.00 3.55
97 98 0.798776 GGATCCAACGCTGAACAGTG 59.201 55.000 6.95 12.86 44.11 3.66
98 99 0.798776 GATCCAACGCTGAACAGTGG 59.201 55.000 17.58 10.81 42.91 4.00
99 100 0.108585 ATCCAACGCTGAACAGTGGT 59.891 50.000 17.58 9.88 42.91 4.16
100 101 0.753867 TCCAACGCTGAACAGTGGTA 59.246 50.000 17.58 0.00 42.91 3.25
101 102 0.865769 CCAACGCTGAACAGTGGTAC 59.134 55.000 17.58 0.00 42.91 3.34
102 103 1.540363 CCAACGCTGAACAGTGGTACT 60.540 52.381 17.58 0.00 42.91 2.73
103 104 1.792949 CAACGCTGAACAGTGGTACTC 59.207 52.381 17.58 0.00 42.91 2.59
104 105 0.317479 ACGCTGAACAGTGGTACTCC 59.683 55.000 17.58 0.00 42.91 3.85
105 106 0.389948 CGCTGAACAGTGGTACTCCC 60.390 60.000 7.39 0.00 35.41 4.30
106 107 0.977395 GCTGAACAGTGGTACTCCCT 59.023 55.000 3.77 0.00 0.00 4.20
107 108 1.066787 GCTGAACAGTGGTACTCCCTC 60.067 57.143 3.77 0.00 0.00 4.30
108 109 1.550976 CTGAACAGTGGTACTCCCTCC 59.449 57.143 0.00 0.00 0.00 4.30
109 110 1.149288 TGAACAGTGGTACTCCCTCCT 59.851 52.381 0.00 0.00 0.00 3.69
110 111 2.258109 GAACAGTGGTACTCCCTCCTT 58.742 52.381 0.00 0.00 0.00 3.36
111 112 1.939980 ACAGTGGTACTCCCTCCTTC 58.060 55.000 0.00 0.00 0.00 3.46
112 113 1.196012 CAGTGGTACTCCCTCCTTCC 58.804 60.000 0.00 0.00 0.00 3.46
113 114 0.790993 AGTGGTACTCCCTCCTTCCA 59.209 55.000 0.00 0.00 0.00 3.53
114 115 1.366435 AGTGGTACTCCCTCCTTCCAT 59.634 52.381 0.00 0.00 0.00 3.41
115 116 1.763545 GTGGTACTCCCTCCTTCCATC 59.236 57.143 0.00 0.00 0.00 3.51
116 117 1.651770 TGGTACTCCCTCCTTCCATCT 59.348 52.381 0.00 0.00 0.00 2.90
117 118 2.863238 TGGTACTCCCTCCTTCCATCTA 59.137 50.000 0.00 0.00 0.00 1.98
118 119 3.471306 TGGTACTCCCTCCTTCCATCTAT 59.529 47.826 0.00 0.00 0.00 1.98
119 120 4.673132 TGGTACTCCCTCCTTCCATCTATA 59.327 45.833 0.00 0.00 0.00 1.31
120 121 5.318889 TGGTACTCCCTCCTTCCATCTATAT 59.681 44.000 0.00 0.00 0.00 0.86
121 122 6.511445 TGGTACTCCCTCCTTCCATCTATATA 59.489 42.308 0.00 0.00 0.00 0.86
122 123 7.064229 GGTACTCCCTCCTTCCATCTATATAG 58.936 46.154 3.10 3.10 0.00 1.31
123 124 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
124 125 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
125 126 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
126 127 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
127 128 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
128 129 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
129 130 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
130 131 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
131 132 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
132 133 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
133 134 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
134 135 4.262635 CCATCTATATAGGGCCTAATGCGG 60.263 50.000 18.91 8.18 42.61 5.69
135 136 3.990369 TCTATATAGGGCCTAATGCGGT 58.010 45.455 18.91 1.94 42.61 5.68
136 137 4.359105 TCTATATAGGGCCTAATGCGGTT 58.641 43.478 18.91 1.12 42.61 4.44
137 138 4.781087 TCTATATAGGGCCTAATGCGGTTT 59.219 41.667 18.91 0.30 42.61 3.27
138 139 2.748209 ATAGGGCCTAATGCGGTTTT 57.252 45.000 18.91 0.00 42.61 2.43
139 140 2.047002 TAGGGCCTAATGCGGTTTTC 57.953 50.000 11.78 0.00 42.61 2.29
140 141 1.029947 AGGGCCTAATGCGGTTTTCG 61.030 55.000 2.82 0.00 42.61 3.46
141 142 1.027792 GGGCCTAATGCGGTTTTCGA 61.028 55.000 0.84 0.00 42.61 3.71
142 143 0.377203 GGCCTAATGCGGTTTTCGAG 59.623 55.000 0.00 0.00 42.61 4.04
143 144 0.377203 GCCTAATGCGGTTTTCGAGG 59.623 55.000 0.00 0.00 42.43 4.63
144 145 0.377203 CCTAATGCGGTTTTCGAGGC 59.623 55.000 0.00 0.00 42.43 4.70
145 146 1.369625 CTAATGCGGTTTTCGAGGCT 58.630 50.000 0.00 0.00 42.43 4.58
146 147 2.546778 CTAATGCGGTTTTCGAGGCTA 58.453 47.619 0.00 0.00 42.43 3.93
147 148 1.816074 AATGCGGTTTTCGAGGCTAA 58.184 45.000 0.00 0.00 42.43 3.09
148 149 1.084289 ATGCGGTTTTCGAGGCTAAC 58.916 50.000 0.00 0.00 42.43 2.34
149 150 0.034337 TGCGGTTTTCGAGGCTAACT 59.966 50.000 0.00 0.00 42.43 2.24
150 151 1.154197 GCGGTTTTCGAGGCTAACTT 58.846 50.000 0.00 0.00 42.43 2.66
151 152 1.534163 GCGGTTTTCGAGGCTAACTTT 59.466 47.619 0.00 0.00 42.43 2.66
152 153 2.664698 GCGGTTTTCGAGGCTAACTTTG 60.665 50.000 0.00 0.00 42.43 2.77
153 154 2.803956 CGGTTTTCGAGGCTAACTTTGA 59.196 45.455 0.00 0.00 42.43 2.69
154 155 3.363673 CGGTTTTCGAGGCTAACTTTGAC 60.364 47.826 0.00 0.00 42.43 3.18
155 156 3.058432 GGTTTTCGAGGCTAACTTTGACC 60.058 47.826 0.00 0.00 0.00 4.02
156 157 3.478857 TTTCGAGGCTAACTTTGACCA 57.521 42.857 0.00 0.00 0.00 4.02
157 158 3.478857 TTCGAGGCTAACTTTGACCAA 57.521 42.857 0.00 0.00 0.00 3.67
158 159 3.478857 TCGAGGCTAACTTTGACCAAA 57.521 42.857 0.00 0.00 0.00 3.28
159 160 4.015872 TCGAGGCTAACTTTGACCAAAT 57.984 40.909 0.00 0.00 0.00 2.32
160 161 3.751175 TCGAGGCTAACTTTGACCAAATG 59.249 43.478 0.00 0.00 0.00 2.32
161 162 3.502211 CGAGGCTAACTTTGACCAAATGT 59.498 43.478 0.00 0.00 0.00 2.71
162 163 4.023193 CGAGGCTAACTTTGACCAAATGTT 60.023 41.667 0.00 11.80 0.00 2.71
163 164 5.180492 CGAGGCTAACTTTGACCAAATGTTA 59.820 40.000 0.00 12.42 0.00 2.41
164 165 6.575162 AGGCTAACTTTGACCAAATGTTAG 57.425 37.500 22.72 22.72 40.29 2.34
165 166 6.303839 AGGCTAACTTTGACCAAATGTTAGA 58.696 36.000 26.48 10.83 40.08 2.10
166 167 6.431234 AGGCTAACTTTGACCAAATGTTAGAG 59.569 38.462 26.48 16.32 40.08 2.43
167 168 6.086871 GCTAACTTTGACCAAATGTTAGAGC 58.913 40.000 26.48 19.41 40.08 4.09
168 169 6.293955 GCTAACTTTGACCAAATGTTAGAGCA 60.294 38.462 26.48 10.01 40.08 4.26
169 170 6.463995 AACTTTGACCAAATGTTAGAGCAA 57.536 33.333 0.00 0.00 0.00 3.91
170 171 6.655078 ACTTTGACCAAATGTTAGAGCAAT 57.345 33.333 0.00 0.00 0.00 3.56
171 172 7.759489 ACTTTGACCAAATGTTAGAGCAATA 57.241 32.000 0.00 0.00 0.00 1.90
172 173 8.177119 ACTTTGACCAAATGTTAGAGCAATAA 57.823 30.769 0.00 0.00 0.00 1.40
173 174 8.806146 ACTTTGACCAAATGTTAGAGCAATAAT 58.194 29.630 0.00 0.00 0.00 1.28
185 186 9.723601 TGTTAGAGCAATAATATATGACATGCA 57.276 29.630 10.78 0.00 34.89 3.96
188 189 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
189 190 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
198 199 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
199 200 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
200 201 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
201 202 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
202 203 4.202141 ACATGCAACTTACACAAAGCACAT 60.202 37.500 0.00 0.00 38.93 3.21
203 204 3.963665 TGCAACTTACACAAAGCACATC 58.036 40.909 0.00 0.00 38.93 3.06
204 205 3.379688 TGCAACTTACACAAAGCACATCA 59.620 39.130 0.00 0.00 38.93 3.07
205 206 4.037803 TGCAACTTACACAAAGCACATCAT 59.962 37.500 0.00 0.00 38.93 2.45
206 207 4.618489 GCAACTTACACAAAGCACATCATC 59.382 41.667 0.00 0.00 38.93 2.92
207 208 5.761003 CAACTTACACAAAGCACATCATCA 58.239 37.500 0.00 0.00 38.93 3.07
208 209 6.207928 CAACTTACACAAAGCACATCATCAA 58.792 36.000 0.00 0.00 38.93 2.57
209 210 6.389830 ACTTACACAAAGCACATCATCAAA 57.610 33.333 0.00 0.00 38.93 2.69
210 211 6.985117 ACTTACACAAAGCACATCATCAAAT 58.015 32.000 0.00 0.00 38.93 2.32
211 212 7.436118 ACTTACACAAAGCACATCATCAAATT 58.564 30.769 0.00 0.00 38.93 1.82
212 213 7.596248 ACTTACACAAAGCACATCATCAAATTC 59.404 33.333 0.00 0.00 38.93 2.17
213 214 4.919168 ACACAAAGCACATCATCAAATTCG 59.081 37.500 0.00 0.00 0.00 3.34
214 215 4.919168 CACAAAGCACATCATCAAATTCGT 59.081 37.500 0.00 0.00 0.00 3.85
215 216 6.085573 CACAAAGCACATCATCAAATTCGTA 58.914 36.000 0.00 0.00 0.00 3.43
216 217 6.748658 CACAAAGCACATCATCAAATTCGTAT 59.251 34.615 0.00 0.00 0.00 3.06
217 218 6.748658 ACAAAGCACATCATCAAATTCGTATG 59.251 34.615 0.00 0.00 0.00 2.39
218 219 6.441093 AAGCACATCATCAAATTCGTATGT 57.559 33.333 0.00 0.00 0.00 2.29
219 220 5.813717 AGCACATCATCAAATTCGTATGTG 58.186 37.500 8.50 8.50 44.34 3.21
220 221 5.585844 AGCACATCATCAAATTCGTATGTGA 59.414 36.000 15.34 0.00 44.30 3.58
221 222 6.093909 AGCACATCATCAAATTCGTATGTGAA 59.906 34.615 15.34 0.00 44.30 3.18
222 223 6.746822 GCACATCATCAAATTCGTATGTGAAA 59.253 34.615 15.34 0.00 44.30 2.69
223 224 7.044510 GCACATCATCAAATTCGTATGTGAAAG 60.045 37.037 15.34 0.00 44.30 2.62
224 225 7.430211 CACATCATCAAATTCGTATGTGAAAGG 59.570 37.037 7.32 0.00 44.30 3.11
225 226 7.336679 ACATCATCAAATTCGTATGTGAAAGGA 59.663 33.333 0.00 0.00 31.82 3.36
226 227 7.307493 TCATCAAATTCGTATGTGAAAGGAG 57.693 36.000 0.00 0.00 31.82 3.69
227 228 5.545658 TCAAATTCGTATGTGAAAGGAGC 57.454 39.130 0.00 0.00 0.00 4.70
228 229 5.245531 TCAAATTCGTATGTGAAAGGAGCT 58.754 37.500 0.00 0.00 0.00 4.09
229 230 5.351465 TCAAATTCGTATGTGAAAGGAGCTC 59.649 40.000 4.71 4.71 0.00 4.09
230 231 4.744795 ATTCGTATGTGAAAGGAGCTCT 57.255 40.909 14.64 0.00 0.00 4.09
231 232 3.784701 TCGTATGTGAAAGGAGCTCTC 57.215 47.619 14.64 3.94 0.00 3.20
232 233 3.089284 TCGTATGTGAAAGGAGCTCTCA 58.911 45.455 14.64 6.88 0.00 3.27
233 234 3.509967 TCGTATGTGAAAGGAGCTCTCAA 59.490 43.478 14.64 1.88 0.00 3.02
234 235 4.160439 TCGTATGTGAAAGGAGCTCTCAAT 59.840 41.667 14.64 8.49 0.00 2.57
235 236 4.269603 CGTATGTGAAAGGAGCTCTCAATG 59.730 45.833 14.64 0.00 0.00 2.82
236 237 4.564782 ATGTGAAAGGAGCTCTCAATGA 57.435 40.909 14.64 0.00 0.00 2.57
237 238 4.564782 TGTGAAAGGAGCTCTCAATGAT 57.435 40.909 14.64 0.00 0.00 2.45
238 239 5.682234 TGTGAAAGGAGCTCTCAATGATA 57.318 39.130 14.64 0.00 0.00 2.15
239 240 6.244552 TGTGAAAGGAGCTCTCAATGATAT 57.755 37.500 14.64 0.00 0.00 1.63
240 241 7.365497 TGTGAAAGGAGCTCTCAATGATATA 57.635 36.000 14.64 0.00 0.00 0.86
241 242 7.795047 TGTGAAAGGAGCTCTCAATGATATAA 58.205 34.615 14.64 0.00 0.00 0.98
242 243 8.435187 TGTGAAAGGAGCTCTCAATGATATAAT 58.565 33.333 14.64 0.00 0.00 1.28
243 244 9.282569 GTGAAAGGAGCTCTCAATGATATAATT 57.717 33.333 14.64 0.00 0.00 1.40
244 245 9.857656 TGAAAGGAGCTCTCAATGATATAATTT 57.142 29.630 14.64 0.00 0.00 1.82
247 248 9.857656 AAGGAGCTCTCAATGATATAATTTTCA 57.142 29.630 14.64 0.00 0.00 2.69
248 249 9.282569 AGGAGCTCTCAATGATATAATTTTCAC 57.717 33.333 14.64 0.00 0.00 3.18
249 250 9.060347 GGAGCTCTCAATGATATAATTTTCACA 57.940 33.333 14.64 0.00 0.00 3.58
266 267 9.524106 AATTTTCACATTATGCATGTCATGTAG 57.476 29.630 10.16 9.56 43.17 2.74
267 268 7.628769 TTTCACATTATGCATGTCATGTAGT 57.371 32.000 10.16 1.63 43.17 2.73
268 269 8.729805 TTTCACATTATGCATGTCATGTAGTA 57.270 30.769 10.16 2.89 43.17 1.82
269 270 8.907222 TTCACATTATGCATGTCATGTAGTAT 57.093 30.769 10.16 4.99 43.17 2.12
270 271 8.907222 TCACATTATGCATGTCATGTAGTATT 57.093 30.769 10.16 0.00 43.17 1.89
271 272 9.995003 TCACATTATGCATGTCATGTAGTATTA 57.005 29.630 10.16 0.00 43.17 0.98
294 295 9.965824 ATTAATTTTATCAATAGTCAAAGGCGG 57.034 29.630 0.00 0.00 0.00 6.13
295 296 7.404671 AATTTTATCAATAGTCAAAGGCGGT 57.595 32.000 0.00 0.00 0.00 5.68
296 297 6.431198 TTTTATCAATAGTCAAAGGCGGTC 57.569 37.500 0.00 0.00 0.00 4.79
297 298 3.914426 ATCAATAGTCAAAGGCGGTCT 57.086 42.857 0.00 0.00 0.00 3.85
298 299 3.695830 TCAATAGTCAAAGGCGGTCTT 57.304 42.857 0.00 0.00 37.28 3.01
299 300 3.334691 TCAATAGTCAAAGGCGGTCTTG 58.665 45.455 0.00 0.00 35.55 3.02
300 301 3.007506 TCAATAGTCAAAGGCGGTCTTGA 59.992 43.478 0.00 0.00 35.55 3.02
301 302 3.695830 ATAGTCAAAGGCGGTCTTGAA 57.304 42.857 0.00 0.00 35.55 2.69
302 303 2.341846 AGTCAAAGGCGGTCTTGAAA 57.658 45.000 0.00 0.00 35.55 2.69
303 304 2.650322 AGTCAAAGGCGGTCTTGAAAA 58.350 42.857 0.00 0.00 35.55 2.29
304 305 3.020984 AGTCAAAGGCGGTCTTGAAAAA 58.979 40.909 0.00 0.00 35.55 1.94
305 306 3.113322 GTCAAAGGCGGTCTTGAAAAAC 58.887 45.455 0.00 0.00 35.55 2.43
306 307 2.116366 CAAAGGCGGTCTTGAAAAACG 58.884 47.619 0.00 0.00 35.55 3.60
313 314 3.488489 CGGTCTTGAAAAACGCATTAGG 58.512 45.455 0.00 0.00 0.00 2.69
314 315 3.242518 GGTCTTGAAAAACGCATTAGGC 58.757 45.455 0.00 0.00 39.90 3.93
315 316 3.242518 GTCTTGAAAAACGCATTAGGCC 58.757 45.455 0.00 0.00 40.31 5.19
316 317 2.230266 TCTTGAAAAACGCATTAGGCCC 59.770 45.455 0.00 0.00 40.31 5.80
317 318 1.917872 TGAAAAACGCATTAGGCCCT 58.082 45.000 0.00 0.00 40.31 5.19
318 319 3.074675 TGAAAAACGCATTAGGCCCTA 57.925 42.857 0.00 0.00 40.31 3.53
319 320 3.626930 TGAAAAACGCATTAGGCCCTAT 58.373 40.909 0.00 0.00 40.31 2.57
320 321 4.783055 TGAAAAACGCATTAGGCCCTATA 58.217 39.130 0.00 0.00 40.31 1.31
321 322 5.381757 TGAAAAACGCATTAGGCCCTATAT 58.618 37.500 0.00 0.00 40.31 0.86
322 323 6.535540 TGAAAAACGCATTAGGCCCTATATA 58.464 36.000 0.00 0.00 40.31 0.86
323 324 6.653320 TGAAAAACGCATTAGGCCCTATATAG 59.347 38.462 0.00 2.46 40.31 1.31
324 325 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
325 326 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
326 327 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
327 328 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
328 329 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
329 330 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
330 331 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
331 332 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
332 333 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
333 334 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
334 335 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
335 336 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
336 337 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
337 338 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
338 339 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
339 340 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
340 341 7.294584 CCTATATAGATGGAAGGAGGGAGTAG 58.705 46.154 11.53 0.00 0.00 2.57
341 342 2.095604 AGATGGAAGGAGGGAGTAGC 57.904 55.000 0.00 0.00 0.00 3.58
342 343 1.292242 AGATGGAAGGAGGGAGTAGCA 59.708 52.381 0.00 0.00 0.00 3.49
343 344 2.119495 GATGGAAGGAGGGAGTAGCAA 58.881 52.381 0.00 0.00 0.00 3.91
344 345 1.573108 TGGAAGGAGGGAGTAGCAAG 58.427 55.000 0.00 0.00 0.00 4.01
345 346 1.203313 TGGAAGGAGGGAGTAGCAAGT 60.203 52.381 0.00 0.00 0.00 3.16
346 347 2.043939 TGGAAGGAGGGAGTAGCAAGTA 59.956 50.000 0.00 0.00 0.00 2.24
347 348 3.105283 GGAAGGAGGGAGTAGCAAGTAA 58.895 50.000 0.00 0.00 0.00 2.24
348 349 3.712218 GGAAGGAGGGAGTAGCAAGTAAT 59.288 47.826 0.00 0.00 0.00 1.89
349 350 4.164413 GGAAGGAGGGAGTAGCAAGTAATT 59.836 45.833 0.00 0.00 0.00 1.40
350 351 5.360649 AAGGAGGGAGTAGCAAGTAATTC 57.639 43.478 0.00 0.00 0.00 2.17
351 352 4.362677 AGGAGGGAGTAGCAAGTAATTCA 58.637 43.478 0.00 0.00 0.00 2.57
352 353 4.783227 AGGAGGGAGTAGCAAGTAATTCAA 59.217 41.667 0.00 0.00 0.00 2.69
357 358 6.825721 AGGGAGTAGCAAGTAATTCAAATCAG 59.174 38.462 0.00 0.00 0.00 2.90
359 360 6.094048 GGAGTAGCAAGTAATTCAAATCAGCA 59.906 38.462 0.00 0.00 0.00 4.41
368 369 4.877378 ATTCAAATCAGCACCAACACAT 57.123 36.364 0.00 0.00 0.00 3.21
369 370 5.981088 ATTCAAATCAGCACCAACACATA 57.019 34.783 0.00 0.00 0.00 2.29
370 371 5.981088 TTCAAATCAGCACCAACACATAT 57.019 34.783 0.00 0.00 0.00 1.78
371 372 5.981088 TCAAATCAGCACCAACACATATT 57.019 34.783 0.00 0.00 0.00 1.28
374 375 7.215789 TCAAATCAGCACCAACACATATTTTT 58.784 30.769 0.00 0.00 0.00 1.94
375 376 7.384660 TCAAATCAGCACCAACACATATTTTTC 59.615 33.333 0.00 0.00 0.00 2.29
399 400 8.850454 TCTTTTTGTTCTTCAAACTATTTCCG 57.150 30.769 0.00 0.00 44.39 4.30
413 414 7.625828 AACTATTTCCGGAATTCAGGTTTAG 57.374 36.000 19.62 20.25 32.79 1.85
416 417 8.711170 ACTATTTCCGGAATTCAGGTTTAGATA 58.289 33.333 19.62 7.14 32.79 1.98
417 418 9.209175 CTATTTCCGGAATTCAGGTTTAGATAG 57.791 37.037 19.62 12.88 32.79 2.08
418 419 6.555463 TTCCGGAATTCAGGTTTAGATAGT 57.445 37.500 21.93 0.00 32.79 2.12
453 454 7.284489 ACCATGGTAAATACATGTTGTATGTCC 59.716 37.037 18.10 0.00 42.29 4.02
459 460 9.109393 GTAAATACATGTTGTATGTCCATGTCT 57.891 33.333 2.30 0.00 44.27 3.41
494 3556 8.514136 TTTTTCTTCAAAATATAACCAGCACG 57.486 30.769 0.00 0.00 31.39 5.34
495 3557 6.811253 TTCTTCAAAATATAACCAGCACGT 57.189 33.333 0.00 0.00 0.00 4.49
498 3560 5.728351 TCAAAATATAACCAGCACGTAGC 57.272 39.130 0.00 0.00 46.19 3.58
536 4138 3.297620 CGCAGCCACAAGCCCTTT 61.298 61.111 0.00 0.00 45.47 3.11
537 4139 2.859981 CGCAGCCACAAGCCCTTTT 61.860 57.895 0.00 0.00 45.47 2.27
552 4154 2.978978 CCCTTTTCCCCCACAAAATCTT 59.021 45.455 0.00 0.00 0.00 2.40
626 4228 1.132500 CACCTCACTCCCCCTTATCC 58.868 60.000 0.00 0.00 0.00 2.59
665 4267 2.122369 CGCCCCTTATCCCCTCCT 60.122 66.667 0.00 0.00 0.00 3.69
687 4289 5.591067 CCTCTTACAAACCCACACAAACTAA 59.409 40.000 0.00 0.00 0.00 2.24
688 4290 6.264518 CCTCTTACAAACCCACACAAACTAAT 59.735 38.462 0.00 0.00 0.00 1.73
699 4301 1.035385 CAAACTAATCGCCCACCCCC 61.035 60.000 0.00 0.00 0.00 5.40
700 4302 1.502527 AAACTAATCGCCCACCCCCA 61.503 55.000 0.00 0.00 0.00 4.96
701 4303 2.192175 CTAATCGCCCACCCCCAC 59.808 66.667 0.00 0.00 0.00 4.61
709 4311 3.979497 CCACCCCCACCCTCCAAC 61.979 72.222 0.00 0.00 0.00 3.77
710 4312 4.344865 CACCCCCACCCTCCAACG 62.345 72.222 0.00 0.00 0.00 4.10
711 4313 4.585216 ACCCCCACCCTCCAACGA 62.585 66.667 0.00 0.00 0.00 3.85
712 4314 3.015145 CCCCCACCCTCCAACGAT 61.015 66.667 0.00 0.00 0.00 3.73
713 4315 2.590092 CCCCACCCTCCAACGATC 59.410 66.667 0.00 0.00 0.00 3.69
714 4316 2.297895 CCCCACCCTCCAACGATCA 61.298 63.158 0.00 0.00 0.00 2.92
955 4557 2.764637 ATCAAACCCCTCCACACGCC 62.765 60.000 0.00 0.00 0.00 5.68
1034 4636 2.187946 CTCCATCGCCACCTCCAC 59.812 66.667 0.00 0.00 0.00 4.02
1035 4637 3.723235 CTCCATCGCCACCTCCACG 62.723 68.421 0.00 0.00 0.00 4.94
1115 4717 3.712881 GTCCAGCGGCGACAACAC 61.713 66.667 12.98 0.00 0.00 3.32
1377 4979 2.203294 AAGACCAAGCGCCGGTTT 60.203 55.556 19.24 11.76 36.69 3.27
1567 5169 1.221840 GAGAAGAAGCCCGCCATGA 59.778 57.895 0.00 0.00 0.00 3.07
1701 5303 2.320367 GACATCGGCTACTAATCAGCG 58.680 52.381 0.00 0.00 40.05 5.18
1752 5354 0.034616 AACTCAGGTGAGCTCTGCAC 59.965 55.000 16.19 5.31 45.79 4.57
1778 5380 6.750501 CCATGTCTGAATTAATGTGCTCAAAG 59.249 38.462 0.00 0.00 0.00 2.77
1858 5478 0.249784 CAGATGGACAGCGGAGGATG 60.250 60.000 0.00 0.00 35.16 3.51
1859 5479 1.070445 GATGGACAGCGGAGGATGG 59.930 63.158 0.00 0.00 32.67 3.51
1860 5480 1.383109 ATGGACAGCGGAGGATGGA 60.383 57.895 0.00 0.00 32.67 3.41
1884 5507 0.320771 GGCTTGTGGTGTCGATCTGT 60.321 55.000 0.00 0.00 0.00 3.41
1914 5537 2.829120 GGTGTAGGAGCTGATAGGATCC 59.171 54.545 2.48 2.48 41.61 3.36
1990 5617 9.950496 ATAACTATTGTGTTCTCTCTTCACATT 57.050 29.630 0.00 0.00 40.85 2.71
2003 5630 8.999431 TCTCTCTTCACATTTGTGTATTTTACC 58.001 33.333 10.30 0.00 45.76 2.85
2025 5652 6.638610 ACCATTGTTCAAATTGTTGAGAACA 58.361 32.000 0.00 0.00 44.49 3.18
2046 5673 7.417456 AGAACAATTTCATGATGCACAGCATAT 60.417 33.333 4.23 0.00 40.82 1.78
2064 5691 6.358822 CAGCATATTATGAGTGAAAATGTGCG 59.641 38.462 7.87 3.36 46.24 5.34
2088 5715 7.277098 GCGAACATACATAGGAAACTCAACTTA 59.723 37.037 0.00 0.00 43.67 2.24
2218 6225 4.929819 TGCTACTCAGAAACACTACACA 57.070 40.909 0.00 0.00 0.00 3.72
2230 6237 2.096819 ACACTACACAAACTTTGCCACG 59.903 45.455 1.14 0.00 0.00 4.94
2237 6244 2.053627 CAAACTTTGCCACGCTGAATC 58.946 47.619 0.00 0.00 0.00 2.52
2238 6245 0.598065 AACTTTGCCACGCTGAATCC 59.402 50.000 0.00 0.00 0.00 3.01
2239 6246 1.244019 ACTTTGCCACGCTGAATCCC 61.244 55.000 0.00 0.00 0.00 3.85
2253 6260 5.049405 CGCTGAATCCCATACTTAAATCACC 60.049 44.000 0.00 0.00 0.00 4.02
2285 6313 6.975772 CACCATCTTGTTTAGTCTAGTAGAGC 59.024 42.308 0.00 0.00 0.00 4.09
2288 6316 7.704472 CCATCTTGTTTAGTCTAGTAGAGCAAG 59.296 40.741 0.00 10.05 34.05 4.01
2294 6322 3.626930 AGTCTAGTAGAGCAAGGTCTGG 58.373 50.000 11.74 0.85 0.00 3.86
2322 6350 7.092079 TGCTGAAATTTAACCATGAGATGTTG 58.908 34.615 0.00 0.00 0.00 3.33
2365 6393 2.958355 ACAAAAGGAACACACCATCAGG 59.042 45.455 0.00 0.00 42.21 3.86
2366 6394 1.620822 AAAGGAACACACCATCAGGC 58.379 50.000 0.00 0.00 39.06 4.85
2367 6395 0.478072 AAGGAACACACCATCAGGCA 59.522 50.000 0.00 0.00 39.06 4.75
2368 6396 0.700564 AGGAACACACCATCAGGCAT 59.299 50.000 0.00 0.00 39.06 4.40
2370 6398 1.614051 GGAACACACCATCAGGCATCA 60.614 52.381 0.00 0.00 39.06 3.07
2371 6399 1.741706 GAACACACCATCAGGCATCAG 59.258 52.381 0.00 0.00 39.06 2.90
2372 6400 0.694771 ACACACCATCAGGCATCAGT 59.305 50.000 0.00 0.00 39.06 3.41
2373 6401 1.092348 CACACCATCAGGCATCAGTG 58.908 55.000 0.00 0.00 39.06 3.66
2402 6430 8.897752 CGAAGGAAAGGAAGATCTTAAATTCAT 58.102 33.333 8.25 7.79 0.00 2.57
2435 6463 1.539827 CCTTTAAGCAGTCGGGGTTTG 59.460 52.381 0.00 0.00 0.00 2.93
2441 6469 0.818040 GCAGTCGGGGTTTGAACAGT 60.818 55.000 0.00 0.00 0.00 3.55
2457 6485 7.915293 TTGAACAGTTTGGTACGATTATGAT 57.085 32.000 0.00 0.00 0.00 2.45
2509 6537 8.611654 ATTTTGAAATGGAAAGAGACATTTGG 57.388 30.769 7.29 0.00 44.68 3.28
2512 6540 7.543359 TGAAATGGAAAGAGACATTTGGAAT 57.457 32.000 7.29 0.00 44.68 3.01
2513 6541 8.648698 TGAAATGGAAAGAGACATTTGGAATA 57.351 30.769 7.29 0.00 44.68 1.75
2514 6542 9.258629 TGAAATGGAAAGAGACATTTGGAATAT 57.741 29.630 7.29 0.00 44.68 1.28
2517 6545 9.927081 AATGGAAAGAGACATTTGGAATATAGT 57.073 29.630 0.00 0.00 33.80 2.12
2524 6552 9.601217 AGAGACATTTGGAATATAGTAACACAC 57.399 33.333 0.00 0.00 0.00 3.82
2527 6555 6.037830 ACATTTGGAATATAGTAACACACGCC 59.962 38.462 0.00 0.00 0.00 5.68
2530 6558 3.181463 GGAATATAGTAACACACGCCCCA 60.181 47.826 0.00 0.00 0.00 4.96
2577 6605 6.091441 GTCAACAGAAGTTATCACTGGTCATC 59.909 42.308 0.00 0.00 35.85 2.92
2592 6620 4.928263 TGGTCATCATGGGTATCAAACAA 58.072 39.130 0.00 0.00 0.00 2.83
2621 6656 1.330829 GGTGCAAGCGAGTATAAAGGC 59.669 52.381 0.00 0.00 0.00 4.35
2644 6680 2.619849 CCTGGTCTGCCAATGTGATTCT 60.620 50.000 0.00 0.00 45.51 2.40
2651 6687 6.341316 GTCTGCCAATGTGATTCTTCTACTA 58.659 40.000 0.00 0.00 0.00 1.82
2652 6688 6.478344 GTCTGCCAATGTGATTCTTCTACTAG 59.522 42.308 0.00 0.00 0.00 2.57
2670 6706 0.038744 AGTGGCCATTCCTGGAACTG 59.961 55.000 9.72 10.90 46.37 3.16
2681 6717 2.687935 TCCTGGAACTGCAAGAACAAAC 59.312 45.455 0.00 0.00 37.43 2.93
2691 6727 3.236816 GCAAGAACAAACGTCATCATGG 58.763 45.455 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.032054 GGCACATACATCGTGTCAATGG 59.968 50.000 0.00 0.00 38.85 3.16
1 2 2.677337 TGGCACATACATCGTGTCAATG 59.323 45.455 0.00 0.00 45.44 2.82
2 3 2.984562 TGGCACATACATCGTGTCAAT 58.015 42.857 0.00 0.00 45.44 2.57
3 4 2.464157 TGGCACATACATCGTGTCAA 57.536 45.000 0.00 0.00 45.44 3.18
17 18 3.399440 TGAATTTTTGTGGGATGGCAC 57.601 42.857 0.00 0.00 0.00 5.01
18 19 4.133078 GTTTGAATTTTTGTGGGATGGCA 58.867 39.130 0.00 0.00 0.00 4.92
19 20 3.501828 GGTTTGAATTTTTGTGGGATGGC 59.498 43.478 0.00 0.00 0.00 4.40
20 21 4.071423 GGGTTTGAATTTTTGTGGGATGG 58.929 43.478 0.00 0.00 0.00 3.51
21 22 4.712476 TGGGTTTGAATTTTTGTGGGATG 58.288 39.130 0.00 0.00 0.00 3.51
22 23 5.581350 ATGGGTTTGAATTTTTGTGGGAT 57.419 34.783 0.00 0.00 0.00 3.85
23 24 6.296145 GGATATGGGTTTGAATTTTTGTGGGA 60.296 38.462 0.00 0.00 0.00 4.37
24 25 5.879777 GGATATGGGTTTGAATTTTTGTGGG 59.120 40.000 0.00 0.00 0.00 4.61
25 26 6.471146 TGGATATGGGTTTGAATTTTTGTGG 58.529 36.000 0.00 0.00 0.00 4.17
26 27 7.280652 GGATGGATATGGGTTTGAATTTTTGTG 59.719 37.037 0.00 0.00 0.00 3.33
27 28 7.337938 GGATGGATATGGGTTTGAATTTTTGT 58.662 34.615 0.00 0.00 0.00 2.83
28 29 6.767423 GGGATGGATATGGGTTTGAATTTTTG 59.233 38.462 0.00 0.00 0.00 2.44
29 30 6.407979 CGGGATGGATATGGGTTTGAATTTTT 60.408 38.462 0.00 0.00 0.00 1.94
30 31 5.070313 CGGGATGGATATGGGTTTGAATTTT 59.930 40.000 0.00 0.00 0.00 1.82
31 32 4.588528 CGGGATGGATATGGGTTTGAATTT 59.411 41.667 0.00 0.00 0.00 1.82
32 33 4.151883 CGGGATGGATATGGGTTTGAATT 58.848 43.478 0.00 0.00 0.00 2.17
33 34 3.140144 ACGGGATGGATATGGGTTTGAAT 59.860 43.478 0.00 0.00 0.00 2.57
34 35 2.512056 ACGGGATGGATATGGGTTTGAA 59.488 45.455 0.00 0.00 0.00 2.69
35 36 2.131854 ACGGGATGGATATGGGTTTGA 58.868 47.619 0.00 0.00 0.00 2.69
36 37 2.656947 ACGGGATGGATATGGGTTTG 57.343 50.000 0.00 0.00 0.00 2.93
37 38 2.039879 GCTACGGGATGGATATGGGTTT 59.960 50.000 0.00 0.00 0.00 3.27
38 39 1.628846 GCTACGGGATGGATATGGGTT 59.371 52.381 0.00 0.00 0.00 4.11
39 40 1.203313 AGCTACGGGATGGATATGGGT 60.203 52.381 0.00 0.00 0.00 4.51
40 41 1.482593 GAGCTACGGGATGGATATGGG 59.517 57.143 0.00 0.00 0.00 4.00
41 42 2.179427 TGAGCTACGGGATGGATATGG 58.821 52.381 0.00 0.00 0.00 2.74
42 43 3.511540 TCTTGAGCTACGGGATGGATATG 59.488 47.826 0.00 0.00 0.00 1.78
43 44 3.779444 TCTTGAGCTACGGGATGGATAT 58.221 45.455 0.00 0.00 0.00 1.63
44 45 3.238788 TCTTGAGCTACGGGATGGATA 57.761 47.619 0.00 0.00 0.00 2.59
45 46 2.088104 TCTTGAGCTACGGGATGGAT 57.912 50.000 0.00 0.00 0.00 3.41
46 47 1.860641 TTCTTGAGCTACGGGATGGA 58.139 50.000 0.00 0.00 0.00 3.41
47 48 2.280628 GTTTCTTGAGCTACGGGATGG 58.719 52.381 0.00 0.00 0.00 3.51
48 49 2.972625 TGTTTCTTGAGCTACGGGATG 58.027 47.619 0.00 0.00 0.00 3.51
49 50 3.600388 CTTGTTTCTTGAGCTACGGGAT 58.400 45.455 0.00 0.00 0.00 3.85
50 51 2.870435 GCTTGTTTCTTGAGCTACGGGA 60.870 50.000 0.00 0.00 33.72 5.14
51 52 1.464997 GCTTGTTTCTTGAGCTACGGG 59.535 52.381 0.00 0.00 33.72 5.28
52 53 2.143122 TGCTTGTTTCTTGAGCTACGG 58.857 47.619 0.00 0.00 37.32 4.02
53 54 3.878086 TTGCTTGTTTCTTGAGCTACG 57.122 42.857 0.00 0.00 37.32 3.51
54 55 4.442403 GCTTTTGCTTGTTTCTTGAGCTAC 59.558 41.667 0.00 0.00 43.35 3.58
55 56 4.610945 GCTTTTGCTTGTTTCTTGAGCTA 58.389 39.130 0.00 0.00 43.35 3.32
56 57 3.451526 GCTTTTGCTTGTTTCTTGAGCT 58.548 40.909 0.00 0.00 43.35 4.09
57 58 2.217167 CGCTTTTGCTTGTTTCTTGAGC 59.783 45.455 0.00 0.00 44.80 4.26
58 59 2.791004 CCGCTTTTGCTTGTTTCTTGAG 59.209 45.455 0.00 0.00 44.80 3.02
59 60 2.425312 TCCGCTTTTGCTTGTTTCTTGA 59.575 40.909 0.00 0.00 44.80 3.02
60 61 2.808244 TCCGCTTTTGCTTGTTTCTTG 58.192 42.857 0.00 0.00 44.80 3.02
61 62 3.552890 GGATCCGCTTTTGCTTGTTTCTT 60.553 43.478 0.00 0.00 44.80 2.52
62 63 2.029918 GGATCCGCTTTTGCTTGTTTCT 60.030 45.455 0.00 0.00 44.80 2.52
63 64 2.288152 TGGATCCGCTTTTGCTTGTTTC 60.288 45.455 7.39 0.00 44.80 2.78
64 65 1.686052 TGGATCCGCTTTTGCTTGTTT 59.314 42.857 7.39 0.00 44.80 2.83
65 66 1.327303 TGGATCCGCTTTTGCTTGTT 58.673 45.000 7.39 0.00 44.80 2.83
66 67 1.000274 GTTGGATCCGCTTTTGCTTGT 60.000 47.619 7.39 0.00 44.80 3.16
67 68 1.701704 GTTGGATCCGCTTTTGCTTG 58.298 50.000 7.39 0.00 44.80 4.01
68 69 0.240945 CGTTGGATCCGCTTTTGCTT 59.759 50.000 7.39 0.00 44.80 3.91
69 70 1.875963 CGTTGGATCCGCTTTTGCT 59.124 52.632 7.39 0.00 44.80 3.91
70 71 4.458164 CGTTGGATCCGCTTTTGC 57.542 55.556 7.39 0.00 43.23 3.68
77 78 0.670546 ACTGTTCAGCGTTGGATCCG 60.671 55.000 7.39 0.00 0.00 4.18
78 79 0.798776 CACTGTTCAGCGTTGGATCC 59.201 55.000 4.20 4.20 0.00 3.36
79 80 0.798776 CCACTGTTCAGCGTTGGATC 59.201 55.000 0.00 0.00 0.00 3.36
80 81 0.108585 ACCACTGTTCAGCGTTGGAT 59.891 50.000 12.68 0.00 0.00 3.41
81 82 0.753867 TACCACTGTTCAGCGTTGGA 59.246 50.000 12.68 0.00 0.00 3.53
82 83 0.865769 GTACCACTGTTCAGCGTTGG 59.134 55.000 0.00 3.49 0.00 3.77
83 84 1.792949 GAGTACCACTGTTCAGCGTTG 59.207 52.381 0.00 0.00 0.00 4.10
84 85 1.270147 GGAGTACCACTGTTCAGCGTT 60.270 52.381 0.00 0.00 35.97 4.84
85 86 0.317479 GGAGTACCACTGTTCAGCGT 59.683 55.000 0.00 0.00 35.97 5.07
86 87 0.389948 GGGAGTACCACTGTTCAGCG 60.390 60.000 0.00 0.00 39.85 5.18
87 88 0.977395 AGGGAGTACCACTGTTCAGC 59.023 55.000 0.00 0.00 43.89 4.26
88 89 1.550976 GGAGGGAGTACCACTGTTCAG 59.449 57.143 0.00 0.00 43.89 3.02
89 90 1.149288 AGGAGGGAGTACCACTGTTCA 59.851 52.381 0.00 0.00 43.89 3.18
90 91 1.939980 AGGAGGGAGTACCACTGTTC 58.060 55.000 0.00 0.00 43.89 3.18
91 92 2.258109 GAAGGAGGGAGTACCACTGTT 58.742 52.381 0.00 0.00 43.89 3.16
92 93 1.552719 GGAAGGAGGGAGTACCACTGT 60.553 57.143 0.00 0.00 43.89 3.55
93 94 1.196012 GGAAGGAGGGAGTACCACTG 58.804 60.000 0.00 0.00 43.89 3.66
94 95 0.790993 TGGAAGGAGGGAGTACCACT 59.209 55.000 0.00 0.00 43.89 4.00
95 96 1.763545 GATGGAAGGAGGGAGTACCAC 59.236 57.143 0.00 0.00 43.89 4.16
96 97 1.651770 AGATGGAAGGAGGGAGTACCA 59.348 52.381 0.00 0.00 43.89 3.25
97 98 2.480642 AGATGGAAGGAGGGAGTACC 57.519 55.000 0.00 0.00 40.67 3.34
98 99 7.064229 CCTATATAGATGGAAGGAGGGAGTAC 58.936 46.154 11.53 0.00 0.00 2.73
99 100 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
100 101 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
101 102 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
102 103 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
103 104 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
104 105 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
105 106 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
106 107 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
107 108 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
108 109 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
109 110 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
110 111 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
111 112 4.262635 CCGCATTAGGCCCTATATAGATGG 60.263 50.000 11.53 6.04 40.31 3.51
112 113 4.345257 ACCGCATTAGGCCCTATATAGATG 59.655 45.833 11.53 6.87 40.31 2.90
113 114 4.557705 ACCGCATTAGGCCCTATATAGAT 58.442 43.478 11.53 0.00 40.31 1.98
114 115 3.990369 ACCGCATTAGGCCCTATATAGA 58.010 45.455 11.53 0.00 40.31 1.98
115 116 4.755266 AACCGCATTAGGCCCTATATAG 57.245 45.455 0.00 2.46 40.31 1.31
116 117 5.493809 GAAAACCGCATTAGGCCCTATATA 58.506 41.667 0.00 0.00 40.31 0.86
117 118 4.332828 GAAAACCGCATTAGGCCCTATAT 58.667 43.478 0.00 0.00 40.31 0.86
118 119 3.746940 GAAAACCGCATTAGGCCCTATA 58.253 45.455 0.00 0.00 40.31 1.31
119 120 2.583143 GAAAACCGCATTAGGCCCTAT 58.417 47.619 0.00 0.00 40.31 2.57
120 121 1.744456 CGAAAACCGCATTAGGCCCTA 60.744 52.381 0.00 0.00 40.31 3.53
121 122 1.029947 CGAAAACCGCATTAGGCCCT 61.030 55.000 0.00 0.00 40.31 5.19
122 123 1.027792 TCGAAAACCGCATTAGGCCC 61.028 55.000 0.00 0.00 40.31 5.80
123 124 0.377203 CTCGAAAACCGCATTAGGCC 59.623 55.000 0.00 0.00 40.31 5.19
124 125 0.377203 CCTCGAAAACCGCATTAGGC 59.623 55.000 0.00 0.00 38.37 3.93
125 126 0.377203 GCCTCGAAAACCGCATTAGG 59.623 55.000 0.00 0.00 38.37 2.69
126 127 1.369625 AGCCTCGAAAACCGCATTAG 58.630 50.000 0.00 0.00 38.37 1.73
127 128 2.674357 GTTAGCCTCGAAAACCGCATTA 59.326 45.455 0.00 0.00 38.37 1.90
128 129 1.467342 GTTAGCCTCGAAAACCGCATT 59.533 47.619 0.00 0.00 38.37 3.56
129 130 1.084289 GTTAGCCTCGAAAACCGCAT 58.916 50.000 0.00 0.00 38.37 4.73
130 131 0.034337 AGTTAGCCTCGAAAACCGCA 59.966 50.000 0.00 0.00 38.37 5.69
131 132 1.154197 AAGTTAGCCTCGAAAACCGC 58.846 50.000 0.00 0.00 38.37 5.68
132 133 2.803956 TCAAAGTTAGCCTCGAAAACCG 59.196 45.455 0.00 0.00 40.25 4.44
133 134 3.058432 GGTCAAAGTTAGCCTCGAAAACC 60.058 47.826 0.00 0.00 0.00 3.27
134 135 3.562557 TGGTCAAAGTTAGCCTCGAAAAC 59.437 43.478 0.00 0.00 0.00 2.43
135 136 3.811083 TGGTCAAAGTTAGCCTCGAAAA 58.189 40.909 0.00 0.00 0.00 2.29
136 137 3.478857 TGGTCAAAGTTAGCCTCGAAA 57.521 42.857 0.00 0.00 0.00 3.46
137 138 3.478857 TTGGTCAAAGTTAGCCTCGAA 57.521 42.857 0.00 0.00 0.00 3.71
138 139 3.478857 TTTGGTCAAAGTTAGCCTCGA 57.521 42.857 0.00 0.00 0.00 4.04
139 140 3.502211 ACATTTGGTCAAAGTTAGCCTCG 59.498 43.478 2.55 0.00 33.32 4.63
140 141 5.453567 AACATTTGGTCAAAGTTAGCCTC 57.546 39.130 2.55 0.00 33.32 4.70
141 142 6.303839 TCTAACATTTGGTCAAAGTTAGCCT 58.696 36.000 22.83 1.72 39.10 4.58
142 143 6.569179 TCTAACATTTGGTCAAAGTTAGCC 57.431 37.500 22.83 0.00 39.10 3.93
143 144 6.086871 GCTCTAACATTTGGTCAAAGTTAGC 58.913 40.000 22.83 17.67 39.10 3.09
144 145 7.202016 TGCTCTAACATTTGGTCAAAGTTAG 57.798 36.000 22.30 22.30 39.68 2.34
145 146 7.575414 TTGCTCTAACATTTGGTCAAAGTTA 57.425 32.000 2.55 9.12 33.32 2.24
146 147 6.463995 TTGCTCTAACATTTGGTCAAAGTT 57.536 33.333 2.55 8.59 33.32 2.66
147 148 6.655078 ATTGCTCTAACATTTGGTCAAAGT 57.345 33.333 2.55 0.00 33.32 2.66
159 160 9.723601 TGCATGTCATATATTATTGCTCTAACA 57.276 29.630 0.00 0.00 0.00 2.41
162 163 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
163 164 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
172 173 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
173 174 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
174 175 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
175 176 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
176 177 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
177 178 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
178 179 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
179 180 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
180 181 3.704512 TGTGCTTTGTGTAAGTTGCATG 58.295 40.909 0.00 0.00 36.19 4.06
181 182 4.037803 TGATGTGCTTTGTGTAAGTTGCAT 59.962 37.500 0.00 0.00 36.19 3.96
182 183 3.379688 TGATGTGCTTTGTGTAAGTTGCA 59.620 39.130 0.00 0.00 36.19 4.08
183 184 3.963665 TGATGTGCTTTGTGTAAGTTGC 58.036 40.909 0.00 0.00 36.19 4.17
184 185 5.761003 TGATGATGTGCTTTGTGTAAGTTG 58.239 37.500 0.00 0.00 36.19 3.16
185 186 6.389830 TTGATGATGTGCTTTGTGTAAGTT 57.610 33.333 0.00 0.00 36.19 2.66
186 187 6.389830 TTTGATGATGTGCTTTGTGTAAGT 57.610 33.333 0.00 0.00 36.19 2.24
187 188 7.201291 CGAATTTGATGATGTGCTTTGTGTAAG 60.201 37.037 0.00 0.00 36.90 2.34
188 189 6.581919 CGAATTTGATGATGTGCTTTGTGTAA 59.418 34.615 0.00 0.00 0.00 2.41
189 190 6.085573 CGAATTTGATGATGTGCTTTGTGTA 58.914 36.000 0.00 0.00 0.00 2.90
190 191 4.919168 CGAATTTGATGATGTGCTTTGTGT 59.081 37.500 0.00 0.00 0.00 3.72
191 192 4.919168 ACGAATTTGATGATGTGCTTTGTG 59.081 37.500 0.00 0.00 0.00 3.33
192 193 5.125100 ACGAATTTGATGATGTGCTTTGT 57.875 34.783 0.00 0.00 0.00 2.83
193 194 6.748658 ACATACGAATTTGATGATGTGCTTTG 59.251 34.615 0.00 0.00 0.00 2.77
194 195 6.748658 CACATACGAATTTGATGATGTGCTTT 59.251 34.615 18.49 0.00 38.17 3.51
195 196 6.093909 TCACATACGAATTTGATGATGTGCTT 59.906 34.615 22.13 1.56 42.39 3.91
196 197 5.585844 TCACATACGAATTTGATGATGTGCT 59.414 36.000 22.13 1.79 42.39 4.40
197 198 5.809464 TCACATACGAATTTGATGATGTGC 58.191 37.500 22.13 0.00 42.39 4.57
198 199 7.430211 CCTTTCACATACGAATTTGATGATGTG 59.570 37.037 21.52 21.52 43.46 3.21
199 200 7.336679 TCCTTTCACATACGAATTTGATGATGT 59.663 33.333 0.00 3.64 0.00 3.06
200 201 7.696755 TCCTTTCACATACGAATTTGATGATG 58.303 34.615 0.00 3.05 0.00 3.07
201 202 7.467811 GCTCCTTTCACATACGAATTTGATGAT 60.468 37.037 0.00 0.00 0.00 2.45
202 203 6.183360 GCTCCTTTCACATACGAATTTGATGA 60.183 38.462 0.00 0.00 0.00 2.92
203 204 5.967674 GCTCCTTTCACATACGAATTTGATG 59.032 40.000 0.00 2.13 0.00 3.07
204 205 5.882557 AGCTCCTTTCACATACGAATTTGAT 59.117 36.000 0.00 0.00 0.00 2.57
205 206 5.245531 AGCTCCTTTCACATACGAATTTGA 58.754 37.500 0.00 0.00 0.00 2.69
206 207 5.352569 AGAGCTCCTTTCACATACGAATTTG 59.647 40.000 10.93 0.00 0.00 2.32
207 208 5.491982 AGAGCTCCTTTCACATACGAATTT 58.508 37.500 10.93 0.00 0.00 1.82
208 209 5.091261 AGAGCTCCTTTCACATACGAATT 57.909 39.130 10.93 0.00 0.00 2.17
209 210 4.160439 TGAGAGCTCCTTTCACATACGAAT 59.840 41.667 10.93 0.00 0.00 3.34
210 211 3.509967 TGAGAGCTCCTTTCACATACGAA 59.490 43.478 10.93 0.00 0.00 3.85
211 212 3.089284 TGAGAGCTCCTTTCACATACGA 58.911 45.455 10.93 0.00 0.00 3.43
212 213 3.510388 TGAGAGCTCCTTTCACATACG 57.490 47.619 10.93 0.00 0.00 3.06
213 214 5.423015 TCATTGAGAGCTCCTTTCACATAC 58.577 41.667 10.93 0.00 0.00 2.39
214 215 5.682234 TCATTGAGAGCTCCTTTCACATA 57.318 39.130 10.93 0.00 0.00 2.29
215 216 4.564782 TCATTGAGAGCTCCTTTCACAT 57.435 40.909 10.93 2.37 0.00 3.21
216 217 4.564782 ATCATTGAGAGCTCCTTTCACA 57.435 40.909 10.93 0.00 0.00 3.58
217 218 8.845413 ATTATATCATTGAGAGCTCCTTTCAC 57.155 34.615 10.93 0.00 0.00 3.18
218 219 9.857656 AAATTATATCATTGAGAGCTCCTTTCA 57.142 29.630 10.93 4.94 0.00 2.69
221 222 9.857656 TGAAAATTATATCATTGAGAGCTCCTT 57.142 29.630 10.93 0.00 0.00 3.36
222 223 9.282569 GTGAAAATTATATCATTGAGAGCTCCT 57.717 33.333 10.93 0.00 0.00 3.69
223 224 9.060347 TGTGAAAATTATATCATTGAGAGCTCC 57.940 33.333 10.93 2.40 0.00 4.70
268 269 9.965824 CCGCCTTTGACTATTGATAAAATTAAT 57.034 29.630 0.00 0.00 0.00 1.40
269 270 8.962679 ACCGCCTTTGACTATTGATAAAATTAA 58.037 29.630 0.00 0.00 0.00 1.40
270 271 8.514330 ACCGCCTTTGACTATTGATAAAATTA 57.486 30.769 0.00 0.00 0.00 1.40
271 272 7.339466 AGACCGCCTTTGACTATTGATAAAATT 59.661 33.333 0.00 0.00 0.00 1.82
272 273 6.828785 AGACCGCCTTTGACTATTGATAAAAT 59.171 34.615 0.00 0.00 0.00 1.82
273 274 6.177610 AGACCGCCTTTGACTATTGATAAAA 58.822 36.000 0.00 0.00 0.00 1.52
274 275 5.741011 AGACCGCCTTTGACTATTGATAAA 58.259 37.500 0.00 0.00 0.00 1.40
275 276 5.353394 AGACCGCCTTTGACTATTGATAA 57.647 39.130 0.00 0.00 0.00 1.75
276 277 5.105106 TCAAGACCGCCTTTGACTATTGATA 60.105 40.000 0.00 0.00 31.42 2.15
277 278 3.914426 AGACCGCCTTTGACTATTGAT 57.086 42.857 0.00 0.00 0.00 2.57
278 279 3.007506 TCAAGACCGCCTTTGACTATTGA 59.992 43.478 0.00 0.00 31.42 2.57
279 280 3.334691 TCAAGACCGCCTTTGACTATTG 58.665 45.455 0.00 0.00 31.42 1.90
280 281 3.695830 TCAAGACCGCCTTTGACTATT 57.304 42.857 0.00 0.00 31.42 1.73
281 282 3.695830 TTCAAGACCGCCTTTGACTAT 57.304 42.857 0.00 0.00 31.42 2.12
282 283 3.478857 TTTCAAGACCGCCTTTGACTA 57.521 42.857 0.00 0.00 31.42 2.59
283 284 2.341846 TTTCAAGACCGCCTTTGACT 57.658 45.000 0.00 0.00 31.42 3.41
284 285 3.113322 GTTTTTCAAGACCGCCTTTGAC 58.887 45.455 0.00 0.00 31.42 3.18
285 286 2.223386 CGTTTTTCAAGACCGCCTTTGA 60.223 45.455 0.00 0.00 31.42 2.69
286 287 2.116366 CGTTTTTCAAGACCGCCTTTG 58.884 47.619 0.00 0.00 31.42 2.77
287 288 1.535226 GCGTTTTTCAAGACCGCCTTT 60.535 47.619 0.00 0.00 38.52 3.11
288 289 0.030235 GCGTTTTTCAAGACCGCCTT 59.970 50.000 0.00 0.00 38.52 4.35
289 290 1.098712 TGCGTTTTTCAAGACCGCCT 61.099 50.000 0.00 0.00 43.44 5.52
290 291 0.039527 ATGCGTTTTTCAAGACCGCC 60.040 50.000 0.00 0.00 43.44 6.13
291 292 1.766069 AATGCGTTTTTCAAGACCGC 58.234 45.000 0.00 0.00 44.27 5.68
292 293 3.488489 CCTAATGCGTTTTTCAAGACCG 58.512 45.455 0.00 0.00 0.00 4.79
293 294 3.242518 GCCTAATGCGTTTTTCAAGACC 58.757 45.455 0.00 0.00 0.00 3.85
294 295 3.242518 GGCCTAATGCGTTTTTCAAGAC 58.757 45.455 0.00 0.00 42.61 3.01
295 296 2.230266 GGGCCTAATGCGTTTTTCAAGA 59.770 45.455 0.84 0.00 42.61 3.02
296 297 2.231235 AGGGCCTAATGCGTTTTTCAAG 59.769 45.455 2.82 0.00 42.61 3.02
297 298 2.243810 AGGGCCTAATGCGTTTTTCAA 58.756 42.857 2.82 0.00 42.61 2.69
298 299 1.917872 AGGGCCTAATGCGTTTTTCA 58.082 45.000 2.82 0.00 42.61 2.69
299 300 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
300 301 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
301 302 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
302 303 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
303 304 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
304 305 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
305 306 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
306 307 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
307 308 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
308 309 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
309 310 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
310 311 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
311 312 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
312 313 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
313 314 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
314 315 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
315 316 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
316 317 6.775629 GCTACTCCCTCCTTCCATCTATATAG 59.224 46.154 3.10 3.10 0.00 1.31
317 318 6.219772 TGCTACTCCCTCCTTCCATCTATATA 59.780 42.308 0.00 0.00 0.00 0.86
318 319 5.016782 TGCTACTCCCTCCTTCCATCTATAT 59.983 44.000 0.00 0.00 0.00 0.86
319 320 4.357097 TGCTACTCCCTCCTTCCATCTATA 59.643 45.833 0.00 0.00 0.00 1.31
320 321 3.142977 TGCTACTCCCTCCTTCCATCTAT 59.857 47.826 0.00 0.00 0.00 1.98
321 322 2.518407 TGCTACTCCCTCCTTCCATCTA 59.482 50.000 0.00 0.00 0.00 1.98
322 323 1.292242 TGCTACTCCCTCCTTCCATCT 59.708 52.381 0.00 0.00 0.00 2.90
323 324 1.794714 TGCTACTCCCTCCTTCCATC 58.205 55.000 0.00 0.00 0.00 3.51
324 325 2.122768 CTTGCTACTCCCTCCTTCCAT 58.877 52.381 0.00 0.00 0.00 3.41
325 326 1.203313 ACTTGCTACTCCCTCCTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
326 327 1.574263 ACTTGCTACTCCCTCCTTCC 58.426 55.000 0.00 0.00 0.00 3.46
327 328 5.104900 TGAATTACTTGCTACTCCCTCCTTC 60.105 44.000 0.00 0.00 0.00 3.46
328 329 4.783227 TGAATTACTTGCTACTCCCTCCTT 59.217 41.667 0.00 0.00 0.00 3.36
329 330 4.362677 TGAATTACTTGCTACTCCCTCCT 58.637 43.478 0.00 0.00 0.00 3.69
330 331 4.755266 TGAATTACTTGCTACTCCCTCC 57.245 45.455 0.00 0.00 0.00 4.30
331 332 6.823689 TGATTTGAATTACTTGCTACTCCCTC 59.176 38.462 0.00 0.00 0.00 4.30
332 333 6.721318 TGATTTGAATTACTTGCTACTCCCT 58.279 36.000 0.00 0.00 0.00 4.20
333 334 6.458888 GCTGATTTGAATTACTTGCTACTCCC 60.459 42.308 0.00 0.00 0.00 4.30
334 335 6.094048 TGCTGATTTGAATTACTTGCTACTCC 59.906 38.462 0.00 0.00 0.00 3.85
335 336 6.963805 GTGCTGATTTGAATTACTTGCTACTC 59.036 38.462 0.00 0.00 0.00 2.59
336 337 6.127897 GGTGCTGATTTGAATTACTTGCTACT 60.128 38.462 0.00 0.00 0.00 2.57
337 338 6.030228 GGTGCTGATTTGAATTACTTGCTAC 58.970 40.000 0.00 0.00 0.00 3.58
338 339 5.709631 TGGTGCTGATTTGAATTACTTGCTA 59.290 36.000 0.00 0.00 0.00 3.49
339 340 4.523943 TGGTGCTGATTTGAATTACTTGCT 59.476 37.500 0.00 0.00 0.00 3.91
340 341 4.808558 TGGTGCTGATTTGAATTACTTGC 58.191 39.130 0.00 0.00 0.00 4.01
341 342 6.144402 GTGTTGGTGCTGATTTGAATTACTTG 59.856 38.462 0.00 0.00 0.00 3.16
342 343 6.183360 TGTGTTGGTGCTGATTTGAATTACTT 60.183 34.615 0.00 0.00 0.00 2.24
343 344 5.301551 TGTGTTGGTGCTGATTTGAATTACT 59.698 36.000 0.00 0.00 0.00 2.24
344 345 5.527951 TGTGTTGGTGCTGATTTGAATTAC 58.472 37.500 0.00 0.00 0.00 1.89
345 346 5.781210 TGTGTTGGTGCTGATTTGAATTA 57.219 34.783 0.00 0.00 0.00 1.40
346 347 4.669206 TGTGTTGGTGCTGATTTGAATT 57.331 36.364 0.00 0.00 0.00 2.17
347 348 4.877378 ATGTGTTGGTGCTGATTTGAAT 57.123 36.364 0.00 0.00 0.00 2.57
348 349 5.981088 ATATGTGTTGGTGCTGATTTGAA 57.019 34.783 0.00 0.00 0.00 2.69
349 350 5.981088 AATATGTGTTGGTGCTGATTTGA 57.019 34.783 0.00 0.00 0.00 2.69
350 351 7.385752 AGAAAAATATGTGTTGGTGCTGATTTG 59.614 33.333 0.00 0.00 0.00 2.32
351 352 7.444299 AGAAAAATATGTGTTGGTGCTGATTT 58.556 30.769 0.00 0.00 0.00 2.17
352 353 6.996509 AGAAAAATATGTGTTGGTGCTGATT 58.003 32.000 0.00 0.00 0.00 2.57
357 358 7.693020 ACAAAAAGAAAAATATGTGTTGGTGC 58.307 30.769 0.00 0.00 0.00 5.01
359 360 9.665719 AGAACAAAAAGAAAAATATGTGTTGGT 57.334 25.926 0.00 0.00 0.00 3.67
416 417 7.867921 TGTATTTACCATGGTCCAAGAATACT 58.132 34.615 23.76 2.31 32.67 2.12
417 418 8.567948 CATGTATTTACCATGGTCCAAGAATAC 58.432 37.037 23.76 23.82 32.30 1.89
418 419 8.278639 ACATGTATTTACCATGGTCCAAGAATA 58.721 33.333 23.76 15.15 0.00 1.75
473 3535 6.036735 GCTACGTGCTGGTTATATTTTGAAGA 59.963 38.462 0.00 0.00 38.95 2.87
484 3546 2.983791 GGGGCTACGTGCTGGTTA 59.016 61.111 0.00 0.00 42.39 2.85
485 3547 4.388499 CGGGGCTACGTGCTGGTT 62.388 66.667 0.00 0.00 42.39 3.67
533 4135 3.007940 GGGAAGATTTTGTGGGGGAAAAG 59.992 47.826 0.00 0.00 0.00 2.27
536 4138 1.549037 CGGGAAGATTTTGTGGGGGAA 60.549 52.381 0.00 0.00 0.00 3.97
537 4139 0.039035 CGGGAAGATTTTGTGGGGGA 59.961 55.000 0.00 0.00 0.00 4.81
619 4221 2.819284 GGGTGAGGCGGGGATAAGG 61.819 68.421 0.00 0.00 0.00 2.69
665 4267 6.017770 CGATTAGTTTGTGTGGGTTTGTAAGA 60.018 38.462 0.00 0.00 0.00 2.10
934 4536 1.165270 CGTGTGGAGGGGTTTGATTC 58.835 55.000 0.00 0.00 0.00 2.52
935 4537 0.893727 GCGTGTGGAGGGGTTTGATT 60.894 55.000 0.00 0.00 0.00 2.57
985 4587 4.170062 CATTGCTGCTGCGTCCGG 62.170 66.667 11.21 0.00 43.34 5.14
986 4588 4.170062 CCATTGCTGCTGCGTCCG 62.170 66.667 11.21 0.00 43.34 4.79
987 4589 4.487412 GCCATTGCTGCTGCGTCC 62.487 66.667 11.21 0.00 43.34 4.79
988 4590 4.487412 GGCCATTGCTGCTGCGTC 62.487 66.667 11.21 0.00 43.34 5.19
1170 4772 1.152839 GGAGGAGAGGAGGACGGAG 60.153 68.421 0.00 0.00 0.00 4.63
1567 5169 1.883275 GACGTCGATGATGATCTCCCT 59.117 52.381 12.58 0.00 0.00 4.20
1752 5354 4.641541 TGAGCACATTAATTCAGACATGGG 59.358 41.667 0.00 0.00 0.00 4.00
1778 5380 3.390135 CATTGATTGATTGAGCCATGGC 58.610 45.455 30.12 30.12 42.33 4.40
1846 5466 1.406065 CCTCATCCATCCTCCGCTGT 61.406 60.000 0.00 0.00 0.00 4.40
1858 5478 0.678048 GACACCACAAGCCCTCATCC 60.678 60.000 0.00 0.00 0.00 3.51
1859 5479 1.021390 CGACACCACAAGCCCTCATC 61.021 60.000 0.00 0.00 0.00 2.92
1860 5480 1.003355 CGACACCACAAGCCCTCAT 60.003 57.895 0.00 0.00 0.00 2.90
1884 5507 2.066340 CTCCTACACCAAGCCCACA 58.934 57.895 0.00 0.00 0.00 4.17
1914 5537 3.910568 AGAGAGCTTCCATTTCTCCAG 57.089 47.619 0.00 0.00 38.45 3.86
2046 5673 5.681337 TGTTCGCACATTTTCACTCATAA 57.319 34.783 0.00 0.00 0.00 1.90
2047 5674 5.878332 ATGTTCGCACATTTTCACTCATA 57.122 34.783 0.00 0.00 41.16 2.15
2064 5691 9.871238 TCTAAGTTGAGTTTCCTATGTATGTTC 57.129 33.333 0.00 0.00 0.00 3.18
2113 5740 5.796350 AGACATTTGGCTTGTACGTATTC 57.204 39.130 0.00 0.00 0.00 1.75
2218 6225 1.000274 GGATTCAGCGTGGCAAAGTTT 60.000 47.619 0.00 0.00 0.00 2.66
2230 6237 5.049405 CGGTGATTTAAGTATGGGATTCAGC 60.049 44.000 0.00 0.00 0.00 4.26
2237 6244 3.066203 GCAACCGGTGATTTAAGTATGGG 59.934 47.826 8.52 0.00 0.00 4.00
2238 6245 3.066203 GGCAACCGGTGATTTAAGTATGG 59.934 47.826 8.52 0.00 0.00 2.74
2239 6246 3.692101 TGGCAACCGGTGATTTAAGTATG 59.308 43.478 8.52 0.00 0.00 2.39
2285 6313 4.796038 AATTTCAGCAATCCAGACCTTG 57.204 40.909 0.00 0.00 0.00 3.61
2288 6316 5.047377 TGGTTAAATTTCAGCAATCCAGACC 60.047 40.000 1.87 0.00 0.00 3.85
2294 6322 7.977853 ACATCTCATGGTTAAATTTCAGCAATC 59.022 33.333 8.22 0.00 33.60 2.67
2322 6350 0.248215 CAGCAATGCGGACGAATTCC 60.248 55.000 0.00 0.00 41.75 3.01
2366 6394 1.466167 CCTTTCCTTCGTGCACTGATG 59.534 52.381 16.19 14.60 0.00 3.07
2367 6395 1.347707 TCCTTTCCTTCGTGCACTGAT 59.652 47.619 16.19 0.00 0.00 2.90
2368 6396 0.756294 TCCTTTCCTTCGTGCACTGA 59.244 50.000 16.19 11.14 0.00 3.41
2370 6398 1.416401 TCTTCCTTTCCTTCGTGCACT 59.584 47.619 16.19 0.00 0.00 4.40
2371 6399 1.878953 TCTTCCTTTCCTTCGTGCAC 58.121 50.000 6.82 6.82 0.00 4.57
2372 6400 2.303022 AGATCTTCCTTTCCTTCGTGCA 59.697 45.455 0.00 0.00 0.00 4.57
2373 6401 2.979240 AGATCTTCCTTTCCTTCGTGC 58.021 47.619 0.00 0.00 0.00 5.34
2374 6402 7.617041 ATTTAAGATCTTCCTTTCCTTCGTG 57.383 36.000 12.24 0.00 0.00 4.35
2375 6403 7.883311 TGAATTTAAGATCTTCCTTTCCTTCGT 59.117 33.333 12.24 0.00 0.00 3.85
2376 6404 8.268850 TGAATTTAAGATCTTCCTTTCCTTCG 57.731 34.615 12.24 0.00 0.00 3.79
2402 6430 5.071115 ACTGCTTAAAGGTTAAAATTGGGCA 59.929 36.000 0.00 0.00 0.00 5.36
2435 6463 6.315393 ACCATCATAATCGTACCAAACTGTTC 59.685 38.462 0.00 0.00 0.00 3.18
2441 6469 8.740123 ATGTTTACCATCATAATCGTACCAAA 57.260 30.769 0.00 0.00 0.00 3.28
2457 6485 8.523915 AGATGATAGCAAATTGATGTTTACCA 57.476 30.769 0.00 0.00 0.00 3.25
2488 6516 6.975196 TTCCAAATGTCTCTTTCCATTTCA 57.025 33.333 0.00 0.00 38.79 2.69
2504 6532 5.529800 GGGCGTGTGTTACTATATTCCAAAT 59.470 40.000 0.00 0.00 0.00 2.32
2507 6535 3.181463 GGGGCGTGTGTTACTATATTCCA 60.181 47.826 0.00 0.00 0.00 3.53
2508 6536 3.181463 TGGGGCGTGTGTTACTATATTCC 60.181 47.826 0.00 0.00 0.00 3.01
2509 6537 4.062677 TGGGGCGTGTGTTACTATATTC 57.937 45.455 0.00 0.00 0.00 1.75
2512 6540 5.811796 ATTATGGGGCGTGTGTTACTATA 57.188 39.130 0.00 0.00 0.00 1.31
2513 6541 4.699925 ATTATGGGGCGTGTGTTACTAT 57.300 40.909 0.00 0.00 0.00 2.12
2514 6542 4.490899 AATTATGGGGCGTGTGTTACTA 57.509 40.909 0.00 0.00 0.00 1.82
2515 6543 3.359695 AATTATGGGGCGTGTGTTACT 57.640 42.857 0.00 0.00 0.00 2.24
2516 6544 4.496840 GCTAAATTATGGGGCGTGTGTTAC 60.497 45.833 0.00 0.00 0.00 2.50
2517 6545 3.628487 GCTAAATTATGGGGCGTGTGTTA 59.372 43.478 0.00 0.00 0.00 2.41
2518 6546 2.425668 GCTAAATTATGGGGCGTGTGTT 59.574 45.455 0.00 0.00 0.00 3.32
2519 6547 2.021457 GCTAAATTATGGGGCGTGTGT 58.979 47.619 0.00 0.00 0.00 3.72
2520 6548 2.020720 TGCTAAATTATGGGGCGTGTG 58.979 47.619 0.00 0.00 0.00 3.82
2521 6549 2.297701 CTGCTAAATTATGGGGCGTGT 58.702 47.619 0.00 0.00 0.00 4.49
2522 6550 1.001378 GCTGCTAAATTATGGGGCGTG 60.001 52.381 0.00 0.00 0.00 5.34
2523 6551 1.133792 AGCTGCTAAATTATGGGGCGT 60.134 47.619 0.00 0.00 0.00 5.68
2524 6552 1.267806 CAGCTGCTAAATTATGGGGCG 59.732 52.381 0.00 0.00 0.00 6.13
2527 6555 3.484407 AGCTCAGCTGCTAAATTATGGG 58.516 45.455 9.47 0.00 42.10 4.00
2530 6558 5.374921 ACATGAGCTCAGCTGCTAAATTAT 58.625 37.500 22.96 0.00 44.17 1.28
2548 6576 5.934043 CCAGTGATAACTTCTGTTGACATGA 59.066 40.000 0.00 0.00 37.59 3.07
2577 6605 3.781079 ATGCGTTGTTTGATACCCATG 57.219 42.857 0.00 0.00 0.00 3.66
2605 6633 0.582005 GGCGCCTTTATACTCGCTTG 59.418 55.000 22.15 0.00 45.97 4.01
2606 6634 0.464452 AGGCGCCTTTATACTCGCTT 59.536 50.000 27.08 0.00 45.97 4.68
2611 6646 1.139058 CAGACCAGGCGCCTTTATACT 59.861 52.381 30.60 18.43 0.00 2.12
2644 6680 2.771943 CCAGGAATGGCCACTAGTAGAA 59.228 50.000 8.16 0.00 40.02 2.10
2651 6687 0.038744 CAGTTCCAGGAATGGCCACT 59.961 55.000 8.16 0.00 40.02 4.00
2652 6688 1.598701 GCAGTTCCAGGAATGGCCAC 61.599 60.000 8.16 0.00 40.02 5.01
2670 6706 3.236816 CCATGATGACGTTTGTTCTTGC 58.763 45.455 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.